RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6661
(172 letters)
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 176 bits (447), Expect = 4e-57
Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 4/174 (2%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECP--- 59
+ NILITGTPGTGK+++ E + + D + ++V K+ +EN FY +YD + +
Sbjct: 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 65
Query: 60 ELDEDKLLDELEPRVQG-GGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSG 118
E DED+LLD +EP + G ++DYHS+E+FPERW V VL L++RL ++ S
Sbjct: 66 EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSE 125
Query: 119 KKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVKQWK 172
K +N++ EI EEARD+Y++DIV+ ++T + M++ V I + V+ K
Sbjct: 126 AKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK 179
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 170 bits (431), Expect = 1e-54
Identities = 84/168 (50%), Positives = 120/168 (71%), Gaps = 1/168 (0%)
Query: 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDED 64
PNIL+TGTPG GK+TL +E+ + L++I+V +ARE Q Y YDE+Y+CP LDED
Sbjct: 9 MLLPNILLTGTPGVGKTTLGKELASKSG-LKYINVGDLAREEQLYDGYDEEYDCPILDED 67
Query: 65 KLLDELEPRVQGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDN 124
+++DEL+ +++ GG I+DYH + FPERW V+VL D LY+RL +G + KKL DN
Sbjct: 68 RVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDN 127
Query: 125 LQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVKQWK 172
+QCEIFQ + EEA SYKE+IV LPSN +++ +NV I+++++QW
Sbjct: 128 IQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWI 175
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 57.0 bits (137), Expect = 8e-11
Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 31/196 (15%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ--CDSLEWIDVN------KIARENQFYLKY 52
M +K +++TG PG G +T + + + + + V+ ++A+E
Sbjct: 1 MKNKV----VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDR 56
Query: 53 DEQYECPELDEDKLLDELEPRVQGGGK----IIDYHSAEMFPERWI-------------D 95
D+ + + ++ ++ K +D HS P+ ++ D
Sbjct: 57 DQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPD 116
Query: 96 QVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY--KEDIVVSLPSNT 153
+ V+ + R + + L E Q + A SY V + N
Sbjct: 117 LIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNR 176
Query: 154 HDDMSSNVTSIIQFVK 169
+ + V + ++
Sbjct: 177 NGLLDQAVEELTNVLR 192
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 49.7 bits (118), Expect = 4e-08
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 35/193 (18%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSL--------EWIDVNKIARENQFYLKYDEQYECPEL 61
++TG PG GKST+ +V + D+ + A + + DE +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63
Query: 62 DEDKL-------LDELEPRVQGGGKIIDYHSAEMFPERWI-------------DQVYVLS 101
+ KL + E G ID H+ P ++ +++L
Sbjct: 64 KQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLE 123
Query: 102 ADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIV-----VSLPSNTHDD 156
AD + R K + + D + + AR + V V + N D
Sbjct: 124 ADPKIILSRQ--KRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGD 181
Query: 157 MSSNVTSIIQFVK 169
S II+ +K
Sbjct: 182 PSIAANEIIRSMK 194
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 49.3 bits (117), Expect = 5e-08
Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 17/182 (9%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQY 56
M+ +L++G PG+GKST+ E + D+ + + + +
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSH 62
Query: 57 ECPELDEDKLLDELEPRVQGGGK-IIDYHSAEMFPERWIDQ-----VYVLSADNTTLYDR 110
+ + D + G I+D + + VL +R
Sbjct: 63 QQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER 122
Query: 111 LVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVKQ 170
+++G + Q A + + + D + S I ++
Sbjct: 123 CLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLP-------VSGKDTDQALQSAINALQS 175
Query: 171 WK 172
+
Sbjct: 176 GR 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-06
Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 50/165 (30%)
Query: 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE-------WIDVNK-------IARENQFYL 50
R N+LI G G+GK+ + +V W+++ + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 51 KYDEQYECPELDEDKLLDELEPRVQGGGKIIDYHSAEMFPER-WIDQVY-----VLSADN 104
+ D + D + + HS + R + Y VL N
Sbjct: 208 QIDPNW-TSRSDHSSNI------------KLRIHSIQAELRRLLKSKPYENCLLVL--LN 252
Query: 105 TTLYDRLVEKGQSGKKLQD-NLQCEIFQTILEEARDSYKEDIVVS 148
V Q+ K NL C+I T R D + +
Sbjct: 253 -------V---QNAKAWNAFNLSCKILLT----TRFKQVTDFLSA 283
Score = 36.4 bits (83), Expect = 0.004
Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 53/186 (28%)
Query: 20 KSTLCEEVVKQCD--SLEWIDVNKIARENQFYLKYDEQYE-CPELDED-----KLLDELE 71
+ VV + SL V K +E+ + E +L+ + ++D
Sbjct: 400 IKSDVMVVVNKLHKYSL----VEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYN 454
Query: 72 PR--VQGGGKIID-----------YH--------SAEMFPE-----RWIDQ--VYVLSAD 103
I +H +F R+++Q + +A
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 104 NTT--LYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNV 161
N + + + L + + DN + + I+ LP + + S
Sbjct: 515 NASGSILNTLQQLKFYKPYICDN----------DPKYERLVNAILDFLPKIEENLICSKY 564
Query: 162 TSIIQF 167
T +++
Sbjct: 565 TDLLRI 570
Score = 29.4 bits (65), Expect = 0.74
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 20/113 (17%)
Query: 20 KSTLCEEVVKQCDSLE------WIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPR 73
+ ++ D++ W ++K +E +E ++ L+ ++
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFVEEVLR---INYKFLMSPIKTE 101
Query: 74 VQGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQ 126
M +I+Q L DN V + Q KL+ L
Sbjct: 102 ---------QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 45.3 bits (107), Expect = 1e-06
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 19/133 (14%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDV----NKIARENQFYLKYDEQYECPELDEDK 65
+ITG G GKST C+ + Q D+ +I+ + + + + DE L
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL---ALTWKN 61
Query: 66 LLDEL-EPRVQGGGKIIDYHSAEMFPERWIDQ-----------VYVLSADNTTLYDRLVE 113
+ D + ++DY + E +L + L R
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL 121
Query: 114 KGQSGKKLQDNLQ 126
+ + + + L+
Sbjct: 122 RKKDEQMGERCLE 134
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 40.0 bits (93), Expect = 1e-04
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 9 NILITGTPGTGKSTLCEEVVKQC 31
I+ITG PG GK+TL +++V++
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERL 24
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 39.8 bits (92), Expect = 2e-04
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLE-----WIDVNKIARENQFYLKYDEQYECPELD 62
P + G PGTGK+ ++ + +I+ + P
Sbjct: 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR 104
Query: 63 ----EDKLLDELEPRVQGGGKII 81
D+ L L ++ +
Sbjct: 105 RGLSRDEFLALLVEHLRERDLYM 127
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 34/106 (32%)
Query: 10 ILITGTPGTGKSTLC-----------------------EEVVKQCDSLEWIDVNKIAREN 46
I +TG PGTGK+ + +++Q W D + +
Sbjct: 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNW-DFEEYIEKK 84
Query: 47 QFYLKY-----DEQYECPELDEDKLLDELEPRVQGGGK-----IID 82
+ ++Q+ L ++L++++ Q G +ID
Sbjct: 85 LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVID 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 38.8 bits (90), Expect = 3e-04
Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 18/178 (10%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDE---DKL 66
I++TG P TGK+TL + + L + + L + ++ + L
Sbjct: 8 IIVTGHPATGKTTLSQALATGLR-LPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMML 66
Query: 67 LDELEPRVQGGGK-IIDYHSAEMFPERWIDQ----------VYVLSADNTTLYDRLVEKG 115
+Q G I++ + + A L +R++ +
Sbjct: 67 YHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126
Query: 116 QSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPS---NTHDDMSSNVTSIIQFVKQ 170
G + + + + + P +T ++ +I+Q+V+Q
Sbjct: 127 AQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQ 184
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 37.8 bits (87), Expect = 6e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 9 NILITGTPGTGKSTLCEEVVKQCDS 33
++ +TG PG GK+TL + + S
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKS 27
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 37.0 bits (86), Expect = 0.001
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 36/101 (35%)
Query: 10 ILITGTPGTGKSTLC-----------------------EEVVKQCDSLEWIDVNKIAREN 46
+L++G PGTGK+ +V + W DV +
Sbjct: 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGW-DVKPYEEKG 84
Query: 47 QFYL------------KYDEQYECPELDEDKLLDELEPRVQ 75
F + +Y++ D + ++ L ++
Sbjct: 85 MFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIR 125
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 37.2 bits (86), Expect = 0.001
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 28/94 (29%)
Query: 10 ILITGTPGTGKSTLC------------------------EEVVKQCDSLEWIDVNKIARE 45
L++GT GTGK+ ++++K S W +
Sbjct: 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101
Query: 46 NQFYL----KYDEQYECPELDEDKLLDELEPRVQ 75
F L + Q D L++ + +Q
Sbjct: 102 KLFILDASPDPEGQEVVGGFDLSALIERINYAIQ 135
Score = 33.0 bits (75), Expect = 0.037
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 10 ILITGTPGTGKSTLC 24
IL TG GTGK+ L
Sbjct: 284 ILATGATGTGKTLLV 298
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 36.6 bits (84), Expect = 0.002
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 5 RTKPNILITGTPGTGKSTLCEEVVKQC-----DSLEWIDVN--KIARENQFYLKYDEQYE 57
NI I G GTGK+ + + V+ + + + +N +I + E +
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLD 102
Query: 58 CPELDEDKLLDELEPR 73
+ EL R
Sbjct: 103 VKVPFTGLSIAELYRR 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.005
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 22/50 (44%)
Query: 113 EKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVT 162
EK Q+ KKLQ +L+ L Y +D S P+ ++ T
Sbjct: 18 EK-QALKKLQASLK-------L------YADD---SAPA-----LAIKAT 45
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 35.0 bits (80), Expect = 0.005
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 19/181 (10%)
Query: 1 MSSKRTKPNILI-TGTPGTGKSTLCEEVVKQCDSLEWIDVNKI-ARENQFYLKYDEQYEC 58
MS+ +I + G G+GKS + EV Q ++D + + R N + E
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFLHPRRNIEKMASGEPLND 59
Query: 59 P--ELDEDKLLDELEPRVQGGGKIIDYHSA------EMFPERWIDQVYV-LSADNTTLYD 109
+ L D + + SA ++ E + ++ L D +
Sbjct: 60 DDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIES 119
Query: 110 RLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169
RL K + G + + F+T L+E + +VV + + + V S I+ +K
Sbjct: 120 RL--KARKGHFFKTQMLVTQFET-LQEPGADETDVLVVDI-DQPLEGV---VASTIEVIK 172
Query: 170 Q 170
+
Sbjct: 173 K 173
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 35.5 bits (82), Expect = 0.005
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 9 NILITGTPGTGKSTL 23
+L+ G GTGKST
Sbjct: 47 GVLVFGDRGTGKSTA 61
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 34.8 bits (80), Expect = 0.006
Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 33/181 (18%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYEC---------PE 60
ILITG PG+GKS + + ++ + I ++ + R+ Y + E
Sbjct: 4 ILITGMPGSGKSEFAKLLKER--GAKVIVMSDVVRKR--YSIEAKPGERLMDFAKRLREI 59
Query: 61 LDEDKLLDELEPRVQGGGK---IID----YHSAEMFPERWIDQVYVLS--ADNTTLYDRL 111
+ + + + D E F D VY+++ + Y R+
Sbjct: 60 YGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRM 119
Query: 112 VEKGQSGKKLQDNLQCEIFQT-ILEEARDSYKE-----DIVVSLPSNTHDDMSSNVTSII 165
+E+ +S D+ + EE + E D +++ + +++ +
Sbjct: 120 IERLRSD----DSKEISELIRRDREELKLGIGEVIAMADYIITN-DSNYEEFKRRCEEVT 174
Query: 166 Q 166
Sbjct: 175 D 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 35.1 bits (81), Expect = 0.006
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 12 ITGTPGTGKSTLCEEVVKQ 30
ITG PG GKST + +
Sbjct: 60 ITGVPGVGKSTTIDALGSL 78
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 35.5 bits (82), Expect = 0.007
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 7 KPNILITGTPGTGKSTL---CEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDE 63
K ++L+ G PGTGKS L E++ + + EN +K + + E
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119
Query: 64 DKLLDELEPRVQGGGKIIDYHSAEMFPERWIDQVYVLSADNT 105
+ + + + + ++ V + T
Sbjct: 120 KYREKAKSQ------ESVKSSNMRLKSTVLVPKLLVDNCGRT 155
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 35.0 bits (80), Expect = 0.008
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
RT N I PG GKS + ++ +
Sbjct: 30 GGDRTNSNWTILAKPGAGKSFTAKMLLLR 58
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 34.4 bits (79), Expect = 0.010
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 12 ITGTPGTGKSTLCEEVVKQ 30
+TGTPG GKST E
Sbjct: 61 VTGTPGAGKSTFLEAFGML 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 34.7 bits (79), Expect = 0.011
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQC 31
K + L G GTGK+ + + + +
Sbjct: 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 34.5 bits (79), Expect = 0.013
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQC 31
++ G PG GK+T V ++
Sbjct: 74 SGVFRAAMLYGPPGIGKTTAAHLVAQEL 101
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 33.7 bits (78), Expect = 0.014
Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 26/183 (14%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK-IARE-----NQFYLKYDEQY- 56
K+ NI + G G GK+++ ++ K D +K I + + E
Sbjct: 2 KKNLTNIYLIGLMGAGKTSVGSQLAKLTK-RILYDSDKEIEKRTGADIAWIFEMEGEAGF 60
Query: 57 -ECPELDEDKLLDEL---EPRV--QGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDR 110
E ++++ L + + GGG ++D + + E + V L+A T R
Sbjct: 61 RRR----EREMIEALCKLDNIILATGGGVVLDEKNRQQISETGV--VIYLTASIDTQLKR 114
Query: 111 LVEKGQSGK-KLQDNLQCEIFQTILEEARDSYKE--DIVVSLPSNTHDDMSSNVTSIIQF 167
+ +KG+ + N E Q + E + Y+ D+V + T I+
Sbjct: 115 IGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQL---ATQILVD 171
Query: 168 VKQ 170
+KQ
Sbjct: 172 IKQ 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 33.9 bits (77), Expect = 0.014
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42
M + ++++ G G+GK+T+ V + LE+ + +
Sbjct: 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG-LEFAEADAF 63
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 33.8 bits (77), Expect = 0.015
Identities = 20/134 (14%), Positives = 39/134 (29%), Gaps = 19/134 (14%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIA---RENQFYLKYDEQYECPELDEDKL 66
I I G G GK+ + ++ + ++ R+ D Q + L
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWI---PL 64
Query: 67 LDEL--EPRVQGGGKIIDYHSA----------EMFPERWID-QVYVLSADNTTLYDRLVE 113
+ + + G +I S +R + + L A + +RL
Sbjct: 65 MLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRR 124
Query: 114 KGQSGKKLQDNLQC 127
GQ +
Sbjct: 125 DGQPQVNVGTVEDR 138
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 34.1 bits (78), Expect = 0.015
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 12 ITGTPGTGKSTLCEEVVKQ 30
ITG PG GKST E +
Sbjct: 84 ITGVPGVGKSTAIEALGMH 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 33.7 bits (77), Expect = 0.019
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 10 ILITGTPGTGKSTLCEEVV 28
+L+TG GTGK+T + +
Sbjct: 33 VLLTGGTGTGKTTFAAQFI 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.020
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 26/114 (22%)
Query: 75 QG----G-GKIID-YHSAEMFPERW--ID----QVYVLS-----ADN-TTLYDRLVEKGQ 116
QG G G D Y +++ + W D Y S +N L + G+
Sbjct: 1624 QGSQEQGMGM--DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT--IHFGGE 1679
Query: 117 SGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNT--HDDMSSNVTSIIQ 166
GK++++N IF+TI++ + K ++I S T + + T Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Score = 26.9 bits (59), Expect = 4.5
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 18/51 (35%)
Query: 121 LQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSN---VTSIIQFV 168
LQ+ F IL E + + D D+ ++ V + +V
Sbjct: 33 LQEQ-----FNKILPEPTEGFAAD----------DEPTTPAELVGKFLGYV 68
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 34.0 bits (78), Expect = 0.022
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCD-SLEWID 38
IL+ G PGTGK+ + V + I+
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLIN 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 33.0 bits (76), Expect = 0.026
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 35/184 (19%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK-IARE-----NQFYLKYDEQY--EC 58
P ++ G PG+GKST+ + K + +D + I + + EQ
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRI 60
Query: 59 PELDEDKLLDEL---EPRV--QGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVE 113
E+ ++ V GGG + + VY L R
Sbjct: 61 ----EEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTV--VY-LEISAAEGVRRT-- 111
Query: 114 KGQSGKK----LQDNLQCEIFQTILEEARDSYKE--DIVVSLPSNTHDDMSSNVTSIIQF 167
G L + E ++ ++ + Y+ + V + V I+
Sbjct: 112 ---GGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAV---VRHILSR 165
Query: 168 VKQW 171
++
Sbjct: 166 LQVP 169
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 33.3 bits (76), Expect = 0.027
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 12 ITGTPGTGKSTLCEEVVKQ 30
++G PG GKST E K
Sbjct: 79 LSGPPGAGKSTFIEYFGKM 97
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 33.1 bits (75), Expect = 0.030
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPE 60
MS K P I +TG+ G G ST+ + V ++ E + +++ E
Sbjct: 1 MSKKH--PIISVTGSSGAGTSTVKHTFDQIFRRE---GVKAVSIEGDAFHRFNRADMKAE 55
Query: 61 LDE 63
LD
Sbjct: 56 LDR 58
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.8 bits (75), Expect = 0.033
Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 18/170 (10%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDED-KLLD 68
I++ G KST+ ++ K+ I + K E + DED ++D
Sbjct: 4 IILEGPDCCFKSTVAAKLSKELK-YPIIKGSSFELAKSGNEKLFEHFN-KLADEDNVIID 61
Query: 69 EL-EPRVQGGGKIIDYHSA------EMFPERWIDQVYV--LSADNTTLYDRLVEKGQSGK 119
+ K DY S ++ + V L AD + + RL +G +
Sbjct: 62 RFVYSNLVYAKKFKDY-SILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG--DE 118
Query: 120 KLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169
++ I + E ++ + D++ II V+
Sbjct: 119 YIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEI---AKDIIFLVE 165
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.7 bits (74), Expect = 0.035
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 2 SSKRTKPNILITGTPGTGKSTLC 24
++ GT G+GK+TL
Sbjct: 9 HHGMASMIVVFVGTAGSGKTTLT 31
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 32.4 bits (73), Expect = 0.041
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 10 ILITGTPGTGKSTLCEEVVKQ 30
I++ G GKS + +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSV 26
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 32.7 bits (74), Expect = 0.046
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL 50
K L G +GK+TL +++ C + ++VN F L
Sbjct: 169 KRYWLFKGPIDSGKTTLAAALLELCGG-KALNVNLPLDRLNFEL 211
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 32.7 bits (75), Expect = 0.049
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 8 PNILITGTPGTGKST----LCEE 26
P++L +G PGTGK+ L +
Sbjct: 39 PHLLFSGPPGTGKTATAIALARD 61
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 32.3 bits (73), Expect = 0.050
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL 50
+LITG G GKS E+V++ L D + ++++ +
Sbjct: 37 VLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTI 77
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 32.2 bits (74), Expect = 0.051
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 8 PNILITGTPGTGKST----LCEEV 27
P++L +G PGTGK+ L ++
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDL 62
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.9 bits (73), Expect = 0.054
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYE----------CP 59
+ I G +GK+TL ++ + + I V ++ ++ ++Y
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHMDD-HIVERAKRYHTGNEEWFEYYYL 82
Query: 60 ELDEDKLLDELEPRVQGGGKI 80
+ D + L +L +++ ++
Sbjct: 83 QWDVEWLTHQLFRQLKASHQL 103
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 31.8 bits (71), Expect = 0.068
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQC 31
+ K P + GTGK+TL ++++
Sbjct: 1 AGKTMIPLLAFAAWSGTGKTTLLKKLIPAL 30
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 31.6 bits (71), Expect = 0.072
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN 46
+LITG GKS L ++ + L DV + +EN
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQEN 55
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.073
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 10 ILITGTPGTGKSTLCEEVVKQC 31
+ ++G PG+GKSTL +
Sbjct: 25 VALSGAPGSGKSTLSNPLAAAL 46
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.8 bits (71), Expect = 0.081
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 9 NILITGTPGTGKSTLCEEVVKQ---------CDSLEWIDVN--KIARENQFYLKYDEQYE 57
IT + K L +V+ + ++I ++ ++A + Y K
Sbjct: 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS 106
Query: 58 CPELDEDKLLDELE 71
L D L+ L
Sbjct: 107 KENLCGDISLEALN 120
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 31.4 bits (72), Expect = 0.081
Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI--AREN----QFYLKYDEQY--ECPE 60
++++ G G+GKS+L +E+ LE +D + I R + + + E
Sbjct: 9 HLVLIGFMGSGKSSLAQELGLALK-LEVLDTDMIISERVGLSVREIFEELGEDNFRMF-- 65
Query: 61 LDEDKLLDELEPRVQ------GGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEK 114
E L+DEL+ GGG ++ + + + + L D TL RL +K
Sbjct: 66 --EKNLIDELKTLKTPHVISTGGGIVM---HENL---KGLGTTFYLKMDFETLIKRLNQK 117
Query: 115 GQSGKKLQDNLQCEIFQTILEEARDSYKE--DIVVSLPSNTHDDMSSNVTSIIQFV 168
+ + L +NL + + E+ + Y++ ++ + +++++ ++QF+
Sbjct: 118 EREKRPLLNNL--TQAKELFEKRQALYEKNASFII----DARGGLNNSLKQVLQFI 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 31.6 bits (72), Expect = 0.093
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 8 PNILITGTPGTGKSTL 23
P++L G PG GK+T
Sbjct: 47 PHLLFAGPPGVGKTTA 62
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 31.4 bits (71), Expect = 0.099
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 10 ILITGTPGTGKSTLCEEVVKQ 30
I++TG PG GKST + + K
Sbjct: 7 IILTGLPGVGKSTFSKNLAKI 27
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 31.4 bits (71), Expect = 0.10
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 1 MSSKRTKPN-ILITGTPGTGKSTLCEEVVKQCDSLEWIDV------NKIARENQFYLKYD 53
+ + +K I I+G +GK+TL + + K L V K E +
Sbjct: 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH---LPNCSVISQDDFFKPESEIETDKNGF 70
Query: 54 EQYECPE-LDEDKLLDELEPRVQGG 77
QY+ E L+ +K++ + ++
Sbjct: 71 LQYDVLEALNMEKMMSAISCWMESA 95
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 31.6 bits (71), Expect = 0.10
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 4 KRTKPNILITGTPGTGKSTLC 24
+ N+ +TG G+GKS+
Sbjct: 66 DSSVLNVAVTGETGSGKSSFI 86
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 31.1 bits (71), Expect = 0.12
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI----------DVNKIARENQFYL 50
MS+ + I I G +GK+TL + + + E + D+ + E + L
Sbjct: 1 MSAPKPFV-IGIAGGTASGKTTLAQALARTLG--ERVALLPMDHYYKDLGHLPLEER--L 55
Query: 51 KYDEQYECPE-LDEDKLLDELE 71
+ + Y+ P+ D L+ +
Sbjct: 56 RVN--YDHPDAFDLALYLEHAQ 75
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 31.0 bits (71), Expect = 0.13
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 27/179 (15%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV-NKIARE-----NQFYLKYDEQY--EC 58
I + G G G +T+ E+ + E++D +
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALG-YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRR 60
Query: 59 PELDEDKLLDEL--EPRV--QGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEK 114
E + L + RV GGG ++ + + V L A L RL
Sbjct: 61 ----ESEALQAVATPNRVVATGGGMVLLEQNRQFMRAHGT--VVYLFAPAEELALRLQAS 114
Query: 115 GQSGKK--LQDNLQCEIFQTILEEARDSYKE--DIVVSLPSNTHDDMSSNVTSIIQFVK 169
Q+ ++ L E + +L E Y++ VV + ++ V ++Q ++
Sbjct: 115 LQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVV----DATQPPAAIVCELMQTMR 169
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 31.0 bits (71), Expect = 0.15
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 10 ILITGTPGTGKSTLC 24
+ G +GK+TL
Sbjct: 23 TQVYGPYASGKTTLA 37
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 31.2 bits (70), Expect = 0.15
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 3 SKRTKPN----ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYEC 58
R + N +++ G+PG+GKST+ EE+ + + ++ +
Sbjct: 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE-KYHTFLSEHPNVIEVNDRLK---- 70
Query: 59 PELDEDKLLDELEPRVQGGGKIIDYHSAEMFPER 92
P ++ L L+P +F +
Sbjct: 71 PMVNLVDSLKTLQPNKVAEMIENQ----GLFKDH 100
Score = 30.4 bits (68), Expect = 0.28
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 10 ILITGTPGTGKSTLCEEVVK 29
+ GT + V
Sbjct: 122 TAVVARGGTANAIRIAAVDN 141
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 30.9 bits (70), Expect = 0.18
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCD 32
+ I G G GKS CE V ++
Sbjct: 39 LGIWGGKGQGKSFQCELVFRKMG 61
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.5 bits (69), Expect = 0.20
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWI--DVNKIARENQFYLKYDEQYECPELDEDK 65
IL G PG+GKST E + + I D R++ + ++Y+ + E
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDD---YRQSIMAHEERDEYKYTKKKEGI 59
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.4 bits (68), Expect = 0.21
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQ 30
+ G +GK+TL E+ V
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAA 27
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase;
HET: AMP; 2.3A {Homo sapiens}
Length = 199
Score = 30.2 bits (69), Expect = 0.24
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
M R I I G PG+GK T CE++V++
Sbjct: 6 MEDLRKCKIIFIIGGPGSGKGTQCEKLVEK 35
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 30.2 bits (69), Expect = 0.24
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MSSKRTKPNILIT-GTPGTGKSTLCEEVVKQ 30
M K K NI+ G PG+GK T CE++V++
Sbjct: 2 MEEKLKKTNIIFVVGGPGSGKGTQCEKIVQK 32
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 30.2 bits (69), Expect = 0.24
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
M + +I G PG+GK T+ +
Sbjct: 1 MGASARLLRAVIMGAPGSGKGTVSSRITTH 30
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.4 bits (68), Expect = 0.25
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39
+ K K ++ I G GTG +TL + +++ S +
Sbjct: 40 AIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGI 77
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 30.3 bits (68), Expect = 0.27
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 9 NILITGTPGTGKSTLCEEVVKQC 31
++L+ G GTGKS L E+
Sbjct: 55 HLLVNGATGTGKSVLLRELAYTG 77
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 30.2 bits (67), Expect = 0.32
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQ 30
N L+ G GTGK+ + V+++
Sbjct: 43 KPSNALLYGLTGTGKTAVARLVLRR 67
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.0 bits (67), Expect = 0.33
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDE 69
IL G PG+GKST E + + I+ + R++ + ++Y+ + E +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEGIVTGM 63
Query: 70 LEPRVQ 75
+
Sbjct: 64 QFDTAK 69
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 29.7 bits (67), Expect = 0.37
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 5 RTKPNILITGTPGTGKSTL 23
+ + + G+ G GK+ L
Sbjct: 52 KKMKGLYLHGSFGVGKTYL 70
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 29.7 bits (66), Expect = 0.38
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 2 SSKRTKPNILITGTPGTGKSTL 23
+ +R +I++ G G+GKS++
Sbjct: 13 AVRRFPGSIVVMGVSGSGKSSV 34
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 30.0 bits (67), Expect = 0.43
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLE--------WIDVNKIARENQFYLKYDEQYECPEL 61
+ + G G+GKS + + + + D L W+ + A ++ F L D
Sbjct: 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 214
Query: 62 DEDKLLDELE 71
D+ +E
Sbjct: 215 DDLLNFPSVE 224
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 29.1 bits (66), Expect = 0.56
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 1 MSSKRTKP-NILITGTPGTGKSTLCEEVVKQ 30
M+ +++ G PG GK T + ++
Sbjct: 1 MAHHHHHHMRLILLGAPGAGKGTQANFIKEK 31
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 29.0 bits (66), Expect = 0.60
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 1 MSSKRTKPNILITGTPGTGKST 22
M+ KR NI + G G GKST
Sbjct: 1 MAEKR---NIFLVGPMGAGKST 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.0 bits (66), Expect = 0.67
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDS 33
M +++ I+++G G GK T+ + + + +
Sbjct: 1 MDNEKGLL-IVLSGPSGVGKGTVRKRIFEDPST 32
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.0 bits (64), Expect = 0.71
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 10 ILITGTPGTGKSTL 23
+L+ G PG GK+
Sbjct: 164 VLVDGVPGCGKTKE 177
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 28.9 bits (64), Expect = 0.74
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 3 SKRTKPNILITGTPGTGKS 21
S LITGTPG+GK+
Sbjct: 1 SNAMAEICLITGTPGSGKT 19
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 28.7 bits (65), Expect = 0.78
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQ 30
+ ++I+G P +GK T CE + +
Sbjct: 1 ALADPLKVMISGAPASGKGTQCELIKTK 28
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.9 bits (65), Expect = 0.78
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 11 LITGTPGTGKST 22
+I+G PGTGK+T
Sbjct: 168 VISGGPGTGKTT 179
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 29.1 bits (66), Expect = 0.79
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 66 LLDELEPRVQGGGKIIDYHSAE 87
L E+ P G I E
Sbjct: 237 CLGEINPTYVGWRSITYGAKGE 258
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 28.6 bits (64), Expect = 0.82
Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 40/193 (20%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI---ARE----NQFYLKYD 53
+ ++ + G G+GK+T+ + + + + D + + A + + + +
Sbjct: 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG-YTFFDCDTLIEQAMKGTSVAEIFEHFG 100
Query: 54 EQY--ECPELDEDKLLDELEPRVQ------GGGKIIDYHSAEMFPERW--IDQVYV--LS 101
E E E + L +L GGG A + P W + + L
Sbjct: 101 ESVFREK----ETEALKKLSLMYHQVVVSTGGG-------AVIRPINWKYMHKGISIWLD 149
Query: 102 ADNTTLYDRLVEKG--------QSGKKLQDNLQCEIFQTILEEARDSYKE-DIVVSLPSN 152
L R+ G TI + ++Y + VSL +
Sbjct: 150 VPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENI 209
Query: 153 THDDMSSNVTSII 165
T +V+ +
Sbjct: 210 TLKLGYRSVSDLT 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.5 bits (64), Expect = 0.84
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 3 SKRTKPNILITGTPGTGKSTL 23
+ + G+PG GK+ L
Sbjct: 34 NPEEGKGLTFVGSPGVGKTHL 54
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.5 bits (63), Expect = 0.87
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQC 31
+ I GT +GK+TL ++
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPIL 26
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.6 bits (64), Expect = 0.99
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLC 24
M+ K ++ +L G +GK+ L
Sbjct: 1 MARKSSQRAVLFVGLCDSGKTLLF 24
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 28.6 bits (64), Expect = 1.00
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLC 24
+ K +P+I+I G +GK++L
Sbjct: 6 IKQKSYQPSIIIAGPQNSGKTSLL 29
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.5 bits (64), Expect = 1.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 5 RTKPNILITGTPGTGKSTL 23
N+++ G G+GK+T
Sbjct: 169 AIGKNVIVCGGTGSGKTTY 187
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.70A {Plasmodium falciparum}
Length = 187
Score = 28.1 bits (63), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 3 SKRTKPNILITGTPGTGKSTLCE 25
S+RTK N ++ G PG GK+ + E
Sbjct: 39 SRRTKNNPILLGDPGVGKTAIVE 61
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 28.2 bits (63), Expect = 1.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 2 SSKRTKPNILITGTPGTGKSTLC 24
+P+I+I G +GK++L
Sbjct: 43 GGGSYQPSIIIAGPQNSGKTSLL 65
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 28.5 bits (64), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDS 33
IL+ G PGTGKS L + V + +S
Sbjct: 54 ILLYGPPGTGKSYLAKAVATEANS 77
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 1 MSSKRTKPNILITGTPGTGKST 22
MS + NI+ G G+GKST
Sbjct: 1 MSLAK---NIVFIGFMGSGKST 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQ 30
K + + G PG+GK T C +V+
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRD 29
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.3 bits (63), Expect = 1.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 4 KRTKPNILITGTPGTGKSTL 23
+ + + G G GKS L
Sbjct: 149 SAEQKGLYLYGDMGIGKSYL 168
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 5 RTKPNILITGTPGTGKSTL 23
+ + I++ G G+GK+TL
Sbjct: 173 QLERVIVVAGETGSGKTTL 191
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.5 bits (64), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 11 LITGTPGTGKSTLCEEVVKQCDSL 34
++TG PGTGKST + V +SL
Sbjct: 208 VLTGGPGTGKSTTTKAVADLAESL 231
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 1.2
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLE--------WIDVNKIARENQFYLKYDEQYECPEL 61
+ I G G GKS L E V+ LE W+ I ++++ L Q C L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV---SIGKQDKSGLLMKLQNLCMRL 206
Query: 62 DEDKLLDELEPR 73
D+++ + P
Sbjct: 207 DQEESFSQRLPL 218
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 28.1 bits (63), Expect = 1.3
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 14/43 (32%)
Query: 10 ILITGTPGTGKSTLCEEVVK--------------QCDSLEWID 38
+LI PG G L + + C + +
Sbjct: 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQ 69
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 28.1 bits (62), Expect = 1.3
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID---VNKIARENQFYLKYDEQYECP 59
I I G+G + +++ ++ + + D + + ++ ++ +
Sbjct: 10 MGNKNLIITIEREYGSGGRIVGKKLAEELG-IHFYDDDILKLASEKSAVGEQFFRLAD-- 66
Query: 60 ELDEDKLLDEL 70
E + LL L
Sbjct: 67 EKAGNNLLYRL 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 28.2 bits (62), Expect = 1.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 2 SSKRTKPNILITGTPGTGKSTLC 24
S P ++I G TGK++L
Sbjct: 133 MSNFEGPRVVIVGGSQTGKTSLS 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.8 bits (62), Expect = 1.4
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MSSKRTKPN-ILITGTPGTGKSTLCEEVVKQ 30
+ + +P I ++G +GKST+CE++++
Sbjct: 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 3 SKRTKPNILITGTPGTGKSTLCE 25
+RTK N ++ G PG GK+ + E
Sbjct: 39 QRRTKNNPVLIGEPGVGKTAIVE 61
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.1 bits (62), Expect = 1.6
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 10 ILITGTPGTGKSTLC 24
+ G GKS L
Sbjct: 33 GALVSPGGAGKSMLA 47
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 28.3 bits (63), Expect = 1.6
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 9 NILITGTPGTGKSTLCEEVVK 29
++L+ G P L +
Sbjct: 241 HVLLAGYPVVCSEILHHVLDH 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.5 bits (62), Expect = 1.6
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLE 35
++++G GKST+ + ++ +L
Sbjct: 23 VVLSGPSAVGKSTVVRCLRERIPNLH 48
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 28.0 bits (63), Expect = 1.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 9 NILITGTPGTGKSTL 23
+ILI G PGT KS +
Sbjct: 329 HILIIGDPGTAKSQM 343
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 27.4 bits (62), Expect = 2.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
M S + + G GTGKS++ + +
Sbjct: 5 MVSG--SLVVAVDGPAGTGKSSVSRGLARA 32
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.8 bits (61), Expect = 2.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 9 NILITGTPGTGKSTL 23
+++ G G GKSTL
Sbjct: 10 TLMVVGESGLGKSTL 24
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDS 33
I+++G G GK T+ E V K ++
Sbjct: 11 IVLSGPSGVGKGTVREAVFKDPET 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET:
ERY UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 27.8 bits (62), Expect = 2.1
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 1 MSSKRTKPNILITGTPGTG 19
M+++ T +I + G
Sbjct: 1 MTTQTTPAHIAMFSIAAHG 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDS 33
IL+ G PGTGK+ + + + Q +
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGA 143
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 27.3 bits (60), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 10 ILITGTPGTGKSTLCEEVVK 29
+LITG G GKS E++K
Sbjct: 147 VLITGDSGIGKSETALELIK 166
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 27.3 bits (61), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDS 33
IL+ G PGTGKS L + V + ++
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANN 71
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 27.5 bits (61), Expect = 2.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQCDS 33
+++ IL+ G PGTGKS L + V + +S
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANS 110
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.6 bits (60), Expect = 2.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 10 ILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIARENQFYLKYDEQY 56
IL+ G G GK+T+ K+ ++ ID + ++ YL+ ++Y
Sbjct: 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEY 82
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.5 bits (60), Expect = 2.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 9 NILITGTPGTGKSTL 23
+++ G G GKSTL
Sbjct: 20 TLMVVGESGLGKSTL 34
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.1 bits (61), Expect = 2.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 2 SSKRTKPNILITGTP-GTGKSTLCEEVVKQCDSLE 35
S+ K N+ I P G GK++L +VK ++
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIK 35
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 27.5 bits (61), Expect = 2.6
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLL 67
P++L+ G GTGK T C +++ + V ++ + + ++ + +
Sbjct: 37 PHLLLYGPNGTGKKTRCMALLES---IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93
Query: 68 DELEPRVQGG 77
E+ P G
Sbjct: 94 LEITPSDMGN 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.4 bits (60), Expect = 2.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYD 53
P L+ G GKS+L + + + ID ++ E + +
Sbjct: 31 YPLTLLLGIRRVGKSSLLRAFLNERPGI-LIDCRELYAERGHITREE 76
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 27.6 bits (61), Expect = 2.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQC 31
+P LI G PGTGK+ +V
Sbjct: 374 QRPLSLIQGPPGTGKTVTSATIVYHL 399
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 10 ILITGTPGTGKST 22
+L+TG G+GKST
Sbjct: 126 VLVTGPTGSGKST 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 27.2 bits (61), Expect = 2.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
S +I G PG+GK T+C+ + +
Sbjct: 21 QSMASKLLRAVILGPPGSGKGTVCQRIAQN 50
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 27.2 bits (60), Expect = 3.0
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL 50
K + G P TGKS LC + L ++ ++ F+L
Sbjct: 126 KNCLAFIGPPNTGKSMLCNSL---IHFLGGSVLSFANHKSHFWL 166
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 27.2 bits (60), Expect = 3.1
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 13/73 (17%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ--FYLKYDEQ--------YECP 59
I I G+ GKST + W + ++ F P
Sbjct: 83 ISIAGSVAVGKSTTARVLQAL--LSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFP 140
Query: 60 E-LDEDKLLDELE 71
E D +L+ +
Sbjct: 141 ESYDMHRLVKFVS 153
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.8 bits (60), Expect = 3.1
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
+ + K +++ G G G+S + ++ Q
Sbjct: 14 LYFQGRKT-LVLIGASGVGRSHIKNALLSQ 42
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 26.9 bits (59), Expect = 3.3
Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 23/170 (13%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ--FYLKYDE--------QYECP 59
I I G+ GKST + W D + F + + P
Sbjct: 95 IGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFP 152
Query: 60 E-LDEDKLLDELEPRVQGGGKIIDY-------HSAEMFPERWIDQVYVLSAD-NTTLYDR 110
E D LL L ++ G + + + +DQ ++ + L
Sbjct: 153 ESYDMPSLLRVLN-AIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211
Query: 111 LVEKGQSGKK-LQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSS 159
+ + Q + + D +F + + D V+S T D S
Sbjct: 212 VRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHS 261
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 10 ILITGTPGTGKST 22
IL+TG G+GKST
Sbjct: 139 ILVTGPTGSGKST 151
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 27.1 bits (60), Expect = 3.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDS 33
+L+ G PG GK+ L + V + ++
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNA 174
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.2 bits (60), Expect = 3.5
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40
+++ G PG+GK+ ++ E + +N
Sbjct: 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLN 1337
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDS 33
+L+ G PG GK+ L V +C +
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSA 80
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 26.8 bits (60), Expect = 3.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 10 ILITGTPGTGKST 22
IL+TG G+GKST
Sbjct: 28 ILVTGPTGSGKST 40
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 3.7
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQ 30
S K +++ G G G+ + ++ +
Sbjct: 2 SHMRKT-LVLLGAHGVGRRHIKNTLITK 28
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.7 bits (59), Expect = 3.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 10 ILITGTPGTGKSTLCEEVVKQ 30
I ++G +GKS++C ++V+
Sbjct: 25 IGVSGGTASGKSSVCAKIVQL 45
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 26.3 bits (59), Expect = 3.8
Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 34/178 (19%)
Query: 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDV-NKIARE-----NQFYLKYDEQY--ECPE 60
I + G +GKST+ + + + + + DV ++ + Q + K E Y +
Sbjct: 2 RIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKL-- 58
Query: 61 LDEDKLLDEL---EPRV--QGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKG 115
E ++L +L E V GGG + + R + +R
Sbjct: 59 --EFEVLKDLSEKENVVISTGGGLGANEEALNFMKSRGT--TVFIDIPFEVFLERC---- 110
Query: 116 QSGKK---LQDNLQCEIFQTILEEARDSYKE-DIVVSLPSNTHDDMSSNVTSIIQFVK 169
+ K+ L+ L + + + EE R Y + DI V V I+ ++
Sbjct: 111 KDSKERPLLKRPL--DEIKNLFEERRKIYSKADIKV----KGEKPPEEVVKEILLSLE 162
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 26.7 bits (59), Expect = 3.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 8 PNILITGTPGTGKSTLC 24
+L+ G G GKS+
Sbjct: 37 MTVLVLGKGGVGKSSTV 53
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 26.3 bits (59), Expect = 4.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 9 NILITGTPGTGKSTLCEEVVKQ 30
+ + G PG GK T C +V++
Sbjct: 5 VVFVLGGPGAGKGTQCARIVEK 26
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 26.9 bits (59), Expect = 4.1
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 103 DNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMS 158
N + + + L D + + + D++ + H+DM+
Sbjct: 305 ANQEIAAMIDTEFAKQTSL-DAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMT 359
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 26.6 bits (60), Expect = 4.1
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQ 30
+ + I G +GKS++ V
Sbjct: 2 RGIVTIDGPSASGKSSVARRVAAA 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 26.7 bits (59), Expect = 4.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQ 30
P++L G PGTGK++ + K+
Sbjct: 59 PHMLFYGPPGTGKTSTILALTKE 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 26.6 bits (59), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 8 PNILITGTPGTGKST----LCEE 26
P++L G PGTGK++ L E
Sbjct: 47 PHLLFYGPPGTGKTSTIVALARE 69
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 26.6 bits (59), Expect = 4.6
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 61 LDEDKLLDELEPRVQ-GGGKIIDY 83
D+ L E VQ G +I
Sbjct: 213 KDDSWLKGEFITTVQQRGAAVIKA 236
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 26.5 bits (57), Expect = 4.6
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 10 ILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIARENQFYLKYDEQYE 57
L+ G PG+GK++L + ++ ++ ID + +++ + + + YE
Sbjct: 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYE 84
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 26.4 bits (59), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQ 30
I + G PG GK T CE++VK
Sbjct: 16 SVIFVLGGPGAGKGTQCEKLVKD 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 26.5 bits (58), Expect = 4.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39
IL+ G PGTGKS L + V + ++ + +
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSI 199
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 26.6 bits (58), Expect = 4.9
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42
++ + ++ TG PGTGK+T+ ++ L ++ +
Sbjct: 61 LAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 26.2 bits (59), Expect = 4.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQ 30
NI + G GKST+ + V +
Sbjct: 2 KAINIALDGPAAAGKSTIAKRVASE 26
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 26.4 bits (58), Expect = 5.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 1 MSSKRTKPN-ILITGTPGTGKSTLCEEVVKQC 31
+ K K N I + G TGK+ + E +
Sbjct: 97 ATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 26.6 bits (58), Expect = 5.4
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQCDSL-EWIDVNKIARENQFYLK 51
P L+ G TGKS++ + + + + ++D+ K N K
Sbjct: 30 APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYK 75
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 26.3 bits (58), Expect = 5.7
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 10 ILITGTPGTGKSTL------CEEVVKQC--DSLEWI------DVNKIARENQFYLKYDEQ 55
+ I G G GKS L +++ C + W+ + + + D+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 56 Y---ECPELDEDKLLDELEPRVQGGGK 79
+ L+ ++ D L +
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHP 236
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 26.0 bits (58), Expect = 6.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQ 30
+ + G PG+GK T + K
Sbjct: 24 CLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 25.6 bits (57), Expect = 6.2
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 5 RTKPNILITGTPGTGKSTLCEEVV 28
+ + +TG G+ E V
Sbjct: 25 KRTSPVFLTGEAGSPF-----ETV 43
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 26.1 bits (57), Expect = 6.5
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40
I++ G P GK+ + K L +I V
Sbjct: 38 CPTLIVMVGLPARGKTYIS---KKLTRYLNFIGVP 69
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 25.9 bits (58), Expect = 6.7
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSL 34
++++G G GKSTL +++ ++ S+
Sbjct: 7 VVLSGPSGAGKSTLLKKLFQEHSSI 31
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 26.1 bits (58), Expect = 6.8
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 2 SSKRTKPN-ILITGT-PGTGKSTLC 24
+ T+ N ++ITG P +GK+ +
Sbjct: 98 AMMETENNILMITGATPDSGKTFVS 122
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 26.1 bits (58), Expect = 7.0
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 2 SSKRTKPN-ILITGT-PGTGKSTLC 24
+ + + N +++TG P G + +C
Sbjct: 86 AMMQAQNNVLMMTGVSPSIGMTFVC 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 25.6 bits (57), Expect = 7.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 5 RTKPNILITGTPGTGK 20
T + + G PGTG+
Sbjct: 22 ETDIAVWLYGAPGTGR 37
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 26.3 bits (58), Expect = 7.0
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 5 RTKPNILITGTPGTGKSTL 23
K + ++ G +GK+T
Sbjct: 258 EHKFSAIVVGETASGKTTT 276
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 26.1 bits (58), Expect = 7.0
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 61 LDEDKLLDELEPRVQ-GGGKIIDY 83
+D + P V G II
Sbjct: 209 VDMEWYEKVFIPTVAQRGAAIIQA 232
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 26.1 bits (57), Expect = 7.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQC 31
+P LI G PGTGK+ +V
Sbjct: 370 QRPLSLIQGPPGTGKTVTSATIVYHL 395
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 25.8 bits (57), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 8 PNILITGTPGTGKST----LCEE 26
P+++I+G PG GK+T L E
Sbjct: 43 PHMIISGMPGIGKTTSVHCLAHE 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 26.0 bits (57), Expect = 8.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 5 RTKPNILITGTPGTGKST 22
R K ++ PG GK+
Sbjct: 17 RKKRLTIMDLHPGAGKTK 34
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 25.7 bits (56), Expect = 8.4
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY 49
R + +++ G GTGKS L ++ E I+ +K+ Q Y
Sbjct: 34 RQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPL-EVINSDKM----QVY 77
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 25.6 bits (56), Expect = 8.4
Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 1 MSSKRTKPNILITGTPGTG 19
M K ILI G GTG
Sbjct: 5 MEENGMKSKILIFG--GTG 21
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 25.8 bits (56), Expect = 8.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40
+ I++ G P GK+ + K L WI V
Sbjct: 34 SPTVIVMVGLPARGKTYIS---KKLTRYLNWIGVP 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 26.0 bits (58), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 3 SKRTKPN-ILITGTPGTGK 20
+RTK N +LI G PG GK
Sbjct: 187 LRRTKNNPVLI-GEPGVGK 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 26.1 bits (58), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 3 SKRTKPNILITGTPGTGKSTLCE 25
+R K N L+ G G GK+ + E
Sbjct: 203 CRRRKNNPLLVGESGVGKTAIAE 225
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 25.7 bits (57), Expect = 8.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MSSKRTKPNILITGTPGTGKSTL 23
I +TG G GK+TL
Sbjct: 19 YFQSNAMVRIFLTGYMGAGKTTL 41
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national P protein structural and
functional analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 25.6 bits (57), Expect = 8.8
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 1 MSSKRTKPN------ILITGTPGTGKSTLCEEVVKQ 30
M + T + +TG PG+GK+T+ +
Sbjct: 1 MQALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADL 36
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 25.5 bits (57), Expect = 8.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQ 30
I I G +GKST+ + + K
Sbjct: 15 KTIQIAIDGPASSGKSTVAKIIAKD 39
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 25.6 bits (56), Expect = 8.9
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 12 ITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIA----RENQFYLKYDEQY-ECPELDEDK 65
G TGK+ L + EN F + +D D
Sbjct: 127 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDA 186
Query: 66 LLDEL 70
+LD +
Sbjct: 187 VLDNV 191
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 25.6 bits (57), Expect = 9.1
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 9 NILITGTPGTGKSTLCEEVVKQ 30
I++ G P GK T + ++++
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEK 23
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 25.6 bits (57), Expect = 9.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 1 MSSKRTKPNILITGTP-GTGKSTLCEEVVKQ 30
+ + I P G GKS+L + ++K
Sbjct: 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKT 39
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 25.8 bits (56), Expect = 9.2
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39
I + G G GKST +
Sbjct: 10 IYLDGVYGIGKSTTGRVMASAASGGSPTLY 39
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 25.7 bits (56), Expect = 9.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 9 NILITGTPGTGKSTL 23
IL+ G G GKS+
Sbjct: 41 TILVMGKGGVGKSST 55
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 25.7 bits (56), Expect = 9.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 10 ILITGTPGTGKSTLCEEVVK 29
+L+TG G GKS +++
Sbjct: 150 VLLTGRSGIGKSECALDLIN 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.387
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,658,072
Number of extensions: 151449
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 229
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.7 bits)