BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6664
(624 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332022364|gb|EGI62676.1| RNA polymerase II-associated factor 1-like protein [Acromyrmex
echinatior]
Length = 581
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/381 (79%), Positives = 329/381 (86%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT S +KR RPAE+RSEL+CRVKY NTLPDIPFD KFIAYP
Sbjct: 1 MAPTIQTNSNQADRDKRV---------VRPAEKRSELICRVKYCNTLPDIPFDPKFIAYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE TRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FEPTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDPNAQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTE TRFQPQ DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTESTRFQPQTADKVEAKVGYSIKKNFKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K PIE+HYSKPNV P+EI+PVYPDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKPIERHYSKPNVVPIEILPVYPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KR+ D + ++Y DE+EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADEEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLNA EFR+QR RE+ LEPP
Sbjct: 352 RPLNANEFRMQRYREKQLEPP 372
>gi|307199453|gb|EFN80066.1| RNA polymerase II-associated factor 1-like protein [Harpegnathos
saltator]
Length = 530
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/381 (78%), Positives = 328/381 (86%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + +KR P RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNTNQADRDKR---------PARPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE +RFI Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FEPSRFIRYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDPNAQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTE TRFQPQ +DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTETTRFQPQSVDKVEAKVGYSIKKNFKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K PIE+HYSKPNV PVEI+P+YPDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKPIERHYSKPNVIPVEILPIYPDFKLWKYPCAQVIFDSDPAPSG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETLDKR+ D + ++Y DE+EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLDKRRRDFTAGIDYADEEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQK G PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVMRQDGVYYNELETRVRLSKRRQKAGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLNA EFR+QR RE+ LEPP
Sbjct: 352 RPLNALEFRMQRYREKQLEPP 372
>gi|307172366|gb|EFN63837.1| RNA polymerase II-associated factor 1-like protein [Camponotus
floridanus]
Length = 428
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/381 (78%), Positives = 328/381 (86%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT S +KRT RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNSNQADRDKRTT---------RPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE TRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FEPTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDINAQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHA+SVSWLRRTEYISTE TRFQPQ DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 112 LTPQDSKRSRHHAKSVSWLRRTEYISTESTRFQPQTADKVEAKVGYSIKKNFKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+KAIEKTF D+K PIE+HYSK NV P+E++PVYPDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RDSQIKAIEKTFEDNKKPIERHYSKANVVPIEVLPVYPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KR+ D + ++Y D++EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADDEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLNA EFR+QR RE+ LEPP
Sbjct: 352 RPLNANEFRMQRYREKQLEPP 372
>gi|307213815|gb|EFN89122.1| RNA polymerase II-associated factor 1-like protein [Harpegnathos
saltator]
Length = 533
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/381 (78%), Positives = 325/381 (85%), Gaps = 11/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT T P RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTN-----------QTERDKHPARPAEKRSELICRVKYCNTLPDIPFDPKFITYP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE +RFI Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 50 FEPSRFIRYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDPNAQLDPADEKLLEEDV 109
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTE TRFQPQ +DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 110 LTPQDSKRSRHHARSVSWLRRTEYISTETTRFQPQSVDKVEAKVGYSIKKNFKEETLYMD 169
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K PIE+HYSKPNV PVEI+PVYPDFK WKYPCAQVIFDSDPAP G
Sbjct: 170 RESQIKAIEKTFEDNKKPIERHYSKPNVIPVEILPVYPDFKLWKYPCAQVIFDSDPAPSG 229
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETLDKR+ D + ++Y DE+EYEYKM
Sbjct: 230 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLDKRRRDFTAGIDYADEEEYEYKM 289
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQK G PNNTRL+V H
Sbjct: 290 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKAGQQPNNTRLIVRH 349
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLNA EFR+QR RE+ LEPP
Sbjct: 350 RPLNAIEFRMQRYREKQLEPP 370
>gi|340728168|ref|XP_003402400.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Bombus
terrestris]
Length = 562
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 296/378 (78%), Positives = 325/378 (85%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT +KRT RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNGNTAERDKRTT---------RPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F STRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FASTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDLNAQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQ +DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQTVDKVEAKVGYSIKKNFKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K IE+HYSKPNV PVEI+PV+PDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKSIERHYSKPNVVPVEILPVFPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KR+ D + ++Y D+ EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRRRDFAAGIDYADDDEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPLNA EF++QR RE+ L
Sbjct: 352 RPLNANEFKMQRYREKQL 369
>gi|380011783|ref|XP_003689974.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Apis
florea]
Length = 548
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/378 (78%), Positives = 327/378 (86%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT +KRT RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNGNTAERDKRTA---------RPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FESTRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FESTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDVNSQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQ +DKVEAKVG+SIKKN KE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQTVDKVEAKVGYSIKKNLKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K PIE+HYSKPNV PVEI+PV+PDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKPIERHYSKPNVVPVEILPVFPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KR+ D + ++Y D++EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADDEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPLNA EF++QR RE+ L
Sbjct: 352 RPLNANEFKMQRYREKQL 369
>gi|328787903|ref|XP_624998.3| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Apis mellifera]
Length = 549
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/378 (78%), Positives = 327/378 (86%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT +KRT RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNGNTAERDKRTA---------RPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FESTRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FESTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDVNSQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQ +DKVEAKVG+SIKKN KE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQTVDKVEAKVGYSIKKNLKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K PIE+HYSKPNV PVEI+PV+PDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKPIERHYSKPNVVPVEILPVFPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KR+ D + ++Y D++EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADDEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPLNA EF++QR RE+ L
Sbjct: 352 RPLNANEFKMQRYREKQL 369
>gi|383850476|ref|XP_003700821.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Megachile
rotundata]
Length = 554
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/378 (78%), Positives = 325/378 (85%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT +KR RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNGNAAERDKRAV---------RPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FESTRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FESTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDVNAQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQ +DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQTVDKVEAKVGYSIKKNFKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K IE+HYSK NV PVEI+PV+PDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKSIERHYSKANVVPVEILPVFPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETLDKR+ D + ++Y D++EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLDKRRRDFTAGIDYADDEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPLNA EF++QR RE+ L
Sbjct: 352 RPLNANEFKMQRYREKQL 369
>gi|350403064|ref|XP_003486690.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Bombus
impatiens]
Length = 562
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/378 (78%), Positives = 325/378 (85%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT +KRT RPAE+RSEL+CRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTNGNTAERDKRTT---------RPAEKRSELICRVKYCNTLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F STRFI+Y TSLERNYKYEVLTEHDLGV IDLINKDTYA + N QLDPADEKLLEED+
Sbjct: 52 FASTRFIQYNPTSLERNYKYEVLTEHDLGVEIDLINKDTYAGDVNAQLDPADEKLLEEDV 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQ +DKVEAKVG+SIKKNFKE+ LYMD
Sbjct: 112 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQTVDKVEAKVGYSIKKNFKEETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+KAIEKTF D+K IE+HYSKPNV PVEI+PV+PDFK WKYPCAQVIFDSDPAP G
Sbjct: 172 RESQIKAIEKTFEDNKKSIERHYSKPNVVPVEILPVFPDFKLWKYPCAQVIFDSDPAPTG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KR+ D + ++Y D+ EYEYKM
Sbjct: 232 RSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRRRDFAAGIDYADDDEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPLNA EF++QR RE+ L
Sbjct: 352 RPLNANEFKMQRYREKQL 369
>gi|156550709|ref|XP_001605818.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nasonia
vitripennis]
Length = 583
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/384 (74%), Positives = 322/384 (83%), Gaps = 15/384 (3%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTIQ +A +KR RP E+R EL+C+VKY NTLPDI FD KFI+YP
Sbjct: 1 MPPTIQNGAA----DKRGAV--------RPTEKRLELICKVKYCNTLPDIAFDPKFISYP 48
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYA--PNYNIQLDPADEKLLEE 118
FESTRFI+Y TSLERNYKYEVLTEHDLGV IDLIN+DTYA P ++DP DEKLLEE
Sbjct: 49 FESTRFIQYNPTSLERNYKYEVLTEHDLGVPIDLINRDTYACDPKIPYEMDPLDEKLLEE 108
Query: 119 DILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVM-DKVEAKVGFSIKKNFKEDNL 177
D++T QDSKRS+HHA+SVSWLRRTEYISTEQTRFQPQ DKVEAKVG +IKK+FKE+ L
Sbjct: 109 DVITQQDSKRSKHHAKSVSWLRRTEYISTEQTRFQPQTTSDKVEAKVGHNIKKHFKEETL 168
Query: 178 YMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPA 237
YMDRDSQ++AIEKTF D+K PIE HYSKPNVTPVE+ P+YPDFK WKYPCAQVIFDSDPA
Sbjct: 169 YMDRDSQIRAIEKTFEDNKKPIETHYSKPNVTPVEVFPIYPDFKIWKYPCAQVIFDSDPA 228
Query: 238 PVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYE 297
P+G +PAQIEEMSQAMIRGVMDESGEQFVAYFLP ETL+KRK D S ++Y DE EYE
Sbjct: 229 PMGLSVPAQIEEMSQAMIRGVMDESGEQFVAYFLPLEETLEKRKRDFCSGIDYADEDEYE 288
Query: 298 YKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLV 357
YKMAREYNWNVKSK+ KGYEENYFL++R+D VYYNELETRVRLSKRRQKVGA NNTRLV
Sbjct: 289 YKMAREYNWNVKSKASKGYEENYFLVMREDGVYYNELETRVRLSKRRQKVGAPVNNTRLV 348
Query: 358 VTHRPLNATEFRIQRLRERFLEPP 381
V HRPLNA E+++QR RE+ LEPP
Sbjct: 349 VRHRPLNANEYKMQRFREKQLEPP 372
>gi|242010931|ref|XP_002426211.1| RNA polymerase-associated protein, putative [Pediculus humanus
corporis]
gi|212510262|gb|EEB13473.1| RNA polymerase-associated protein, putative [Pediculus humanus
corporis]
Length = 472
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/378 (74%), Positives = 319/378 (84%), Gaps = 10/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPT+QT ++++ R AE+R+ELVCR+KY NTLPDIPFD KFI YP
Sbjct: 1 MAPTVQTNKVPDRDQRQS----------RNAEKRTELVCRIKYCNTLPDIPFDPKFIQYP 50
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F++ RFI YK T+LERNYKYEVLTEHDLGVTIDLINKD Y LDPADEKLLEED+
Sbjct: 51 FDAARFISYKPTTLERNYKYEVLTEHDLGVTIDLINKDAYNAEIGATLDPADEKLLEEDV 110
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDS RSRHHARSVSWLRRTEYISTEQTRFQPQ MDKVEAKVG+SIKKNFKED L MD
Sbjct: 111 LTPQDSIRSRHHARSVSWLRRTEYISTEQTRFQPQTMDKVEAKVGYSIKKNFKEDPLIMD 170
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ++AIEKTF DS PIEKHYSKPNV P+EI+PV+PDF WKYPCAQVIFDSDPAPVG
Sbjct: 171 RESQIRAIEKTFEDSLKPIEKHYSKPNVYPIEILPVFPDFDGWKYPCAQVIFDSDPAPVG 230
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
R +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT ETL KRK D +N++Y D+QEYEYKM
Sbjct: 231 RSVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEETLAKRKADIQNNIDYEDDQEYEYKM 290
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYFL+VR+ +YYNELETRVRLSKRRQK G AP+NTRLV+ H
Sbjct: 291 AREYNWNVKNKASKGYEENYFLVVREGGMYYNELETRVRLSKRRQKPGQAPSNTRLVIKH 350
Query: 361 RPLNATEFRIQRLRERFL 378
RP+N E+++QR RE+ L
Sbjct: 351 RPINEVEYKMQRFREKQL 368
>gi|328722735|ref|XP_001944291.2| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Acyrthosiphon pisum]
Length = 568
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 323/583 (55%), Positives = 401/583 (68%), Gaps = 42/583 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPT+Q +A EKR P R E+RS+LVC+VKY N LPDIPFD KF++YP
Sbjct: 1 MAPTVQNNTA---QEKR---------PQRVVEKRSDLVCKVKYCNMLPDIPFDLKFLSYP 48
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F++TR+I+Y TSLER+YK+E+L +HDLG+ IDL+NKD Y +YN+Q+D ADEKLLEED+
Sbjct: 49 FDATRYIQYNPTSLERSYKFEILADHDLGLNIDLVNKDKYTIDYNLQMDNADEKLLEEDV 108
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
L PQDSKRSRHHARSVSWLRRTEYISTE+TRFQPQ ++KVEAKVGFSI+KNFKE+ LYMD
Sbjct: 109 LAPQDSKRSRHHARSVSWLRRTEYISTEKTRFQPQTIEKVEAKVGFSIQKNFKEETLYMD 168
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+KAIEKTF D+K P+EKHYSKPNV VE + V+PDFK W++PCAQVIFDSDPAP+G
Sbjct: 169 RDSQMKAIEKTFEDNKKPVEKHYSKPNVHAVETLNVFPDFKNWRFPCAQVIFDSDPAPMG 228
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
RP+PAQIEEMSQAMIRGVMDESGEQFVAYFLP+ ET+ KR+ D + Y D+ EYEYKM
Sbjct: 229 RPVPAQIEEMSQAMIRGVMDESGEQFVAYFLPSEETIVKRREDAVEARPYDDDYEYEYKM 288
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG--AAPNNTRLVV 358
AREYNWNVKSKS KGYEENYF IV+ D VYYNELETRVRLSKRRQK+G ++ NTRL+V
Sbjct: 289 AREYNWNVKSKSSKGYEENYFFIVQSDGVYYNELETRVRLSKRRQKIGTQSSSTNTRLIV 348
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
H P+N EF + + RE+ L+P DEEEE + E ++ E + +
Sbjct: 349 RHVPINEQEFSVHKFREKQLQP-------YDEEEEAKAEEAAKKAMQAAKESAKEIATKN 401
Query: 419 EGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGS------------ 466
+ + ++DNE R D++ + S S + S AKR+ S +
Sbjct: 402 KADSDDDDDNESRKGDSKKNDLVSDSDVSDDDEERLATSKAKRAISETVDSDKEKNKKRL 461
Query: 467 -ASSRGSNKSDRSAKSDRSAK----SDRSARSDRSDKSAASNRSRSGSAASN---KSRSD 518
A+S ++ SD SAK S K SD S +SD + A S+SG + K S
Sbjct: 462 RAASEVNSDSDTSAKKSNSHKVSSGSDESDKSDEEGITKAKESSQSGDSEEERKVKRVSS 521
Query: 519 RSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDKSASNR 561
+RS S SD S KS S A++ S+ +D SD+ SNR
Sbjct: 522 EARSDSDNSDVEMRSKKSSERGASEANSDSSITDNSDQE-SNR 563
>gi|195396015|ref|XP_002056628.1| GJ11046 [Drosophila virilis]
gi|194143337|gb|EDW59740.1| GJ11046 [Drosophila virilis]
Length = 567
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 253/381 (66%), Positives = 313/381 (82%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVNSAAEKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + QLDPADEKLLEE+
Sbjct: 52 FDGNRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADPMSQLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAP G
Sbjct: 172 RDAQIKAIEKTFSDTKNDITKHYSKPNVVPVEVLPIFPDFTNWKYPCAQVIFDSDPAPQG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT TL+KR++D ++ Y D++EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEPTLEKRRIDFVAGELYKDDEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPL+A E R+QR RER LE P
Sbjct: 352 RPLDAMEHRMQRYRERQLEVP 372
>gi|195111787|ref|XP_002000458.1| GI10242 [Drosophila mojavensis]
gi|193917052|gb|EDW15919.1| GI10242 [Drosophila mojavensis]
Length = 575
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 255/381 (66%), Positives = 314/381 (82%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKR PPR ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVNSATEKR---------PPRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + QLDPADEKLLEE+
Sbjct: 52 FDSNRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADPMSQLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAP G
Sbjct: 172 RDAQIKAIEKTFSDTKNEITKHYSKPNVVPVEVLPIFPDFINWKYPCAQVIFDSDPAPQG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT TL+KR+ D ++ Y D++EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTETTLEKRRADFVAGQLYKDDEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPL+A E R+QR RER LE P
Sbjct: 352 RPLDAMEHRMQRYRERQLEVP 372
>gi|270001899|gb|EEZ98346.1| hypothetical protein TcasGA2_TC000801 [Tribolium castaneum]
Length = 465
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 260/332 (78%), Positives = 290/332 (87%)
Query: 49 DIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQL 108
DIPFD KFI+YPF+S+RFI++ TSLERNY+YEVLTEHDLGV IDLINKD YA L
Sbjct: 11 DIPFDLKFISYPFDSSRFIQFNPTSLERNYRYEVLTEHDLGVAIDLINKDIYAVEPGAML 70
Query: 109 DPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSI 168
DPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQ MDKVEAKVG+SI
Sbjct: 71 DPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQSMDKVEAKVGYSI 130
Query: 169 KKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCA 228
KKN K + LYMDRDSQ+KAIEKTF+D+ PIEKHYSKPNVT VE++PV+PDF WKYPCA
Sbjct: 131 KKNLKNETLYMDRDSQIKAIEKTFSDTTNPIEKHYSKPNVTAVEVLPVFPDFNLWKYPCA 190
Query: 229 QVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNL 288
QVIFDSDPAPVG+ +PAQIEEMSQAMIRGVMDE GEQFVAYFLPT ETL KR+ D + +
Sbjct: 191 QVIFDSDPAPVGKQVPAQIEEMSQAMIRGVMDERGEQFVAYFLPTEETLVKRREDFANEI 250
Query: 289 EYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
Y D++EYEYKMAREYNWNVKSK+ KGYEENYF ++R D YYNELETRVRLSKRRQKVG
Sbjct: 251 PYQDDEEYEYKMAREYNWNVKSKASKGYEENYFFVIRQDGAYYNELETRVRLSKRRQKVG 310
Query: 349 AAPNNTRLVVTHRPLNATEFRIQRLRERFLEP 380
+NTRL+V HRP++A EFR+QR RE+ LEP
Sbjct: 311 QPASNTRLIVKHRPMDANEFRMQRYREKQLEP 342
>gi|195497149|ref|XP_002095980.1| GE25435 [Drosophila yakuba]
gi|194182081|gb|EDW95692.1| GE25435 [Drosophila yakuba]
Length = 536
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 251/376 (66%), Positives = 311/376 (82%), Gaps = 9/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKRT R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVSSAAEKRTQ---------RQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTMLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAPVG
Sbjct: 172 RDAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFTNWKYPCAQVIFDSDPAPVG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRTDFIAGELYKDEEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRER 376
RPL++ E R+QR RER
Sbjct: 352 RPLDSMEHRMQRYRER 367
>gi|157117813|ref|XP_001653048.1| hypothetical protein AaeL_AAEL001339 [Aedes aegypti]
gi|108883312|gb|EAT47537.1| AAEL001339-PA [Aedes aegypti]
Length = 549
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/381 (72%), Positives = 316/381 (82%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQ + +KR RP ERRSEL+ RVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQNGTNA--PDKRGAVA-------RPQERRSELISRVKYCNTLPDIPFDLKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE+ RFI+YK TSLERNY+YEVLTEHDLGVTIDLIN+D Y ++ QLDPADEKLLEEDI
Sbjct: 52 FENDRFIQYKPTSLERNYRYEVLTEHDLGVTIDLINRDLYQIDHLAQLDPADEKLLEEDI 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
TPQDS RS HA+SVSWLR++EYISTEQTRFQPQ M+KVEAKVGF++K++ +E+ LYMD
Sbjct: 112 HTPQDSLRSSRHAKSVSWLRKSEYISTEQTRFQPQTMEKVEAKVGFNVKQSLREETLYMD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R++Q+KAIEKTF D+ I HYSKP VTPVEI+PV+PDF WKYPCAQVIFD DPAP G
Sbjct: 172 REAQIKAIEKTFDDNTKEITAHYSKPGVTPVEILPVFPDFANWKYPCAQVIFDFDPAPAG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLP+ ETL+KR+ D ++ Y DE+EYEYKM
Sbjct: 232 KNVPAQMEEMSQAMIRGVMDESGEQFVAYFLPSEETLEKRRRDLVNETLYEDEEEYEYKM 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENYFL++R D +YYNELETRVRLSKRRQKVG PNNT+LVV H
Sbjct: 292 AREYNWNVKSKASKGYEENYFLVLRQDGMYYNELETRVRLSKRRQKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLNA+E R+QR RER LEPP
Sbjct: 352 RPLNASEHRMQRYRERQLEPP 372
>gi|194898602|ref|XP_001978858.1| GG12571 [Drosophila erecta]
gi|190650561|gb|EDV47816.1| GG12571 [Drosophila erecta]
Length = 538
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 251/378 (66%), Positives = 312/378 (82%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVNSAAEKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAPVG
Sbjct: 172 RDAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFTNWKYPCAQVIFDSDPAPVG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQA+IRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYK+
Sbjct: 232 KNVPAQLEEMSQALIRGVMDESGEQFVAYFLPTEQTLEKRRTDFIAGELYKDEEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL++ E R+QR RER L
Sbjct: 352 RPLDSMEHRMQRYRERQL 369
>gi|195054373|ref|XP_001994099.1| GH22996 [Drosophila grimshawi]
gi|193895969|gb|EDV94835.1| GH22996 [Drosophila grimshawi]
Length = 566
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 253/381 (66%), Positives = 313/381 (82%), Gaps = 9/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++A + +EKR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSTANSAAEKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + QLDPADEKLLEE+
Sbjct: 52 FDSNRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMSQLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
+TP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 MTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAP G
Sbjct: 172 RDAQIKAIEKTFIDTKSDITKHYSKPNVVPVEVLPIFPDFTNWKYPCAQVIFDSDPAPQG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT TL+KR+ D ++ Y D++EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEPTLEKRRNDFVAGELYKDDEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR K+G PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRPDGIYYNELETRVRLNKRRVKLGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPL+A E R+QR RER LE P
Sbjct: 352 RPLDAIEHRMQRYRERQLEVP 372
>gi|198454011|ref|XP_001359430.2| GA15378 [Drosophila pseudoobscura pseudoobscura]
gi|198132611|gb|EAL28576.2| GA15378 [Drosophila pseudoobscura pseudoobscura]
Length = 559
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 250/378 (66%), Positives = 307/378 (81%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI + + ++KR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSVVNSTADKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
L P DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LAPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF D+K I KHYSKPNV PVE++PV+PDF WKYPCAQVIFDSDPAPVG
Sbjct: 172 RDAQIKAIEKTFLDTKTDITKHYSKPNVVPVEVLPVFPDFINWKYPCAQVIFDSDPAPVG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +P+Q+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y +E EYEYK+
Sbjct: 232 KNVPSQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRADFIAGELYNEEAEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVHH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL A E R+QR RER L
Sbjct: 352 RPLEAVEHRMQRYRERQL 369
>gi|195152704|ref|XP_002017276.1| GL21617 [Drosophila persimilis]
gi|194112333|gb|EDW34376.1| GL21617 [Drosophila persimilis]
Length = 559
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 250/378 (66%), Positives = 307/378 (81%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI + + ++KR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSVVNSTADKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
L P DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LAPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF D+K I KHYSKPNV PVE++PV+PDF WKYPCAQVIFDSDPAPVG
Sbjct: 172 RDAQIKAIEKTFLDTKTDITKHYSKPNVVPVEVLPVFPDFINWKYPCAQVIFDSDPAPVG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +P+Q+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y +E EYEYK+
Sbjct: 232 KNVPSQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRADFIAGELYNEEAEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVHH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL A E R+QR RER L
Sbjct: 352 RPLEAVEHRMQRYRERQL 369
>gi|170054859|ref|XP_001863321.1| antimeros [Culex quinquefasciatus]
gi|167875008|gb|EDS38391.1| antimeros [Culex quinquefasciatus]
Length = 548
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/426 (69%), Positives = 349/426 (81%), Gaps = 11/426 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQ S ++KR + RP E+RSEL+ RVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQNGSNA--ADKRAVA--------RPQEKRSELITRVKYCNTLPDIPFDLKFITYP 50
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE+ RFI+YK TSLERNY+YEVLTEHDLGVTIDLIN+D Y ++ LDPADEKLLEEDI
Sbjct: 51 FENDRFIQYKPTSLERNYRYEVLTEHDLGVTIDLINRDLYQIDHLAVLDPADEKLLEEDI 110
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
TPQDS RS HA+SVSWLR++EYISTEQTRFQPQ M+KVEAKVGF++K++ +E+ LYMD
Sbjct: 111 HTPQDSMRSSRHAKSVSWLRKSEYISTEQTRFQPQTMEKVEAKVGFNVKQSLREETLYMD 170
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R++QVKAI+KTF D+K I HYSKP V PVE++PV+PDF WKYPCAQVIFD DPAP+G
Sbjct: 171 REAQVKAIDKTFEDNKKEITAHYSKPGVVPVEVLPVFPDFVNWKYPCAQVIFDFDPAPIG 230
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQIEEMSQAMIRGVMDESGEQFVAYFLPT ETL+KR+ D ++ Y DE+EYEYKM
Sbjct: 231 KNVPAQIEEMSQAMIRGVMDESGEQFVAYFLPTEETLEKRRRDLVNETLYEDEEEYEYKM 290
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENY+L++R D +YYNELETRVRLSKRRQKVG PNNT+LVV H
Sbjct: 291 AREYNWNVKSKASKGYEENYYLVLRQDGMYYNELETRVRLSKRRQKVGQPPNNTKLVVKH 350
Query: 361 RPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG 420
RPLNA E R+QR RER LEPP EE+EE+ E+EE EE+EE +Q + E++ EGE G+REG
Sbjct: 351 RPLNAPEHRMQRYRERQLEPPGEEDEEDIEDEEPEESEEEEQEQLPESQEPEGE-GKREG 409
Query: 421 GGEGEN 426
GE+
Sbjct: 410 DDNGED 415
>gi|347965688|ref|XP_321844.5| AGAP001302-PA [Anopheles gambiae str. PEST]
gi|333470395|gb|EAA01198.5| AGAP001302-PA [Anopheles gambiae str. PEST]
Length = 565
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/380 (71%), Positives = 315/380 (82%), Gaps = 11/380 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPT+Q + G ++KR P R ERRSEL+ RVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTVQNGANG--ADKR---------PVRQQERRSELISRVKYCNTLPDIPFDLKFITYP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE+ RFI+Y TSLERNY+YEVLTEHDLGVTIDLIN+D Y +++ QLDPADEKLLEEDI
Sbjct: 50 FENDRFIQYNPTSLERNYRYEVLTEHDLGVTIDLINRDLYQIDHSAQLDPADEKLLEEDI 109
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
TPQDS RS HA+SVSWLR++EYISTEQTRF PQ M+KVEAKVGF++KK+ +E+ LYMD
Sbjct: 110 HTPQDSMRSSRHAKSVSWLRKSEYISTEQTRFNPQTMEKVEAKVGFNVKKSLREETLYMD 169
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R++Q+KAIEKTF D+ PI HYSKP VTPVEIMPV+PDF WKYPCAQVIFDSDPAP G
Sbjct: 170 REAQIKAIEKTFEDNTKPITTHYSKPGVTPVEIMPVFPDFANWKYPCAQVIFDSDPAPSG 229
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQIEEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYKM
Sbjct: 230 KNVPAQIEEMSQAMIRGVMDESGEQFVAYFLPTDDTLEKRRRDLVNETLYEDEEEYEYKM 289
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVKSK+ KGYEENY+L++R D +YYNELETRVRLSKRRQK +NT+LVV H
Sbjct: 290 AREYNWNVKSKASKGYEENYYLVLRPDGIYYNELETRVRLSKRRQKNAQQQSNTKLVVKH 349
Query: 361 RPLNATEFRIQRLRERFLEP 380
RPLNA+E R+QR RER LEP
Sbjct: 350 RPLNASEHRMQRYRERQLEP 369
>gi|357627369|gb|EHJ77088.1| hypothetical protein KGM_06557 [Danaus plexippus]
Length = 587
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/381 (72%), Positives = 307/381 (80%), Gaps = 12/381 (3%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PT+QT EKR P R ERRSELV RVKY NTLPDIPFD KF+ YP
Sbjct: 1 MPPTVQTNEPE--REKR---------PQRTGERRSELVTRVKYCNTLPDIPFDLKFLTYP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F STRFI+Y TSLE+NY+YEVLTEHDLGV IDLIN+D Y + N QLDPADEKLLE+D+
Sbjct: 50 FSSTRFIQYNPTSLEKNYRYEVLTEHDLGVHIDLINRDIYQGDGNAQLDPADEKLLEDDV 109
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHHA+SVSWLRR+EYISTEQTRFQPQ M+KVEAKVG+++KK F E+ LYMD
Sbjct: 110 LTPQDSKRSRHHAKSVSWLRRSEYISTEQTRFQPQSMEKVEAKVGYNVKKIFSEETLYMD 169
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+KAIEKTF D+K IEKHYSKP VTPVEIMPV+PDF+ WKYPCAQVIFDSDPAP
Sbjct: 170 RDSQIKAIEKTFEDNKKTIEKHYSKPGVTPVEIMPVFPDFEMWKYPCAQVIFDSDPAPAD 229
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ I QIE MSQAMIRGVMDESGEQFVAY LPT +T+ KR+ D + Y D YEYKM
Sbjct: 230 KNIAGQIEAMSQAMIRGVMDESGEQFVAYCLPTEDTIQKRRRDITEGIPYMDGDTYEYKM 289
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNN-TRLVVT 359
AREYNWNVKSK+ KGYEENYFL+VR+ +YYNELETRVRLSKRR + GAA TRLVVT
Sbjct: 290 AREYNWNVKSKASKGYEENYFLVVRNHCIYYNELETRVRLSKRRARAGAAAQALTRLVVT 349
Query: 360 HRPLNATEFRIQRLRERFLEP 380
HRPLNA E RI RLRE+ LEP
Sbjct: 350 HRPLNAAEHRILRLREKQLEP 370
>gi|195454001|ref|XP_002074040.1| GK12821 [Drosophila willistoni]
gi|194170125|gb|EDW85026.1| GK12821 [Drosophila willistoni]
Length = 543
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 249/381 (65%), Positives = 311/381 (81%), Gaps = 13/381 (3%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI +A +KR P R ER+SE++CRVKY N+LPDIPFD KF+ YP
Sbjct: 1 MPPTILNNTA----DKR---------PQRQTERKSEIICRVKYGNSLPDIPFDLKFLQYP 47
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VL+EHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 48 FDSHRFVQYNPTSLERNFKYDVLSEHDLGVTVDLINRELYQADSVSMLDPADEKLLEEET 107
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 108 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 167
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAP+G
Sbjct: 168 RDAQIKAIEKTFVDTKTEITKHYSKPNVVPVEVLPIFPDFTNWKYPCAQVIFDSDPAPMG 227
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ + AQ+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y D++EYE+K+
Sbjct: 228 KNVVAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRTDLVAGELYKDDEEYEFKI 287
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR K+G PNNT+LVV H
Sbjct: 288 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKIGQQPNNTKLVVKH 347
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPL+A E R+QR RER LE P
Sbjct: 348 RPLDAMEHRMQRYRERQLEVP 368
>gi|312374080|gb|EFR21724.1| hypothetical protein AND_16488 [Anopheles darlingi]
Length = 788
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 280/401 (69%), Positives = 332/401 (82%), Gaps = 5/401 (1%)
Query: 19 PSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNY 78
PS S P P+ RRSEL+ RVKY NTLPDIPFD KFI YPFE+ RFI+Y TSLERNY
Sbjct: 31 PSMFSLP----PSTRRSELISRVKYCNTLPDIPFDLKFITYPFENDRFIQYNPTSLERNY 86
Query: 79 KYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSW 138
+YEVLTEHDLGVTIDLIN+D Y ++ QLDPADEKLLEEDI TPQDS RS HA+SVSW
Sbjct: 87 RYEVLTEHDLGVTIDLINRDLYQIDHTAQLDPADEKLLEEDIHTPQDSMRSSRHAKSVSW 146
Query: 139 LRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLP 198
LR++EYISTEQTRF PQ M+KVEAKVGF++KK+ +E+ LYMDR++Q+KAIEKTF D+
Sbjct: 147 LRKSEYISTEQTRFNPQTMEKVEAKVGFNVKKSLREETLYMDREAQIKAIEKTFDDNTKT 206
Query: 199 IEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGV 258
I HYSKP VTPVE++P++PDF WKYPCAQVIFDSDPAP G+ +PAQIEEMSQAMIRGV
Sbjct: 207 ITTHYSKPGVTPVEVLPLFPDFVNWKYPCAQVIFDSDPAPSGKNVPAQIEEMSQAMIRGV 266
Query: 259 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 318
MDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 267 MDESGEQFVAYFLPTEDTLEKRRRDLVNETLYEDEEEYEYKMAREYNWNVKSKASKGYEE 326
Query: 319 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 378
NY+L++R D +YYNELETRVRLSKRRQK +NT+LVV HR LNA+E R+QR RER L
Sbjct: 327 NYYLVLRQDGIYYNELETRVRLSKRRQKNAQQQSNTKLVVKHRSLNASEHRMQRYRERQL 386
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGERE 419
EPP EE++E+ EEEEEEE EE + + TEA + + +GG++E
Sbjct: 387 EPPGEEDDEDIEEEEEEEEEEEESIQQTEATKAD-DGGKQE 426
>gi|194746540|ref|XP_001955738.1| GF18911 [Drosophila ananassae]
gi|190628775|gb|EDV44299.1| GF18911 [Drosophila ananassae]
Length = 548
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/378 (66%), Positives = 312/378 (82%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI +++ + ++KR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSTSNSAADKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RD+Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WKYPCAQVIFDSDPAPVG
Sbjct: 172 RDAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFINWKYPCAQVIFDSDPAPVG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRADFVAGELYKEEEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRPDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL+ E R+QR RER L
Sbjct: 352 RPLDGMEHRMQRYRERQL 369
>gi|21355457|ref|NP_649493.1| antimeros, isoform A [Drosophila melanogaster]
gi|442617435|ref|NP_001262263.1| antimeros, isoform B [Drosophila melanogaster]
gi|7296819|gb|AAF52095.1| antimeros, isoform A [Drosophila melanogaster]
gi|17944277|gb|AAL48032.1| LD37523p [Drosophila melanogaster]
gi|220946232|gb|ACL85659.1| atms-PA [synthetic construct]
gi|220955924|gb|ACL90505.1| atms-PA [synthetic construct]
gi|440217065|gb|AGB95646.1| antimeros, isoform B [Drosophila melanogaster]
Length = 538
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/378 (65%), Positives = 311/378 (82%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVNSAAEKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R++Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WK+PCAQVIFDSDPAP G
Sbjct: 172 REAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL++ E R+QR RER L
Sbjct: 352 RPLDSMEHRMQRYRERQL 369
>gi|195343495|ref|XP_002038333.1| GM10775 [Drosophila sechellia]
gi|195568273|ref|XP_002102142.1| GD19748 [Drosophila simulans]
gi|194133354|gb|EDW54870.1| GM10775 [Drosophila sechellia]
gi|194198069|gb|EDX11645.1| GD19748 [Drosophila simulans]
Length = 538
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/378 (65%), Positives = 311/378 (82%), Gaps = 9/378 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVNSAAEKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R++Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WK+PCAQVIFDSDPAP G
Sbjct: 172 REAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL++ E R+QR RER L
Sbjct: 352 RPLDSMEHRMQRYRERQL 369
>gi|427789477|gb|JAA60190.1| Putative paf1 [Rhipicephalus pulchellus]
Length = 469
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/381 (63%), Positives = 292/381 (76%), Gaps = 17/381 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQ+ S+ +++ +P ERRSELVCRVKY NTLPDIPFD KFI+YP
Sbjct: 1 MAPTIQSGSSSVERDRK-----------KPGERRSELVCRVKYCNTLPDIPFDPKFISYP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE RF+ YK+TSLERNYK+++LTEHDLGVTIDLI+ TY + N L P DEKLLEED
Sbjct: 50 FEPNRFVSYKATSLERNYKHDLLTEHDLGVTIDLIDPKTYEIDPNAVLHPDDEKLLEEDT 109
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHH V WL++TEYI+TE +R+ Q E KVG+++KK FKE++LYMD
Sbjct: 110 LTPQDSKRSRHHNLVVPWLKKTEYIATEFSRYG-QTGVNTETKVGYNVKKLFKEEDLYMD 168
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+ AI KTF +++ PIE HYSKPNV PVE++P++PD WKYP AQV+FDSDPAP+
Sbjct: 169 RESQINAINKTFEEAQKPIEAHYSKPNVKPVEVLPLFPDSDLWKYPFAQVMFDSDPAPI- 227
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
Q+EEMSQAMIRGVMDESGEQFVAYFLPT +T+ KRK D ++Y D+ EYEY+M
Sbjct: 228 ----TQLEEMSQAMIRGVMDESGEQFVAYFLPTEDTIKKRKRDAEEGMDYMDDDEYEYRM 283
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF + RDD VYYNELETRVRL+KRR K G PNN++LVV H
Sbjct: 284 AREYNWNVKNKASKGYEENYFFVFRDDGVYYNELETRVRLTKRRLKPGVQPNNSKLVVRH 343
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLN E + Q+ R LE P
Sbjct: 344 RPLNEMEHKTQQARLTQLEQP 364
>gi|346470299|gb|AEO34994.1| hypothetical protein [Amblyomma maculatum]
Length = 475
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/381 (62%), Positives = 292/381 (76%), Gaps = 17/381 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT ++ +++ +P ERRSELVCRVKY NTLPDIPFD KFI+YP
Sbjct: 1 MAPTIQTGTSAVERDRK-----------KPGERRSELVCRVKYCNTLPDIPFDPKFISYP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE RF+ YK+TSLERNYK+++LTEHDLGVTIDLI+ TY + N L P DEKLLEED
Sbjct: 50 FEPNRFVSYKATSLERNYKHDLLTEHDLGVTIDLIDPKTYEIDPNAVLHPDDEKLLEEDS 109
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTPQDSKRSRHH V WL++TEYI+TE +R+ Q E KVG+++KK FKE++LYMD
Sbjct: 110 LTPQDSKRSRHHNLVVPWLKKTEYIATEFSRYG-QTGVNTETKVGYNVKKLFKEEDLYMD 168
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R+SQ+ AI KTF +++ PIE HYSKPNV VE++P++PD + WKYP AQV+FDSDPAP+
Sbjct: 169 RESQINAINKTFEEAQKPIEAHYSKPNVKAVEVLPLFPDSELWKYPFAQVMFDSDPAPI- 227
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
Q+EEMSQAMIRGVMDESGEQFVAYFLPT +T+ KRK D ++Y DE EYEY+M
Sbjct: 228 ----TQLEEMSQAMIRGVMDESGEQFVAYFLPTEDTIKKRKRDAEEGVDYMDEDEYEYRM 283
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF + R+D VYYNELETRVRL+KRR K G PNN++LVV H
Sbjct: 284 AREYNWNVKNKASKGYEENYFFVFREDGVYYNELETRVRLTKRRLKPGVQPNNSKLVVRH 343
Query: 361 RPLNATEFRIQRLRERFLEPP 381
RPLN E + Q+ R L+ P
Sbjct: 344 RPLNENEHKTQQARLTQLDQP 364
>gi|321456015|gb|EFX67133.1| hypothetical protein DAPPUDRAFT_302221 [Daphnia pulex]
Length = 507
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/351 (68%), Positives = 287/351 (81%), Gaps = 2/351 (0%)
Query: 35 SELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDL 94
++LVCRVKY NTLPDIPFD KFI YPF+S RFI+Y +TSLE++YKYE+L E+DLG+TIDL
Sbjct: 29 TDLVCRVKYCNTLPDIPFDPKFITYPFDSNRFIQYNATSLEKSYKYELLAEYDLGITIDL 88
Query: 95 INKDTYAPNYNIQLDPADEKLLEEDIL-TPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
IN + YA N LDPADE+LLEED PQD++R HA++VSWLRRTEYISTE TRFQ
Sbjct: 89 INPEAYAKEKNAHLDPADERLLEEDTHHAPQDARRKAQHAKNVSWLRRTEYISTEATRFQ 148
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEI 213
P ++KVEAKVG+S+KK KE+N YMD +SQ+KAIEKTFAD+K PI +H +K VT VE+
Sbjct: 149 PMSIEKVEAKVGYSMKKALKEENAYMDHESQIKAIEKTFADAKKPILEHSTKKGVTAVEV 208
Query: 214 MPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPT 273
+PV PDFK WKYPCAQVIFD++PAPV RP Q+EEMSQAMIRGVMDE+GEQFVAYFLPT
Sbjct: 209 LPVIPDFKLWKYPCAQVIFDANPAPVDRPSNIQVEEMSQAMIRGVMDETGEQFVAYFLPT 268
Query: 274 AETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNE 333
+ETL KR D +++Y D EY+YKMAR+Y+WNVKSK+ KGYEENYF++ RDDAVYYNE
Sbjct: 269 SETLTKRARDASQSVDYDDNDEYDYKMARQYHWNVKSKASKGYEENYFIVFRDDAVYYNE 328
Query: 334 LETRVRLSKRRQKVG-AAPNNTRLVVTHRPLNATEFRIQRLRERFLEPPNE 383
LETRVRL+KRR K G A +NTRLV+ HR L + E R+ R RER LEP N+
Sbjct: 329 LETRVRLTKRRPKPGEPATSNTRLVLKHRSLTSREHRMFRQRERQLEPANQ 379
>gi|391347358|ref|XP_003747931.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 2
[Metaseiulus occidentalis]
Length = 525
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/382 (61%), Positives = 293/382 (76%), Gaps = 13/382 (3%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M P++Q S T +R P+P E+RS+L+CRVKY+NTLPDIPFD KF+A+P
Sbjct: 1 MPPSLQGVSPRTAQGRR----------PQP-EKRSDLLCRVKYSNTLPDIPFDPKFLAFP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNY-NIQLDPADEKLLEED 119
F++ RF+ YKSTSLE NYK+++LTEHDLGVTIDLI+ +TYAP ++ L DEKLLEE+
Sbjct: 50 FDNKRFVSYKSTSLETNYKHDLLTEHDLGVTIDLIDPNTYAPPAEDVPLRADDEKLLEEE 109
Query: 120 ILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYM 179
+TP DSKRSR H + W+++TEYI+TE +R+ Q E KVG+++KK E +LYM
Sbjct: 110 PITPADSKRSRLHNMVIPWVKKTEYIATEFSRYG-QTGVNTETKVGYNVKKMLNERSLYM 168
Query: 180 DRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
DRDSQ++AI KTF +++ PI +HYSKPNVTPVE++PVYPDF+ WKYP AQV+FD++PAP+
Sbjct: 169 DRDSQIEAINKTFEEAQKPITQHYSKPNVTPVEVLPVYPDFELWKYPFAQVLFDNEPAPI 228
Query: 240 GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYK 299
+ + A I EMSQAMIRGVMDESGEQFVAYF+PT ETL KR+ D + +EY DE +YEYK
Sbjct: 229 SQNVRAGILEMSQAMIRGVMDESGEQFVAYFMPTEETLRKRQDDAENKVEYQDEVDYEYK 288
Query: 300 MAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVT 359
M REYNWNVK+K+ GYEENYF VRD +YYNELETRVRLSKRR K G APNN++LVV
Sbjct: 289 MTREYNWNVKNKTSSGYEENYFFAVRDGCIYYNELETRVRLSKRRLKPGMAPNNSKLVVK 348
Query: 360 HRPLNATEFRIQRLRERFLEPP 381
HR LN E R Q+LR LEPP
Sbjct: 349 HRVLNENEHRQQQLRLSQLEPP 370
>gi|391347356|ref|XP_003747930.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Metaseiulus occidentalis]
Length = 520
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/382 (61%), Positives = 292/382 (76%), Gaps = 18/382 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M P++Q S T +R P+P E+RS+L+CRVKY+NTLPDIPFD KF+A+P
Sbjct: 1 MPPSLQGVSPRTAQGRR----------PQP-EKRSDLLCRVKYSNTLPDIPFDPKFLAFP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNY-NIQLDPADEKLLEED 119
F++ RF+ YKSTSLE NYK+++LTEHDLGVTIDLI+ +TYAP ++ L DEKLLEE+
Sbjct: 50 FDNKRFVSYKSTSLETNYKHDLLTEHDLGVTIDLIDPNTYAPPAEDVPLRADDEKLLEEE 109
Query: 120 ILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYM 179
+TP DSKRSR H + W+++TEYI+TE +R+ Q E KVG+++KK E +LYM
Sbjct: 110 PITPADSKRSRLHNMVIPWVKKTEYIATEFSRYG-QTGVNTETKVGYNVKKMLNERSLYM 168
Query: 180 DRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
DRDSQ++AI KTF +++ PI +HYSKPNVTPVE++PVYPDF+ WKYP AQV+FD++PAP+
Sbjct: 169 DRDSQIEAINKTFEEAQKPITQHYSKPNVTPVEVLPVYPDFELWKYPFAQVLFDNEPAPI 228
Query: 240 GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYK 299
+Q EEMSQAMIRGVMDESGEQFVAYF+PT ETL KR+ D + +EY DE +YEYK
Sbjct: 229 -----SQAEEMSQAMIRGVMDESGEQFVAYFMPTEETLRKRQDDAENKVEYQDEVDYEYK 283
Query: 300 MAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVT 359
M REYNWNVK+K+ GYEENYF VRD +YYNELETRVRLSKRR K G APNN++LVV
Sbjct: 284 MTREYNWNVKNKTSSGYEENYFFAVRDGCIYYNELETRVRLSKRRLKPGMAPNNSKLVVK 343
Query: 360 HRPLNATEFRIQRLRERFLEPP 381
HR LN E R Q+LR LEPP
Sbjct: 344 HRVLNENEHRQQQLRLSQLEPP 365
>gi|405965042|gb|EKC30470.1| RNA polymerase II-associated factor 1-like protein [Crassostrea
gigas]
Length = 479
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/350 (65%), Positives = 269/350 (76%), Gaps = 1/350 (0%)
Query: 29 RPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDL 88
RP ERRSELVCRVKYNNTLPDIPFD KFI YPFE+ RF+EYK TSLER+YKY++LTEHDL
Sbjct: 17 RPGERRSELVCRVKYNNTLPDIPFDPKFITYPFETNRFVEYKPTSLERSYKYDLLTEHDL 76
Query: 89 GVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTE 148
GVTIDLIN DTY LDP DE+LLEED+ TP DSKRSR H +VSWLR+TEYISTE
Sbjct: 77 GVTIDLINPDTYRIEPGAYLDPEDERLLEEDLNTPTDSKRSRQHNTTVSWLRKTEYISTE 136
Query: 149 QTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNV 208
RF Q D E KVGF IK+ K++++Y DR SQ++AI+KTF +K I KHYSKP V
Sbjct: 137 YNRFT-QKSDNSERKVGFKIKQIMKDEDIYKDRASQIQAIDKTFEQAKEKITKHYSKPGV 195
Query: 209 TPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVA 268
TPVE++PV+PDF WK+P AQVIFDSDPAP GRP PAQ+EEMSQAMIRG +DE+ EQFVA
Sbjct: 196 TPVEVLPVFPDFDLWKHPFAQVIFDSDPAPKGRPQPAQMEEMSQAMIRGAVDENNEQFVA 255
Query: 269 YFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDA 328
YFLPT ETL KRK D ++Y E EY+Y +AREYNWNVK+K +GYEE YF + R+D
Sbjct: 256 YFLPTEETLTKRKRDSEEGVDYNAEDEYDYTLAREYNWNVKNKLSRGYEETYFFVFREDG 315
Query: 329 VYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 378
++YNELETRVRLSKRR+ GA +RL+V HR +N E Q R L
Sbjct: 316 MFYNELETRVRLSKRRKTGGAQMAKSRLIVKHREVNEREVAAQNARLMML 365
>gi|443724677|gb|ELU12581.1| hypothetical protein CAPTEDRAFT_117955 [Capitella teleta]
Length = 443
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/343 (68%), Positives = 275/343 (80%), Gaps = 6/343 (1%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RSELVCRVKYNN+LPDIPFD KF+ YPFE+ RF++Y TSLER+YK+E+LTE+DLGV ID
Sbjct: 4 RSELVCRVKYNNSLPDIPFDPKFLIYPFEANRFVQYNPTSLERSYKHELLTENDLGVQID 63
Query: 94 LINKDTYA--PNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTR 151
LIN D Y PN LD ADE+LLEED+ TPQDSKRSRHH R+VSWLR+TEYISTE R
Sbjct: 64 LINPDAYKIDPNGKKYLDEADERLLEEDLSTPQDSKRSRHHNRNVSWLRKTEYISTEYNR 123
Query: 152 FQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPV 211
F Q+ DK EAK+GFSIKK FKE++LY DRDSQ+KAIE TF K+PIEKHYSKPNV PV
Sbjct: 124 FT-QLADKAEAKIGFSIKKYFKEEDLYKDRDSQIKAIENTFDAVKIPIEKHYSKPNVYPV 182
Query: 212 EIMPVYPDFKYWKYPCAQVIFDSDPA-PVGRPI-PAQIEEMSQAMIRGVMDESGEQFVAY 269
+++PV PDF WK+PCAQVIFDSDPA G P Q EEMSQAMIRG++DESG+QFVAY
Sbjct: 183 DVLPVLPDFDLWKHPCAQVIFDSDPARHTGTAANPLQNEEMSQAMIRGMVDESGDQFVAY 242
Query: 270 FLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAV 329
FLPT ET+ KRK D + L+Y +E EY+Y +AREYNWNVK+K+ KGYEE YF V++D V
Sbjct: 243 FLPTEETIKKRKRDADNTLDYQEEDEYDYTLAREYNWNVKNKASKGYEETYFFTVKEDGV 302
Query: 330 YYNELETRVRLSKRRQKVGAAPN-NTRLVVTHRPLNATEFRIQ 371
+YNELETRVRLSKRR+ P+ +RLVV HRPLNA E + Q
Sbjct: 303 FYNELETRVRLSKRRKAGQTGPSAKSRLVVKHRPLNAVELQAQ 345
>gi|348505228|ref|XP_003440163.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Oreochromis niloticus]
Length = 535
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/460 (55%), Positives = 313/460 (68%), Gaps = 27/460 (5%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT S + PS+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQSQREDGHR--PSSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + NI LDPADEKLLEEDI
Sbjct: 53 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRIDPNILLDPADEKLLEEDI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE++PV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFEDAQKSITQHYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA +E MSQAMIRG+MDE G QFVAYFLP ETL KRK D ++Y + Y+YK+
Sbjct: 232 MSGPAAVEMMSQAMIRGMMDEEGNQFVAYFLPNEETLRKRKRDCEEGIDYMPDDLYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR K GA + N LV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVC 351
Query: 359 THRPLNATEFRIQRLRERFL---EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEG 415
HR +N E Q R+ L EP +EEE+ + ++E ++ +E ++G +EAE
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEDEEEDMDMDKETQDSGDEKEKGSGSEAEN----- 406
Query: 416 GEREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKS 455
G E E D+E D E ++ R + R K+
Sbjct: 407 ----SGSESERDDE----DQEQRGEDDDEDEDRGKRRRKA 438
>gi|432889892|ref|XP_004075383.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Oryzias
latipes]
Length = 534
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/376 (62%), Positives = 273/376 (72%), Gaps = 10/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R PS+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQRDDGHSR-PSSHRT-VP-----ERSGIVCRVKYCNTLPDIPFDPKFITYP 53
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + I LDPADEKLLEEDI
Sbjct: 54 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRIDPTILLDPADEKLLEEDI 113
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 114 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 172
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVEI+PV+PDFK W PCAQVIFDSDPAP
Sbjct: 173 RDSQISAIEKTFEDAQKSIAQHYSKPRVTPVEILPVFPDFKMWINPCAQVIFDSDPAPKD 232
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA +E MSQAMIRG+MDE G QFVAYFLP ETL KRK D +EY + Y+YK+
Sbjct: 233 ISAPAGVEMMSQAMIRGMMDEEGNQFVAYFLPHEETLRKRKRDSEEGVEYMADDVYDYKI 292
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR K GA + N LV
Sbjct: 293 AREYNWNVKNKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVC 352
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 353 KHRDMNEKELEAQEAR 368
>gi|241825632|ref|XP_002416619.1| conserved hypothetical protein [Ixodes scapularis]
gi|215511083|gb|EEC20536.1| conserved hypothetical protein [Ixodes scapularis]
Length = 431
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/345 (65%), Positives = 267/345 (77%), Gaps = 13/345 (3%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RSELVCRVKY NTLPDIPFD KFIAYPFE RF+ YK+TSLERNYK+++LTEHDLGVTID
Sbjct: 1 RSELVCRVKYCNTLPDIPFDPKFIAYPFEPNRFVSYKATSLERNYKHDLLTEHDLGVTID 60
Query: 94 LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
LI+ TY + N L P DEKLLEED TPQDSKRSRHH V WL++TEYI+TE R+
Sbjct: 61 LIDPKTYEIDANAVLHPDDEKLLEEDAHTPQDSKRSRHHNLVVPWLKKTEYIATEFNRYG 120
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEK-------HYSKP 206
Q E KVG+++KK FKE++LYMDR+SQ+ AI KTF +++ HYSKP
Sbjct: 121 -QSGVNTETKVGYNVKKLFKEEDLYMDRESQISAINKTFEEAQKQASCFHSFQTCHYSKP 179
Query: 207 NVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQF 266
NV PVE++P++PD + WKYP AQV+FDSDPAP+ Q+EEMSQAMIRGVMDESGEQF
Sbjct: 180 NVRPVEVLPLFPDSELWKYPFAQVMFDSDPAPI-----TQLEEMSQAMIRGVMDESGEQF 234
Query: 267 VAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD 326
VAYFLPT +T+ KRK D +EY DE EYEY+MAREYNWNVK+K+ KGYEENYF + R+
Sbjct: 235 VAYFLPTEDTIRKRKRDAEEKVEYMDEDEYEYRMAREYNWNVKNKASKGYEENYFFVFRE 294
Query: 327 DAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQ 371
D V+YNELETRVRLSKRR K G PNN++LVV HRPLN E + Q
Sbjct: 295 DGVFYNELETRVRLSKRRLKPGVQPNNSKLVVRHRPLNEVEHKTQ 339
>gi|223648724|gb|ACN11120.1| RNA polymerase II-associated factor 1 homolog [Salmo salar]
Length = 536
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/376 (61%), Positives = 274/376 (72%), Gaps = 10/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQ T A SE S+H T VP RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQ-TQAQRDSEGHRSSSHRT-VP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 53
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + +I LDPADEKLLEEDI
Sbjct: 54 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRVDPSILLDPADEKLLEEDI 113
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 114 TAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 172
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ PI +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 173 RDSQIAAIEKTFEDAQKPIAQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 232
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
P +E MSQAMIRG+MDE G QFVAYFLP ET+ KRK D L+Y + Y+YK+
Sbjct: 233 MSAPQGVEMMSQAMIRGMMDEEGNQFVAYFLPNEETIRKRKRDVDEELDYMPDDLYDYKI 292
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR K GA + N LV
Sbjct: 293 AREYNWNVKNKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVC 352
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 353 KHRDMNDKELEAQDAR 368
>gi|213512601|ref|NP_001133500.1| RNA polymerase II-associated factor 1 homolog [Salmo salar]
gi|209154248|gb|ACI33356.1| RNA polymerase II-associated factor 1 homolog [Salmo salar]
Length = 532
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/376 (60%), Positives = 271/376 (72%), Gaps = 10/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R+ S + P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQRDSDGHRSSSHRTVP-------ERSGVVCRVKYCNSLPDIPFDPKFITYP 53
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + +I LDPADEKLLEEDI
Sbjct: 54 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRVDPSILLDPADEKLLEEDI 113
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 114 TAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 172
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ PI +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 173 RDSQIAAIEKTFEDAQKPIAQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 232
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
P +E MSQAMIRG+MDE G QFVAYFLP ET+ KRK D L+Y + Y+YK+
Sbjct: 233 MSAPQGVEMMSQAMIRGMMDEEGNQFVAYFLPNEETIRKRKRDVDEELDYMPDDLYDYKI 292
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR K GA + N LV
Sbjct: 293 AREYNWNVKNKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVC 352
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 353 KHRDMNDKELEAQDAR 368
>gi|397482135|ref|XP_003812288.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pan
paniscus]
Length = 533
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 304/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H TP RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRTP------PERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E+ER+EG E ++ G GE E
Sbjct: 412 EHSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|145587688|ref|NP_001019624.1| RNA polymerase II-associated factor 1 homolog [Danio rerio]
gi|82277925|sp|Q4U0S5.1|PAF1_DANRE RecName: Full=RNA polymerase II-associated factor 1 homolog;
AltName: Full=PD2-like protein
gi|66277459|gb|AAY44602.1| PD2-like protein [Danio rerio]
gi|141795323|gb|AAI39614.1| Paf1l protein [Danio rerio]
Length = 503
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/381 (60%), Positives = 277/381 (72%), Gaps = 11/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S H T VP RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SAHRT-VP-----ERSGVVCRVKYGNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + NI LDPADEKLLEE+I
Sbjct: 53 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRIDPNILLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE++PV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQIAAIEKTFEDAQKSISQHYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK D L+Y E+ YEYK+
Sbjct: 232 VSAPAGVDMMSQAMIRGMMDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR KVGA + N LV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSSTNAVLVC 351
Query: 359 THRPLNATEFRIQRLRERFLE 379
HR +N E Q R+ LE
Sbjct: 352 KHRDMNEKELEAQEARKAQLE 372
>gi|149722114|ref|XP_001498010.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Equus
caballus]
Length = 524
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/449 (54%), Positives = 306/449 (68%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+D E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKDSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|197099574|ref|NP_001125634.1| RNA polymerase II-associated factor 1 homolog [Pongo abelii]
gi|75041948|sp|Q5RAX0.1|PAF1_PONAB RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|55728701|emb|CAH91090.1| hypothetical protein [Pongo abelii]
Length = 533
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 306/449 (68%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|343960825|dbj|BAK62002.1| hypothetical protein [Pan troglodytes]
gi|410208516|gb|JAA01477.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
gi|410248688|gb|JAA12311.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
gi|410292268|gb|JAA24734.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
gi|410342695|gb|JAA40294.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
Length = 533
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E+ER+EG E ++ G GE E
Sbjct: 412 EHSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|332242502|ref|XP_003270424.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nomascus
leucogenys]
Length = 535
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 306/449 (68%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|403305255|ref|XP_003943183.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Saimiri
boliviensis boliviensis]
Length = 529
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 306/449 (68%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|291389992|ref|XP_002711498.1| PREDICTED: Paf1, RNA polymerase II associated factor, homolog
[Oryctolagus cuniculus]
Length = 527
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEASED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDREEASDKSGSGEDE 438
>gi|432090694|gb|ELK24034.1| RNA polymerase II-associated factor 1 like protein [Myotis davidii]
Length = 522
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/457 (53%), Positives = 305/457 (66%), Gaps = 45/457 (9%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+D E+E +E+
Sbjct: 342 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKDSSSEKEGSED 401
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGENDNEKRTS 433
+ G +E+ER+EG E ++ G GE +++E R +
Sbjct: 402 ERSG--SESEREEGDRDEASDKSGSGEESSEDEARAA 436
>gi|390478984|ref|XP_002762162.2| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Callithrix jacchus]
Length = 525
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E+ER+EG E ++ G GE E
Sbjct: 412 EHSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|417402499|gb|JAA48096.1| Putative rna polymerase ii regulator [Desmodus rotundus]
Length = 539
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 306/449 (68%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER++G E ++ G GE E
Sbjct: 412 ERSG--SESEREDGDRDEASDKSGSGEDE 438
>gi|301784041|ref|XP_002927430.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Ailuropoda melanoleuca]
Length = 528
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|351706483|gb|EHB09402.1| RNA polymerase II-associated factor 1-like protein [Heterocephalus
glaber]
Length = 535
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGVSDEEHEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|73947660|ref|XP_533675.2| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Canis lupus familiaris]
gi|410983062|ref|XP_003997863.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Felis
catus]
Length = 528
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|126272991|ref|XP_001372133.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Monodelphis domestica]
Length = 527
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 274/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T + RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT------VQERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ ++YT + Y+YK+
Sbjct: 232 TSGSAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETMRKRKRDQEEEMDYTPDDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K GA + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGAQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRNMNEKELEAQEAR 367
>gi|426388666|ref|XP_004060754.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Gorilla gorilla gorilla]
Length = 533
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|431920159|gb|ELK18198.1| RNA polymerase II-associated factor 1 like protein [Pteropus
alecto]
Length = 537
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|31980912|ref|NP_062331.2| RNA polymerase II-associated factor 1 homolog [Mus musculus]
gi|81901032|sp|Q8K2T8.1|PAF1_MOUSE RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|20987627|gb|AAH29843.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Mus musculus]
gi|53733817|gb|AAH83337.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Mus musculus]
gi|74138249|dbj|BAE28608.1| unnamed protein product [Mus musculus]
gi|148692192|gb|EDL24139.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_b [Mus musculus]
Length = 535
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E++R+EG E ++ G GE E
Sbjct: 412 EHSG--SESDREEGDRDEASDKSGSGEDE 438
>gi|410910168|ref|XP_003968562.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Takifugu
rubripes]
Length = 529
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + E P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQR--EEGHRPTSHRT-IP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++L+E DLGVTIDLIN DTY + N+ LDPADEKLLEEDI
Sbjct: 53 FDQHRFVQYKATSLEKQHKHDLLSEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEDI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE++PV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFEDAQKSITQHYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA +E MSQAMIRG+MDE G QFVAYFLP +TL KRK D ++Y E Y+YK+
Sbjct: 232 ISAPAGVEMMSQAMIRGMMDEEGNQFVAYFLPNEDTLRKRKRDFEEGMDYMPEDLYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR K G + N LV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGTQSTTNAVLVC 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|426242871|ref|XP_004015294.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Ovis
aries]
Length = 532
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|355703537|gb|EHH30028.1| hypothetical protein EGK_10597 [Macaca mulatta]
gi|355755821|gb|EHH59568.1| hypothetical protein EGM_09708 [Macaca fascicularis]
gi|380787111|gb|AFE65431.1| RNA polymerase II-associated factor 1 homolog [Macaca mulatta]
gi|383411397|gb|AFH28912.1| RNA polymerase II-associated factor 1 homolog [Macaca mulatta]
gi|384940428|gb|AFI33819.1| RNA polymerase II-associated factor 1 homolog [Macaca mulatta]
Length = 531
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|402905498|ref|XP_003915556.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Papio
anubis]
Length = 530
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|114052767|ref|NP_001039758.1| RNA polymerase II-associated factor 1 homolog [Bos taurus]
gi|122136137|sp|Q2KJ14.1|PAF1_BOVIN RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|86827732|gb|AAI05571.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Bos taurus]
gi|440910331|gb|ELR60139.1| RNA polymerase II-associated factor 1-like protein [Bos grunniens
mutus]
Length = 532
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEP-------------------PNEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGASDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|335302328|ref|XP_003359435.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Sus
scrofa]
Length = 532
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>gi|67846072|ref|NP_001020069.1| RNA polymerase II-associated factor 1 homolog [Rattus norvegicus]
gi|81908653|sp|Q4V886.1|PAF1_RAT RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|66911741|gb|AAH97494.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Rattus norvegicus]
gi|149056464|gb|EDM07895.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Rattus norvegicus]
Length = 535
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEHEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E++R+EG E ++ G GE E
Sbjct: 412 ERSG--SESDREEGDRDEASDKSGSGEDE 438
>gi|395859720|ref|XP_003802180.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Otolemur garnettii]
Length = 533
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E++R+EG E ++ G GE E
Sbjct: 412 ERSG--SESDREEGDRDEASDKSGSGEDE 438
>gi|390369554|ref|XP_785518.3| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Strongylocentrotus purpuratus]
Length = 555
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/376 (61%), Positives = 283/376 (75%), Gaps = 13/376 (3%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTIQ+ G ++ S ST PA RS++VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MPPTIQS---GERKDRERKSRSST----GPA--RSDIVCRVKYANSLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTY-APNYNIQLDPADEKLLEED 119
FE+ RF++Y +TSLERNYK+E+L EHDLGVTIDLIN DTY P +++LDPADEKLLEE+
Sbjct: 52 FEANRFVQYNATSLERNYKHELLAEHDLGVTIDLINPDTYRIPEEHVELDPADEKLLEEE 111
Query: 120 ILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYM 179
I TP DSKRSR H+++VSWLR+TEYIS+E R Q DK+E KVG +KK F E+NLY
Sbjct: 112 IATPGDSKRSRQHSKTVSWLRKTEYISSEYNRSQ-HSKDKIETKVGHHLKKQFTEENLYK 170
Query: 180 DRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
DR +Q+ AI+KTF D+K PIE HYSKP+VTPVEI+PV+PDF+ W +PCAQVIFDSDPA
Sbjct: 171 DRSNQISAIQKTFEDAKKPIETHYSKPHVTPVEILPVFPDFETWIHPCAQVIFDSDPALR 230
Query: 240 GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYK 299
+ Q+EEMSQAMIRG++DES EQFV YFLPT ET KRK D +++Y + +EYEYK
Sbjct: 231 DKSSHQQLEEMSQAMIRGMVDESEEQFVGYFLPTEETCRKRKRDFEEDIDYVEGEEYEYK 290
Query: 300 MAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGAAPNNTRLVV 358
+ REYNWNVK+K+ +GYEENYF + R V+YNELETRVRLSKRR K A +N+ LVV
Sbjct: 291 LTREYNWNVKNKASRGYEENYFFVFRKGKGVFYNELETRVRLSKRRVK-DAPSSNSLLVV 349
Query: 359 THRPLNATEFRIQRLR 374
HR L E +Q +R
Sbjct: 350 KHRELFDQESAMQDMR 365
>gi|348563022|ref|XP_003467307.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Cavia
porcellus]
Length = 535
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKETGGSDEEHEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+E++EG E ++ G GE E
Sbjct: 412 ERSG--SESEQEEGDRDEASDKSGSGEDE 438
>gi|343958600|dbj|BAK63155.1| hypothetical protein [Pan troglodytes]
Length = 523
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/449 (53%), Positives = 298/449 (66%), Gaps = 45/449 (10%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 342 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 401
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E+ER+EG E ++ G GE E
Sbjct: 402 EHSG--SESEREEGDRDEASDKSGSGEDE 428
>gi|55726317|emb|CAH89930.1| hypothetical protein [Pongo abelii]
Length = 534
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/450 (54%), Positives = 306/450 (68%), Gaps = 36/450 (8%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELET-RVRLSKRRQKVGA-APNNTRLV 357
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELET RVRLSKRR K G + N LV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRRVRLSKRRAKAGVQSGTNALLV 351
Query: 358 VTHRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAE 398
V HR +N E Q R+ LE ++EE+E+ E+E +E
Sbjct: 352 VKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSE 411
Query: 399 ETQQGETTEAERQEG---EGGEREGGGEGE 425
+ + G +E+ER+EG E ++ G GE E
Sbjct: 412 DERSG--SESEREEGDRDEASDKSGSGEDE 439
>gi|354483435|ref|XP_003503898.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Cricetulus griseus]
Length = 524
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/433 (54%), Positives = 300/433 (69%), Gaps = 33/433 (7%)
Query: 17 RTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLER 76
+TP++H T +P RS +VCRVKY N+LPDIPFD KFI YPF+ RF++YK+TSLE+
Sbjct: 6 KTPNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEK 59
Query: 77 NYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSV 136
+K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I P SKRS+ HA+ V
Sbjct: 60 QHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVV 119
Query: 137 SWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK 196
W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D++
Sbjct: 120 PWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQ 178
Query: 197 LPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIR 256
I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP A +E MSQAMIR
Sbjct: 179 KSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIR 238
Query: 257 GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGY 316
G+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGY
Sbjct: 239 GMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGY 298
Query: 317 EENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLR 374
EENYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R
Sbjct: 299 EENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEAR 358
Query: 375 ERFLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG-- 413
+ LE ++EE+E+ E+E +E+ + G +E++R+EG
Sbjct: 359 KAQLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESDREEGDR 416
Query: 414 -EGGEREGGGEGE 425
EG ++ G GE E
Sbjct: 417 EEGSDKSGSGEDE 429
>gi|74147922|dbj|BAE22315.1| unnamed protein product [Mus musculus]
Length = 534
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/449 (53%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKR+ K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRQAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E++R+EG E ++ G GE E
Sbjct: 412 EHSG--SESDREEGDRDEASDKSGSGEDE 438
>gi|391347419|ref|XP_003747960.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Metaseiulus occidentalis]
Length = 397
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/382 (58%), Positives = 288/382 (75%), Gaps = 18/382 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M P++Q S T +R P+P E+R +L+CRVKY+NTLP IPFD KF+A+P
Sbjct: 1 MHPSLQGVSRRTAQGRR----------PQP-EKRPDLLCRVKYSNTLPAIPFDPKFLAFP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNY-NIQLDPADEKLLEED 119
F++ RF+ YKSTSLE NYK+++LTEHDLGVTIDLI+ +TYAP ++ L +E+LLEE+
Sbjct: 50 FDNKRFLSYKSTSLETNYKHDLLTEHDLGVTIDLIDPNTYAPPAEDVPLHADNEELLEEE 109
Query: 120 ILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYM 179
+TP SKRSR H + W+++TEYI+TE +R+ Q E KVG+++KK E +LYM
Sbjct: 110 PITPAVSKRSRLHNMVIPWVKKTEYIATEFSRYG-QTGVNTETKVGYNVKKMLNERSLYM 168
Query: 180 DRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
DRDSQ++AI KTF +++ PI +HY+KPNVTPVE++PVYPDF+ WKYP AQV+F+++PAP+
Sbjct: 169 DRDSQIEAINKTFEEAQKPITQHYAKPNVTPVEVLPVYPDFELWKYPFAQVLFENEPAPI 228
Query: 240 GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYK 299
+Q EEMSQAMIRGVMDESGEQFVAYF+PT ETL KR+ D + +EY DE +YEY+
Sbjct: 229 -----SQAEEMSQAMIRGVMDESGEQFVAYFMPTEETLRKRQNDAENKVEYQDEVDYEYE 283
Query: 300 MAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVT 359
M REYNWNVK+K+ GY+ENYF VRD +YYNELETRVRLSKRR + G APNN+ LVV
Sbjct: 284 MTREYNWNVKNKTSSGYDENYFFAVRDGCIYYNELETRVRLSKRRLEPGMAPNNSELVVK 343
Query: 360 HRPLNATEFRIQRLRERFLEPP 381
HR LN E R Q+LR LEPP
Sbjct: 344 HRVLNENEHRQQQLRLSQLEPP 365
>gi|90084485|dbj|BAE91084.1| unnamed protein product [Macaca fascicularis]
Length = 531
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 272/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+T LE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATFLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|7670494|dbj|BAA95098.1| unnamed protein product [Mus musculus]
Length = 535
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/449 (53%), Positives = 304/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSD AP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDLAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E++R+EG E ++ G GE E
Sbjct: 412 EHSG--SESDREEGDRDEASDKSGSGEDE 438
>gi|45361543|ref|NP_989348.1| RNA polymerase II-associated factor 1 homolog [Xenopus (Silurana)
tropicalis]
gi|82186238|sp|Q6P2Y1.1|PAF1_XENTR RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|39850160|gb|AAH64253.1| Paf1, RNA polymerase II associated factor, homolog [Xenopus
(Silurana) tropicalis]
Length = 520
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/424 (57%), Positives = 297/424 (70%), Gaps = 18/424 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDIADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ PI +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFEDAQKPISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGSAALDMMSQAMIRGMMDEEGNQFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR ++ E Q R LE EEEEE E ++E + + + GE +G G E+
Sbjct: 352 KHRDMHEKELEAQEARRAQLENHEPEEEEEIEVDQETQGSDAEDGE-------KGSGSEK 404
Query: 419 EGGG 422
EG G
Sbjct: 405 EGSG 408
>gi|291236098|ref|XP_002737978.1| PREDICTED: antimeros-like [Saccoglossus kowalevskii]
Length = 533
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 271/380 (71%), Gaps = 34/380 (8%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RS+LVCRVKY N LPDIPFD KFI YPFE RF++Y +TSLER+YK+E+LTEHDLGVTID
Sbjct: 24 RSDLVCRVKYCNHLPDIPFDPKFITYPFEPNRFVQYNATSLERSYKHELLTEHDLGVTID 83
Query: 94 LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
LIN DTY+ + ++ +DPADE+LLEE+I TP DSKRSR HA+ VSWLR+TEYISTE RF
Sbjct: 84 LINPDTYSQDPSVIIDPADERLLEEEISTPGDSKRSRQHAKPVSWLRKTEYISTEYNRFT 143
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEI 213
DK E KVG +++K F ED LY DR+SQ+ AI+KTF +K+PI +HYSKPNVT V++
Sbjct: 144 -HSSDKAETKVGANLRKQFAEDYLYKDRESQISAIDKTFDTAKVPITEHYSKPNVTAVDV 202
Query: 214 MPVYPDFK----------------------------YW-----KYPCAQVIFDSDPAPVG 240
+PV+PDF Y+ +PCAQVIFDSDP+ G
Sbjct: 203 LPVFPDFNVSFTFIDRMFTDKRICHAVGDVSHPKSVYYLPVAMDHPCAQVIFDSDPSVSG 262
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ + Q+EEMSQAMIRG++DES EQFV YFLP ET KRK D ++YT E+EYEYKM
Sbjct: 263 KQMALQMEEMSQAMIRGMVDESDEQFVGYFLPNEETRQKRKRDVEEGIDYTPEEEYEYKM 322
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF +VRDD VYYNELETRVRLSKRR K +N+ L+V H
Sbjct: 323 AREYNWNVKNKATKGYEENYFFVVRDDGVYYNELETRVRLSKRRVKGPVVSSNSVLIVKH 382
Query: 361 RPLNATEFRIQRLRERFLEP 380
R L E Q R LEP
Sbjct: 383 RELTEGESSQQEARLLQLEP 402
>gi|344298406|ref|XP_003420884.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Loxodonta
africana]
Length = 499
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|42476169|ref|NP_061961.2| RNA polymerase II-associated factor 1 homolog isoform 1 [Homo
sapiens]
gi|182670295|sp|Q8N7H5.2|PAF1_HUMAN RecName: Full=RNA polymerase II-associated factor 1 homolog;
Short=hPAF1; AltName: Full=Pancreatic differentiation
protein 2
gi|12054502|emb|CAC20564.1| PD2 protein [Homo sapiens]
gi|12652555|gb|AAH00017.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Homo sapiens]
gi|15426567|gb|AAH13402.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Homo sapiens]
gi|119577284|gb|EAW56880.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119577286|gb|EAW56882.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123981872|gb|ABM82765.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[synthetic construct]
gi|123996701|gb|ABM85952.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[synthetic construct]
Length = 531
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/446 (55%), Positives = 305/446 (68%), Gaps = 28/446 (6%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR +N E Q R+ LE E +EEEEEE E ++ ++ E+++G E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLE-----NHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEK 406
Query: 419 EGGGEGENDNEKRTSDAEHSSKNSSR 444
EG S+ EHS S R
Sbjct: 407 EG------------SEDEHSGSESER 420
>gi|281344083|gb|EFB19667.1| hypothetical protein PANDA_017209 [Ailuropoda melanoleuca]
Length = 513
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/431 (54%), Positives = 296/431 (68%), Gaps = 33/431 (7%)
Query: 19 PSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNY 78
P++H T +P RS +VCRVKY N+LPDIPFD KFI YPF+ RF++YK+TSLE+ +
Sbjct: 2 PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQH 55
Query: 79 KYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSW 138
K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I P SKRS+ HA+ V W
Sbjct: 56 KHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPW 115
Query: 139 LRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLP 198
+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D++
Sbjct: 116 MRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKS 174
Query: 199 IEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGV 258
I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP A +E MSQAMIRG+
Sbjct: 175 ISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGM 234
Query: 259 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 318
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 235 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 294
Query: 319 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 376
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 295 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 354
Query: 377 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 414
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 355 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 412
Query: 415 GGEREGGGEGE 425
++ G GE E
Sbjct: 413 ASDKSGSGEDE 423
>gi|147902583|ref|NP_001086458.1| RNA polymerase II-associated factor 1 homolog [Xenopus laevis]
gi|171769536|sp|A2BD83.1|PAF1_XENLA RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|122936408|gb|AAI30058.1| Paf1 protein [Xenopus laevis]
Length = 524
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/422 (56%), Positives = 295/422 (69%), Gaps = 11/422 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDFADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFDDAQKDISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGTAALDMMSQAMIRGMMDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR ++ E Q R LE EEEEE E + + + + ++GE +EG G E+
Sbjct: 352 KHRDMHEKELEAQEARRAQLENHEPEEEEEIEVDRDTQGSDAEEGEKGSGSEKEGSGAEQ 411
Query: 419 EG 420
G
Sbjct: 412 SG 413
>gi|344236939|gb|EGV93042.1| RNA polymerase II-associated factor 1-like [Cricetulus griseus]
Length = 537
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 290/415 (69%), Gaps = 27/415 (6%)
Query: 35 SELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDL 94
S +VCRVKY N+LPDIPFD KFI YPF+ RF++YK+TSLE+ +K+++LTE DLGVTIDL
Sbjct: 31 SGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDL 90
Query: 95 INKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQP 154
IN DTY + N+ LDPADEKLLEE+I P SKRS+ HA+ V W+R+TEYISTE R+
Sbjct: 91 INPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGI 150
Query: 155 QVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIM 214
+K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP VTPVE+M
Sbjct: 151 S-NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVM 209
Query: 215 PVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTA 274
PV+PDFK W PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP
Sbjct: 210 PVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVE 269
Query: 275 ETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNE 333
ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNE
Sbjct: 270 ETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNE 329
Query: 334 LETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRERFLEPP----------- 381
LETRVRLSKRR K G + N LVV HR +N E Q R+ LE
Sbjct: 330 LETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEME 389
Query: 382 --------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---EGGEREGGGEGE 425
++EE+E+ E+E +E+ + G +E++R+EG EG ++ G GE E
Sbjct: 390 AEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESDREEGDREEGSDKSGSGEDE 442
>gi|444732083|gb|ELW72402.1| RNA polymerase II-associated factor 1 like protein [Tupaia
chinensis]
Length = 523
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 292/435 (67%), Gaps = 42/435 (9%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 342 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEASED 401
Query: 400 TQQGETTEAERQEGE 414
G +E+ER+EG+
Sbjct: 402 EHSG--SESEREEGD 414
>gi|417402890|gb|JAA48275.1| Putative rna polymerase ii regulator [Desmodus rotundus]
Length = 572
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/481 (50%), Positives = 310/481 (64%), Gaps = 66/481 (13%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRF-----QPQVM------------------ 157
P SKRS+ HA+ V W+R+TEYISTE R+ +P+V
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVXXXXXXVVPWMRKTEYIST 172
Query: 158 ---------DKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNV 208
+K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP V
Sbjct: 173 EFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRV 232
Query: 209 TPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVA 268
TPVE+MPV+PDFK W PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVA
Sbjct: 233 TPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVA 292
Query: 269 YFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-D 327
YFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D
Sbjct: 293 YFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGD 352
Query: 328 AVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRERFLEPP----- 381
VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+ LE
Sbjct: 353 GVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEE 412
Query: 382 --------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---EGGEREGGGEG 424
++EE+E+ E+E +E+ + G +E+ER++G E ++ G GE
Sbjct: 413 EEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREDGDRDEASDKSGSGED 470
Query: 425 E 425
E
Sbjct: 471 E 471
>gi|7023594|dbj|BAA92020.1| unnamed protein product [Homo sapiens]
Length = 531
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/446 (54%), Positives = 302/446 (67%), Gaps = 28/446 (6%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ R ++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRIVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPGVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR +N E Q R+ LE E + EEEEE E ++ ++ E+++G E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLE-----NHEPEGEEEEEMETEEKEAGGSDEEQEKGSSSEK 406
Query: 419 EGGGEGENDNEKRTSDAEHSSKNSSR 444
EG S+ EHS S R
Sbjct: 407 EG------------SEDEHSGSESER 420
>gi|12857167|dbj|BAB30913.1| unnamed protein product [Mus musculus]
Length = 377
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/381 (59%), Positives = 276/381 (72%), Gaps = 11/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLE 379
HR +N E Q R+ LE
Sbjct: 352 KHRDMNEKELEAQEARKAQLE 372
>gi|296477828|tpg|DAA19943.1| TPA: RNA polymerase II-associated factor 1 homolog [Bos taurus]
Length = 386
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 273/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRDMNEKELEAQEAR 367
>gi|47227757|emb|CAG08920.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/373 (59%), Positives = 269/373 (72%), Gaps = 10/373 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + HS P R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQT-------QAQREEGHSRPAAHRAIPERSGVVCRVKYCNSLPDIPFDPKFITYP 53
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++L+E DLGVTIDLIN DTY + ++ LDPADEKLLEEDI
Sbjct: 54 FDQHRFVQYKATSLEKQHKHDLLSEPDLGVTIDLINPDTYRIDPSVLLDPADEKLLEEDI 113
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 114 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 172
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE++PV+PDFK W PCAQVIFDSDPAP
Sbjct: 173 RDSQISAIEKTFEDAQKSITQHYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKD 232
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA +E MSQAMIRG+MDE G QFVAYFLP +TL KRK D ++Y E Y+YK+
Sbjct: 233 ISGPAGVEMMSQAMIRGMMDEEGNQFVAYFLPNEDTLRKRKRDFEEGVDYMPEDLYDYKI 292
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR K G + N LV
Sbjct: 293 AREYNWNVKNKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGTQSTTNAVLVC 352
Query: 359 THRPLNATEFRIQ 371
HR +N E Q
Sbjct: 353 KHRDMNEKELEAQ 365
>gi|395501648|ref|XP_003755203.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Sarcophilus harrisii]
Length = 529
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/376 (58%), Positives = 269/376 (71%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T + RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--ASSHRT------VQERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ +RF++YK+TSLE+ +++++LTE DLGVTIDLIN DTY LDPADEKLLEE+I
Sbjct: 53 FDQSRFVQYKATSLEKQHRHDLLTEPDLGVTIDLINPDTYRVEAGAPLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P S+RS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSRRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGSAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETMRKRKRDQEEKMDYAPDDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 352 KHRNMNEKELEAQEAR 367
>gi|395859722|ref|XP_003802181.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 2
[Otolemur garnettii]
Length = 484
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/376 (59%), Positives = 266/376 (70%), Gaps = 21/376 (5%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 342 KHRDMNEKELEAQEAR 357
>gi|21758435|dbj|BAC05305.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/376 (59%), Positives = 266/376 (70%), Gaps = 21/376 (5%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLER +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLERQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 342 KHRDMNEKELEAQEAR 357
>gi|156389561|ref|XP_001635059.1| predicted protein [Nematostella vectensis]
gi|156222149|gb|EDO42996.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/338 (63%), Positives = 256/338 (75%), Gaps = 5/338 (1%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RS+ V R+KYNN LPDIPFD KFI+YPFE RF++YK TSLE+NYK+E+LT+ DLGV ID
Sbjct: 4 RSDFVTRIKYNNNLPDIPFDAKFISYPFEGNRFVQYKPTSLEKNYKHELLTDIDLGVNID 63
Query: 94 LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
LI+ YA + N LDPADEKLLEED + D KR+RHH ++VSWLR+TEYISTE R Q
Sbjct: 64 LIDPQMYAVDPNATLDPADEKLLEEDAVVMPDKKRTRHHNKNVSWLRKTEYISTEYNRAQ 123
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEI 213
+ E KVGFSIKK FK +LY DRDSQ+ AIE TF +K PI H SKPN+TPVE+
Sbjct: 124 TS-NEMAETKVGFSIKKKFKGTDLYKDRDSQLAAIENTFEAAKKPIHHHPSKPNLTPVEV 182
Query: 214 MPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPT 273
+PV+PDF+ W YPCA V+FD+DPAP R PAQ++EMSQAMIRG++D SG+QFVAYFLP
Sbjct: 183 LPVFPDFQMWGYPCAHVVFDTDPAPRDRKGPAQVDEMSQAMIRGMVDASGDQFVAYFLPD 242
Query: 274 AETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYN 332
ETL+KRK D +Y DE+EY YKMAREYNWNVK+KS KGYEENYF + RD + V+YN
Sbjct: 243 KETLNKRKRDHEEMADYQDEEEYVYKMAREYNWNVKNKSTKGYEENYFFVFRDGEGVFYN 302
Query: 333 ELETRVRLSKRRQKVGAAPNN---TRLVVTHRPLNATE 367
EL TRVRLSKRR + G ++LVV HR LN E
Sbjct: 303 ELVTRVRLSKRRARGGVGGVRSAVSKLVVKHRELNDGE 340
>gi|363746155|ref|XP_003643545.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Gallus
gallus]
Length = 617
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/361 (59%), Positives = 263/361 (72%), Gaps = 9/361 (2%)
Query: 16 KRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLE 75
+R P +H T RS +VCRVKY N+LPDIPFD KFI YPF+ RF++YK+TSLE
Sbjct: 114 QRRPGSHRT------LPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLE 167
Query: 76 RNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARS 135
+ +K+++LTE DLGVTIDLIN DTY + ++ LDPADEKLLEE+I P SKRS+ HA+
Sbjct: 168 KQHKHDLLTEPDLGVTIDLINPDTYRIDPSVLLDPADEKLLEEEIQAPTSSKRSQQHAKV 227
Query: 136 VSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADS 195
V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D+
Sbjct: 228 VPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEEIYKDRDSQIAAIEKTFEDA 286
Query: 196 KLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMI 255
+ I +HYSKP VTP+E+MPV+PDFK W PCAQVIFDSDPAP A +E MSQAMI
Sbjct: 287 QKAITQHYSKPRVTPLEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMI 346
Query: 256 RGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKG 315
RG+MDE G QFVAYFLP ETL KRK DQ ++Y E Y+YK+AREYNWNVK+K+ KG
Sbjct: 347 RGMMDEEGNQFVAYFLPVEETLRKRKRDQEEEMDYAPEDVYDYKIAREYNWNVKNKASKG 406
Query: 316 YEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRL 373
YEENYF I R+ D VYYNELETRVRLSKRR + G + N LVV HR +N E Q
Sbjct: 407 YEENYFFIFREGDGVYYNELETRVRLSKRRARAGVQSGTNAVLVVKHRDMNEKELEAQEA 466
Query: 374 R 374
R
Sbjct: 467 R 467
>gi|426388668|ref|XP_004060755.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 2
[Gorilla gorilla gorilla]
Length = 487
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/376 (59%), Positives = 266/376 (70%), Gaps = 21/376 (5%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 342 KHRDMNEKELEAQEAR 357
>gi|378744165|ref|NP_001243755.1| RNA polymerase II-associated factor 1 homolog isoform 2 [Homo
sapiens]
gi|119577287|gb|EAW56883.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_c [Homo sapiens]
Length = 485
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/376 (59%), Positives = 266/376 (70%), Gaps = 21/376 (5%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 221
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 222 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 281
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 282 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 341
Query: 359 THRPLNATEFRIQRLR 374
HR +N E Q R
Sbjct: 342 KHRDMNEKELEAQEAR 357
>gi|51258264|gb|AAH79993.1| Paf1 protein [Xenopus laevis]
Length = 407
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 272/376 (72%), Gaps = 11/376 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDFADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFDDAQKDISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGTAALDMMSQAMIRGMMDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR ++ E Q R
Sbjct: 352 KHRDMHEKELEAQEAR 367
>gi|355709097|gb|AES03478.1| Paf1, RNA polymerase II associated factor,-like protein [Mustela
putorius furo]
Length = 337
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/345 (61%), Positives = 257/345 (74%), Gaps = 10/345 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT------LPERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRR 344
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRR 336
>gi|417399206|gb|JAA46631.1| Putative rna polymerase ii regulator [Desmodus rotundus]
Length = 338
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/338 (60%), Positives = 250/338 (73%), Gaps = 10/338 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQR--EDGHRPNSHRT------LPERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETR 337
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETR
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETR 329
>gi|109124676|ref|XP_001086329.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Macaca
mulatta]
Length = 333
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/338 (60%), Positives = 252/338 (74%), Gaps = 10/338 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQR--EDGHRPNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETR 337
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETR
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETR 329
>gi|322778831|gb|EFZ09247.1| hypothetical protein SINV_08735 [Solenopsis invicta]
Length = 392
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/294 (65%), Positives = 234/294 (79%), Gaps = 10/294 (3%)
Query: 87 DLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYIS 146
++ IDL NK+ + DPA +K LE+D+LTPQ+SKRS+ HAR VSWL E IS
Sbjct: 67 NIPFEIDLRNKNMFVR------DPA-KKFLEKDVLTPQNSKRSQLHARRVSWLSHPEPIS 119
Query: 147 TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKP 206
TE TRFQ D+ + KVG+++KKN KE LYM+R+SQ+KAIEKTF D+K PIE+HY+KP
Sbjct: 120 TESTRFQ--TADRFKTKVGYNMKKNLKE-TLYMNRESQIKAIEKTFEDNKKPIERHYNKP 176
Query: 207 NVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQF 266
NV PVEI+PVYPDFK WKY CA+V+FDS P P G+ IPAQIEEMSQAMIRG+++ESGEQ
Sbjct: 177 NVVPVEILPVYPDFKLWKYSCAEVVFDSAPVPTGQSIPAQIEEMSQAMIRGMVNESGEQL 236
Query: 267 VAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD 326
VAYFLP ETL+KR+ D + ++Y DE+EYEYK+AR+YNWNVKS + KGYEENYFL++R
Sbjct: 237 VAYFLPLEETLEKRRRDFAAGIDYADEEEYEYKLARQYNWNVKSIAFKGYEENYFLVIRQ 296
Query: 327 DAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFLEP 380
D VYYNELETRVRLSKRRQKVG PNN RL+V HRPLNA EFR+Q+ RE L+P
Sbjct: 297 DGVYYNELETRVRLSKRRQKVGQQPNNMRLIVRHRPLNANEFRMQKYRENQLKP 350
>gi|260822425|ref|XP_002606602.1| hypothetical protein BRAFLDRAFT_209622 [Branchiostoma floridae]
gi|229291946|gb|EEN62612.1| hypothetical protein BRAFLDRAFT_209622 [Branchiostoma floridae]
Length = 352
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/331 (59%), Positives = 239/331 (72%), Gaps = 14/331 (4%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RSELVCR KY N LPDIPFD KFI YPFES I + + V E+ I
Sbjct: 15 RSELVCRPKYTNALPDIPFDPKFITYPFESNSSIMFMLS---------VRAEYSCTNMIC 65
Query: 94 LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
L N+ LDP DEKLLEED+ TPQDSKRSRHHA++VSWLRRTEYISTE RF
Sbjct: 66 L-NEARLLSFSTAYLDPLDEKLLEEDMSTPQDSKRSRHHAKNVSWLRRTEYISTEYNRFT 124
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPN-VTPVE 212
P +K E K+G SIKK FKE+++Y DR+SQ+ AIEKTF D K PI HYSK + V P+E
Sbjct: 125 PS-SEKAETKIGHSIKKQFKEEDIYKDRESQIAAIEKTFEDVKTPITHHYSKGDRVQPLE 183
Query: 213 IMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP 272
++ +PDF+ W +PCAQVIFD+DPAP G+ +PA +EEMSQAMIRG++DE G+QFV YFLP
Sbjct: 184 VLEFFPDFENWAFPCAQVIFDTDPAPRGKSVPAAVEEMSQAMIRGMVDEEGDQFVGYFLP 243
Query: 273 TAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYN 332
ET+ KRK ++ S ++Y E+EY+Y MAREYNWNVK+KS +GYEENYF++ +DD VYYN
Sbjct: 244 VEETVTKRKREEESEVDYMPEEEYDYMMAREYNWNVKNKSSRGYEENYFVVFKDDGVYYN 303
Query: 333 ELETRVRLSKRRQKVGAAPN--NTRLVVTHR 361
ELETRVRLSKRR K G +RLVV HR
Sbjct: 304 ELETRVRLSKRRAKGGQGIQSRTSRLVVKHR 334
>gi|221109423|ref|XP_002154497.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Hydra
magnipapillata]
Length = 427
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/367 (53%), Positives = 261/367 (71%), Gaps = 7/367 (1%)
Query: 19 PSTHSTPVPPR-PAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERN 77
P + PV + P + + VC VKY N LPDIPFD KFI+YPFE+ RFIEYK TSLERN
Sbjct: 3 PVIQNAPVSRKDPDKGKEGFVCNVKYTNVLPDIPFDGKFISYPFEANRFIEYKPTSLERN 62
Query: 78 YKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVS 137
YK E+LTE DLGV+IDLIN +TY + N++LDP DEKLLEED + D KR + H ++VS
Sbjct: 63 YKNELLTEPDLGVSIDLINPETYDIDMNVELDPEDEKLLEEDHIPQADQKRHQQHTKTVS 122
Query: 138 WLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKED-NLYMDRDSQVKAIEKTFADSK 196
WLR+TEYISTE RFQ + E KVG+S KK K D +LY DR+SQ++AIE +F +K
Sbjct: 123 WLRKTEYISTEYNRFQTS-SEMAETKVGYSSKKQSKLDIDLYKDRESQIEAIEASFEAAK 181
Query: 197 LPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIR 256
PI H + + PVEI+PV+PDF++W PCA VIFD++P P G+ +PA +E+MS MIR
Sbjct: 182 KPITCHDTNARIKPVEILPVFPDFQFWHMPCAHVIFDTEPTPRGKTVPATVEQMSLGMIR 241
Query: 257 GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGY 316
G+ DESG+QFVAYFLP+ TL K+K + +N + ++EYEYK+AREYNWNVK+K+ KG+
Sbjct: 242 GMEDESGDQFVAYFLPSDLTLKKKKQELDNNEQPNPDEEYEYKLAREYNWNVKNKAIKGF 301
Query: 317 EENYFLIVRD-DAVYYNELETRVRLSK---RRQKVGAAPNNTRLVVTHRPLNATEFRIQR 372
EENYF + R+ + V+YNEL+TRVRL+K R G + + ++L+V +R E R+Q
Sbjct: 302 EENYFFVFRENEGVFYNELQTRVRLNKRRGRGGAGGISSSVSKLIVKNREPTENEVRLQN 361
Query: 373 LRERFLE 379
R LE
Sbjct: 362 ARLVQLE 368
>gi|358333056|dbj|GAA51648.1| RNA polymerase II-associated factor 1 homolog [Clonorchis sinensis]
Length = 850
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/465 (48%), Positives = 299/465 (64%), Gaps = 33/465 (7%)
Query: 29 RPAERRSE-LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHD 87
R E R E L+CR+KY NTLP++PFD KF+AYP E +RF++Y +TSLERNYK+E+LTE D
Sbjct: 329 RAKELRVESLLCRLKYRNTLPELPFDPKFLAYPLEPSRFLQYVATSLERNYKHELLTETD 388
Query: 88 LGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYIST 147
+GV +DLI+ D + + +++L P DE+LLE+D ++++SRH +SVSWLRRTEYIST
Sbjct: 389 VGVDVDLIDPDVFKIDKSVKLHPDDERLLEDDTPAAINARKSRHQ-KSVSWLRRTEYIST 447
Query: 148 EQ-TRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKP 206
E R+ DKVE+K+G+S+K++ E+ +Y DR+SQ+ AIE TF +K PI KHYSKP
Sbjct: 448 EMYNRWNKS--DKVESKLGYSVKRHLNEEIVYRDRESQIAAIEATFRAAKKPITKHYSKP 505
Query: 207 NVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQF 266
NV VE++PV PDF W+YPCAQVIFD DPA + Q EE++QAMIRG++DESG+ F
Sbjct: 506 NVHAVEVLPVLPDFTLWRYPCAQVIFDDDPARKNKSNAEQKEEVNQAMIRGMVDESGDHF 565
Query: 267 VAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD 326
VAYFLPT T R+LD +++ YT+ YEY++AREYNWNVK+K+ YEENYF + R
Sbjct: 566 VAYFLPTESTKQLRRLDIENHVPYTEGAAYEYELAREYNWNVKNKTMANYEENYFFVFRK 625
Query: 327 DAVYYNELETRVRLSKRRQKV-------------GAAPN-NTRLVVTHRPLNATEFRIQR 372
D V+YNELETRVRLSKRR+ GA P TRL+V HR E + Q
Sbjct: 626 DGVFYNELETRVRLSKRRKLTQSGSFMTGGGGGGGALPAPKTRLIVHHRDFTDEELKAQT 685
Query: 373 LRERFLE--------PPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEG 424
R LE +EEEE+ E + +T+ G +E EG E E
Sbjct: 686 DRLYMLEHDVEDEEEEDEDEEEEDGAHRAHERSGDTEHGSPSEG---HSEGCEDELHDPA 742
Query: 425 ENDNEKRTSDA--EHSSKNSSRASSRSR-SRSKSKSPAKRSRSGS 466
+ND ++ +D E S+ S +R S S KS AKRS + S
Sbjct: 743 DNDAQEEDTDEFRETQSEGSEVEEVPARSSHSAKKSMAKRSPTKS 787
>gi|198415605|ref|XP_002124310.1| PREDICTED: similar to RNA polymerase II-associated factor 1 homolog
(hPAF1) (Pancreatic differentiation protein 2) [Ciona
intestinalis]
Length = 328
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/339 (56%), Positives = 248/339 (73%), Gaps = 13/339 (3%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPT+Q +S+ S+ RT + ER S LV RVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTVQNSSSS--SKGRTRGS---------IERGSGLVTRVKYCNTLPDIPFDPKFIRYP 49
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F++ RF++YK TSLE+ +K E+ T+HDLGV IDLIN DTY N N + PADE LLE+D+
Sbjct: 50 FDANRFVDYKPTSLEKQHKTELHTDHDLGVVIDLINPDTYKVNPNTWIHPADEALLEDDL 109
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSI--KKNFKEDNLY 178
PQD+KRS+ H+ +VSWLRR+EYIS E R+ + + + ++ KK FK+D+LY
Sbjct: 110 PAPQDTKRSKQHSLNVSWLRRSEYISQEFNRYGVKSTNVETRYLSYNPVPKKYFKQDDLY 169
Query: 179 MDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP 238
DRD Q+ AI+KTF DSK I KHYSKPNV PV+++P+YPD K W++P AQVIFD+DP+
Sbjct: 170 KDRDGQIAAIQKTFEDSKKEITKHYSKPNVFPVDVLPIYPDMKMWQHPSAQVIFDTDPSV 229
Query: 239 VGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEY 298
G+P Q+EEMSQAMIRG++DE G+QFVAYFLPT T KRK D +++ E+ Y+Y
Sbjct: 230 QGKPAAEQLEEMSQAMIRGMVDEEGDQFVAYFLPTPSTRQKRKRDVEEGVDFEPEETYDY 289
Query: 299 KMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETR 337
++AREYNWNVK+K+ KGYEENY+ I R++ VYYNELETR
Sbjct: 290 RLAREYNWNVKNKASKGYEENYYFIFREEGVYYNELETR 328
>gi|326918213|ref|XP_003205385.1| PREDICTED: RNA polymerase II-associated factor 1 homolog, partial
[Meleagris gallopavo]
Length = 385
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/311 (60%), Positives = 230/311 (73%), Gaps = 3/311 (0%)
Query: 66 FIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQD 125
F++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + + LDPADEKLLEE+I P
Sbjct: 1 FVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPGVLLDPADEKLLEEEIQAPTS 60
Query: 126 SKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQV 185
SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y DRDSQ+
Sbjct: 61 SKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEEIYKDRDSQI 119
Query: 186 KAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPA 245
AIEKTF D++ I +HYSKP VTP+E+MPV+PDFK W PCAQVIFDSDPAP A
Sbjct: 120 AAIEKTFEDAQKAITQHYSKPRVTPIEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAA 179
Query: 246 QIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYN 305
+E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y E Y+YK+AREYN
Sbjct: 180 ALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLRKRKRDQEEEMDYAPEDVYDYKIAREYN 239
Query: 306 WNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPL 363
WNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR + G + N LVV HR +
Sbjct: 240 WNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRARAGVQSGTNAVLVVKHRDM 299
Query: 364 NATEFRIQRLR 374
N E Q R
Sbjct: 300 NEKELEAQEAR 310
>gi|340373169|ref|XP_003385114.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Amphimedon queenslandica]
Length = 420
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 256/349 (73%), Gaps = 9/349 (2%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
R++L+C V++ N LPD+PF+ KFI YPF+S RFI+Y TSLERN+++E LTE DLGV++D
Sbjct: 26 RNDLLCSVQFKNVLPDVPFEPKFITYPFDSLRFIQYNPTSLERNHRHETLTEVDLGVSVD 85
Query: 94 LINKDTYAPNYNIQLDPADEK-LLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRF 152
LI +T+ L+PAD+K LLEE++ +SKR+R HAR+VSWLRRTEYIS+E TR
Sbjct: 86 LILHETHT-----SLEPADDKILLEEEVTAQPESKRARQHARNVSWLRRTEYISSELTRS 140
Query: 153 QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVE 212
V + E KVG+++KK + NLY DRDSQ+ AIE TF ++ PI KHYSKP V E
Sbjct: 141 H-TVGETAETKVGYNVKKKLQGLNLYKDRDSQISAIESTFTAAQKPILKHYSKPGVEARE 199
Query: 213 IMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP 272
++P++PDFK W P AQVIFD+DPA G+ Q++EMSQAMIRG+MDE+ EQFVAYFLP
Sbjct: 200 VLPLFPDFKLWHLPFAQVIFDTDPAVYGKKEDRQMQEMSQAMIRGMMDENNEQFVAYFLP 259
Query: 273 TAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVR-DDAVYY 331
+ +T+ KR+ D + + ++EYEY ++R+YNWNVK+K+ KGYEE+YF +VR + VYY
Sbjct: 260 SPDTITKREEDDRDGISFRPDEEYEYSLSRDYNWNVKNKASKGYEESYFFVVRPGEGVYY 319
Query: 332 NELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFLEP 380
NE+ETRVRL+KRR K +A N++L+V HR + E Q +R LEP
Sbjct: 320 NEIETRVRLNKRRMKTKSA-MNSKLLVRHREMTQEEKYAQTVRLTQLEP 367
>gi|3287674|gb|AAC25503.1| F23149_1 [Homo sapiens]
gi|119577285|gb|EAW56881.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 510
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 225/458 (49%), Positives = 278/458 (60%), Gaps = 73/458 (15%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + R RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQ------------------REDGHRSGVVCRVKYCNSLPDIPFDPKFITYP 42
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 43 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 102
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 103 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 161
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ + W PCAQVIFDSDPAP
Sbjct: 162 RDSQITAIEKTFEDAQKSM-----------------------WINPCAQVIFDSDPAPKD 198
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 199 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 258
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETR------------VRLSKRRQKV 347
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETR VRLSKRR K
Sbjct: 259 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRYSAHSYLISLDLVRLSKRRAKA 318
Query: 348 GA-APNNTRLVVTHRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETT 406
G + N LVV HR +N E Q R+ LE E +EEEEEE E ++ +
Sbjct: 319 GVQSGTNALLVVKHRDMNEKELEAQEARKAQLE-----NHEPEEEEEEEMETEEKEAGGS 373
Query: 407 EAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSR 444
+ E+++G E+EG S+ EHS S R
Sbjct: 374 DEEQEKGSSSEKEG------------SEDEHSGSESER 399
>gi|390342619|ref|XP_003725696.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Strongylocentrotus purpuratus]
Length = 515
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/376 (54%), Positives = 252/376 (67%), Gaps = 54/376 (14%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTIQ+ E+++ ST PA RS++VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MPPTIQSGERKD-RERKSRSTTG------PA--RSDIVCRVKYANSLPDIPFDPKFITYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTY-APNYNIQLDPADEKLLEED 119
FE+ RF++Y +TSLERNYK+E+L EHDLGVTIDLIN DTY P +++LDPADEKLLEE+
Sbjct: 52 FEANRFVQYNATSLERNYKHELLAEHDLGVTIDLINPDTYRIPEEHVELDPADEKLLEEE 111
Query: 120 ILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYM 179
I TP DSKRSR H+++VSWLR+TEYIS+E R Q DK+E
Sbjct: 112 IATPGDSKRSRQHSKTVSWLRKTEYISSEYNRSQ-HSKDKIET----------------- 153
Query: 180 DRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
+KP+VTPVEI+PV+PDF+ W +PCAQVIFDSDPA
Sbjct: 154 ------------------------NKPHVTPVEILPVFPDFETWIHPCAQVIFDSDPALR 189
Query: 240 GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYK 299
+ Q+EEMSQAMIRG++DES EQFV YFLPT ET KRK D +++Y + +EYEYK
Sbjct: 190 DKSSHQQLEEMSQAMIRGMVDESEEQFVGYFLPTEETCRKRKRDFEEDIDYVEGEEYEYK 249
Query: 300 MAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGAAPNNTRLVV 358
+ REYNWNVK+K+ +GYEENYF + R V+YNELETRVRLSKRR K A +N+ LVV
Sbjct: 250 LTREYNWNVKNKASRGYEENYFFVFRKGKGVFYNELETRVRLSKRRVK-DAPSSNSLLVV 308
Query: 359 THRPLNATEFRIQRLR 374
HR L E +Q +R
Sbjct: 309 KHRELFDQESAMQDMR 324
>gi|226479828|emb|CAX73210.1| Putative DNA helicase INO80 [Schistosoma japonicum]
Length = 497
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 249/351 (70%), Gaps = 13/351 (3%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
L+CR+KY N LP++PFD KF+ YP E +RF++Y +TSLERNYK+E+LTE D+GV +DLI+
Sbjct: 29 LLCRLKYQNNLPELPFDPKFLVYPLEPSRFLQYVATSLERNYKHELLTETDVGVEVDLID 88
Query: 97 KDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTE-QTRFQPQ 155
D + + L P DE+LLE++ T ++++SRH +SVSWLR+TEYISTE R+
Sbjct: 89 PDVFRIDKKATLHPDDERLLEDEAPTFVNARKSRHQ-KSVSWLRKTEYISTELYNRWNKS 147
Query: 156 VMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMP 215
+KVE+++G+++K++ E+ +Y DR+SQ+ AIE+TF ++ PI KHYSKPNV +E++P
Sbjct: 148 --EKVESRLGYNVKRHLNEEIVYRDRESQINAIEETFNAARKPIHKHYSKPNVHALEVLP 205
Query: 216 VYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAE 275
V PDF W+YPCAQVIFD DP+ + Q EE++QAMIRG++DESG+ FVAYFLPT +
Sbjct: 206 VLPDFTLWRYPCAQVIFDDDPSRKNKTTTEQKEEVNQAMIRGMVDESGDHFVAYFLPTEQ 265
Query: 276 TLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELE 335
T R+LD + L YT+ YEY++ REYNWNVK+K+ YEENYF R D VYYNELE
Sbjct: 266 TKQLRRLDAENRLPYTEGAAYEYELTREYNWNVKNKTMANYEENYFFCFRKDGVYYNELE 325
Query: 336 TRVRLSKRRQ------KVGA--APNNTRLVVTHRPLNATEFRIQRLRERFL 378
TRVRLSKRR+ VG AP TRL+V HR E + Q R L
Sbjct: 326 TRVRLSKRRKLNQSGTNVGVLQAP-KTRLIVHHRDFTDEELKAQTDRLYML 375
>gi|427796871|gb|JAA63887.1| Putative rna polymerase ii-associated factor 1, partial
[Rhipicephalus pulchellus]
Length = 619
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/256 (65%), Positives = 203/256 (79%), Gaps = 6/256 (2%)
Query: 46 TLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYN 105
TLPDIPFD KFI+YPFE RF+ YK+TSLERNYK+++LTEHDLGVTIDLI+ TY + N
Sbjct: 121 TLPDIPFDPKFISYPFEPNRFVSYKATSLERNYKHDLLTEHDLGVTIDLIDPKTYEIDPN 180
Query: 106 IQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVG 165
L P DEKLLEED LTPQDSKRSRHH V WL++TEYI+TE +R+ Q E KVG
Sbjct: 181 AVLHPDDEKLLEEDTLTPQDSKRSRHHNLVVPWLKKTEYIATEFSRYG-QTGVNTETKVG 239
Query: 166 FSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKY 225
+++KK FKE++LYMDR+SQ+ AI KTF +++ PIE HYSKPNV PVE++P++PD WKY
Sbjct: 240 YNVKKLFKEEDLYMDRESQINAINKTFEEAQKPIEAHYSKPNVKPVEVLPLFPDSDLWKY 299
Query: 226 PCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQL 285
P AQV+FDSDPAP+ Q+EEMSQAMIRGVMDESGEQFVAYFLPT +T+ KRK D
Sbjct: 300 PFAQVMFDSDPAPI-----TQLEEMSQAMIRGVMDESGEQFVAYFLPTEDTIKKRKRDAE 354
Query: 286 SNLEYTDEQEYEYKMA 301
++Y D+ EYEY+MA
Sbjct: 355 EGMDYMDDDEYEYRMA 370
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/147 (66%), Positives = 114/147 (77%), Gaps = 5/147 (3%)
Query: 235 DPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQ 294
DPAP+ Q+EEMSQAMIRGVMDESGEQFVAYFLPT +T+ KRK D ++Y D+
Sbjct: 373 DPAPI-----TQLEEMSQAMIRGVMDESGEQFVAYFLPTEDTIKKRKRDAEEGMDYMDDD 427
Query: 295 EYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNT 354
EYEY+MAREYNWNVK+K+ KGYEENYF + RDD VYYNELETRVRL+KRR K G PNN+
Sbjct: 428 EYEYRMAREYNWNVKNKASKGYEENYFFVFRDDGVYYNELETRVRLTKRRLKPGVQPNNS 487
Query: 355 RLVVTHRPLNATEFRIQRLRERFLEPP 381
+LVV HRPLN E + Q+ R LE P
Sbjct: 488 KLVVRHRPLNEMEHKTQQARLTQLEQP 514
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 90/122 (73%), Gaps = 11/122 (9%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQ+ S+ +++ +P ERRSELVCRVKY NTLPDIPFD KFI+YP
Sbjct: 9 MAPTIQSGSSSVERDRK-----------KPGERRSELVCRVKYCNTLPDIPFDPKFISYP 57
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
FE RF+ YK+TSLERNYK+++LTEHDLGVTIDLI+ TY + N L P DEKLLEED
Sbjct: 58 FEPNRFVSYKATSLERNYKHDLLTEHDLGVTIDLIDPKTYEIDPNAVLHPDDEKLLEEDT 117
Query: 121 LT 122
LT
Sbjct: 118 LT 119
>gi|148692191|gb|EDL24138.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 470
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/349 (53%), Positives = 231/349 (66%), Gaps = 27/349 (7%)
Query: 101 APNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKV 160
AP + LDPADEKLLEE+I P SKRS+ HA+ V W+R+TEYISTE R+ +K
Sbjct: 28 APYPLVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKP 86
Query: 161 EAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDF 220
E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDF
Sbjct: 87 EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDF 146
Query: 221 KYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKR 280
K W PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP ETL KR
Sbjct: 147 KMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKR 206
Query: 281 KLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVR 339
K DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVR
Sbjct: 207 KRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVR 266
Query: 340 LSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRERFLEPP----------------- 381
LSKRR K G + N LVV HR +N E Q R+ LE
Sbjct: 267 LSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEA 326
Query: 382 --NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---EGGEREGGGEGE 425
++EE+E+ E+E +E+ G +E++R+EG E ++ G GE E
Sbjct: 327 GGSDEEQEKGSSSEKEGSEDEHSG--SESDREEGDRDEASDKSGSGEDE 373
>gi|393905193|gb|EFO23108.2| Paf1 family protein [Loa loa]
Length = 569
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 189/405 (46%), Positives = 262/405 (64%), Gaps = 14/405 (3%)
Query: 10 AGTPSEKRTPSTHSTPVPPRPAER--RSELVCRVKYNNTLPDIPFDCKFIAYPFES-TRF 66
+G+ S TP H PV R ER +++ +CRVKY+N LPDIPFD KF+A PF S +RF
Sbjct: 7 SGSSSTTGTPRRH--PVNGR-EERPVKTDFLCRVKYSNALPDIPFDTKFLACPFVSLSRF 63
Query: 67 IEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYA--PNYNIQLDPADEKLLEEDILTPQ 124
+YKS+SLE+N+K+E+L E D GV IDLIN +TY P+ + P D +LLE++ PQ
Sbjct: 64 TDYKSSSLEKNFKFELLCEPDCGVNIDLINPETYYVDPDNPKKHHPIDLELLEDEQANPQ 123
Query: 125 DSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQ 184
+ +RS H++ V W+R+TEYIS+E TRF ++ E ++G+S KK F+ D LY DR SQ
Sbjct: 124 NLRRSLQHSKMVPWMRKTEYISSEFTRFGVSA-ERQETRIGYSTKKKFQTDVLYRDRTSQ 182
Query: 185 VKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIP 244
+ AI KTF D+ + +H +K VT VE +P+ PDF W +P A V+FD DP P +
Sbjct: 183 IAAINKTFDDASKTVLQHPTKKGVTAVEELPLLPDFDNWMHPFALVVFDGDPIPQNDKVD 242
Query: 245 AQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREY 304
AQ M QA+IRG+MDE GEQFV YFLP+ ETLDKR D LE+ + YEY+ R+Y
Sbjct: 243 AQTL-MPQALIRGMMDEEGEQFVTYFLPSKETLDKRLKDAEDGLEFDSDYVYEYQSVRDY 301
Query: 305 NWNVKSKSCKGYEENYFLI-VRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPL 363
NW V++KS KGYE++ FL +RD AVYYNELET+V L++R+ K T+L+V +R
Sbjct: 302 NWLVRNKSTKGYEQDNFLFTIRDGAVYYNELETKVSLNRRKTK--RIRQETKLMVRNRAY 359
Query: 364 NATEFRIQRLR-ERFLEPPNEEEEEEDEEEEEEEAEETQQGETTE 407
+ E Q+ R L P +E+++E E+ E +E + + E E
Sbjct: 360 DENELNAQQERLNNLLHPYDEKDDEGSEQGSSEGSERSHEDEIVE 404
>gi|324512878|gb|ADY45317.1| RNA polymerase II-associated factor 1 [Ascaris suum]
Length = 470
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 179/356 (50%), Positives = 240/356 (67%), Gaps = 14/356 (3%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFES-TRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
+S+ +CRVKY+NTLPDIPF+ KF+A PF S +RFI+YK TSLE+N+K+E+L E DLGV I
Sbjct: 34 KSDFLCRVKYSNTLPDIPFEAKFLACPFTSLSRFIDYKQTSLEKNFKFELLAESDLGVKI 93
Query: 93 DLINKDTY-----APNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYIST 147
DLIN +TY AP QL+ D +LLE++ PQ+S+RS H++ V W+R+TEYIS+
Sbjct: 94 DLINPETYFVDPDAPKKQ-QLNAIDAELLEDEQANPQNSRRSLQHSKMVPWMRKTEYISS 152
Query: 148 EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPN 207
E TRF ++ E K+G+S KK F+ + LY DR SQ+ AI KTF ++ P+ +H K
Sbjct: 153 EFTRFGVS-NERQETKIGYSTKKKFQNEVLYRDRASQIAAINKTFDEAAKPVTRHPMKKG 211
Query: 208 VTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG-RPIPAQIEEMSQAMIRGVMDESGEQF 266
VT VE + + PDF+ WK+P A V+FDSDP P + P + MSQA+IRG+MDE GEQF
Sbjct: 212 VTAVEELYLLPDFENWKHPFALVVFDSDPVPQSEKANPGTL--MSQALIRGMMDEEGEQF 269
Query: 267 VAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI-VR 325
V YFLPT ETLDKR D + ++ + YEY R+YNW V++KS KGYE++ FL R
Sbjct: 270 VTYFLPTKETLDKRMTDTENGKQFDPDYTYEYYSVRDYNWFVRNKSTKGYEQDNFLFSFR 329
Query: 326 DDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFLEPP 381
D VYYNELETRV L++R+ K + T+L+V +R + E Q RE L P
Sbjct: 330 DSGVYYNELETRVSLTRRKAK--RSRQQTKLMVRNRDYDENELATQEDREHHLLRP 383
>gi|256079279|ref|XP_002575916.1| procollagen-lysine2-oxoglutarate 5-dioxygenase [Schistosoma
mansoni]
gi|360044866|emb|CCD82414.1| putative procollagen-lysine,2-oxoglutarate 5-dioxygenase
[Schistosoma mansoni]
Length = 921
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 231/352 (65%), Gaps = 40/352 (11%)
Query: 29 RPAERRSE-LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHD 87
R E ++E L+CR+KY N LP++PFD KF+ YP E +RF++Y +TSLERNYK+E+LTE D
Sbjct: 20 RGKEFKTESLLCRLKYQNNLPELPFDPKFLVYPLEPSRFLQYVATSLERNYKHELLTETD 79
Query: 88 LGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYIST 147
+GV +DLI+ D + + L P DE+LLE++ T ++++SRH
Sbjct: 80 VGVEVDLIDPDVFRIDKRATLHPDDERLLEDEAPTFVNARKSRHQ--------------- 124
Query: 148 EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPN 207
K+G+++K++ E+ +Y DR+SQ+ AIE+TF ++ PI KHYSKPN
Sbjct: 125 ---------------KLGYNVKRHLNEEIVYRDRESQINAIEETFKAAEKPIHKHYSKPN 169
Query: 208 VTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFV 267
V +E++PV PDF W+YPCAQVIFD DP+ + Q EE++QAMIRG++DESG+ FV
Sbjct: 170 VHALEVLPVLPDFTLWRYPCAQVIFDDDPSRKNKTTTEQKEEVNQAMIRGMVDESGDHFV 229
Query: 268 AYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDD 327
AYFLPT +T R+LD + YT++ YEY++ REYNWNVK+K+ YEENYF R D
Sbjct: 230 AYFLPTEQTKQLRRLDAENQTPYTEDAAYEYELTREYNWNVKNKTMANYEENYFFCFRKD 289
Query: 328 AVYYNELETRVRLSKRRQ------KVGA--APNNTRLVVTHRPLNATEFRIQ 371
VYYNELETRVRLSKRR+ VGA AP TRL+V HR E + Q
Sbjct: 290 GVYYNELETRVRLSKRRKLNQSGTNVGALQAP-KTRLIVHHRDFTDEELKAQ 340
>gi|312076665|ref|XP_003140963.1| Paf1 family protein [Loa loa]
Length = 385
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 233/343 (67%), Gaps = 11/343 (3%)
Query: 10 AGTPSEKRTPSTHSTPVPPRPAER--RSELVCRVKYNNTLPDIPFDCKFIAYPFES-TRF 66
+G+ S TP H PV R ER +++ +CRVKY+N LPDIPFD KF+A PF S +RF
Sbjct: 7 SGSSSTTGTPRRH--PVNGR-EERPVKTDFLCRVKYSNALPDIPFDTKFLACPFVSLSRF 63
Query: 67 IEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYA--PNYNIQLDPADEKLLEEDILTPQ 124
+YKS+SLE+N+K+E+L E D GV IDLIN +TY P+ + P D +LLE++ PQ
Sbjct: 64 TDYKSSSLEKNFKFELLCEPDCGVNIDLINPETYYVDPDNPKKHHPIDLELLEDEQANPQ 123
Query: 125 DSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQ 184
+ +RS H++ V W+R+TEYIS+E TRF ++ E ++G+S KK F+ D LY DR SQ
Sbjct: 124 NLRRSLQHSKMVPWMRKTEYISSEFTRFGVSA-ERQETRIGYSTKKKFQTDVLYRDRTSQ 182
Query: 185 VKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIP 244
+ AI KTF D+ + +H +K VT VE +P+ PDF W +P A V+FD DP P +
Sbjct: 183 IAAINKTFDDASKTVLQHPTKKGVTAVEELPLLPDFDNWMHPFALVVFDGDPIPQNDKVD 242
Query: 245 AQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREY 304
AQ M QA+IRG+MDE GEQFV YFLP+ ETLDKR D LE+ + YEY+ R+Y
Sbjct: 243 AQTL-MPQALIRGMMDEEGEQFVTYFLPSKETLDKRLKDAEDGLEFDSDYVYEYQSVRDY 301
Query: 305 NWNVKSKSCKGYEENYFLI-VRDDAVYYNELETRVRLSKRRQK 346
NW V++KS KGYE++ FL +RD AVYYNELET+V L++R+ K
Sbjct: 302 NWLVRNKSTKGYEQDNFLFTIRDGAVYYNELETKVSLNRRKTK 344
>gi|339239561|ref|XP_003381335.1| 1-pyrroline-5-carboxylate dehydrogenase [Trichinella spiralis]
gi|316975641|gb|EFV59049.1| 1-pyrroline-5-carboxylate dehydrogenase [Trichinella spiralis]
Length = 1198
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 236/361 (65%), Gaps = 16/361 (4%)
Query: 32 ERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVT 91
E R ++ + Y+NTLPD+PF+ KF+ +PF + R ++Y++T +ER Y E++TE D+G+
Sbjct: 27 EVRYDMPFKPMYSNTLPDVPFEAKFLPHPFPADRHVKYETTMMERAYTGELVTEDDVGIF 86
Query: 92 IDLINKDTYAPNYN--IQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQ 149
IDL+ D Y PN N +QL P DE L ++ K+SRH ++V W+RRTEYIST+
Sbjct: 87 IDLVLIDKYEPNPNEPVQLHPTDELLCSDEDTLLSTMKKSRHGTKAVPWMRRTEYISTDY 146
Query: 150 TRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVT 209
+RF Q ++ E K+G+ I+K KE +LY DR+SQ+ AI KTF D+K P+ +H+SK +V
Sbjct: 147 SRFGVQT-ERQETKLGYHIQKVLKEASLYRDRESQLTAINKTFEDAKKPVREHFSKRDVY 205
Query: 210 PVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEE------MSQAMIRGVMDESG 263
VE +P+ PDF WKYP AQVIFD DPAP + +EE + +AMIRG+MDE G
Sbjct: 206 AVEELPLLPDFDAWKYPFAQVIFDVDPAPRDK---TSLEETLATDQICRAMIRGMMDEKG 262
Query: 264 EQFVAYFLPTAETLDKRKLDQLSNLEYTD-EQEYEYKMAREYNWNVKSKSCKGYEENYFL 322
EQFVAYF+PT ET+ K K + ++ D +++K+ REYNW+VK+K+ GYEEN+F
Sbjct: 263 EQFVAYFVPTLETIRKLKSVEGKDISEMDLSTPFDFKLLREYNWSVKNKASVGYEENHFF 322
Query: 323 IVRDDAVYYNELETRVRLSKRRQK---VGAAPNNTRLVVTHRPLNATEFRIQRLRERFLE 379
RD YYNELETRVRL++RR K V +A N+RL+V +R N E R +
Sbjct: 323 SFRDGRAYYNELETRVRLNRRRVKDGHVHSAVPNSRLIVRYRDFNDQELAALSARSMIVN 382
Query: 380 P 380
P
Sbjct: 383 P 383
>gi|426388670|ref|XP_004060756.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 3
[Gorilla gorilla gorilla]
Length = 288
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/239 (61%), Positives = 179/239 (74%), Gaps = 2/239 (0%)
Query: 105 NIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKV 164
+ LDPADEKLLEE+I P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+
Sbjct: 44 TVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKI 102
Query: 165 GFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWK 224
G S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W
Sbjct: 103 GVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWI 162
Query: 225 YPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQ 284
PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ
Sbjct: 163 NPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQ 222
Query: 285 LSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSK 342
++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNELET ++ S+
Sbjct: 223 EEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETSIQYSQ 281
>gi|194378112|dbj|BAG57806.1| unnamed protein product [Homo sapiens]
Length = 288
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/245 (60%), Positives = 180/245 (73%), Gaps = 2/245 (0%)
Query: 106 IQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVG 165
+ LDPADEKLLEE+I P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G
Sbjct: 45 VLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIG 103
Query: 166 FSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKY 225
S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W
Sbjct: 104 VSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWIN 163
Query: 226 PCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQL 285
PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ
Sbjct: 164 PCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQE 223
Query: 286 SNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRR 344
++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNELET ++ S
Sbjct: 224 EEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETSIQYSHML 283
Query: 345 QKVGA 349
+ A
Sbjct: 284 YNLVA 288
>gi|170572245|ref|XP_001892038.1| Paf1 family protein [Brugia malayi]
gi|158603082|gb|EDP39151.1| Paf1 family protein [Brugia malayi]
Length = 353
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/322 (48%), Positives = 211/322 (65%), Gaps = 10/322 (3%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFES-TRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
+++ +CRVKY+N LPDIPFD KF+A PF S +RF +YKS+SLE+N+K+E+L E D GV I
Sbjct: 30 KADFLCRVKYSNALPDIPFDTKFLACPFVSLSRFTDYKSSSLEKNFKFELLCEPDCGVNI 89
Query: 93 DLINKDTYA--PNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
DLIN +TY P+ + P D +LLE++ PQ+ +RS H++ V W+R+TEYIS+E T
Sbjct: 90 DLINPETYYVDPDSPKKHHPIDLELLEDEQANPQNLRRSLQHSKMVPWMRKTEYISSEFT 149
Query: 151 RFQPQVM---DKVEAKVGFSIKKNFKEDNLYMD--RDSQVKAIEKTFADSKLPIEKHYSK 205
RF +V + + + K +Y R SQ+ AI KTF D+ + H +K
Sbjct: 150 RFGVSAERQETRVSRFLNWLLYKRRNSKRMYYTGIRASQIAAINKTFDDASKSVLNHPTK 209
Query: 206 PNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQ 265
VT VE + + PDF W +P A V+FD DP P + AQ M QA+IRG+MDE GEQ
Sbjct: 210 KGVTAVEELSLLPDFDNWMHPFALVVFDGDPIPQNDKVDAQ-TLMPQALIRGMMDEEGEQ 268
Query: 266 FVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI-V 324
FV YFLP+ ETLDKR D LE+ + YEY+ R+YNW V++KS KGYE++ FL +
Sbjct: 269 FVTYFLPSRETLDKRLKDADEGLEFDSDYVYEYQSVRDYNWLVRNKSTKGYEQDNFLFTI 328
Query: 325 RDDAVYYNELETRVRLSKRRQK 346
RD AVYYNELET+V L++R+ K
Sbjct: 329 RDGAVYYNELETKVSLTRRKTK 350
>gi|313238722|emb|CBY13745.1| unnamed protein product [Oikopleura dioica]
Length = 953
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 196/294 (66%), Gaps = 8/294 (2%)
Query: 93 DLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRF 152
DLI+ +TY L P D LL+E+ DS+RS H R +++ R +EYIS + ++
Sbjct: 328 DLIDPETYNVKPGTVLHPDDSALLQEEDSKKNDSRRSGIHNRQLTFFRPSEYISQDFKQY 387
Query: 153 QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVE 212
DKVE+K+G +K FK+D +Y DRD+Q+KAIEKTF D + + +HYSK +V VE
Sbjct: 388 GSNAKDKVESKLGAGVKDRFKDDEIYKDRDAQIKAIEKTFKDVQEDVMEHYSKKDVHAVE 447
Query: 213 IMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP 272
++P+ PDF WK+PCAQVIFD+DPAP G Q E MSQA+IRG+ DE +QFVAYFLP
Sbjct: 448 VLPLLPDFHTWKHPCAQVIFDTDPAPKGHSKEEQCEIMSQAIIRGMQDEQNQQFVAYFLP 507
Query: 273 TAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVR-DDAVYY 331
T ET++KR D+ L++ D+ Y+YK+ +EYNWNVK+K+ KGYEEN+F R +D VYY
Sbjct: 508 TQETIEKRAKDKSLGLDFDDDAVYDYKLTKEYNWNVKNKASKGYEENFFFCYRPNDGVYY 567
Query: 332 NELETRVRLSKR-RQK----VGAAPN--NTRLVVTHRPLNATEFRIQRLRERFL 378
NELETRVRLSKR RQK V N NT L V HR E + Q++RE L
Sbjct: 568 NELETRVRLSKRVRQKDANGVDGLANYFNTVLQVKHRENTEDEDKAQKMRENAL 621
>gi|350585207|ref|XP_003355968.2| PREDICTED: RNA polymerase II-associated factor 1 homolog [Sus
scrofa]
Length = 257
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/221 (57%), Positives = 162/221 (73%), Gaps = 9/221 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQR--EDGHRPNSHRT------LPERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFK 221
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFK 212
>gi|196016881|ref|XP_002118290.1| hypothetical protein TRIADDRAFT_33941 [Trichoplax adhaerens]
gi|190579121|gb|EDV19224.1| hypothetical protein TRIADDRAFT_33941 [Trichoplax adhaerens]
Length = 347
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 208/335 (62%), Gaps = 4/335 (1%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RS+L+CR+KY NTLPDIPFD KF+ YPFE+ RF +Y +TSLER +K+E+LT+ D GV
Sbjct: 1 RSDLLCRIKYRNTLPDIPFDPKFLRYPFENNRFTDYNTTSLEREHKHELLTDTDAGVKNG 60
Query: 94 LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
LI+ D Y + + +LD AD+ LL + D K +RH +R+VSW+RR EY+S E R
Sbjct: 61 LIDPDAYIIDEDAELDDADKALLGIEGSASMDRKGTRH-SRTVSWMRRNEYLSNEGVR-M 118
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEI 213
Q DK E KVG+S++K K Y D++SQ+KAIEKTF +K PI H +KP VT
Sbjct: 119 AQNPDKPETKVGYSVRKYAKNLEKYKDKESQIKAIEKTFEATKKPIIDHPTKPGVTAKRS 178
Query: 214 MPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPT 273
P++PDF+ WKY A V FDSDP+ + ++MS ++I+G+ ++G QFV Y+ P
Sbjct: 179 YPLFPDFEMWKYSLALVTFDSDPSKLTDGSKLTEQQMSNSVIKGMQVDTGNQFVGYYTPI 238
Query: 274 AETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNE 333
A KRK+ + + E T +Y +AREYNW VKS+ G + + ++ ++N+
Sbjct: 239 ATDAKKRKVSENQDSE-TSRNCRDYNLAREYNWVVKSRD-SGRDVSNVIMFEYSFCHFNK 296
Query: 334 LETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEF 368
L RV+LSK+R V N RL V +R N E
Sbjct: 297 LFERVKLSKQRANVKGDNVNNRLTVEYRDFNEEEL 331
>gi|402590790|gb|EJW84720.1| hypothetical protein WUBG_04371, partial [Wuchereria bancrofti]
Length = 291
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/260 (50%), Positives = 175/260 (67%), Gaps = 5/260 (1%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFES-TRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
+++ +CRVKY+N LPDIPFD KF+A PF S +RF +YKS+SLE+N+K+E+L E D GV I
Sbjct: 30 KADFLCRVKYSNALPDIPFDTKFLACPFVSLSRFTDYKSSSLEKNFKFELLCEPDCGVNI 89
Query: 93 DLINKDTYA--PNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
DLIN +TY P+ + P D +LLE++ PQ+ +RS H++ V W+R+TEYIS+E T
Sbjct: 90 DLINPETYYVNPDSPKKHHPIDLELLEDEQANPQNLRRSLQHSKMVPWMRKTEYISSEFT 149
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF ++ E ++G+ KK F+ D LY DR SQ+ AI KTF D+ + H +K VT
Sbjct: 150 RFGVSS-ERQETRIGYCTKKKFQTDVLYRDRASQIAAINKTFDDASKTVLHHPTKKGVTA 208
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYF 270
VE + + PDF W +P A V+FD DP P + AQ M QA+IRG+MDE GEQFV YF
Sbjct: 209 VEELSLLPDFDNWMHPFALVVFDGDPIPQNDKVDAQ-TLMPQALIRGMMDEEGEQFVTYF 267
Query: 271 LPTAETLDKRKLDQLSNLEY 290
LP+ ETLDKR D LE+
Sbjct: 268 LPSRETLDKRLKDAEEGLEF 287
>gi|114677172|ref|XP_001135849.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pan
troglodytes]
Length = 203
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 163 KVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKY 222
++G S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK
Sbjct: 16 RIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKM 75
Query: 223 WKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKL 282
W PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK
Sbjct: 76 WINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKR 135
Query: 283 DQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETR 337
DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETR
Sbjct: 136 DQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETR 191
>gi|341892745|gb|EGT48680.1| hypothetical protein CAEBREN_08454 [Caenorhabditis brenneri]
Length = 424
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 219/371 (59%), Gaps = 15/371 (4%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPF-ESTRFIEYKSTSLERNYKYEVLTEHDLGVT 91
R+ + + + ++ N +PD+PFD KF+ PF +RF+EYK S++R++K+ V+ + D+G+
Sbjct: 15 RKVDFMLKPRFTNNVPDVPFDAKFMPCPFVPLSRFVEYKQCSIDRDFKHAVICDDDMGLN 74
Query: 92 IDLINKDTYAPNYN-IQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
+DLI+ Y + N I++D D+ LLE++ T KRS H++ V W+R+TEYISTE
Sbjct: 75 VDLIDLQKYDEDKNPIEMDEKDQILLEDESATKMSMKRSAQHSKLVPWMRKTEYISTEFN 134
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + P+++H++K + P
Sbjct: 135 RFGITA-DRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVKEHHTKKGMKP 193
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAM---IRGVMDESGEQFV 267
VE ++PDFK+W+Y V FD D + IP EE QA I M+ +QF
Sbjct: 194 VEECFIFPDFKHWQYLFTHVQFDGD--TITSDIPE--EEKKQAQESSIIKAMNVDDKQFA 249
Query: 268 AYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDD 327
A F+PT E L D Y +++YE+ ++REY+W ++ + + + RD
Sbjct: 250 AVFVPTIECLTNYMDDLELERPYDPDRKYEFLLSREYDWKMEQVPPRD-RDAFVFYYRDG 308
Query: 328 AVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEF--RIQRLRERFLEPPNEEE 385
Y+E+++ V++++RR+ + ++++VT+R N E +R E + +P ++
Sbjct: 309 IFQYDEIDSNVKMTRRRKMYMS--RKSKMMVTYREFNEEEKAEMDKRTAELYEQPKTRKQ 366
Query: 386 EEEDEEEEEEE 396
E + +EEEE
Sbjct: 367 EMLERVQEEEE 377
>gi|268557112|ref|XP_002636545.1| Hypothetical protein CBG23232 [Caenorhabditis briggsae]
Length = 453
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 219/370 (59%), Gaps = 13/370 (3%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPF-ESTRFIEYKSTSLERNYKYEVLTEHDLGVT 91
R+ + + + ++ N +PD+PFD KF+ PF +RF+EYK ++++R+ K+ ++ + D+G++
Sbjct: 39 RKVDFMLKPRFTNNVPDVPFDAKFMPCPFVPLSRFVEYKPSTVDRDCKHAIICDDDMGLS 98
Query: 92 IDLINKDTYAPN-YNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
+DLI+ Y + + +D D LLE++ + KRS H++ V W+R+TEYISTE
Sbjct: 99 VDLIDLRKYDEDPADYAMDEKDNILLEDESASKMSIKRSAQHSKLVPWMRKTEYISTEFN 158
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + P+ H++K N+ P
Sbjct: 159 RFG-VTADRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVTAHHTKKNMKP 217
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAP--VGRPIPAQIEEMSQAMIRGVMDESGEQFVA 268
VE ++PDF++WKY V FD D G Q +E S +I+G M+ ++F A
Sbjct: 218 VEECYIFPDFEHWKYLFTHVQFDGDTITTEFGEDEKRQAQESS--VIKG-MEYEDKKFAA 274
Query: 269 YFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDA 328
F+PT E L D + + +Q+YE+ ++REY+W ++ + + + R
Sbjct: 275 LFVPTIEGLTHMMEDLEMDRPFDPDQKYEFLLSREYDWKMEHVPPRD-RDVFVFYQRGPT 333
Query: 329 VYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL--EPPNEEEE 386
+ YNE+++ V++++RR+ + N++L + +RP N TE R RE L +P N +E
Sbjct: 334 MQYNEIDSNVKMTRRRKMCLS--RNSKLTIQYRPFNETETEAMRRREIELYEQPKNRRQE 391
Query: 387 EEDEEEEEEE 396
+ EEE+E
Sbjct: 392 RLERMEEEKE 401
>gi|114680217|ref|XP_512993.2| PREDICTED: RNA polymerase II-associated factor 1 homolog, partial
[Pan troglodytes]
Length = 448
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 133/177 (75%), Gaps = 7/177 (3%)
Query: 19 PSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNY 78
P++H T +P RS +VCRVKY N+LPDIPFD KFI YPF+ RF++YK+TSLE+ +
Sbjct: 103 PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQH 156
Query: 79 KYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSW 138
K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I P SKRS+ HA+ V W
Sbjct: 157 KHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPW 216
Query: 139 LRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADS 195
+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF DS
Sbjct: 217 MRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDS 272
>gi|308479030|ref|XP_003101725.1| hypothetical protein CRE_11174 [Caenorhabditis remanei]
gi|308262936|gb|EFP06889.1| hypothetical protein CRE_11174 [Caenorhabditis remanei]
Length = 426
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 203/346 (58%), Gaps = 15/346 (4%)
Query: 27 PPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPF-ESTRFIEYKSTSLERNYKYEVLTE 85
PPR + + + + ++ N +PD+PFD KF+ PF +RF+EYK + ++R+ K+ V+ +
Sbjct: 13 PPR----KVDFMLKPRFTNNVPDVPFDAKFMPCPFVPLSRFVEYKQSGIDRDCKHAVICD 68
Query: 86 HDLGVTIDLINKDTYAPNYNIQLDPADEK---LLEEDILTPQDSKRSRHHARSVSWLRRT 142
D+G+ +DLI+ Y + +++ +EK LLE++ + KRS H++ V W+R+T
Sbjct: 69 DDMGLNVDLIDLRKYDEDVVGEVEELNEKDQYLLEDENTSKMSLKRSAQHSKLVPWMRKT 128
Query: 143 EYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKH 202
EYISTE RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + PI +H
Sbjct: 129 EYISTEFNRFGVTA-DRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFDDVRKPILEH 187
Query: 203 YSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDES 262
++K V PVE ++PDF++WK+ A V FD D + + ++I+ M+
Sbjct: 188 HTKKGVKPVEEAYIFPDFEHWKHLFAYVQFDGDTVTTDLAGAEKRQAQESSVIKA-MEFE 246
Query: 263 GEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFL 322
++F A F+PT E L D + + +Q+YE+ ++REY++ K + + + F+
Sbjct: 247 DQKFAALFVPTIECLTHMMEDLEMDRSFDPDQKYEFLLSREYDF--KYEPVAPRDRDVFV 304
Query: 323 IVRDDAVY-YNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATE 367
+ +Y YNE+E+ V++++RR+ A ++L + +RP E
Sbjct: 305 FYHRNGIYQYNEIESNVKMTRRRKM--ALSRASKLTIQYRPFTEQE 348
>gi|17559000|ref|NP_505925.1| Protein C55A6.9 [Caenorhabditis elegans]
gi|74961204|sp|P90783.2|PAF1_CAEEL RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|3875280|emb|CAB02869.1| Protein C55A6.9 [Caenorhabditis elegans]
Length = 425
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 192/331 (58%), Gaps = 6/331 (1%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFEST-RFIEYKSTSLERNYKYEVLTEHDLGVT 91
R+ + + + ++ NT+PD+PFD KF+ PF RF+E++ ++ R+YK+ V+ + D+G+
Sbjct: 15 RKVDFMLKPRFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPAAIYRDYKHAVICDDDMGLN 74
Query: 92 IDLINKDTYAPN-YNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
+DLI+ Y + ++D D LLE+D +KRS+ H++ V W+R+TEYISTE
Sbjct: 75 VDLIDLKKYDEDPIETEIDEKDNILLEDDGAAKLIAKRSQQHSKLVPWMRKTEYISTEFN 134
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + P+++HYSK V
Sbjct: 135 RFG-VTADRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVKEHYSKKGVKA 193
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYF 270
VE V+PDF +WK+ A V FD D + ++ ++ + M+ ++F A F
Sbjct: 194 VEESFVFPDFDHWKHLFAHVQFDGDTITTEFEEEDERQQARESSVIKAMEFEDQKFAAVF 253
Query: 271 LPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVY 330
+PT L D + ++ +YE+ ++REY + ++ + + + + R++
Sbjct: 254 VPTIGCLTSFMDDLELERPFDEDMKYEFLLSREYTFKMEHLPPRD-RDVFIMYHRNNVFQ 312
Query: 331 YNELETRVRLSKRRQKVGAAPNNTRLVVTHR 361
YNE++ V+++ R+ A ++L +T+R
Sbjct: 313 YNEVDCNVKMT--RKPKMALSRKSKLTLTYR 341
>gi|349803071|gb|AEQ17008.1| putative paf1 protein [Pipa carvalhoi]
Length = 232
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
Query: 245 AQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREY 304
A +E MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ L+Y ++ Y+YK+AREY
Sbjct: 1 AALEMMSQAMIRGMMDEEGNQFVAYFLPGEETMRKRKRDQDEGLDYMADEIYDYKIAREY 60
Query: 305 NWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRP 362
NWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR
Sbjct: 61 NWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVVKHRD 120
Query: 363 LNATEFRIQRLR 374
+N E Q R
Sbjct: 121 MNEKELEAQEAR 132
>gi|320169024|gb|EFW45923.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 500
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 178/313 (56%), Gaps = 22/313 (7%)
Query: 41 VKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTY 100
+KY NTLPD+PFD K + Y + R I+Y +TSLER +K+++LTE +L + IDLI+ D Y
Sbjct: 118 IKYKNTLPDVPFDPKLLYYQLDPMRSIQYATTSLERQFKFDILTEANLSIPIDLIDPDRY 177
Query: 101 APNYN--IQLDPADEKLL-EEDILTPQDS-KRSRHHARSVSWLRRTEYISTEQTR-FQPQ 155
+ QL D+ LL +E + T D K++R A +V+WLR T+YIS EQ + +P+
Sbjct: 178 KIPFGQTAQLSAVDQTLLSDEPLSTVMDPKKKARLEAENVAWLRATQYISAEQDKPLEPK 237
Query: 156 VMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMP 215
+ +E ++G ++ + L DR SQ++AI++TF +K PI H + PN+T + + P
Sbjct: 238 --ENLERRIGVLVQDVITQ-GLRQDRASQIRAIQETFDHAKRPIITHPNHPNLTAISVQP 294
Query: 216 VYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMS-QAMIRGVMDESGEQFVAYFLP-T 273
++P + + AQ+ FDS AP +PI +++E+ AM G++ + + YFLP +
Sbjct: 295 IFP-YPHHLEQLAQISFDS--APANKPIGSKLEDSDFVAMSAGMLKATRPGVMTYFLPAS 351
Query: 274 AETLDKRKLDQLSNLEYTDEQ--EYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYY 331
E + KR+ LE ++Q E+ REY + V + E+N+ + V Y
Sbjct: 352 TEVVRKRR-----RLESGEDQAATLEFASVREYTFQVPKGTTT--EDNFVFMEMGGQVLY 404
Query: 332 NELETRVRLSKRR 344
+ R +++RR
Sbjct: 405 APIGRRWNMTRRR 417
>gi|440794036|gb|ELR15207.1| hypothetical protein ACA1_218610 [Acanthamoeba castellanii str.
Neff]
Length = 356
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 178/326 (54%), Gaps = 38/326 (11%)
Query: 41 VKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTY 100
+K++NTLP IPFD K + PF+S RF+ Y++TSLE ++++ + E DLG+ IDLI+ TY
Sbjct: 1 MKFSNTLPPIPFDPKLLTNPFDSMRFVRYRTTSLETSHQHTLHAEPDLGIPIDLIDPSTY 60
Query: 101 APNYNIQLDPADEKLLEEDILTPQDSKRSRHHAR-----SVSWLRR-TEYIS-TEQTRFQ 153
L P D L++ + K+ + + R SVSWLRR TEYIS EQ+ +
Sbjct: 61 KATPGAALPPEDAVLIQVGAAETPEVKKKKANVREKPSTSVSWLRRHTEYISDYEQSTKK 120
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHYSKPNVTPVE 212
D +EA+VG + K ++D R+ V AI++ F +K +P+ H + P++ P+E
Sbjct: 121 VSRADSIEARVGHATLKRAEKDKRKRTREEVVDAIDQGFEAAKEIPV--HPTDPSLKPLE 178
Query: 213 IMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDE-------SGEQ 265
I+PV+PD W V FD+DP GRP QA+++G E + +
Sbjct: 179 ILPVFPDHDLWANSYTLVTFDADP---GRP-----RAQKQALLKGFSTEAEAEVGLAKQS 230
Query: 266 FVAYFLPTAETLD-----KRKL----DQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGY 316
FVAY +P + D K+K+ D+ + +E D + EY+ REY++ + + +
Sbjct: 231 FVAYLVPKNDGNDDEGKGKKKVGDEDDEGAAVEEVDGKTAEYEWVREYSF----RKDQQH 286
Query: 317 EENYFLIVRDDAVYYNELETRVRLSK 342
YF + D++V YNE++ ++ L K
Sbjct: 287 SATYFFVWDDESVRYNEIQAKIVLDK 312
>gi|395526010|ref|XP_003765168.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Sarcophilus harrisii]
Length = 211
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Query: 250 MSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVK 309
MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ ++Y + Y+YK+AREYNWNVK
Sbjct: 2 MSQAMIRGMMDEEGNQFVAYFLPVEETMRKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK 61
Query: 310 SKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATE 367
+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E
Sbjct: 62 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE 121
Query: 368 FRIQRLR 374
Q R
Sbjct: 122 LEAQEAR 128
>gi|341880894|gb|EGT36829.1| hypothetical protein CAEBREN_31200, partial [Caenorhabditis
brenneri]
Length = 287
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 156/267 (58%), Gaps = 19/267 (7%)
Query: 108 LDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFS 167
+D D+ LLE++ T KRS H++ V W+R+TEYISTE RF D+ E K+G++
Sbjct: 1 MDEKDQILLEDESATKMSMKRSAQHSKLVPWMRKTEYISTEFNRFGITA-DRQETKLGYN 59
Query: 168 IKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPC 227
+KKN + +++Y D+ SQ+ AI KTF D + P+++H++K + PVE ++PDFK+W+Y
Sbjct: 60 LKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVKEHHTKKGMKPVEECFIFPDFKHWQYLF 119
Query: 228 AQVIFDSDPAPVGRPIPAQIEEMSQAM---IRGVMDESGEQFVAYFLPTAETLDKRKLDQ 284
V FD D + IP EE QA I M+ +QF A F+PT E L +
Sbjct: 120 THVQFDGD--TITSDIPE--EEKKQAQESSIIKAMNVDDKQFAAVFVPTIECL----TNY 171
Query: 285 LSNLE----YTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRL 340
+ +LE Y +++YE+ ++REY+W ++ + + + RD Y+E+++ V++
Sbjct: 172 MDDLELERPYDPDRKYEFLLSREYDWKMEQVPPRD-RDAFVFYYRDGIFQYDEIDSNVKM 230
Query: 341 SKRRQKVGAAPNNTRLVVTHRPLNATE 367
++RR+ + ++++VT+R N E
Sbjct: 231 TRRRKMYMS--RKSKMMVTYREFNEEE 255
>gi|66825187|ref|XP_645948.1| RNA polymerase II-associated factor 1 [Dictyostelium discoideum
AX4]
gi|60474119|gb|EAL72056.1| RNA polymerase II-associated factor 1 [Dictyostelium discoideum
AX4]
Length = 499
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 179/348 (51%), Gaps = 53/348 (15%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
+ SE C++K+ N+LP+IPF+ KF+ + RF +YK+TSLER YK+ +LTE LG+ I
Sbjct: 108 KISEFQCKLKFQNSLPEIPFEPKFLKLSSDFQRFTQYKTTSLERQYKHPLLTEPQLGIPI 167
Query: 93 DLINKDTY-APNYNIQLDPADEKLLEEDILTPQDSKRSRHHAR---------SVSWLRRT 142
DLI+ Y P IQ+ P DE LL+ L+ QD + A +V WLRRT
Sbjct: 168 DLIDPSVYNTPKSPIQVPPGDEPLLKP--LSQQDLEEKNSSAIFKKKSEIRPNVGWLRRT 225
Query: 143 EYIST--EQTRFQPQVMDKVEAKV-----GFSIKKNFKEDNLYMDRDSQVKAIEKTF--- 192
EY+S E T +P ++ S N K+ +L ++ S +E TF
Sbjct: 226 EYLSKSDENTFGRPTKRISTSGELLTSSSSGSNTPNNKQLSLAQEQLSDSVLVENTFDIC 285
Query: 193 -ADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQI---- 247
+D + H + P++ PV ++ V+PDF W +V FDSD P+ +P +
Sbjct: 286 ASDYQF---VHPTNPSLKPVSVLQVFPDFDLWANSFTEVTFDSD--PLDHFLPKDLRSDK 340
Query: 248 ---------EEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEY 298
E ++A+++G+ D +FV YF+ T + + ++ ++ E D Q Y
Sbjct: 341 VQEYASRHNEVRNKAIVKGITD----KFV-YFI-TPDLKENYDVNNNNDFEIDDSQ---Y 391
Query: 299 KMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQK 346
KM + ++ + + +NYF +V++DAVYYN L+ RV L K + K
Sbjct: 392 KMQKVLTSDIITDAT---SQNYFFLVKNDAVYYNPLKNRVNLKKIKSK 436
>gi|281204907|gb|EFA79101.1| RNA polymerase II-associated factor 1 [Polysphondylium pallidum
PN500]
Length = 469
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 167/327 (51%), Gaps = 31/327 (9%)
Query: 39 CRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKD 98
C+++ +N L D PFD KF+ P + +F+ YK+TSLE+NYKY +LTE +LG+ I+LI+ +
Sbjct: 100 CQLRLSNKLADTPFDPKFLVIPSDFNKFVHYKTTSLEKNYKYPLLTEPNLGIPIELIDPE 159
Query: 99 TY-APNYNIQLDPADEKLLEEDILTPQDSKRSRHHAR--------SVSWLRRTEYISTEQ 149
Y P + + D+ LL L QD++ R +VSWLR+TEY+S+
Sbjct: 160 VYNIPKTKVAVPEEDQPLLRS--LDEQDAELRRAPINRGSALLRPAVSWLRKTEYLSSHD 217
Query: 150 TRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVT 209
+ V E+ S + +++ D + +E TF H + P++
Sbjct: 218 NQMGRPVKRASESNAPTSTQSPYQQQQQQDAAD--IVLVENTFDAINNTNFVHPTNPSLK 275
Query: 210 PVEIMPVYPDFKYWKYPCAQVIFDSDPAPV------GRPIPAQIEEMSQAMIR--GVMDE 261
PV I+PV+PDF W + +FD+DP + G I+E QA IR G++
Sbjct: 276 PVSILPVFPDFDLWANDYTETVFDADPLELPPDNMRGEKFHEYIQE--QAYIRSKGIIKG 333
Query: 262 SGEQFVAYFLPTAETLDK----RKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYE 317
++FV Y P DK + S + ++ ++ YKM + + ++ + E
Sbjct: 334 ITDKFVYYIAPKNRVEDKNNNNNNNNSSSLDDDLEDDQHPYKMYKVFTSDI----FQAQE 389
Query: 318 ENYFLIVRDDAVYYNELETRVRLSKRR 344
ENYF++++DD VYYN L T+V L + +
Sbjct: 390 ENYFMVIKDDGVYYNRLPTKVNLKRVK 416
>gi|449448058|ref|XP_004141783.1| PREDICTED: uncharacterized protein LOC101203806 [Cucumis sativus]
Length = 706
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 178/362 (49%), Gaps = 50/362 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K ++ E + Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 317 FLCKLKFRNELPDTSAQPKLMSLRKEKDHYTRYTITSLEKTYKPQLYVEPDLGIPLDLLD 376
Query: 97 KDTYAP-NYNIQLDPADEKLLEEDIL-TPQD-----SKRSRHHARSVSWLRRTEYI---- 145
Y P + + L P DE+LL +D+L TP ++ R + V+WL +T+YI
Sbjct: 377 LSVYNPSSVRMPLAPEDEELLRDDVLKTPVKKDGGIKRKERPTDKGVAWLVKTQYISPLS 436
Query: 146 --STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKH 202
S +Q+ + Q + E K G +I +N +R+ Q+K IE +F K PI H
Sbjct: 437 IESAKQSLTEKQAKELREMKGGRNILENLN------NRERQIKEIEASFEACKSRPI--H 488
Query: 203 YSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEM-----SQAMIRG 257
+ N+ PVE++P+ PDF + P V FDS P + + SQA+++
Sbjct: 489 ATNKNLYPVEVLPLLPDFDRYDDPFVVVAFDSAPTADSETFNKLDQSIRDAHESQAIMKS 548
Query: 258 VMDESG-----EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKS 312
M S E+F+AY +P+ D+LS Y ++++ Y REY+W+V+ +
Sbjct: 549 YMATSSDPSKPEKFLAYMVPSP--------DELSKDIYDEQEDVSYSWVREYHWDVRGDN 600
Query: 313 CKGYEENYFLIVRDDA-VYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRPLN 364
+ +L+ DDA Y L T++ L K+R K G + P R+ V RP
Sbjct: 601 VD--DPTTYLVSFDDAEARYVPLPTKLVLRKKRAKEGRSSDEVEHFPAPARVTVRRRPTV 658
Query: 365 AT 366
AT
Sbjct: 659 AT 660
>gi|449480786|ref|XP_004155995.1| PREDICTED: uncharacterized LOC101203806 [Cucumis sativus]
Length = 706
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 177/362 (48%), Gaps = 50/362 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K ++ E + Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 317 FLCKLKFRNELPDTSAQPKLMSLRKEKDHYTRYTITSLEKTYKPQLYVEPDLGIPLDLLD 376
Query: 97 KDTYAP-NYNIQLDPADEKLLEEDIL-TPQD-----SKRSRHHARSVSWLRRTEYI---- 145
Y P + + L P DE+LL +D+L TP ++ R + V+WL +T+YI
Sbjct: 377 LSVYNPSSVRMPLAPEDEELLRDDVLKTPVKKDGGIKRKERPTDKGVAWLVKTQYISPLS 436
Query: 146 --STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKH 202
S +Q+ + Q + E K G +I +N +R+ Q+K IE +F K PI H
Sbjct: 437 IESAKQSLTEKQAKELREMKGGRNILENLN------NRERQIKEIETSFEACKSRPI--H 488
Query: 203 YSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEM-----SQAMIRG 257
+ N+ PVE++P+ PDF + P V FDS P + + SQA+++
Sbjct: 489 ATNKNLYPVEVLPLLPDFDRYDDPFVVVAFDSAPTADSETFNKLDQSIRDAHESQAIMKS 548
Query: 258 VMDESG-----EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKS 312
M E+F+AY +P+ D+LS Y ++++ Y REY+W+V+ +
Sbjct: 549 YMATGSDPSKPEKFLAYMVPSP--------DELSKDIYDEQEDVSYSWVREYHWDVRGDN 600
Query: 313 CKGYEENYFLIVRDDA-VYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRPLN 364
+ +L+ DDA Y L T++ L K+R K G + P R+ V RP
Sbjct: 601 VD--DPTTYLVSFDDAEARYVPLPTKLVLRKKRAKEGRSSDEVEHFPAPARVTVRRRPTV 658
Query: 365 AT 366
AT
Sbjct: 659 AT 660
>gi|330792762|ref|XP_003284456.1| hypothetical protein DICPUDRAFT_52960 [Dictyostelium purpureum]
gi|325085599|gb|EGC39003.1| hypothetical protein DICPUDRAFT_52960 [Dictyostelium purpureum]
Length = 454
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 176/340 (51%), Gaps = 48/340 (14%)
Query: 35 SELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDL 94
SE C++K+ N+LP+IPF+ KF+ + RF +YK+TSLER YK+++LTE LG+ IDL
Sbjct: 75 SEFQCKLKFQNSLPEIPFEPKFLKIQSDFNRFTQYKTTSLERQYKHQLLTEPQLGIPIDL 134
Query: 95 INKDTY-APNYNIQLDPADEKLLEEDILTPQD------SKRSRHHARSVSWLRRTEYIST 147
I+ Y P I++ DE LL+ L+ QD +K+ +V WLRRTEY+S
Sbjct: 135 IDPSVYNTPKTPIRVPSRDEPLLKS--LSVQDLEEKSAAKKKSEIRPNVGWLRRTEYLSK 192
Query: 148 --EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQV---KAIEKTF---ADSKLPI 199
+ T +P V A + I + + M ++ +V +E TF A + + +
Sbjct: 193 ADDNTFGRPPVK---RASLPGDITNSPTNNKQLMIQEEKVSDSTLVENTFDICASNYVFV 249
Query: 200 EKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQI------------ 247
H + P++ P I+PV+PDF+ W +V FD+D P+ IP I
Sbjct: 250 --HPTNPSLKPTSILPVFPDFELWPNSFTEVAFDTD--PLDHYIPNNIRDDKVAEYASRH 305
Query: 248 -EEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNW 306
E ++A+++G+ D +FV + P + + ++ + EQ YKM +
Sbjct: 306 DEIRNKAVVKGITD----KFVYFITPNIKENNSNNNNE-DDFSLDGEQ---YKMQKVLTS 357
Query: 307 NVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQK 346
++ ++NYF +V+DD VYYN+L+ RV L K + K
Sbjct: 358 DIVPDQS---QQNYFFMVKDDCVYYNQLKNRVNLKKVKSK 394
>gi|255549826|ref|XP_002515964.1| conserved hypothetical protein [Ricinus communis]
gi|223544869|gb|EEF46384.1| conserved hypothetical protein [Ricinus communis]
Length = 672
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 168/338 (49%), Gaps = 44/338 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K + + RF +Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 274 FLCKLKFRNELPDPSAQPKLMTMKRDKDRFTKYTITSLEKMYKPQLFVEPDLGIPLDLLD 333
Query: 97 KDTY---APNYNIQLDPADEKLLEED-ILTPQDSK----RSRHHARSVSWLRRTEYI--- 145
Y + LDP DE+LL +D +TP + + R + VSWL +T+YI
Sbjct: 334 LSVYNRPPASERPPLDPEDEELLRDDEAVTPVKREGLKIKERPTDKGVSWLVKTQYISSL 393
Query: 146 ---STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKL-PIEK 201
ST+Q+ + Q + E K G ++ KN +R+SQ+K IE +F KL P+
Sbjct: 394 STDSTKQSMTEKQAKELRERKGGHNLLKNLN------NRESQIKEIEASFEACKLTPV-- 445
Query: 202 HYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP---VGRPIPAQIEE-------MS 251
H + N+ PVEI+P+ PDF ++ V FD+ P + + + + E M
Sbjct: 446 HATNKNLKPVEILPLIPDFDRYEDKFVTVAFDNAPTADSEIYSKLDSSVREACESRAVMK 505
Query: 252 QAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSK 311
+ G + E+F+AY P+ ++LS Y + ++ Y REY+W+V+
Sbjct: 506 ACVATGSDPANPEKFLAYMAPSP--------NELSKDMYDENEDISYNWVREYHWDVQGD 557
Query: 312 SCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVG 348
G + FL+ D DA Y L T++ L K+R + G
Sbjct: 558 G--GNDPTTFLVSFDEDAARYVPLPTKINLRKKRAREG 593
>gi|168014146|ref|XP_001759615.1| Paf1 complex protein [Physcomitrella patens subsp. patens]
gi|162689154|gb|EDQ75527.1| Paf1 complex protein [Physcomitrella patens subsp. patens]
Length = 588
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 162/298 (54%), Gaps = 38/298 (12%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R S +C++K+ N LPD K + + R+ Y+ TSLE+N+K+++ E DLG+ +
Sbjct: 210 RPSTFLCKIKFRNDLPDSTAQPKLMHINTDKDRYTRYQFTSLEKNWKHKLHVEPDLGIPL 269
Query: 93 DLINKDTYAP-NYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYIS 146
DL++ Y + ++ LDP D LL +D + +DS K+ R + V+WL +T+Y+S
Sbjct: 270 DLLDISNYKKIDASVPLDPEDAALLLDDEVKVKKDSSGIRKKDRPTDKGVAWLVKTQYVS 329
Query: 147 ------TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTF-ADSKLPI 199
+Q + Q D E + G I + + N DR Q++AIE++F A +LP
Sbjct: 330 PINLDPAKQAMTEKQAKDLREQREGRRI--DVEAGN---DRQQQIEAIEESFRAAKQLP- 383
Query: 200 EKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDP---APVGRPI--PAQIEEMSQAM 254
KH +KP + PVEI+P+ PDF+ ++FD+DP AP + A++E S+A+
Sbjct: 384 -KHLTKPELEPVEILPLLPDFERMGDQYVHMVFDTDPLTDAPGLTDLDQDARLEIESRAI 442
Query: 255 IRGVM----DESG-EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWN 307
++ DES E+F+ Y +P + LD+ N Y DE+E +Y REY+W+
Sbjct: 443 VKSFTIATSDESKPEKFIGYMVPKPDELDR-------NF-YDDEEEIQYTWVREYHWD 492
>gi|359482895|ref|XP_002278075.2| PREDICTED: RNA polymerase II-associated factor 1 homolog [Vitis
vinifera]
Length = 589
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 178/365 (48%), Gaps = 50/365 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K +A + RF +Y TSLE+ +K ++ E DLG+ +DL++
Sbjct: 194 FLCKLKFRNELPDPTAQPKLMALKTDKDRFTKYTITSLEKMHKPQLFVEPDLGIPLDLLD 253
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQD----SKRSRHHARSVSWLRRTEYI----- 145
Y P+ LDP DE+LL +D +TP K+ R + VSWL +T+YI
Sbjct: 254 LSVYNPPSVRRPLDPEDEELLRDDESVTPVKKEGIKKKERPTDKGVSWLVKTQYISPLST 313
Query: 146 -STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKL-PIEKHY 203
ST+Q+ + Q + E K G +I +NF R+ +++ IE FA SK+ P+ H
Sbjct: 314 ESTKQSLTEKQAKELRETKGGRNILENFNS------RERKIQNIEAAFAASKITPV--HS 365
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEM------SQAMIRG 257
+ ++ PVEI+P+ PDF + FDS P I +++++ SQA+++
Sbjct: 366 TNKSLKPVEILPLLPDFARYDDSFVVASFDSAPT-ADSEIYSKLDKTVRDSHESQAILKS 424
Query: 258 VMDESG-----EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKS 312
M E+F+AY P+ D+LS Y + ++ Y REY+W+V+
Sbjct: 425 YMATGSDPSKPEKFLAYMAPSP--------DELSKDIYDENEDTSYSWVREYHWDVRGDD 476
Query: 313 CKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRP-LN 364
Y + Y L T++ L K+R K G + P +++ V RP +
Sbjct: 477 ADD-PTTYLVSFNKTDARYLPLPTKLLLRKKRAKEGRSSDEVEHFPVPSKVTVRQRPNVA 535
Query: 365 ATEFR 369
A E +
Sbjct: 536 AIELK 540
>gi|302772835|ref|XP_002969835.1| hypothetical protein SELMODRAFT_441016 [Selaginella moellendorffii]
gi|300162346|gb|EFJ28959.1| hypothetical protein SELMODRAFT_441016 [Selaginella moellendorffii]
Length = 599
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 49/339 (14%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R S +C++K+ N LPD K + + R+ +Y TS+E+ +K+++ E DLG+ +
Sbjct: 196 RPSTFLCKIKFRNELPDPVSQPKLLRIYNDKDRYSKYSITSMEKTFKHKLYVEPDLGIPL 255
Query: 93 DLINKDTY-APNYNIQLDPADEKLLEED-ILTPQDSKRSRHHAR----SVSWLRRTEYIS 146
DL++ Y P LDPAD +LL +D + Q ++ +R R V+WL +T YIS
Sbjct: 256 DLLDLSVYNPPKTKAPLDPADAELLVDDEVGVKQKAELARRKERPTDKGVAWLVKTTYIS 315
Query: 147 TEQTRFQPQVMDKVEAKVGFSIKKNFKED-----NLYMDRDSQVKAIEKTFADSKL-PIE 200
P MD + + K +E DRD Q++AIE+TF SK+ P+
Sbjct: 316 -------PVSMDPAKQSLTEKQAKELREQKEGRKGPINDRDHQIQAIEETFRVSKMEPV- 367
Query: 201 KHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDP-------APVGRPIPAQIEEMSQA 253
H +KP + PVE++P+ PDF V+FD++P + + R +E S+A
Sbjct: 368 -HQTKPELKPVEVLPLLPDFSRCGDQFVHVVFDTEPTGDSELYSKLDRNTRDYLE--SRA 424
Query: 254 MIR--GVMDESG--EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVK 309
+++ + E G E+F+ Y +P KLD+ + D+ E Y REY W+V+
Sbjct: 425 VVKSYSLPKEDGKTEKFLGYMVP--------KLDEAHD----DDDEIPYTWIREYQWDVR 472
Query: 310 SKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
+ + NY DAV Y + +++ L K++ + G
Sbjct: 473 GEDARN---NYVFCFGKDAVQYLPISSKLILHKKKAREG 508
>gi|302806882|ref|XP_002985172.1| hypothetical protein SELMODRAFT_446192 [Selaginella moellendorffii]
gi|300147000|gb|EFJ13666.1| hypothetical protein SELMODRAFT_446192 [Selaginella moellendorffii]
Length = 601
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 49/339 (14%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R S +C++K+ N LPD K + + R+ +Y TS+E+ +K+++ E DLG+ +
Sbjct: 198 RPSTFLCKIKFRNELPDPVSQPKLLRIYNDKDRYSKYSITSMEKTFKHKLYVEPDLGIPL 257
Query: 93 DLINKDTY-APNYNIQLDPADEKLLEED-ILTPQDSKRSRHHAR----SVSWLRRTEYIS 146
DL++ Y P LDPAD +LL +D + Q ++ +R R V+WL +T YIS
Sbjct: 258 DLLDLSVYNPPKTKAPLDPADAELLVDDEVGVKQKAELARRKERPTDKGVAWLVKTTYIS 317
Query: 147 TEQTRFQPQVMDKVEAKVGFSIKKNFKED-----NLYMDRDSQVKAIEKTFADSKL-PIE 200
P MD + + K +E DRD Q++AIE+TF SK+ P+
Sbjct: 318 -------PVSMDPAKQSLTEKQAKELREQKEGRKGPINDRDHQIQAIEETFRVSKMEPV- 369
Query: 201 KHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDP-------APVGRPIPAQIEEMSQA 253
H +KP + PVE++P+ PDF V+FD++P + + R +E S+A
Sbjct: 370 -HQTKPELKPVEVLPLLPDFSRCGDQFVHVVFDTEPTGDSELYSKLDRNTRDYLE--SRA 426
Query: 254 MIR--GVMDESG--EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVK 309
+++ + E G E+F+ Y +P KLD+ + D+ E Y REY W+V+
Sbjct: 427 VVKSYSLPKEDGKTEKFLGYMVP--------KLDEAHD----DDDEIPYTWIREYQWDVR 474
Query: 310 SKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
+ + NY DAV Y + +++ L K++ + G
Sbjct: 475 GEDARN---NYVFCFGKDAVQYLPISSKLILHKKKAREG 510
>gi|357144952|ref|XP_003573471.1| PREDICTED: uncharacterized protein LOC100838919 [Brachypodium
distachyon]
Length = 614
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 162/335 (48%), Gaps = 40/335 (11%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 227 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRITSLEKNYMPKMIVPEDLGIPLDLLD 286
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYIS---- 146
Y P ++ P DE+LL +D +LTP K+ R + +SWL +T+YIS
Sbjct: 287 MSVYNPPAVQPRMAPEDEELLRDDEVLTPVKPEGIRKKERPTDKGMSWLVKTQYISPLST 346
Query: 147 --TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G + +N DR ++KAI ++F +K P+ H
Sbjct: 347 DAAKMSMTEKQAKERRESREGRDVLENLN------DRQKRIKAIAESFKSAKSRPV--HQ 398
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEE---MSQA 253
+KP + P ++P+ PDF + P V FD DP + R + + E M
Sbjct: 399 TKPGMEPEFVLPLVPDFDRYNNPFVMVNFDGDPTADSEQYNKLERSVRDECESRALMKSF 458
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
+ G E+F+AY P L K D++ +++Y+ REY+W V+
Sbjct: 459 QVSGSDPTKQEKFLAYMAPAPHELVKDLDDEIEDVQYS--------WIREYHWEVRGDD- 509
Query: 314 KGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
K Y + DD Y L T++ L K++ K G
Sbjct: 510 KNDPTTYLVAFDDDGAKYLPLPTKLVLQKKKAKEG 544
>gi|224070975|ref|XP_002303312.1| PAF1 complex component [Populus trichocarpa]
gi|222840744|gb|EEE78291.1| PAF1 complex component [Populus trichocarpa]
Length = 569
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 170/360 (47%), Gaps = 47/360 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K + E RF +Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 175 FMCKLKFRNELPDPSAQPKLMPLKREKDRFTKYTITSLEKMYKPQLYVEPDLGIPLDLLD 234
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQD----SKRSRHHARSVSWLRRTEYI---ST 147
Y P+ L P DE+LL +D +TP ++ R + VSWL +T+YI S
Sbjct: 235 LSVYNPPSVRPLLAPEDEELLHDDESVTPVKRDGIKRKERPTDKGVSWLVKTQYISPLSM 294
Query: 148 EQTRF---QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYS 204
E + + Q + E K G + N + R+ Q+K I+ +FA +KLP H +
Sbjct: 295 ESAKLSLTEKQAKELREMKGGCKLLDNLNK------RERQIKEIQASFASNKLP-PVHAT 347
Query: 205 KPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPA----------PVGRPIPAQIEEMSQAM 254
N+ PVEI+P+ PDF + V FD P P R M +
Sbjct: 348 NKNLKPVEILPLLPDFDRYGDKFVTVAFDGAPTADAENYRKFDPSDRDAYESWAIMKACV 407
Query: 255 IRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCK 314
G + E+F+AY +P+ D+LS Y + ++ Y REY+W+V+
Sbjct: 408 ASGSDPANPEKFLAYTVPSP--------DELSKDMYDENEDILYSWIREYHWDVRGDDVD 459
Query: 315 GYEENYFLIVRDDA-VYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRPLNAT 366
+ + FL+ D+A Y L T++ L K+R + G + P +R+ V R + AT
Sbjct: 460 --DPSTFLVSFDEAEARYLPLPTKISLRKKRAREGRSGDEIEHFPIPSRVTVRKRAVAAT 517
>gi|297743192|emb|CBI36059.3| unnamed protein product [Vitis vinifera]
Length = 420
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 180/365 (49%), Gaps = 50/365 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K +A + RF +Y TSLE+ +K ++ E DLG+ +DL++
Sbjct: 25 FLCKLKFRNELPDPTAQPKLMALKTDKDRFTKYTITSLEKMHKPQLFVEPDLGIPLDLLD 84
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQD----SKRSRHHARSVSWLRRTEYI----- 145
Y P+ LDP DE+LL +D +TP K+ R + VSWL +T+YI
Sbjct: 85 LSVYNPPSVRRPLDPEDEELLRDDESVTPVKKEGIKKKERPTDKGVSWLVKTQYISPLST 144
Query: 146 -STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKL-PIEKHY 203
ST+Q+ + Q + E K G +I +NF R+ +++ IE FA SK+ P+ H
Sbjct: 145 ESTKQSLTEKQAKELRETKGGRNILENFNS------RERKIQNIEAAFAASKITPV--HS 196
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEM------SQAMIRG 257
+ ++ PVEI+P+ PDF + FDS P I +++++ SQA+++
Sbjct: 197 TNKSLKPVEILPLLPDFARYDDSFVVASFDSAPT-ADSEIYSKLDKTVRDSHESQAILKS 255
Query: 258 VM----DESG-EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKS 312
M D S E+F+AY P+ D+LS Y + ++ Y REY+W+V+
Sbjct: 256 YMATGSDPSKPEKFLAYMAPSP--------DELSKDIYDENEDTSYSWVREYHWDVRGDD 307
Query: 313 CKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRP-LN 364
Y + Y L T++ L K+R K G + P +++ V RP +
Sbjct: 308 ADD-PTTYLVSFNKTDARYLPLPTKLLLRKKRAKEGRSSDEVEHFPVPSKVTVRQRPNVA 366
Query: 365 ATEFR 369
A E +
Sbjct: 367 AIELK 371
>gi|297839959|ref|XP_002887861.1| hypothetical protein ARALYDRAFT_477298 [Arabidopsis lyrata subsp.
lyrata]
gi|297333702|gb|EFH64120.1| hypothetical protein ARALYDRAFT_477298 [Arabidopsis lyrata subsp.
lyrata]
Length = 576
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 163/335 (48%), Gaps = 40/335 (11%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K + + +F +Y TSLE+ +K ++ E DLG+ +DL++
Sbjct: 180 FICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDLLD 239
Query: 97 KDTY-APNYNIQLDPADEKLL-EEDILTPQDS----KRSRHHARSVSWLRRTEYIST--- 147
Y P + L P DE+LL ++D +TP ++ R + VSWL +T+YIS+
Sbjct: 240 LSVYNPPKFKAPLAPEDEELLRDDDAITPIKKDGIRRKERPTDKGVSWLVKTQYISSINN 299
Query: 148 ---EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
Q+ + Q + E K G +I N +R+ Q+K IE +F K P+ H
Sbjct: 300 ESARQSLTEKQAKELREMKGGINILHNLN------NRERQIKDIEASFEACKSRPV--HA 351
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP----VGRPIPAQIEE------MSQA 253
+ ++ PVE++P+ P F + FDS P G+ P+ +E +
Sbjct: 352 TNKSLQPVEVLPLLPYFDRYDEQFVVANFDSAPTADSEFFGKLDPSIRDEHESRAILKSY 411
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
++ G + E+F+AY +P+ LD+LS + ++++ Y REY+W+V+
Sbjct: 412 VVAGSDTANPEKFLAYMVPS--------LDELSKDMHDEDEDISYTWVREYHWDVRGDDA 463
Query: 314 KGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
Y + D A Y L T++ L K+R + G
Sbjct: 464 NDI-GTYLVSFDDGAASYLPLPTKLNLRKKRPREG 497
>gi|413921265|gb|AFW61197.1| hypothetical protein ZEAMMB73_933462 [Zea mays]
Length = 453
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 165/337 (48%), Gaps = 42/337 (12%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ D+G+ +DL++
Sbjct: 64 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPEDIGIPLDLLD 123
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYIS---- 146
Y P+ + P DE+LL +D +LTP KR R + VSWL +T+YIS
Sbjct: 124 MSVYNPPDVQPPMAPEDEELLRDDQVLTPIKQEGTRKRERPTDKGVSWLVKTQYISPLSA 183
Query: 147 --TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G +N DNL DR+ Q+KAIE++F +K P+ H
Sbjct: 184 DAAKTSLTEKQAKERRESRGG----RNAFLDNLN-DREKQIKAIEESFRAAKSRPV--HQ 236
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEE---MSQA 253
+K + +MP+ PDF ++ P V FD DP + RP+ + E M
Sbjct: 237 TKRGMQAEWVMPLLPDFDRYEEPFVMVNFDGDPTADSEQYNKLERPVRDECESRAVMKSF 296
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
+ G E+F+AY P L R LD + + +Y REY+W V+
Sbjct: 297 SVSGSDPSKQEKFLAYMAPAPHEL-TRDLDD-------ENDDIQYSWLREYHWEVRGDDK 348
Query: 314 KGYEENYFLIVRD--DAVYYNELETRVRLSKRRQKVG 348
+ +L+ D D Y L T++ L K++ K G
Sbjct: 349 D--DPTTYLVTFDKKDGAKYLPLPTKLVLQKKKAKEG 383
>gi|307104472|gb|EFN52725.1| hypothetical protein CHLNCDRAFT_138263 [Chlorella variabilis]
Length = 470
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 154/331 (46%), Gaps = 25/331 (7%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R + +C +++ N LP+IP D K + P++ + +K T LER+ + +++ E DLG+ I
Sbjct: 32 RDTAFLCNIRFKNDLPEIPCDPKLLLPPYDRDQLAAFKLTELERDLRKDLMFEDDLGIPI 91
Query: 93 DLINKDTY-APNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQ-- 149
N + Y P L P D L+E D R R A +SWL RT+YI+ E
Sbjct: 92 HPWNIEQYSVPEVVPPLHPDDAALVESDEEAEPKKARLRGDAAELSWLLRTKYIAAEAGL 151
Query: 150 TRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVT 209
R A + ED R+ +++ IE F +K P+ H P+V
Sbjct: 152 KRGTGAPAKAAAAAATAAAAGAENEDP----REERIRQIEAQFVGAKAPL-AHGKDPSVV 206
Query: 210 PVEIMPVYPDFKYWKYPCAQVIFDSDP---APVGRPIPA-QIEEMSQAM-IRGVMDESGE 264
P+E+MPV+PD C FD+DP V +PA Q + QAM ++ +G
Sbjct: 207 PLEVMPVFPDSLMEGRSCVLATFDNDPLADVDVVERMPAEQRARVPQAMQLKSFKPATGP 266
Query: 265 QFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEY-KMAREYNWNVKSKSCKGYEEN---- 319
QFVA +P +KL + + E + ++AREY+W + + +E
Sbjct: 267 QFVALLVP-------KKLPEAGDDELSASGGIPGPQLAREYHWVREYQPHPRLDEKSTTY 319
Query: 320 YFLIVRDDAVYYNELETRVRLSKRRQKVGAA 350
F D V +++L TR+ L KR+++ A
Sbjct: 320 LFRFAGDGTVQFHDLNTRLELRKRKRQAAAG 350
>gi|326523545|dbj|BAJ92943.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 164/335 (48%), Gaps = 39/335 (11%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 239 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRVTSLEKNYMPKMIVPEDLGIPLDLLD 298
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYISTEQT 150
Y P+ L P D++LL +D +LTP K+ R + +SWL +T+YIS T
Sbjct: 299 MSVYNPPSVQRPLAPEDQELLRDDEVLTPVKPEGIRKKERPTDKGMSWLVKTQYISPLTT 358
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYM---DRDSQVKAIEKTFADSK-LPIEKHYSKP 206
+ + +AK G ++ DN+ DR ++KAI ++F +K P+ H +K
Sbjct: 359 DAAKMSITEKQAKEGRESREG--RDNVLENLNDRQKRIKAIAESFKAAKSRPV--HQTKR 414
Query: 207 NVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEEMSQAMIR--- 256
+ P ++P+ PDF + P V FD DP + R + + E SQA+++
Sbjct: 415 GMEPEFVLPLVPDFDRYNDPFVMVNFDGDPTADSEQYTKLERSVRDECE--SQALMKSFQ 472
Query: 257 --GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQE-YEYKMAREYNWNVKSKSC 313
G E+F+AY P L K ++ DE E ++Y REY+W V+
Sbjct: 473 VSGSDPAKQERFLAYMAPAPHELVK---------DFDDENEDFQYSWIREYHWEVRGDD- 522
Query: 314 KGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
K Y + DD Y L T++ L K++ K G
Sbjct: 523 KQDPTTYLVSFDDDDAKYLPLPTKLVLQKKKAKEG 557
>gi|326500378|dbj|BAK06278.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 617
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 168/338 (49%), Gaps = 45/338 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ +SLE+NY +++ DLG+ +DL++
Sbjct: 228 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRISSLEKNYLPKMIVPEDLGIPLDLLD 287
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYI---ST 147
Y PN + L P DE+LL +D +LTP K+ R + +SWL +T+YI ST
Sbjct: 288 MAVYNPPNVQLPLAPEDEELLRDDEVLTPVKPEGIRKKERPTDKGMSWLVKTQYISPLST 347
Query: 148 EQTRF---QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G + N E NL DR ++KAI ++F +K P+ H
Sbjct: 348 DAAKMWITEKQAKERRESREG---RDNVLE-NL-NDRQKRIKAIAESFKAAKSRPV--HQ 400
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEEMSQAMIR 256
+K + P ++P+ PDF + P V FD DP + R + + E SQA+++
Sbjct: 401 TKRGMEPEFVLPLVPDFDSYNDPFVMVNFDGDPTADSEQYNKLERSVHDECE--SQALMK 458
Query: 257 -----GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQE-YEYKMAREYNWNVKS 310
G E+F+AY P L K + DE E ++Y REY+W V+
Sbjct: 459 SFQVSGSDPAKQEKFLAYMAPAPHELVK---------DLDDENEDFQYSWIREYHWEVRG 509
Query: 311 KSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
K Y + DD Y L T++ L K++ K G
Sbjct: 510 DD-KQDPTTYLVSFDDDDAKYLPLPTKLVLQKKKAKEG 546
>gi|300681593|emb|CBI75547.1| Paf1 domain containing protein, expressed [Triticum aestivum]
Length = 453
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 162/340 (47%), Gaps = 49/340 (14%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 65 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRITSLEKNYMPKMIVPEDLGIPLDLLD 124
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYISTEQT 150
Y P+ + L P D++LL ED +LTP K+ R + +SWL +T+YIS
Sbjct: 125 MSVYNPPSVHRALAPEDQELLREDEVLTPVKPEGIRKKERPTDKGMSWLVKTQYIS---- 180
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKE-----DNLYM---DRDSQVKAIEKTFADSK-LPIEK 201
P D + + K +E DN+ DR ++KAI ++F +K P+
Sbjct: 181 ---PLTTDAAKMSITEKQAKERRESREGRDNVLENLNDRQKRIKAIAESFKAAKSRPV-- 235
Query: 202 HYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEEMSQAM 254
H +K + ++P+ PDF + P V FD DP + RP+ + E SQA+
Sbjct: 236 HQTKRGMEAEFVLPLVPDFDRYNDPFVMVNFDGDPTADSEQYTKLERPVRDECE--SQAL 293
Query: 255 IR-----GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQE-YEYKMAREYNWNV 308
++ G E+F+AY P L K + DE E ++Y REY+W V
Sbjct: 294 MKSFQVSGSDPAKQERFLAYMAPAPHELVK---------DLDDENEDFQYSWIREYHWEV 344
Query: 309 KSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
+ K Y + DD Y L T++ L K++ K G
Sbjct: 345 RGDD-KQDPTTYLVSFDDDDAKYLPLPTKLVLQKKKAKEG 383
>gi|242080621|ref|XP_002445079.1| hypothetical protein SORBIDRAFT_07g003820 [Sorghum bicolor]
gi|241941429|gb|EES14574.1| hypothetical protein SORBIDRAFT_07g003820 [Sorghum bicolor]
Length = 640
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 165/336 (49%), Gaps = 41/336 (12%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 251 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPDDLGIPLDLLD 310
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYIS---- 146
Y P+ ++ P DE+LL +D +LTP KR R + VSWL +T+YIS
Sbjct: 311 MSVYNPPDVQPRMAPEDEELLRDDEVLTPIKQEGIRKRERPTDQGVSWLVKTQYISPLST 370
Query: 147 --TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G +N DNL DR+ Q+KAIE++F +K P+ H
Sbjct: 371 DAAKMSLTEKQAKERRESREG----RNAFLDNLN-DREKQIKAIEESFKAAKSRPV--HQ 423
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEE---MSQA 253
+K + +MP+ PDF ++ P V FD DP + R + + E M
Sbjct: 424 TKRGMQAEWVMPLLPDFDRYEEPFVMVNFDGDPTADSEQYNKLERSVRDECESRAVMKSF 483
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
+ G E+F+AY P L + D+ + +Y REY+W+V+
Sbjct: 484 SVSGSDPTKQEKFLAYMAPAPHELTRDL---------DDDDDIQYSWLREYHWDVRGDD- 533
Query: 314 KGYEENYFLIV-RDDAVYYNELETRVRLSKRRQKVG 348
K Y + +++ Y L T++ L K++ K G
Sbjct: 534 KDDPTTYLVTFDKEEGAKYLPLPTKLVLQKKKAKEG 569
>gi|326496469|dbj|BAJ94696.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326530868|dbj|BAK01232.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 162/340 (47%), Gaps = 49/340 (14%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 239 FLCKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRVTSLEKNYMPKMIVPEDLGIPLDLLD 298
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYISTEQT 150
Y P+ L P D++LL +D +LTP K+ R + +SWL +T+YIS
Sbjct: 299 MSVYNPPSVQRPLAPEDQELLRDDEVLTPVKPEGIRKKERPTDKGMSWLVKTQYIS---- 354
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKE-----DNLYM---DRDSQVKAIEKTFADSK-LPIEK 201
P D + + K +E DN+ DR ++KAI ++F +K P+
Sbjct: 355 ---PLTTDAAKMSITEKQAKERRESREGRDNVLENLNDRQKRIKAIAESFKAAKSRPV-- 409
Query: 202 HYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEEMSQAM 254
H +K + P ++P+ PDF + P V FD DP + R + + E SQA+
Sbjct: 410 HQTKRGMEPEFVLPLVPDFDRYNDPFVMVNFDGDPTADSEQYTKLERSVRDECE--SQAL 467
Query: 255 IR-----GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQE-YEYKMAREYNWNV 308
++ G E+F+AY P L K ++ DE E ++Y REY+W V
Sbjct: 468 MKSFQVSGSDPAKQERFLAYMAPAPHELVK---------DFDDENEDFQYSWIREYHWEV 518
Query: 309 KSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
+ K Y + DD Y L T++ L K++ K G
Sbjct: 519 RGDD-KQDPTTYLVSFDDDDAKYLPLPTKLVLQKKKAKEG 557
>gi|7715600|gb|AAF68118.1|AC010793_13 F20B17.16 [Arabidopsis thaliana]
Length = 593
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 167/342 (48%), Gaps = 51/342 (14%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIA------YPFESTRFIEYKSTSLERNYKYEVLTEHDLGV 90
+C++K+ N LPD K + + F+ TRF +Y TSLE+ +K ++ E DLG+
Sbjct: 194 FICKLKFRNELPDPSAQLKLMTIKRDKDHYFDPTRFTKYTITSLEKLWKPKIFVEPDLGI 253
Query: 91 TIDLINKDTY-APNYNIQLDPADEKLL-EEDILTPQDS----KRSRHHARSVSWLRRTEY 144
+DL++ Y P L P DE+LL ++D +TP ++ R + +SWL +T+Y
Sbjct: 254 PLDLLDLSVYNPPKVKAPLAPEDEELLRDDDAVTPIKKDGIRRKERPTDKGMSWLVKTQY 313
Query: 145 IST------EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-L 197
IS+ Q+ + Q + E K G +I N +R+ Q+K IE +F K
Sbjct: 314 ISSINNESARQSLTEKQAKELREMKGGINILHNLN------NRERQIKDIEASFEACKSR 367
Query: 198 PIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV------GRPIP----AQI 247
P+ H + N+ PVE++P+ P F +Y V+ + D AP+ G+ P A
Sbjct: 368 PV--HATNKNLQPVEVLPLLPYFD--RYDEQFVVANFDGAPIADSEFFGKLDPSIRDAHE 423
Query: 248 EEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWN 307
+S + + + E+F+AY +P+ LD+LS + + +E Y REY W+
Sbjct: 424 SRVSYELPISMNTANPEKFLAYMVPS--------LDELSKDIHDENEEISYTWVREYLWD 475
Query: 308 VKSKSCKGYEENYFLIVRDDAVY-YNELETRVRLSKRRQKVG 348
V+ + + +L+ D+ Y L R+ L K+R + G
Sbjct: 476 VQPNAN---DPGTYLVSFDNGTASYLPLPMRLNLRKKRAREG 514
>gi|218200498|gb|EEC82925.1| hypothetical protein OsI_27878 [Oryza sativa Indica Group]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 162/335 (48%), Gaps = 39/335 (11%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 244 FLCKHKFRNELPDPSSQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPEDLGIPLDLLD 303
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYI---ST 147
Y P + P DE+LL +D +LTP K+ R + +SWL +T+YI ST
Sbjct: 304 MSVYNTPPVQPPMAPEDEELLRDDEVLTPVKKDGIRKKERPTDKGMSWLVKTQYISPLST 363
Query: 148 EQTRF---QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G + F E+ DR+ Q+KAIE +F +K P+ H
Sbjct: 364 DAAKMSITEKQAKERRESREG---RNTFLEN--INDREKQIKAIEDSFRAAKSRPV--HQ 416
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEE---MSQA 253
+K + ++P+ PDF + V FD DP + R + E M
Sbjct: 417 TKRGMEAEWVLPLLPDFDRYDDQFVMVNFDGDPTADSEQYNKLERSERDECESRAVMKSF 476
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
++ G E+F+AY +P+ L K D+ +++Y+ REY+W V+
Sbjct: 477 LVNGSDPAKQEKFLAYMVPSPHELSKDLDDETEDIQYS--------WLREYHWEVRGDD- 527
Query: 314 KGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
K Y + DD Y L T++ L K++ K G
Sbjct: 528 KDDPTTYLVTFDDDGAKYLPLPTKLVLQKKKAKEG 562
>gi|222639943|gb|EEE68075.1| hypothetical protein OsJ_26103 [Oryza sativa Japonica Group]
Length = 545
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 162/335 (48%), Gaps = 39/335 (11%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 156 FLCKHKFRNELPDPSSQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPEDLGIPLDLLD 215
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYI---ST 147
Y P + P DE+LL +D +LTP K+ R + +SWL +T+YI ST
Sbjct: 216 MSVYNTPPVQPPMAPEDEELLRDDEVLTPVKKDGIRKKERPTDKGMSWLVKTQYISPLST 275
Query: 148 EQTRF---QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G + F E+ DR+ Q+KAIE +F +K P+ H
Sbjct: 276 DAAKMSITEKQAKERRESREG---RNTFLEN--INDREKQIKAIEDSFRAAKSRPV--HQ 328
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEE---MSQA 253
+K + ++P+ PDF + V FD DP + R + E M
Sbjct: 329 TKRGMEAEWVLPLLPDFDRYDDQFVMVNFDGDPTADSEQYNKLERSERDECESRAVMKSF 388
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
++ G E+F+AY +P+ L K D+ +++Y+ REY+W V+
Sbjct: 389 LVNGSDPAKQEKFLAYMVPSPHELSKDLDDETEDIQYS--------WLREYHWEVRGDD- 439
Query: 314 KGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
K Y + DD Y L T++ L K++ K G
Sbjct: 440 KDDPTTYLVTFDDDGAKYLPLPTKLVLQKKKAKEG 474
>gi|328769977|gb|EGF80020.1| hypothetical protein BATDEDRAFT_25627 [Batrachochytrium
dendrobatidis JAM81]
Length = 404
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 189/400 (47%), Gaps = 79/400 (19%)
Query: 30 PAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDL- 88
P + + ++ Y NTLP+IPFD K + +PF R +Y SL + + V D
Sbjct: 4 PKKVLQDFAFKLSYRNTLPEIPFDPKLLEHPFPKDRHYKYTYNSLYASTPHLVYAADDEN 63
Query: 89 GVTIDLI------------NKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARS- 135
G+ ++L+ + PN + LDP D +LL + P D+K + +A +
Sbjct: 64 GLPLNLLAHGYLENAFRNPHAALLQPNPD-ALDPEDLELL----VPPVDAKLASDNAEAT 118
Query: 136 -----VSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDR--DSQVKAI 188
V WLRRTEY++ E + + VE K+G SIKK+ K + MDR ++Q+ AI
Sbjct: 119 RVRPVVPWLRRTEYVAVEGKTYGRRADTGVETKMGISIKKD-KHLSSLMDRSEEAQMLAI 177
Query: 189 EKTF---ADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDP---APVGRP 242
E TF A + L KH + P++ VEI P+YPDF++W V FD DP AP G
Sbjct: 178 ENTFETAAAATLSNLKHPTNPDLKLVEIFPIYPDFEFWPNLYQLVTFDDDPISRAPGGGA 237
Query: 243 IPAQIEE------MSQAMIRGVMD-ESGEQF-VAYFLPTAETL---------DKRKLDQL 285
A E + +A+I+ + + E F +A++ PT + K + Q
Sbjct: 238 TDADGTEYEHDLKLDRAIIKPIANPEDDTDFTMAFYTPTDASASAVREHRERQKHLMAQG 297
Query: 286 SNLEYTDE-QEYEYKMAREYNWNVKSKSCKGYEENYFLIV----RDDAVYYNELETRVRL 340
++E DE Q +EYK R+++ +V SKS NY + + +Y+ L R+ L
Sbjct: 298 HDIEDEDEDQSHEYKFRRDFDESV-SKS------NYPFCIELRKEEGGAFYSMLPKRMTL 350
Query: 341 SKRRQKVGAAPNN------------TRLVVTHRPLNATEF 368
K+R A N T+++V+HR L A E
Sbjct: 351 RKKR-----ALNKRERDYDVEYEKPTKILVSHRELTAEEI 385
>gi|22330753|ref|NP_178091.2| hydroxyproline-rich glycoprotein family protein [Arabidopsis
thaliana]
gi|332198171|gb|AEE36292.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis
thaliana]
Length = 589
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 165/338 (48%), Gaps = 47/338 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K + + +F +Y TSLE+ +K ++ E DLG+ +DL++
Sbjct: 194 FICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDLLD 253
Query: 97 KDTY-APNYNIQLDPADEKLL-EEDILTPQDS----KRSRHHARSVSWLRRTEYIST--- 147
Y P L P DE+LL ++D +TP ++ R + +SWL +T+YIS+
Sbjct: 254 LSVYNPPKVKAPLAPEDEELLRDDDAVTPIKKDGIRRKERPTDKGMSWLVKTQYISSINN 313
Query: 148 ---EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
Q+ + Q + E K G +I N +R+ Q+K IE +F K P+ H
Sbjct: 314 ESARQSLTEKQAKELREMKGGINILHNLN------NRERQIKDIEASFEACKSRPV--HA 365
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV------GRPIPAQIEE------MS 251
+ N+ PVE++P+ P F +Y V+ + D AP+ G+ P+ + +
Sbjct: 366 TNKNLQPVEVLPLLPYFD--RYDEQFVVANFDGAPIADSEFFGKLDPSIRDAHESRAILK 423
Query: 252 QAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSK 311
++ G + E+F+AY +P+ LD+LS + + +E Y REY W+V+
Sbjct: 424 SYVVAGSDTANPEKFLAYMVPS--------LDELSKDIHDENEEISYTWVREYLWDVQPN 475
Query: 312 SCKGYEENYFLIVRDDAVY-YNELETRVRLSKRRQKVG 348
+ + +L+ D+ Y L R+ L K+R + G
Sbjct: 476 AN---DPGTYLVSFDNGTASYLPLPMRLNLRKKRAREG 510
>gi|20147374|gb|AAM10397.1| At1g79730/F19K16_29 [Arabidopsis thaliana]
gi|27363416|gb|AAO11627.1| At1g79730/F19K16_29 [Arabidopsis thaliana]
Length = 589
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 165/338 (48%), Gaps = 47/338 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K + + +F +Y TSLE+ +K ++ E DLG+ +DL++
Sbjct: 194 FICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDLLD 253
Query: 97 KDTY-APNYNIQLDPADEKLL-EEDILTPQDS----KRSRHHARSVSWLRRTEYIST--- 147
Y P L P DE+LL ++D +TP ++ R + +SWL +T+YIS+
Sbjct: 254 LSVYNPPKVKAPLAPEDEELLRDDDAVTPIKKDGIRRKERPTDKGMSWLVKTQYISSINN 313
Query: 148 ---EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
Q+ + Q + E K G +I N +R+ Q+K IE +F K P+ H
Sbjct: 314 ESARQSLTEKQAKELREMKGGINILHNLN------NRERQIKDIEASFEACKSRPV--HA 365
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV------GRPIPAQIEE------MS 251
+ N+ PVE++P+ P F +Y V+ + D AP+ G+ P+ + +
Sbjct: 366 TNKNLQPVEVLPLLPYFD--RYDEQFVVANFDGAPIADSEFFGKLDPSIRDAHESRAILK 423
Query: 252 QAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSK 311
++ G + E+F+AY +P+ LD+LS + + +E Y REY W+V+
Sbjct: 424 SYVVAGSDTANPEKFLAYMVPS--------LDELSKDIHDENEEISYTWVREYLWDVQPN 475
Query: 312 SCKGYEENYFLIVRDDAVY-YNELETRVRLSKRRQKVG 348
+ + +L+ D+ Y L R+ L K+R + G
Sbjct: 476 AN---DPGTYLVSFDNGTASYLPLPMRLNLRKKRAREG 510
>gi|356522920|ref|XP_003530090.1| PREDICTED: uncharacterized protein LOC100800148 [Glycine max]
Length = 659
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 167/338 (49%), Gaps = 46/338 (13%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K +A + ++ +Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 265 FLCKLKFRNELPDPSAQPKLMASKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLD 324
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTP--QDS--KRSRHHARSVSWLRRTEYI----- 145
Y P+ L P D++LL +D +TP +D ++ R + V+WL +T+YI
Sbjct: 325 LSVYNPPSVRPPLAPEDKELLRDDEAVTPIKKDGIKRKERPTDKGVAWLVKTQYISPLSM 384
Query: 146 -STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKL-PIEKHY 203
ST+Q+ + Q + E K G I N R+ Q++ IE +F +K P+ H
Sbjct: 385 ESTKQSLTEKQAKELREMKGGRGILDNLNS------RERQIREIEASFEAAKSDPV--HA 436
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDP-------APVGRPIPAQIEEMSQAMIR 256
+ ++ PVE+MP+ PDF + FD+ P A + + + E S+A+++
Sbjct: 437 TNKDLYPVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMHAKMDKSVRDAFE--SKAVMK 494
Query: 257 GVMDESG-----EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSK 311
+ S E+F+AY +P +LS Y + ++ Y REY+W+V+
Sbjct: 495 SYVATSSDPANPEKFLAYMVPAP--------GELSKDIYDENEDVSYSWIREYHWDVRGD 546
Query: 312 SCKGYEENYFLIVRDDA-VYYNELETRVRLSKRRQKVG 348
+ FL+ D++ Y L T++ L K+R K G
Sbjct: 547 DAD--DPATFLVAFDESEARYLPLPTKLVLRKKRAKEG 582
>gi|115474865|ref|NP_001061029.1| Os08g0157100 [Oryza sativa Japonica Group]
gi|37805858|dbj|BAC99509.1| proline-rich protein-like [Oryza sativa Japonica Group]
gi|113622998|dbj|BAF22943.1| Os08g0157100 [Oryza sativa Japonica Group]
Length = 451
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 162/335 (48%), Gaps = 39/335 (11%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C+ K+ N LPD K++ + R+ +Y+ TSLE+NY +++ DLG+ +DL++
Sbjct: 62 FLCKHKFRNELPDPSSQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPEDLGIPLDLLD 121
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTPQDS----KRSRHHARSVSWLRRTEYI---ST 147
Y P + P DE+LL +D +LTP K+ R + +SWL +T+YI ST
Sbjct: 122 MSVYNTPPVQPPMAPEDEELLRDDEVLTPVKKDGIRKKERPTDKGMSWLVKTQYISPLST 181
Query: 148 EQTRF---QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEKHY 203
+ + + Q ++ E++ G + F E+ DR+ Q+KAIE +F +K P+ H
Sbjct: 182 DAAKMSITEKQAKERRESREG---RNTFLEN--INDREKQIKAIEDSFRAAKSRPV--HQ 234
Query: 204 SKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPAQIEE---MSQA 253
+K + ++P+ PDF + V FD DP + R + E M
Sbjct: 235 TKRGMEAEWVLPLLPDFDRYDDQFVMVNFDGDPTADSEQYNKLERSERDECESRAVMKSF 294
Query: 254 MIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSC 313
++ G E+F+AY +P+ L K D+ +++Y+ REY+W V+
Sbjct: 295 LVNGSDPAKQEKFLAYMVPSPHELSKDLDDETEDIQYS--------WLREYHWEVRGDD- 345
Query: 314 KGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
K Y + DD Y L T++ L K++ K G
Sbjct: 346 KDDPTTYLVTFDDDGAKYLPLPTKLVLQKKKAKEG 380
>gi|356526079|ref|XP_003531647.1| PREDICTED: uncharacterized protein LOC100797526 [Glycine max]
Length = 666
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 161/330 (48%), Gaps = 31/330 (9%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLIN 96
+C++K+ N LPD K +++ + ++ +Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 273 FLCKLKFRNELPDPSAQPKLMSFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLD 332
Query: 97 KDTY-APNYNIQLDPADEKLLEED-ILTP--QDS--KRSRHHARSVSWLRRTEYISTEQT 150
Y P L P DE+LL +D TP +D ++ R + V+WL +T+YIS
Sbjct: 333 LSVYNPPRVRPPLAPEDEELLRDDEAATPIKKDGIKRKERPTDKGVAWLVKTQYISPLSM 392
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKL-PIEKHYSKPNVT 209
Q + + +AK +K DNL R+ Q++ I+ +F +K P+ H + ++
Sbjct: 393 ESTKQSLTEKQAKELREMKGRGILDNL-NSRERQIREIQASFEAAKSDPV--HATNKDLY 449
Query: 210 PVEIMPVYPDFKYWKYPCAQVIFDSDP-------APVGRPIPAQIEE---MSQAMIRGVM 259
PVE+MP+ PDF + FD+ P A + + + E M + G+
Sbjct: 450 PVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMYAKMNKSVRDAFESKAVMKSYVATGLD 509
Query: 260 DESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 319
+ E+F+AY P +LS Y + ++ Y REY+W+V+ +
Sbjct: 510 PANPEKFLAYMAPAP--------GELSKDIYDENEDVSYSWIREYHWDVRGDDAD--DPT 559
Query: 320 YFLIVRDDA-VYYNELETRVRLSKRRQKVG 348
FL+ D++ Y L T++ L K+R K G
Sbjct: 560 TFLVAFDESEARYLPLPTKLVLRKKRAKEG 589
>gi|325181082|emb|CCA15494.1| RNA polymerase IIassociated factor 1 putative [Albugo laibachii
Nc14]
Length = 525
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 165/351 (47%), Gaps = 52/351 (14%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
++SE + +++ N LPDIPFD KF+ YP ES R I++K +LE++Y +E+ E +LG++I
Sbjct: 117 KQSEFLANLEFRNKLPDIPFDTKFLQYPHESDRLIKWKPNTLEQDYVFEIHEEPNLGLSI 176
Query: 93 DLINKDTY-APNYNIQLDPADEKLLEEDILTPQDSKRSRHHAR-SVSWLRRTEYISTE-- 148
DLI+ Y P L+ DE +L ++ SK ++ AR VSWLRRTEY+ +
Sbjct: 177 DLIDPAKYEVPTVTEPLEAGDEAVL---MMKETQSKDTKSKARPVVSWLRRTEYMGNDLY 233
Query: 149 --------QTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLP-I 199
+ FQ ++ + E + ++ K+ E +F D P +
Sbjct: 234 EPVHKFKSEVEFQSELREGTENALAEEVQVTLKQ------------RAEDSFKDVNDPEV 281
Query: 200 EKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPA--PVGRPIPAQIEEMSQAMIRG 257
H K N+ P +I VYPD + A + +D P+ G+ IP + S+A++ G
Sbjct: 282 LVHPFKKNLKPAKIWDVYPDQSLYPNKYAHLSYDVLPSMDDKGKSIP---QRESRALLCG 338
Query: 258 VMDES-GEQFV--AYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCK 314
V +S G + + LP + Q N + ++Y Y REY +V+ K
Sbjct: 339 VSRKSEGSDHIQGSILLPVSA--------QAENPDAEVGEKYGY--FREYLLSVQQLDNK 388
Query: 315 GYEEN----YFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHR 361
G E++ + L Y EL R++L ++ K R + HR
Sbjct: 389 GKEDSQNRLFMLDPESQEFTYCELLHRIQL--KKTKFTGEDQRRRGAIVHR 437
>gi|12324582|gb|AAG52243.1|AC011717_11 unknown protein; 100211-103437 [Arabidopsis thaliana]
Length = 547
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 151/304 (49%), Gaps = 49/304 (16%)
Query: 37 LVCRVKYNNTLPDIPFDCKFIA------YPFESTRFIEYKSTSLERNYKYEVLTEHDLGV 90
+C++K+ N LPD K + + F+ TRF +Y TSLE+ +K ++ E DLG+
Sbjct: 194 FICKLKFRNELPDPSAQLKLMTIKRDKDHYFDPTRFTKYTITSLEKLWKPKIFVEPDLGI 253
Query: 91 TIDLINKDTY-APNYNIQLDPADEKLL-EEDILTPQDS----KRSRHHARSVSWLRRTEY 144
+DL++ Y P L P DE+LL ++D +TP ++ R + +SWL +T+Y
Sbjct: 254 PLDLLDLSVYNPPKVKAPLAPEDEELLRDDDAVTPIKKDGIRRKERPTDKGMSWLVKTQY 313
Query: 145 IST------EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-L 197
IS+ Q+ + Q + E K G +I N +R+ Q+K IE +F K
Sbjct: 314 ISSINNESARQSLTEKQAKELREMKGGINILHNLN------NRERQIKDIEASFEACKSR 367
Query: 198 PIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV------GRPIPAQIEE-- 249
P+ H + N+ PVE++P+ P F +Y V+ + D AP+ G+ P+ +
Sbjct: 368 PV--HATNKNLQPVEVLPLLPYFD--RYDEQFVVANFDGAPIADSEFFGKLDPSIRDAHE 423
Query: 250 ----MSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYN 305
+ ++ G + E+F+AY +P+ LD+LS + + +E Y REY
Sbjct: 424 SRAILKSYVVAGSDTANPEKFLAYMVPS--------LDELSKDIHDENEEISYTWVREYL 475
Query: 306 WNVK 309
W+V+
Sbjct: 476 WDVQ 479
>gi|428183424|gb|EKX52282.1| hypothetical protein GUITHDRAFT_102185 [Guillardia theta CCMP2712]
Length = 498
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 200/434 (46%), Gaps = 50/434 (11%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R + ++K+ N LP++PF+ KF+A + + Y TSLE+N+KY +LTE +LG+ I
Sbjct: 43 RADTFISKMKFRNDLPELPFEPKFLASQMDVKKLTSYSFTSLEKNFKYSLLTEPNLGIHI 102
Query: 93 DLINKDTYAPNYN-IQLDPADEKLLE-EDILTPQDSKRSRHHAR-SVSWLRRTEYISTEQ 149
DLI +TY P N L P D+ LLE E + T + + R R +V WL +T Y E
Sbjct: 103 DLIEPETYEPPSNGAPLLPEDKYLLEGEKVETNRSNLRINIKERPNVPWLHKTAYYGNED 162
Query: 150 TRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADS-KLPIEKHYSKPNV 208
+ Q K + ++ I+++ +E + + IEK+F S KL KH + P++
Sbjct: 163 L-YDYQQGHKPQVQLPVPIQEDVQE----LTPKQLAEKIEKSFELSRKLEDLKHPTNPDL 217
Query: 209 TPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGV--------MD 260
++ + PD K W +++FD DP + P A +A + M
Sbjct: 218 VATKVWEILPDTKCWPNDYTELVFDQDPT-LDDPKAANTSMADRATLASTAFINIGRSMQ 276
Query: 261 ESGEQFVAYFLPTAETLDKRKLDQL----------SNLEYTDEQEYEYKMAREYNWNVKS 310
+ ++ AY LP E+ ++K+ ++ E DE+ E+ REY N
Sbjct: 277 HANDRTFAYMLPAPESKRRKKMAKVECERGDDADDEMDEDEDEKVTEFNCLREYCENEAR 336
Query: 311 KSCKGYEENYFLIV-------RDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH--- 360
+ + +++F++ +Y+ L R L KR+ ++TH
Sbjct: 337 MYQEEWHDDHFVVAFVEKTGENSGCAFYHPLHNRTYLRKRKD-----------ILTHSAI 385
Query: 361 RPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEG-EGGERE 419
L+ + +RL+ERF + EEE+EA + ++ + +G + ERE
Sbjct: 386 MDLDGPDRISRRLKERFPSYLKAVQTLRKLSEEEQEALKQKRIDLGRESLADGNQEAERE 445
Query: 420 GGGEGENDNEKRTS 433
GE + +++ +++
Sbjct: 446 KRGESQQNDDSQST 459
>gi|384252480|gb|EIE25956.1| hypothetical protein COCSUDRAFT_64915 [Coccomyxa subellipsoidea
C-169]
Length = 385
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 29/327 (8%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R + V V++ +LP++P D K + + + ++ T+LE+ + +++ E +G+ +
Sbjct: 26 RNTPFVSNVRFRTSLPEVPCDPKMLVAVLQPDKLSQFNITTLEQEMRQDLILESGVGIPL 85
Query: 93 DLINKDTYA-PNYNIQLDPADEKLL-----EEDILTPQDSKRSRHHARSVSWLRRTEYIS 146
L++ YA P+ L P D L+ EE + +R R +SWL RT YI+
Sbjct: 86 SLLDTQRYAVPDIAQPLAPEDAALVMGPTTEEGPGATKRRERLRGEGTELSWLMRTTYIA 145
Query: 147 TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKP 206
+ + Q + K G + ED +DRD+Q+ AIE TF +++ P H P
Sbjct: 146 NDMEERRQQ---RSAEKSGVAA----TEDE-AIDRDAQIAAIEATFEEARAP-PTHIRDP 196
Query: 207 NVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP----VGRPIPAQIEEMSQAMIRGVM--- 259
++TPVEIMPV PD ++ FD +P + P ++ +++ I
Sbjct: 197 SLTPVEIMPVLPDLDRLGNIYVRMAFDGEPTADHDRLASLPPDSVKRLAEHAIMKSFTLN 256
Query: 260 -DESG--EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGY 316
D+ G ++FVAY LP + + +R D+ S+ E Y+ REYN+ V +
Sbjct: 257 SDQHGKEQRFVAYLLPEEDPV-QRNADEPSSSRDDAEDHISYEWIREYNYKVHNDEDHST 315
Query: 317 EENYFLIVRDDAVYYNELETRVRLSKR 343
YF R V + +L+T++ L KR
Sbjct: 316 FWFYFDKGR---VTFTDLDTKLSLFKR 339
>gi|298711177|emb|CBJ32401.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 509
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 33/231 (14%)
Query: 29 RPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDL 88
R ++++E +C +K+ N+LPD P F+ P + +++YK T+LE +YK+++ E DL
Sbjct: 16 RKWQKQTEFLCTIKFRNSLPDPPLGPHFLDVPLDLQSYVKYKPTTLESDYKWKLHYERDL 75
Query: 89 GVTIDLINKDTY-APNYNIQLDPADEKLL------------EEDILTPQDSKRSRHHARS 135
GV ID+I+ Y P + L P DE LL +ED+ T S R + S
Sbjct: 76 GVPIDVIDPRNYLLPKKAVPLPPEDEALLNWREGDGPGSVKKEDLST---SARRKTVDTS 132
Query: 136 VSWLRRTEYIS------TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIE 189
V+WL++T Y++ Q + + Q E ++ I + K+D + IE
Sbjct: 133 VTWLKKTVYLTNDPFDPVHQFKSEQQTQADKEVELEKEIARGKKQDRKML--------IE 184
Query: 190 KTF--ADSKLP-IEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPA 237
++F A+S P + + SK ++T +MPV PD W V+FD DPA
Sbjct: 185 ESFLHANSNKPLVHQDASKRHLTAEWVMPVMPDVSLWPNTYTTVMFDKDPA 235
>gi|301117418|ref|XP_002906437.1| RNA polymerase II-associated factor 1 [Phytophthora infestans
T30-4]
gi|262107786|gb|EEY65838.1| RNA polymerase II-associated factor 1 [Phytophthora infestans
T30-4]
Length = 509
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 171/343 (49%), Gaps = 38/343 (11%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
++SE + +++ NTLPDIPFD KF+ YP E R I+YK +LE +Y YE+ E +LG+TI
Sbjct: 92 KQSEFLATLEFRNTLPDIPFDTKFVKYPHEPERLIKYKPNTLEMDYTYEIHEEPNLGLTI 151
Query: 93 DLINKDTY-APNYNIQLDPADEK--LLEEDILTPQDSKRSRHHAR-SVSWLRRTEYISTE 148
DLI+ Y AP L+ DE+ +++ED + R AR +VSWLRRTEY+ +
Sbjct: 152 DLIDPTKYEAPLEPEPLEVGDEQTLMMKED----HAGNKGRSKARPTVSWLRRTEYMGND 207
Query: 149 QTRFQPQVMDKVEAKVGFSIK---KNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSK 205
+ K EA++ +++ +N + + + + + +A DSKL + H +
Sbjct: 208 L--YDSVHKFKSEAEIQSALREGTENALAEVVSVTLEDRAEASFHDINDSKLLVHPHNKR 265
Query: 206 PNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPA--PVGRPIPAQIEEMSQAMIRGVMD--E 261
+ +++ V+PD A + +D P+ + I ++ E +A++ GV +
Sbjct: 266 KKI--IKVWDVFPDQILSANKYAILSYDMLPSEDVKSKGITSREE---RALLCGVNKKIQ 320
Query: 262 SGEQFV--AYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 319
+G + + + LP A T ++ E D +++ Y REY +V S + +
Sbjct: 321 AGNELIQGSILLPNASTEEE---------ESNDREKFSY--LREYLMSVDSLDSRESQHI 369
Query: 320 YFLI-VRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHR 361
F++ + Y+++ R++L R+ K+ V HR
Sbjct: 370 VFMLDPESNQFTYSDVLNRIQL--RKTKMSGEEKRRHGAVVHR 410
>gi|224054406|ref|XP_002298244.1| PAF1 complex component [Populus trichocarpa]
gi|222845502|gb|EEE83049.1| PAF1 complex component [Populus trichocarpa]
Length = 691
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 58/334 (17%)
Query: 38 VCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINK 97
VCR + N LPD K + + R+ +Y TSLE+ YK ++ E DLG+ +DL++
Sbjct: 315 VCR--FRNELPDPSAQPKLMPLKRDKDRYTKYTITSLEKMYKPQLYVEPDLGIPLDLLDL 372
Query: 98 DTY-APNYNIQLDPADEKLLEED-ILTPQD----SKRSRHHARSVSWLRRTEYISTEQTR 151
Y P+ L P DE+LL +D + P ++ R + VSWL +
Sbjct: 373 SVYNPPSIRPPLAPEDEELLRDDETVAPVKRDGIRRKERPTDKGVSWLSLNKN------- 425
Query: 152 FQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPV 211
Q + E K G ++ N +R+ Q+K I+ +F +KLP H + N+ P+
Sbjct: 426 ---QAKELREMKGGRNLLDNLN------NRERQIKEIQASFEANKLP-PVHATNKNLHPI 475
Query: 212 EIMPVYPDFKYWKYPCAQVIFDSDP----------------APVGRPIPAQIEEMSQAMI 255
E++P+ PDF ++ FD P A R I M +
Sbjct: 476 EVLPLLPDFDRYEDKFVTATFDGAPTVDAENYNKFDSSDREAYESRAI------MKACVA 529
Query: 256 RGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKG 315
G + E+F+AY +P+ D++S + + ++ Y R Y+W+++
Sbjct: 530 TGSDPTNPEKFLAYMVPSP--------DEMSKDMHDESEDISYSWIRGYHWDIRGDDAN- 580
Query: 316 YEENYFLIVRDDA-VYYNELETRVRLSKRRQKVG 348
+ FL+ D+A Y L T++ L+KRR + G
Sbjct: 581 -DPTTFLVSFDEAEARYLPLPTKINLTKRRAREG 613
>gi|348688394|gb|EGZ28208.1| hypothetical protein PHYSODRAFT_551925 [Phytophthora sojae]
Length = 511
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 168/342 (49%), Gaps = 35/342 (10%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFEST-RFIEYKSTSLERNYKYEVLTEHDLGVT 91
++SE + +++ NTLPDIPFD KF+ YP E R I+YK +LE +Y YE+ E +LG+T
Sbjct: 92 KQSEFLANLEFRNTLPDIPFDTKFVKYPHEPERRLIKYKPNTLEMDYTYEIHEEPNLGLT 151
Query: 92 IDLINKDTY-APNYNIQLDPADEKLLEEDILTPQDSKRSRHHAR---SVSWLRRTEYIST 147
IDLI+ Y AP L+ DE++L + +D ++ ++ +VSWLRRTEY+
Sbjct: 152 IDLIDPAKYEAPAEPEPLEVGDEQVL----MMKEDHANTKGRSKVRPTVSWLRRTEYMGN 207
Query: 148 EQTRFQPQVMDKVEAKVGFSIK---KNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYS 204
+ + K EA++ +++ +N + + + + + +A + D KL + H
Sbjct: 208 DL--YDSVHKFKSEAEIQSALREGTENALAEVVSVTLEDRAEASFRDINDPKLLVHPHNK 265
Query: 205 KPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMD--ES 262
K + ++ V+PD A + +D P+ + E +A++ GV ++
Sbjct: 266 KKKIA--KVWDVFPDQHLSANKYAILSYDILPSEDVKNKGITNRE-DRALLCGVNKKIQA 322
Query: 263 GEQFV--AYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENY 320
G + + + LP A T D+ E D +++ Y REY +V+S + +
Sbjct: 323 GNEHIQGSILLPNASTEDE---------ESNDREKFSY--LREYLMSVESLDSRESQHVV 371
Query: 321 FLI-VRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHR 361
F++ + Y+++ R++L R+ K+ V HR
Sbjct: 372 FMLDPESNQFTYSDVLNRIQL--RKTKMSGEEKRRHGAVVHR 411
>gi|452820231|gb|EME27276.1| hypothetical protein Gasu_51340 [Galdieria sulphuraria]
Length = 406
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 171/364 (46%), Gaps = 36/364 (9%)
Query: 14 SEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTS 73
S +RT ++ +T PP S +C+ +Y N LP+ PF K E++++ +Y+ +S
Sbjct: 33 SSRRTATSGTTEKPP------SVFLCKPRYMNNLPEPPFLPKMYNLEVETSQYAKYRISS 86
Query: 74 LERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHA 133
LE +YK ++ T LG+ +D + + + A+E EE + ++S+ S+
Sbjct: 87 LESSYKPKLETGPALGIWVDWVTPEEEQQLGEGEPLTAEE---EEILAQVENSQESKRKF 143
Query: 134 RSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTF- 192
SW+RRT Y + R + + S+K+ + S + I+ F
Sbjct: 144 SVPSWMRRTGYDEFSELRANKNISQYPNSDGSSSLKQ----------QRSLSETIQDEFE 193
Query: 193 ADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP-------VGRPIPA 245
A ++P+ K ++ PV+++PV+PDF+ W + FDS+P+ R +
Sbjct: 194 AAKQVPVHPDPRKRHLKPVQVLPVFPDFENWPDKFVVLQFDSNPSEEIESHQDTQRIVEE 253
Query: 246 QIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYN 305
IE A+ ++SGE+F++Y++PT T++ RK + +Y++ REY
Sbjct: 254 FIE---NALTVAFTNQSGERFLSYYIPTENTIENRKSQHWEETMKKNNTIEDYELLREYT 310
Query: 306 WNVKSKSCKGYEENYFLIVRDDAVY-YNELETRVRLSKR-RQKVGAAPNNTRLVVTHRPL 363
+ + + F+ ++DD V Y + +++ L +R R++ + P L V RP
Sbjct: 311 FVTRPEEGN----RSFVFLQDDQVVRYFPVTSKLFLYRRIRRQETSQPGQPILWVHRRPF 366
Query: 364 NATE 367
E
Sbjct: 367 TEKE 370
>gi|303274140|ref|XP_003056393.1| PAF1 complex protein [Micromonas pusilla CCMP1545]
gi|226462477|gb|EEH59769.1| PAF1 complex protein [Micromonas pusilla CCMP1545]
Length = 365
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 153/347 (44%), Gaps = 54/347 (15%)
Query: 28 PRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHD 87
P +R + +C ++ N LP +P D KF+ P +Y SL + VL D
Sbjct: 6 PNKLKRETAFLCPAEFRNDLPLVPSDWKFLHRPNLCESISDYHHVSLIGEARDAVLPA-D 64
Query: 88 LGVTIDLINKDTY-APNYNIQLDPADEKLLEE--DILTPQDSKRSRHHARSVS---WLRR 141
LG+T+D + +Y + L+ D KLLEE D D+ + R+ +S WL
Sbjct: 65 LGLTVDPLLSSSYREKQFRPPLEHVDNKLLEEEKDREMVADNHKIRNKRPDMSKALWLMN 124
Query: 142 TEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDS--------QVKAIEKTFA 193
T+YIS+ P+ + + E K++ + D+D+ Q+K+I+++F
Sbjct: 125 TQYISSMPL---PEHLGRSE--------KDWAKHKQIRDQDAAPNDSHIQQIKSIDRSFT 173
Query: 194 DSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQ-IEEMSQ 252
K + K S+ +V P+ +PV PDF + I+D DP+ RP + M
Sbjct: 174 AVKHRLSKDSSQ-DVFPIMELPVLPDFAHSSSSFVHFIYDEDPSDDARPENGSCLTRMHT 232
Query: 253 AM------------IRGVMDESGEQFVAYFLPTAETLD----KRKLDQLSNLEYTDEQEY 296
A+ +RG D E+ VA LP+ D K LD+L+ EY +EY
Sbjct: 233 ALENSFVKPYSVNCLRG--DTGAEKLVALMLPSLSNHDTGARKVNLDKLNYEEYNWIREY 290
Query: 297 EYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKR 343
+Y++ RE N C F ++ Y EL R+ LSKR
Sbjct: 291 QYRLHRERA-NSHKSMC-------FFFDKEHNTRYMELSARILLSKR 329
>gi|159477665|ref|XP_001696929.1| Paf1 complex component [Chlamydomonas reinhardtii]
gi|158274841|gb|EDP00621.1| Paf1 complex component [Chlamydomonas reinhardtii]
Length = 502
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 153/353 (43%), Gaps = 67/353 (18%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTI 92
R + + +++ N LP+IP D K + + + T+LER + ++LT + +TI
Sbjct: 102 RDTPFLAHIRFRNDLPEIPSDPKMLVSQIQPEVLSRFGLTALERQARRDLLTPPN--ITI 159
Query: 93 DLINKDTY-APNYNIQLDPADEKLLEED----------ILTPQDSKRSRHHARS------ 135
++ Y P+ + +DPAD LL++D + D + ARS
Sbjct: 160 SPLDVQRYQVPDQAVPMDPADAALLKDDARPLAIGGSPLPAAADGRHKSFAARSKDVDVT 219
Query: 136 -VSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFK-----------------EDNL 177
VSWL RT YIS R AK G K+ + +D
Sbjct: 220 KVSWLMRTTYISASDNRG--------AAKQGLPEKQVLQARAAERRLAAVAAGTDLDDRE 271
Query: 178 YMDRDSQVKAIEKTFADSKL-PIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIF-DSD 235
DR++QV+AIE +F ++ P+ H P + PVE++PV PD W++ F DSD
Sbjct: 272 LNDREAQVRAIEASFEAARAQPV--HSRNPALKPVEVLPVLPDPTAWQHKLLLTTFHDSD 329
Query: 236 PAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETL------DKRKLDQLSNLE 289
P G + A + + + A + + + V ++L T R+L ++ L
Sbjct: 330 P---GEELAAVVGQEAMAGLPSA--KRPQLLVGHYLLKGFTHHISKAGQDRELKIMALLP 384
Query: 290 YTDEQEYE--YKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRL 340
++ E Y+ ++YN+ +K + +Y L + DA + ++ ++ L
Sbjct: 385 VLQPEDLEGDYQWTKDYNYELKRDTV-----HYALRLDKDAARFYRMQGKLEL 432
>gi|297839961|ref|XP_002887862.1| hypothetical protein ARALYDRAFT_340237 [Arabidopsis lyrata subsp.
lyrata]
gi|297333703|gb|EFH64121.1| hypothetical protein ARALYDRAFT_340237 [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 21/199 (10%)
Query: 35 SELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDL 94
+ +C++K+ N LPD K + + +F +Y TSLE+ +K ++ E DLG+ +DL
Sbjct: 88 TTFICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDL 147
Query: 95 INKDTY-APNYNIQLDPADEKLL-EEDILTPQDS----KRSRHHARSVSWLRRTEYIST- 147
++ Y P + L P DE+LL ++D +TP ++ R + VSWL +T+YIS+
Sbjct: 148 LDLSVYNPPKFKAPLAPEDEELLRDDDAITPIKKDGIRRKERPTDKGVSWLVKTQYISSI 207
Query: 148 -----EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK-LPIEK 201
Q+ + Q + E K G +I N +R+ Q+K IE +F K P+
Sbjct: 208 NNESARQSLTEKQAKELREMKGGINILHNLN------NRERQIKDIEASFEACKSRPV-- 259
Query: 202 HYSKPNVTPVEIMPVYPDF 220
H + ++ PVE++P+ P F
Sbjct: 260 HATNKSLQPVEVLPLLPYF 278
>gi|384491871|gb|EIE83067.1| hypothetical protein RO3G_07772 [Rhizopus delemar RA 99-880]
Length = 360
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 39/297 (13%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
R++ +CRV+Y NTLP IPF K + P R I Y+S SL Y + + + D
Sbjct: 8 RTDYICRVRYRNTLPSIPFAPKMLTIPSLIERHIPYQSNSLIEQTPYSLAMDQSAAIPFD 67
Query: 94 --LIN-KDTYAPNYNIQLDPADEKLLEEDILT--PQDSKRSRHHAR---SVSWLRRTEYI 145
L++ D N L P +E E+ IL P+D+++ + +V+WLRR+EYI
Sbjct: 68 KALVDYLDVLETNAEEVLRPTEEVAEEDKILLTAPRDAQQGAGASSKRPNVTWLRRSEYI 127
Query: 146 STEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSK 205
+ E TR + VE K F++ + Y Q+ IE TF + +K
Sbjct: 128 AHE-TRSTTGRKEGVENK--FAMSGAAAKKRSYDTMQEQIAGIENTFKPVSTDLRHPQTK 184
Query: 206 PNVTPVEIMPVYPDFKYWK--YPCAQVIFDSDP------------APVGRPIPAQIEEMS 251
V +I P+ PD W+ Y Q F +P APV P+ I+
Sbjct: 185 SKVK--KITPLLPDMNCWENIYTIGQ--FSVEPADEARKAKRRAVAPVNNVRPSAIDATD 240
Query: 252 QAMIRGVMD--ESGEQFVAYFLPTAET---LDKRKLDQLS-----NLEYTDEQEYEY 298
+ ++R +++ + + ++ +FLP + L ++K D L+ NL Y +YEY
Sbjct: 241 RGILRPMVNPHDPTDTYLVWFLPDGPSTARLVQQKEDPLASLSDDNLTYNAVCDYEY 297
>gi|328870376|gb|EGG18750.1| RNA polymerase II-associated factor 1 [Dictyostelium fasciculatum]
Length = 476
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 135 SVSWLRRTEYISTEQTRF-QPQVMDKVEAKVGFS---IKKN---FKEDNLYMDRDSQVKA 187
SV+WLR+TEY+ST +T +P V + G S + N ++ +
Sbjct: 213 SVAWLRKTEYLSTNETLLGRPTKRQSVGS--GSSSPNVNGNQSSTTSATATAAAETDEEI 270
Query: 188 IEKTFADSKLPIEKHYSKP----NVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV---- 239
+E TF + K + P ++ PV I+PV+PDF+ W +V FD+DP +
Sbjct: 271 VENTFYNIK--NASQFVHPSGRTDIKPVSILPVFPDFEMWSNSYTEVSFDADPLDLPPAS 328
Query: 240 --GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYE 297
G+ I + Q +G++ ++FV + P K +L++ +N DE +
Sbjct: 329 LKGQDFSNYIAKQQQIRNKGIIRGITDKFVYFIAP------KNELEENNNNREKDETPGD 382
Query: 298 YKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSK 342
YKM R + ++ + ENYF+IV+DDAVYYN L TRV L +
Sbjct: 383 YKMYRVFTNDI---FVQENNENYFMIVKDDAVYYNRLNTRVNLKR 424
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 35 SELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDL 94
++ +C ++Y+NTLPD+ F+ KF+ + T+F Y+ TSLERNYK ++LT+ +G+ IDL
Sbjct: 36 NDFLCSLRYDNTLPDLSFEPKFMKIQTDFTKFTSYRPTSLERNYKQQLLTDPHMGIPIDL 95
Query: 95 INKDTYA 101
I+ YA
Sbjct: 96 IDLSQYA 102
>gi|392565249|gb|EIW58426.1| hypothetical protein TRAVEDRAFT_167944 [Trametes versicolor
FP-101664 SS1]
Length = 389
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 69/331 (20%)
Query: 82 VLTEHDLGVTIDLINKDTYA------------PNYNIQLDPADEKLLEEDILT------- 122
++ + +LG+ +DL D P+ +LDP D+ LL + T
Sbjct: 20 MVVDGELGMPLDLSQWDCLWEENGDDSELNPDPSCVSKLDPLDQFLLGDPASTSTPFLGP 79
Query: 123 -----PQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNL 177
P S H V+WLR+TEY+S E A + IK+N ++ +
Sbjct: 80 STPGIPTPSTSMPH----VAWLRKTEYLSRENAS---------RASLSQDIKQN-QDHTI 125
Query: 178 YMDRDSQVKAIEKTFA---DSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDS 234
+ RD+QV+ I+ +FA +S L +H +KP +T VE ++PD + W A +F
Sbjct: 126 DISRDAQVRDIDASFAAVANSDLASLRHPTKPELTAVEEFEIFPDAEIWA--NAYDLFRF 183
Query: 235 DPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP----TAETLDKRKLDQLSNLEY 290
P RP+ + A++R M+ G+ F+AY+L A + +L + +
Sbjct: 184 SERPGDRPVDVDDPRLDCAVLRP-MEADGDHFLAYYLTKDDEDALEFKRNRLARSPDDPP 242
Query: 291 TDEQEYEYKMAREYNWNVKSKSCKGYEE--NYFLIVRDDAV----------YYNELETRV 338
DE + + R+Y ++ K +E N FL+V DD + YY +E ++
Sbjct: 243 EDEPTH-FHFVRDY------ETVKVEQEVPNEFLLVLDDGMSADPPRAKGAYYKNIERKM 295
Query: 339 RLSKRRQKVGAAPNNTRLVV--THRPLNATE 367
L K+R A + VV TH P++A E
Sbjct: 296 LLKKKRVNTYEAYGDKWDVVKLTHTPMSAEE 326
>gi|430813384|emb|CCJ29263.1| unnamed protein product [Pneumocystis jirovecii]
Length = 392
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 180/394 (45%), Gaps = 50/394 (12%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTS-LERNYKYEVLTEHDLGVT 91
RR + + ++Y N LP PF K + P ++ E S L + + + +LG+
Sbjct: 4 RRQDYISYIRYQNQLPLPPFAPKMLNIPIPLNKYTETSYLSQLIQEEPIHIELDPELGMP 63
Query: 92 IDLIN---------KDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRT 142
+DL + D + N++LDP D LL+E TPQ ++ VS+LRRT
Sbjct: 64 LDLTSYSKVRPYEALDLHDNAENVKLDPKDIALLKEVSSTPQ------RNSTGVSFLRRT 117
Query: 143 EYISTEQTRFQPQVMDKVEAKVGF---SIKKNFKEDNLYMDRDSQVKAIEKTFADS--KL 197
EYIS+E + + ++ K G S+K + E+N + + + QV+AIE F D+ L
Sbjct: 118 EYISSEGAK------NTIKTK-GHDFRSVKSDDSENNKFENPEKQVEAIEAMFEDASKDL 170
Query: 198 PIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPI---PAQIEEMSQAM 254
H + +T V+ PV+PD + F +DP + I P+ + A+
Sbjct: 171 SSFTHPHRKYLTVVDSFPVFPDIDVSDQQFLLMKFTTDPG--QKTISSEPSADCRLDLAL 228
Query: 255 IRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCK 314
V E GE+++AY+L ++ + K + L N + +E + + N++ +
Sbjct: 229 FMPV-SERGEEWLAYYLAEEDSYFQLK-ETLKN-QNCEENKAPFLYNHIRNYDTMMHINQ 285
Query: 315 GYEENYFLIVRDDAV-------YYNELETRVRLSKRRQKVG----AAPNNTRLVVTHRPL 363
+ L+ R+DA +Y+ + + L +RR K+ N + + + RPL
Sbjct: 286 TPLDEVVLVFRNDATSDIKKGAFYSPIYAKSTLKRRRSKIPNEMIKNLNVSNIELRLRPL 345
Query: 364 NATEFRIQRLRERFLEP---PNEEEEEEDEEEEE 394
+ E + ++ ++P PN+ +E E EE E
Sbjct: 346 DEEENKERKRHCSTIDPYNYPNDSKEIEQEENIE 379
>gi|353235881|emb|CCA67887.1| related to DNA-directed RNA polymerase II regulator [Piriformospora
indica DSM 11827]
Length = 365
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 144/333 (43%), Gaps = 68/333 (20%)
Query: 108 LDPADEKLLEEDILTPQDSKRSRH---HARSVSWLRRTEYISTEQTRFQPQVMDKVEAKV 164
+DP DE +LE + ++ H VSWLRRTEY++ + + ++
Sbjct: 39 IDPKDEFMLEGFTMQAGPTRPGGHTSSQPLQVSWLRRTEYVTAKDS----------SPRM 88
Query: 165 GFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIE----KHYSKPNVTPVEIMPVYPDF 220
K+ +E N+ + R++Q++ +E TF S I+ +H ++P VE+ V PD
Sbjct: 89 TMLSKRGAEEANVDISREAQIRDVEATFPPSYHGIDITEIRHPARPARRAVEVFEVLPDP 148
Query: 221 KYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP-----TAE 275
+ + A IF P RP+ + + A+IR V+ + GE F+AY+LP AE
Sbjct: 149 E--TFATATDIFRFPERPGERPLVQEDPRLDCAVIRPVVLDDGETFIAYYLPRDDASAAE 206
Query: 276 TLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIV----------- 324
+R NL D++ + + R Y +SK G L
Sbjct: 207 LKQRRDFALEMNLS-ADDKPVAFDLVRNY----ESKVLPGEGTELVLFFDNGDLPAHVDA 261
Query: 325 ---------RDDAVYYNELETRVRLSKRRQKVGAAPN-------NTRLV-VTHRPLNATE 367
R VYY ++TR L ++R PN T ++ +++R ++ E
Sbjct: 262 VGTTREPESRQKGVYYKLVDTRRALKRKR----VDPNEPTDYSTKTDVINLSYRAMDEGE 317
Query: 368 FR-----IQRLRERFLEPPNEEEEEEDEEEEEE 395
+ ++ L F EP +EE ++D+ E+ E
Sbjct: 318 LKEREAELEELINPFYEP--QEELDQDDAEKVE 348
>gi|390360905|ref|XP_791225.3| PREDICTED: SCO-spondin [Strongylocentrotus purpuratus]
Length = 3123
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 9/205 (4%)
Query: 411 QEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSR 470
+E + G +E +++++ S ++ S++ SR S ++S SK +SP S +
Sbjct: 162 KENKSGSKESPRHHSHESKENKSGSKEPSRHHSRESKENKSGSK-ESPRHHSHGSKENKS 220
Query: 471 GSNKSDRSAKSDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRS 530
GS +S R S S +S ++ S S +SGS S + S S+ +GS S
Sbjct: 221 GSKESPRH-HSHGSKESKSGSKESPRHHSHESKEDKSGSKVSPRHHSHGSKENKSGSKES 279
Query: 531 AASNKSVRSDKSAASNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSR 590
+ + + S S R S S N+S S+ + S+ S NKSGS+
Sbjct: 280 PRHHSHGSKENKSGSKESPRHH-SHGSKENKSGSKESPRLHSHGS-----KENKSGSKES 333
Query: 591 SRSVSRARSNRSRSASKSGSSAASS 615
SR S+ S ++S KSGS +SS
Sbjct: 334 SRHHSK-ESKENKSGFKSGSKESSS 357
Score = 55.5 bits (132), Expect = 8e-05, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 22/221 (9%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEA-----ERQEGEGGEREGGGEGENDNEKRTSDAE 436
N+ +E E++E + G + E +E + G +E + +++ S ++
Sbjct: 164 NKSGSKESPRHHSHESKENKSGSKEPSRHHSRESKENKSGSKESPRHHSHGSKENKSGSK 223
Query: 437 HSSKNSSRASSRSRSRSKSKSP------AKRSRSGS-ASSRGSNKSDRSAKSDRSAKSDR 489
S ++ S S S+S SK +SP +K +SGS S R + + KS
Sbjct: 224 ESPRHHSHGSKESKSGSK-ESPRHHSHESKEDKSGSKVSPRHHSHGSKENKSGSKESPRH 282
Query: 490 SARSDRSDKSAA--SNRSRSGSAASNKSRSDRS-RSGSAGS--DRSAASNKSVRSDKSAA 544
+ + +KS + S R S + NKS S S R S GS ++S + S K +
Sbjct: 283 HSHGSKENKSGSKESPRHHSHGSKENKSGSKESPRLHSHGSKENKSGSKESSRHHSKESK 342
Query: 545 SNRSARSDGSDKSASNRSR----SRSASSQASNNSAASNRS 581
N+S GS +S+S SR S S SS ++A +R+
Sbjct: 343 ENKSGFKSGSKESSSMESRFTWDSWSGSSSEEFTTSAPSRT 383
Score = 47.4 bits (111), Expect = 0.025, Method: Composition-based stats.
Identities = 57/200 (28%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 429 EKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSD 488
EKR +HS +N S + R S +K ++SGS S R +K ++S S
Sbjct: 155 EKR---GKHSKENKSGSKESPRHHSHE---SKENKSGSKEP--SRHHSRESKENKSG-SK 205
Query: 489 RSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRS 548
S R S S ++SGS S + S S+ +GS S + + + S S
Sbjct: 206 ESPRH----HSHGSKENKSGSKESPRHHSHGSKESKSGSKESPRHHSHESKEDKSGSKVS 261
Query: 549 ARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKS 608
R S S N+S S+ + S+ S NKSGS+ R S S ++S SK
Sbjct: 262 PRHH-SHGSKENKSGSKESPRHHSHGS-----KENKSGSKESPRHHSHG-SKENKSGSKE 314
Query: 609 GSSAAS-----SRSGSPAGS 623
S ++SGS S
Sbjct: 315 SPRLHSHGSKENKSGSKESS 334
>gi|242019442|ref|XP_002430170.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212515261|gb|EEB17432.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 818
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 118/197 (59%), Gaps = 31/197 (15%)
Query: 435 AEHSSKNSSRASSRSRS------RSKSKSPA-KRSRSGSASSR----GSNKSDR----SA 479
A S++ S AS RSRS RS+S S A KRSRSGSA+SR GS S R SA
Sbjct: 250 ASRRSRSGSAASKRSRSGSAASKRSRSGSAASKRSRSGSAASRRSRSGSAASRRSRSGSA 309
Query: 480 KSDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSD-----RSRSGSAGSDRS---A 531
S RS ++R RS SA S RSRSGSAAS +SRS RSRSGSA S RS +
Sbjct: 310 ASRRSRSGSAASRRSRSG-SAGSKRSRSGSAASKRSRSGSAASKRSRSGSAASKRSRSGS 368
Query: 532 ASNKSVRSDKSAASNRSARSDGSDKSASNRSRSRSASSQAS-NNSAASNRSSNKSGSRSR 590
A++K RS SAAS RS S +AS RSRS SA S+ S + SAAS RS + S + R
Sbjct: 369 ATSKRSRSG-SAASKRSR----SGSAASKRSRSGSAVSRRSRSGSAASKRSRSGSAASRR 423
Query: 591 SRSVSRARSNRSRSASK 607
SRS S+ SNRSRS SK
Sbjct: 424 SRSGSKG-SNRSRSNSK 439
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 62/115 (53%), Gaps = 18/115 (15%)
Query: 415 GGEREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRS------RSKSKSPA-KRSRSGSA 467
G +R G + + S A S++ S AS RSRS RS+S S A KRSRSGSA
Sbjct: 330 GSKRSRSGSAASKRSRSGSAASKRSRSGSAASKRSRSGSATSKRSRSGSAASKRSRSGSA 389
Query: 468 SSR----GSNKSDRSAKSDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSD 518
+S+ GS S RS ++K RS SAAS RSRSGS SN+SRS+
Sbjct: 390 ASKRSRSGSAVSRRSRSGSAASKRSRSG-------SAASRRSRSGSKGSNRSRSN 437
>gi|50553684|ref|XP_504253.1| YALI0E22022p [Yarrowia lipolytica]
gi|49650122|emb|CAG79848.1| YALI0E22022p [Yarrowia lipolytica CLIB122]
Length = 386
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 148/336 (44%), Gaps = 39/336 (11%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSL---ERNYKYEVLTEHDLG 89
RR + + RV+Y N LP K + P + L +R ++ ++DLG
Sbjct: 3 RRQDYLVRVRYQNELPPPELPPKMLNIPVPPEKLTSLGINILSDMQRRESPQINVDNDLG 62
Query: 90 VTIDL------INKD----TYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWL 139
+ +DL +D +LDP D LL+E PQ + V++L
Sbjct: 63 MPLDLTEIRGVFEQDDESGLLPLENLPELDPRDLVLLKE----PQSTGNKSQPG--VAFL 116
Query: 140 RRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTF--ADSKL 197
RRTEYIS+E + + ++ + A +K +E + D +SQ++A+E TF A++ +
Sbjct: 117 RRTEYISSEVSGGRK--LETLSASQRRLAQKTLEES--FQDPESQLRAVEATFEAANTDI 172
Query: 198 PIEKHYSKPNVTPVEIMPVYP-----DFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQ 252
KH KP++T VE P+ P D + P P G P P +MS
Sbjct: 173 KTLKHPKKPHLTAVESFPILPNSQIFDLTFLTMKMVGSAVGVPPLPDGSPDP----KMSV 228
Query: 253 AMIRGVMDESGEQFVAYFLPTAETLD-KRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSK 311
++ R + E+ E + E+ D KR+LD D+ Y ++ R+Y+ +++
Sbjct: 229 SLFRPMTLETDEWMSMFLTKDEESKDLKRQLDSTDEHVADDKHVYRFEHKRDYDMDLQMN 288
Query: 312 SCKGYEENYFLIVRD---DAVYYNELETRVRLSKRR 344
+ + +EE + D +Y ++ + L +RR
Sbjct: 289 ASQ-FEEIVIDVDLDKPGSVAHYVPVQGKTNLKRRR 323
>gi|342319343|gb|EGU11292.1| RNA polymerase II-associated protein [Rhodotorula glutinis ATCC
204091]
Length = 463
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 157/383 (40%), Gaps = 79/383 (20%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTS-LERNYKYEVLTEHDLGVTI 92
+++L+ RV+Y N LP PF K I P R+ Y S ++ + ++ + +LG+ +
Sbjct: 8 KTDLLVRVRYQNPLPAPPFPPKLINIPTGPQRYATYDFLSPIQGERELPLILDSELGLPL 67
Query: 93 D---------------LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARS-- 135
+ + N+ AP N ADE + TP+ + S
Sbjct: 68 EYGKPHEGGRGDGEYWMGNRTGIAPVPNPNAPIADEDAFMFEDATPRGAAGPSSATGSIP 127
Query: 136 ----------------VSWLRRTEYISTEQT--RFQPQVMDKVEAKVGFSIKKNFKEDNL 177
VSWLR+TEY+S+E + R Q M+ +E L
Sbjct: 128 GTPGRASVTEVSKKVDVSWLRKTEYLSSEASSQRQALQAMNGTPK----------REPGL 177
Query: 178 -YMDRDSQVKAIEKTFADSKLPIE--KHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDS 234
+DRDS+ AI TFA++ P++ +H +K ++ VE + PD W V F
Sbjct: 178 NALDRDSRAAAISATFAEAHKPLDELQHPTKRDLRAVEAFELLPDDDLWANEYDLVRFGE 237
Query: 235 DPAPVGRPIPAQI---EEMSQAMIRGVMDE--SGEQFVAYFLPTAETLDKRKLDQLSNLE 289
DP+ PA++ + +A+ R + E GE V+++LP D+ L +
Sbjct: 238 DPSARAPGEPARLGPDPRLPRAIFRDLTSEFPEGEGRVSFYLPAN---DQAALG-YTEKR 293
Query: 290 YTDE-----QEYEYKMAREYNWNVKSKSCKGYEENY----------------FLIVRDDA 328
YT E + ++++ R+Y V + Y ++ + R
Sbjct: 294 YTGEESAEGEPFDFRWVRDYELLVSRPLAQEYIFSFDAGEDATEGEERVRPQTVGGRKKG 353
Query: 329 VYYNELETRVRLSKRRQKVGAAP 351
YY L+ ++L KRR K+G P
Sbjct: 354 AYYVPLQAAMQLRKRRPKLGEDP 376
>gi|390600188|gb|EIN09583.1| hypothetical protein PUNSTDRAFT_51813 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 415
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 170/379 (44%), Gaps = 70/379 (18%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKST-SLERNYKYEVLTEHDLGVTI 92
+ +L+ RV+Y N LP P K + P + +R+ + + T ++ ++ + ++G+ +
Sbjct: 7 KLDLLIRVRYQNPLPAPPCPPKLLNIPTDPSRYAKPEFTDAIANETPLPMVVDAEMGMPL 66
Query: 93 DL---------------INKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHA---- 133
DL +N D PN +LDP DE LL + + + HA
Sbjct: 67 DLGQWECLWQENGDDSELNPD---PNDLPKLDPKDEFLLGDPA---SGAPYTNGHASGPA 120
Query: 134 -------RSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVK 186
+V+WLRRTEYIS EQ +P +++ V E + + R +Q++
Sbjct: 121 TPTPITPANVTWLRRTEYISREQ---RPAHAHELKMVV---------EPQIDVSRAAQIR 168
Query: 187 AIEKTFA-----DSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGR 241
IE +FA D L +H +KPNVT V+ V PD + W F P R
Sbjct: 169 QIEASFAAASEADEDLSRLRHPNKPNVTAVDSYDVLPDAEIWANTYDLFRFSERPG--DR 226
Query: 242 PIPAQIEEMSQAMIRGVMDESGEQFVAYFLP----TAETLDKRKLDQLSN----LEYTDE 293
P + + A++R M+ GE F+AY+L +A +R+LD S + + E
Sbjct: 227 PPDVEDPRLDCAILRP-MESDGEHFLAYYLTKDDESALEFKRRRLDPPSEPHDPVHFQFE 285
Query: 294 QEYEY-KMAREYNWNVKSKSCKGY-EENYFLIV-----RDDAVYYNELETRVRLSKRRQK 346
++YE K+ RE +G EEN + V R YY +E ++ L ++RQ
Sbjct: 286 RDYELRKIEREVPNEFLLVLDEGTGEENLYGDVSETPTRPKGAYYKNIERKMMLKRKRQN 345
Query: 347 VGAAPNNTRLV--VTHRPL 363
+ A + V VTH+P+
Sbjct: 346 IHEAYADKWDVVRVTHQPM 364
>gi|393236279|gb|EJD43829.1| Paf1-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 419
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/368 (25%), Positives = 160/368 (43%), Gaps = 78/368 (21%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKST-SLERNYKYEVLTEHDLGVTI 92
+ +L+ RV+Y+N LP PF K + P R+ + T +L ++ + DLG+ +
Sbjct: 7 KLDLLVRVRYSNPLPPPPFPPKLLTIPTSPARYAQPSFTDALAAETPLPMIVDSDLGMPL 66
Query: 93 DLINKDTYAPNYN--IQLDPADEKL---------LEEDILT--PQDSKRSRH-------- 131
DL + + + QL+P+++++ L DIL+ P+D H
Sbjct: 67 DLGHWECLWEDKGDLSQLNPSEDQIPEPDPRDLFLLGDILSSLPEDQANGAHPNGGAATK 126
Query: 132 ----------HARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD- 180
+VSWLR+TEY+S E R Q Q F+ + +E++ +D
Sbjct: 127 SLPDTPGTPSAPAAVSWLRKTEYLSREPGR-QRQ----------FAWIQGNRENDEVVDI 175
Query: 181 -RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
R++Q++ IE TF + H +KP +T V + PD + W P A +F P
Sbjct: 176 SREAQIRDIEATFELPDVATLTHPTKPGLTAVAVYDALPDAELW--PNAYDLFKFAERPG 233
Query: 240 GRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP----TAETLDKRKLDQLSNL--EYTDE 293
A+++ A++R M+ G+ F+AY+L ++E L R+ QL + D
Sbjct: 234 DGTADARLD---SAVLRP-MESDGDHFLAYYLTRDDESSEKLKARRRGQLGDPSEAAVDR 289
Query: 294 QEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDD-----------------AVYYNELET 336
++ R+Y ++ + N FL+V DD YY +E
Sbjct: 290 APTQFHFVRDY----ETVKIEQDVPNEFLLVLDDGDLPPAHVGGSVATRPRGAYYKNIER 345
Query: 337 RVRLSKRR 344
++ L K+R
Sbjct: 346 KITLKKKR 353
>gi|403417479|emb|CCM04179.1| predicted protein [Fibroporia radiculosa]
Length = 433
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 83/321 (25%)
Query: 82 VLTEHDLGVTIDL---------------INKDTYAPNYNIQLDPADEKLLEE-------- 118
++ + DLG+ +DL +N D P+ LDP DE LL +
Sbjct: 56 MIVDGDLGMPLDLSRWECLWGENGDDSELNPD---PDNPPVLDPKDELLLADPSTSTPFS 112
Query: 119 ------DILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNF 172
LTP S+ +V WLR+TEY+S E A + K N
Sbjct: 113 SNGFSTSGLTPSSSQT---MMPNVPWLRKTEYLSREGV---------TRASLSQEAKHNM 160
Query: 173 KEDNLYMDRDSQVKAIEKTFADSK---LPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQ 229
+ + + R +Q++ IE +FA ++ L +H +KPNVT VE ++PD + W A
Sbjct: 161 -DAAIDISRSAQIRDIEASFAVTENFDLKTLRHPNKPNVTAVESYEIFPDAEIWA--NAY 217
Query: 230 VIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETL--DKRKLDQLSN 287
+F P RP + + A++R M+ G+ F+AY+L + L + +K+ +
Sbjct: 218 DLFRFSERPGERPPDVEDPRLDCAILRP-MESDGDHFLAYYLTKEDELAVEFKKMRLARS 276
Query: 288 LEYTDEQE-YEYKMAREYNWNVKSKSCKGYEE--NYFLIVRDD----------------- 327
+ T+E+E + R+Y ++ K +E N FL+V DD
Sbjct: 277 PDATEEEEPTPFHFVRDY------ETVKVEQEVPNEFLLVIDDGDEDLADEGDEDTKHRK 330
Query: 328 ----AVYYNELETRVRLSKRR 344
YY +E ++ L K+R
Sbjct: 331 SRPKGAYYKNIERKMLLKKKR 351
>gi|393222197|gb|EJD07681.1| hypothetical protein FOMMEDRAFT_24985 [Fomitiporia mediterranea
MF3/22]
Length = 419
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 37/232 (15%)
Query: 133 ARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD--RDSQVKAIEK 190
A VSWLR+TEYIS+ R P V+ ED +D R++Q++ IE
Sbjct: 122 APQVSWLRKTEYISSTVNR-TPTVIRDTRRTAA-------AEDARIVDISREAQLRDIEN 173
Query: 191 TF----ADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQ 246
+F + L KH +KP VT VE + PD W F P +P
Sbjct: 174 SFRSLGDNFDLSQLKHPNKPGVTAVESYEILPDTDIWANAYDLFRFSERPGDRAADVPDP 233
Query: 247 IEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNW 306
++ ++R M+ G+ F+AYFLP + + + +++ N E +E + + R+Y
Sbjct: 234 --RINCGILRP-MEADGDHFLAYFLPKEDEMAENFVERRRNGENVEETIFSF--IRDY-- 286
Query: 307 NVKSKSCKGYEENYFLIVRDD--------------AVYYNELETRVRLSKRR 344
++ + +N FL+V DD YY +E ++ L KRR
Sbjct: 287 --ETVKIEQDVQNEFLLVLDDGDIKSEGDSGRREKGAYYKNIERKILLKKRR 336
>gi|336368386|gb|EGN96729.1| hypothetical protein SERLA73DRAFT_184888 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381188|gb|EGO22340.1| hypothetical protein SERLADRAFT_473048 [Serpula lacrymans var.
lacrymans S7.9]
Length = 455
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 63/308 (20%)
Query: 104 YNI-QLDPADEKLLEEDILTPQ----------DSKRSRHHARSVSWLRRTEYISTEQTRF 152
YN+ LDP D LL + TP S S V WLR+TEYIS E +
Sbjct: 89 YNLPALDPKDRFLLGDPATTPGPYLNGNSSAVGSGASTPLPVHVPWLRKTEYISREGVQR 148
Query: 153 QPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADS----KLPIEKHYSKPNV 208
+ + K N + ++ + R +Q++ IE +F+ +L +H +KPNV
Sbjct: 149 SASLQEP---------KHNMNQ-HIDVSRSAQIRDIEASFSSCNDKFELSALRHPNKPNV 198
Query: 209 TPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVA 268
T VE ++PD W A +F P R + + A++R M+ G+ F+A
Sbjct: 199 TAVESFEIFPDADIWA--NAYDLFRFSERPGERALDIDDSRLDCAILRP-MEAEGDHFLA 255
Query: 269 YFLP-TAETLDKRKLDQLSNLEYTDEQE---YEYKMAREYNWNVKSKSCKGYEE--NYFL 322
Y+L E K +++N E D +E + R+Y ++ K +E N FL
Sbjct: 256 YYLTKDDEAAVTFKTTRMAN-ESLDSEEPPSTAFHFVRDY------ETVKVEQEVPNEFL 308
Query: 323 IVRDD--------------------AVYYNELETRVRLSKRRQKVGAAPNNTRLVV--TH 360
+V D+ YY +E ++ L K+R + +VV +H
Sbjct: 309 LVLDEGDSQSITNGSDEVLEGRRSKGAYYKNIERKMILKKKRTNTQEGYGDKWMVVNISH 368
Query: 361 RPLNATEF 368
PL+ E
Sbjct: 369 VPLSKEEL 376
>gi|395326947|gb|EJF59351.1| hypothetical protein DICSQDRAFT_162524 [Dichomitus squalens
LYAD-421 SS1]
Length = 429
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 162/387 (41%), Gaps = 85/387 (21%)
Query: 34 RSELVCRVKYNN---------TLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLT 84
+ +L+ RV+Y+N L DIP D A P F++ + + ++
Sbjct: 7 KLDLLIRVRYSNPLPPPPCPPKLLDIPTDPMRYARP----EFLDEIAAAT----PLPMVV 58
Query: 85 EHDLGVTIDLINKDTYA------------PNYNIQLDPADEKLLEE-----DILTPQDSK 127
+ DLG+ +DL D PN +LDP D+ LL + +L +
Sbjct: 59 DGDLGMPLDLSRWDCLWEENGDDSELNPDPNNLPKLDPKDQFLLGDPASTGPVLGTGSTS 118
Query: 128 RSRHHARS---VSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQ 184
+ S V WLR+TEY+S + +P + +++ + SI + R++Q
Sbjct: 119 GTSTPLSSVPHVPWLRKTEYLSRDGL-MRPNISQEIKQHIDVSID---------VSREAQ 168
Query: 185 VKAIEKTFA---DSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGR 241
++ IE +FA S+L +H +P +T VE V+PD W A +F P R
Sbjct: 169 LRDIEASFAAVETSELSALRHPLRPELTAVEAFEVFPDADIWA--NAYDLFRFSERPGDR 226
Query: 242 PIPAQIEEMSQAMIRGVMDESGEQFVAYFLP----TAETLDKRKLDQLSNLEYTDEQEYE 297
P + + A++R M+ G+ F+AY+L A + +L + + DE Y
Sbjct: 227 PPDMEDPRLDCAILRP-MEADGDHFLAYYLTKEDEAAVQFKENRLAREPDAPPEDEPTY- 284
Query: 298 YKMAREYNWNVKSKSCKGYEE--NYFLIVRDDAV-----------------YYNELETRV 338
+ R+Y ++ K +E N FL+V D+ YY +E ++
Sbjct: 285 FHFVRDY------ETVKVEQEVPNEFLLVLDEGTDEFDTDTKGGVPRPKGAYYKNIERKM 338
Query: 339 RLSKRRQKVGAAPNNTRLVV--THRPL 363
L K+R + + VV TH P+
Sbjct: 339 LLKKKRVNTYESYGDKWDVVKLTHVPM 365
>gi|213404176|ref|XP_002172860.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
gi|212000907|gb|EEB06567.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
Length = 464
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 156/375 (41%), Gaps = 52/375 (13%)
Query: 3 PTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNT---------LPDIPFD 53
P + + PS +TP S RR + + RVKY+N L DIP
Sbjct: 7 PVLARRATDAPSLSQTPLNMSI--------RRQDYILRVKYHNPLPPPPFPPRLVDIPNP 58
Query: 54 CKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYN---IQLDP 110
+ A P + + K +++ + E+ DL + D+ A N +LDP
Sbjct: 59 VRQYADPSFVSNLAQEK--AIDFGLEPEMGMPLDLSSVMGAFEGDSSAMLANQSVTRLDP 116
Query: 111 ADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVE--AKVGFSI 168
D LL + + S V +LRRTEYIS+ R + A G ++
Sbjct: 117 KDRVLL-------KIAGGSGSSQIDVPFLRRTEYISSMIPRSASSSSGSLRNVAPTGKAL 169
Query: 169 KKNFKEDNLYMDRDSQVKAIEKTFADSKLPIE--KHYSKPNVTPVEIMPVYPDFKYWKYP 226
++ + D D Q+KAI++TFA + PIE KH +KPNV V + P+ + +
Sbjct: 170 AEHRGRE--LRDVDRQLKAIDETFAAVQQPIESLKHPTKPNVHAVNTWNLLPNEELIEQS 227
Query: 227 CAQVIF----------DSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLP---T 273
++ S A Q+ + + +GE++++YFLP T
Sbjct: 228 LQHILVRVADDLTERSHSVNATQATQTSNQLSSRHEVALFMPSSSNGEEYLSYFLPNDDT 287
Query: 274 AETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD--DAVYY 331
AE + ++ DE + + +R ++ ++ + G+E+ + R+ DA+ Y
Sbjct: 288 AERMKRKIYHPEEAGADADEAPFTFTRSRNFDASMHVNAS-GFEDVCIVFNRNATDAL-Y 345
Query: 332 NELETRVRLSKRRQK 346
+ L R L +RR +
Sbjct: 346 SPLFARSTLKRRRMR 360
>gi|333927559|ref|YP_004501138.1| hypothetical protein SerAS12_2710 [Serratia sp. AS12]
gi|333932513|ref|YP_004506091.1| hypothetical protein SerAS9_2709 [Serratia plymuthica AS9]
gi|386329382|ref|YP_006025552.1| hypothetical protein [Serratia sp. AS13]
gi|333474120|gb|AEF45830.1| hypothetical protein SerAS9_2709 [Serratia plymuthica AS9]
gi|333491619|gb|AEF50781.1| hypothetical protein SerAS12_2710 [Serratia sp. AS12]
gi|333961715|gb|AEG28488.1| hypothetical protein SerAS13_2711 [Serratia sp. AS13]
Length = 379
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 9/177 (5%)
Query: 450 RSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKS---DRSARSDRSDKSAASNRSR 506
++ + ++S A + + SA+S N+S S DRSA S D SA S+ D SAASN
Sbjct: 112 QTNTGNRSAASNTGNRSAASNTGNRSAASNTGDRSAASNTGDYSAASNTGDYSAASNTGY 171
Query: 507 SGSAASNKSRSDRSRSG--SAGS---DRSAASNKSVRSDKSAASNRSARSDGSDKSASNR 561
+A++ +RS S +G SA S DRSAASN RS S NRSA S+ D SA++
Sbjct: 172 RSAASNTGNRSAASNTGDYSAASNTGDRSAASNTGYRSAASNTGNRSAASNTGDYSAASN 231
Query: 562 SRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKSGSSAASSRSG 618
+ RSA+S N SAASN + S + S + RS +AS +G+ +A+S +G
Sbjct: 232 TGDRSAASNTGNRSAASNTGDYSAASNTGDYSAASNTGYRS-AASNTGNRSAASNTG 287
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 13/182 (7%)
Query: 445 ASSRSRSRSKSKSPAKRSRSGSASSR--GSNKSDRSAKS---DRSAKSD---RSARSDRS 496
A+S + +RS + + RS + + R SN D SA S D SA S+ RSA S+
Sbjct: 120 AASNTGNRSAASNTGNRSAASNTGDRSAASNTGDYSAASNTGDYSAASNTGYRSAASNTG 179
Query: 497 DKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDK 556
++SAASN SAASN DRS + + G RSAASN RS S + SA S+ D+
Sbjct: 180 NRSAASNTGDY-SAASNT--GDRSAASNTGY-RSAASNTGNRSAASNTGDYSAASNTGDR 235
Query: 557 SASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKSGSSAASSR 616
SA++ + +RSA+S + SAASN + S + RS + NRS +AS +G +A+S
Sbjct: 236 SAASNTGNRSAASNTGDYSAASNTGDYSAASNTGYRSAASNTGNRS-AASNTGDYSAASN 294
Query: 617 SG 618
+G
Sbjct: 295 TG 296
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 486 KSDRSA-RSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAA 544
K DRS +++ ++SAASN +A++ +RS S +G DRSAASN D SAA
Sbjct: 105 KVDRSLEQTNTGNRSAASNTGNRSAASNTGNRSAASNTG----DRSAASNT---GDYSAA 157
Query: 545 SNR---SARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNR 601
SN SA S+ +SA++ + +RSA+S + SAASN + S + RS + NR
Sbjct: 158 SNTGDYSAASNTGYRSAASNTGNRSAASNTGDYSAASNTGDRSAASNTGYRSAASNTGNR 217
Query: 602 SRSASKSGSSAASSRSG 618
S +AS +G +A+S +G
Sbjct: 218 S-AASNTGDYSAASNTG 233
>gi|402223427|gb|EJU03491.1| RNA polymerase II-associated [Dacryopinax sp. DJM-731 SS1]
Length = 424
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 147/336 (43%), Gaps = 47/336 (13%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKST-SLERNYKYEVLTEHDLGVTI 92
+++L+ RV+Y N LP+ P K + P R+ + T +L + ++ + + G+ +
Sbjct: 6 KNDLIVRVRYQNPLPEPPCPPKLLNIPTTPARYAQPSFTDTLFDARPFPMVIDSEFGMPL 65
Query: 93 DLINKDTYA--PNYNIQLDPADEKLLEEDILTPQDSKRSRHHARS----------VSWLR 140
DL + QL+P E +L+E +D H + + V WLR
Sbjct: 66 DLSKFPLLWREEEEDPQLNPTQEAVLDE-----RDRFLLEHISANTSGTLSALPNVPWLR 120
Query: 141 RTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFA----DSK 196
+T YIS E V + ++ + + + RD Q++ +E++FA ++
Sbjct: 121 QTTYISRESVN-----RTSSSNAVANAAREGAAQQPVDVSRDRQLRLVEESFAAVTANAD 175
Query: 197 LPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIR 256
L KH +KP VT VE++ + PD W P ++ P R I + A+IR
Sbjct: 176 LGTLKHPNKPGVTAVEVLDILPDEMTW--PTKLDVYRFSERPGDRDIEQPDPRLDSAIIR 233
Query: 257 GVMDESGEQFVAYFLPTAETLDKRKLDQLSNLE--YTDEQEYEYKMAREYNWNVKSKSCK 314
+ E + ++AY+L + +L+ L ++E+ E++ R+Y ++ K
Sbjct: 234 PMKVEDEDTWLAYYLLADDAAVAAYKSRLAALPEGASEEEMSEFRFVRDY------ETMK 287
Query: 315 GYEENY--FLIVRDDAV--------YYNELETRVRL 340
EE +L+V DD YY +E R+ L
Sbjct: 288 VMEECVSDWLMVLDDGTETGRKPGAYYKNIERRMWL 323
>gi|344302664|gb|EGW32938.1| hypothetical protein SPAPADRAFT_49866 [Spathaspora passalidarum
NRRL Y-27907]
Length = 443
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 23 STPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFI----EYKSTSLERNY 78
S P +P R + + +V+Y N LP P + KFIAY T E +SL R
Sbjct: 2 SQPSSSKPT--RQDYIAKVRYTNNLPPPPLNPKFIAYNTTETTSSKVEGEQLMSSLFRKE 59
Query: 79 KYE-VLTEHD--LGVTIDLINKDTY----------APNYNIQLDPADEKLLEEDILTPQD 125
++ +L + D G+ ++LI+ + NIQL P D LL + +
Sbjct: 60 NFQSLLAQVDDFYGMGLNLIDNSGFLDLGNDSVISGKTGNIQLHPKDRALLRDAGI---- 115
Query: 126 SKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQV 185
K S+ VS+LRRTEY+S + + +D+++ K +KK +E+ + MD DSQ+
Sbjct: 116 GKISKSEP-GVSFLRRTEYMSEARPSSKGGAVDELQKKETTRVKKIAEEEEM-MDADSQL 173
Query: 186 KAIEKTF---ADSKLPIEK--HYSKPNVTPVEIMPVYPD 219
KA+E TF +S + +K H K ++ V++ P+ PD
Sbjct: 174 KAVEDTFDKAQESLVNFDKIRHPKKKHLRAVDVWPLLPD 212
>gi|448101449|ref|XP_004199563.1| Piso0_002100 [Millerozyma farinosa CBS 7064]
gi|359380985|emb|CCE81444.1| Piso0_002100 [Millerozyma farinosa CBS 7064]
Length = 498
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 54/198 (27%)
Query: 65 RFIEYKST--------------SLERNYKYEVLTE---HDLGVTIDLINKDTYAPNYNIQ 107
+F+EY +T SL R + L E D+G+ ++L+N +
Sbjct: 30 KFLEYNTTERSSTKTESEQVISSLFRKENFHSLIECIDEDMGMNLNLLNNKGF------- 82
Query: 108 LDPADEKLLEEDI--LTPQDSKRSRHHAR------------------SVSWLRRTEYIST 147
LD DE ++ + +D+K H R VS+LRRTEYIS
Sbjct: 83 LDENDESVIGMFLNEKNKKDNKPVTLHERDRELLRDAGIERIARSELGVSFLRRTEYISE 142
Query: 148 EQTRFQPQVMDKVEAKVGFSIKKNFKEDNL-YMDRDSQVKAIEKTFADSKLPIE-----K 201
+Q F + VE K KEDN +D D+Q++A+EKTFAD++ ++ K
Sbjct: 143 KQ--FMKPSANGVENGAHKLTKG--KEDNQEKLDADAQLQAVEKTFADAQKTLQDFQNIK 198
Query: 202 HYSKPNVTPVEIMPVYPD 219
H + N+ V P+ PD
Sbjct: 199 HPRRKNLKAVAAWPILPD 216
>gi|426226299|ref|XP_004007285.1| PREDICTED: uncharacterized protein LOC101112554 [Ovis aries]
Length = 4184
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 97/157 (61%), Gaps = 16/157 (10%)
Query: 469 SRGSNKSDRSAKSDRSAKSDRSARS--DRSDKSAASNRSRSGSAASNKSRSDRS-RSGSA 525
S G ++ S +S RSA S+RS RS +RS +SA+ RS S S++S S+RS RS S
Sbjct: 3899 SSGRSQYSPSERSHRSA-SERSHRSTSERSHRSASGRSHRSASEKSHRSASERSHRSASE 3957
Query: 526 GSDRSAASNKSVRSDKSAA--SNRSARSDGSDKSASNRSRSRSASSQASNNSAA--SNRS 581
S RSA S RS +SA+ S+RSA S+ S +SAS RS RSA S+ S+ SA+ S+RS
Sbjct: 3958 RSHRSA----SERSHRSASERSHRSA-SERSHRSASERSH-RSA-SERSHRSASERSHRS 4010
Query: 582 SNKSGSRSRSRSVSRARSNRS-RSASKSGSSAASSRS 617
+++ RS S R+ S RS RSAS+ +AS RS
Sbjct: 4011 ASERSHRSASERSHRSASERSHRSASERSHRSASERS 4047
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 101/191 (52%), Gaps = 29/191 (15%)
Query: 439 SKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDK 498
S+ S R++S RS S+ + RS SG + S KS RSA S +S RSA S+RS +
Sbjct: 3908 SERSHRSASERSHRSTSER-SHRSASGRSHRSASEKSHRSA----SERSHRSA-SERSHR 3961
Query: 499 SAASNRSRSGSAASNKSRSDRS-RSGSAGSDRSAA--SNKSV--RSDKSA-------ASN 546
SA+ RS S S++S S+RS RS S S RSA+ S++S RS +SA AS
Sbjct: 3962 SASERSHRSASERSHRSASERSHRSASERSHRSASERSHRSASERSHRSASERSHRSASE 4021
Query: 547 RSAR--SDGSDKSASNRS------RSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRAR 598
RS R S+ S +SAS RS RS + SQ S++S + S R RS S R R
Sbjct: 4022 RSHRSASERSHRSASERSHRSASERSHPSPSQRSHHSLSERSYRGPSERRCRSPSERRCR 4081
Query: 599 S---NRSRSAS 606
S R RS S
Sbjct: 4082 SPSERRCRSPS 4092
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 433 SDAEHSSKNSSRASSRSRSRSKSKSPAKRS-RSGSASSR--GSNKSDRSA--KSDRSAKS 487
S +E S +++S S RS S +S ++RS RS S S S +S RSA +S RSA S
Sbjct: 3922 STSERSHRSASGRSHRSASEKSHRSASERSHRSASERSHRSASERSHRSASERSHRSA-S 3980
Query: 488 DRSARS--DRSDKSAASNRSRSGSAASNKSRSDRS-RSGSAGSDRSAASNKSVRSDKSAA 544
+RS RS +RS +SA+ RS S S++S S+RS RS S S RS AS +S RS A
Sbjct: 3981 ERSHRSASERSHRSASERSHRSASERSHRSASERSHRSASERSHRS-ASERSHRS----A 4035
Query: 545 SNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNRSRS 604
S RS RS S RS + S+ S + R + S R RS S R RS RS
Sbjct: 4036 SERSHRSASERSHPSPSQRSHHSLSERSYRGPSERRCRSPSERRCRSPSERRCRSPSERS 4095
>gi|16555777|emb|CAD10044.1| surface-erythrocyte phosphoprotein [Babesia rossi]
Length = 719
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 432 TSDAEHSSKNSSRASSRSRSRSKS----------KSPAKRSRSGSASSRGSNKSDRSAKS 481
+S++ HS+ + +AS +S + KS +SP +GSA S GS KS S +S
Sbjct: 433 SSESLHSNIDDDKASVKSAASLKSADSAKSVASVRSPDSVESAGSAKSAGSVKSAASVRS 492
Query: 482 DRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDK 541
S +S SA+S S +SA S S +GSA S S SA S SA S KSV S +
Sbjct: 493 ADSVESAGSAKSAASVRSADSVES-AGSAKSVASVR------SADSVESAGSAKSVASVR 545
Query: 542 SAASNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNR 601
SA S SA GS KS ++ + S S S S AS RS++ S ++SV+ RS
Sbjct: 546 SADSVESA---GSAKSVASVRSADSVESAGSAKSVASVRSADSVESAGSAKSVASVRSAD 602
Query: 602 SRSASKSGSSAASSRS 617
S ++ S S AS RS
Sbjct: 603 SVESAGSAKSVASVRS 618
>gi|427792789|gb|JAA61846.1| Putative eukaryotic translation initiation factor 3 subunit 10,
partial [Rhipicephalus pulchellus]
Length = 821
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 430 KRTSDAEHSSKNSSRA----SSRSRS-RSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRS 484
K SD + S + SSR+ S RSRS +SKS +K+D + KSDRS
Sbjct: 598 KHRSDRDRSKEKSSRSDKDKSDRSRSDKSKSDREKSDRDRSDRDRSEKDKTD-NDKSDRS 656
Query: 485 AKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRS--GSAGSDRSAASNKSVRSDKS 542
K+DR D+S+K S+RSRS S+K +SDR +S S+R + S++ +SD+
Sbjct: 657 -KTDR----DKSEKD-KSDRSRSDKGKSDKDKSDRDKSDKDKEKSERDSKSDRDGKSDRD 710
Query: 543 AASNRSA----RSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGS 587
+ S+R RS+ ++K + R RS+ S NNS+ N++S++ S
Sbjct: 711 SKSDRGKSDKERSEKAEKGKAERDRSKDRSDIKENNSSERNKTSDRDKS 759
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 427 DNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAK 486
DN+K SD + ++ S RSRS K S + KS+R +KSDR K
Sbjct: 649 DNDK--SDRSKTDRDKSEKDKSDRSRSDKGKSDKDKSDRDKSDKDKEKSERDSKSDRDGK 706
Query: 487 SDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRS-AASNKSVRSDKSAAS 545
SDR ++SDR S++ RS A K+ DRS+ DRS N S +K++
Sbjct: 707 SDRDSKSDR----GKSDKERSEKAEKGKAERDRSK------DRSDIKENNSSERNKTSDR 756
Query: 546 NRSARSDGS--DKSASNRSRS 564
++S + DG D+ S+R RS
Sbjct: 757 DKSDKMDGEKPDRENSHRDRS 777
>gi|16769850|gb|AAL29144.1| SD04745p [Drosophila melanogaster]
Length = 751
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 452 RSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDKSAASNRSRSGSAA 511
R +S K SR G SSR + +SDR +SDR +SDR RSDR ++S RS G +
Sbjct: 630 RMESSRSEKDSRRGDRSSR-NERSDRGERSDRGERSDRGERSDRGERSDRGERSDRGERS 688
Query: 512 SNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRS---ARSDG 553
RSDR +RS A + D+ R R DG
Sbjct: 689 DRGERSDRGERSDREKERSRAKERERDRDRDLKGQRERKRERDDG 733
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 413 GEGGEREGGGEG-ENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRG 471
G G R G E + E + D E + NSS R R R KS +R+R S
Sbjct: 538 GNGQRRRDNSTGRERNRENSSYDRERNRGNSS--YDRERKRGKSSYDRERNRESSYDKER 595
Query: 472 SNKS----DRSAKSDRSAKSDR-------SARSDRSDKSAASNRSRSGSAASNKSRSDRS 520
N++ DR K DRS +R + R R + S + SR G +S RSDR
Sbjct: 596 KNRNAVAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRG 655
Query: 521 RSGSAG--------SDRSAASNKSVRSDKSAASNRSARSDGSDKSASNRSRSRS 566
G SDR S++ RSD+ S+R RSD ++S + RSR+
Sbjct: 656 ERSDRGERSDRGERSDRGERSDRGERSDRGERSDRGERSDRGERSDREKERSRA 709
>gi|50285375|ref|XP_445116.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524419|emb|CAG58016.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 175/395 (44%), Gaps = 70/395 (17%)
Query: 84 TEHDLGVTIDLIN----------KDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHA 133
++DLG+ +DL+ K YA + +I+L P D LL + P+ + ++
Sbjct: 58 IDNDLGMPLDLMQIPGLLNRQDKKFLYALDGSIKLHPEDRVLLRD----PRVDRLTKTDM 113
Query: 134 RSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFA 193
V++LRRTEY+S+ T+ V A +G ++++ D ++ V+ +E TF
Sbjct: 114 SKVTFLRRTEYVSSSITQVDGGKKRGVNA-LGKRMRRD--SDEAILNASQIVEKVESTFE 170
Query: 194 DSKLPIEK--HYSKPNVTPVEIMPVYPDFKYW--KYPCAQVI----FDSDPAPVGRPIPA 245
+ ++K H K + V+ + PD Y +++ FD+
Sbjct: 171 STAKNLDKLQHPVKKKLKAVKTWSLLPDTASMDQNYFTLRLVGSAAFDAQEK-------- 222
Query: 246 QIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKL---------DQLSNLEYTDEQEY 296
+ +S A+ R V E E Y T + D L DQL+ + D + Y
Sbjct: 223 KKLALSTAIFRPVELEEDEWISMY---TTDGKDSENLKDDMERNLEDQLNADDIAD-KNY 278
Query: 297 EYKMAREYNWNVKSKSCKGYEE-------NYFLIVRDD---AVYYNELETRVRLSKRRQK 346
++K R+++ ++ +G N IV +D +Y L +R+ L +RR
Sbjct: 279 KFKRVRDFDMKHVKQAQEGISTINNEDGFNELAIVLNDERGIAFYKPLRSRIELRRRRVA 338
Query: 347 VGAAP-----NNTRLVVTHRPLNATEFRIQ-RLRERFLEPPN----EEEEEEDEEEEEEE 396
P N +L VT R E ++ LR ++ +P N +EEE + EE++E +
Sbjct: 339 DAIRPIVREHNIDQLNVTLRNATPKEANVRDHLRMKY-DPINFAAVDEEELDGEEQQETK 397
Query: 397 AEET-QQGET-TEAERQEG-EGGEREGGGEGENDN 428
+EE +GET EAE+ E +G E G +G ++N
Sbjct: 398 SEELPNEGETQNEAEKDEDIDGDINEAGEKGRDEN 432
>gi|118086455|ref|XP_001232309.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Gallus
gallus]
Length = 1005
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 442 SSRASSRSRSRSKSKSPAKRSRSGSAS--SRGSNKSDRSAKSDRSAKSDRSARSDRSDKS 499
++R+ S+ R KSKSP KRS+S + SR RS + +R +KS R+ DKS
Sbjct: 211 TARSKSKE--RRKSKSPCKRSKSQDQTRKSRSPMLKRRSQEKNRKSKSPPDDRNKADDKS 268
Query: 500 AASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDKSAS 559
+ +R +S +KSR +S S RS + ++ RS +R +R +DK
Sbjct: 269 KSRDRRKSPVVNESKSRDRGRKSKSPAELRSKSKDRRSRS-----KDRKSRRSETDK--- 320
Query: 560 NRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVS---RARSNRSRSA----SKSGSSA 612
++ +S S AS S NRS + G + RS+S R +S RSRS +S S
Sbjct: 321 DKKPIKSPSKDAS--SGKENRSPRRPGRSPKGRSLSPKPREKSRRSRSPLFNDRRSKQSK 378
Query: 613 ASSRSGSPA 621
+ SR+ SPA
Sbjct: 379 SPSRTRSPA 387
>gi|13506761|gb|AAK28322.1|AF230482_1 tight junction protein ZO-1 [Hydra vulgaris]
Length = 1695
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 429 EKRTSDAEHSS--KNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKS-DRSAKSDRSA 485
E+ + HSS K S + R RSKS+ ++ G SSR NKS + +A +DRS
Sbjct: 145 EQESGKKHHSSHQKEDDHDSEKPRHRSKSR---EKGEEGEKSSRSHNKSLEDNADTDRSE 201
Query: 486 KSDRSARSDR-----SDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSD 540
+S RS +R DKS S+RSRS + N RS S + + KS +S
Sbjct: 202 RSHRSRSKNREDSEGGDKSEKSHRSRSKNREDNAEGEKSHRSRSKNREDAETGEKSEKSH 261
Query: 541 KSAASNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSN 600
+S + NR G S+RSRSR+ + + +RS N+ + +S+ R++S
Sbjct: 262 RSRSKNREDAETGEKSEKSHRSRSRNREDAETGEKSHRSRSKNREDPETEEKSL-RSKSK 320
Query: 601 RSRSASKSGSSAASSR 616
SK+ S S +
Sbjct: 321 TREDLSKTTESEKSEK 336
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.305 0.121 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,157,549,133
Number of Sequences: 23463169
Number of extensions: 400826366
Number of successful extensions: 6919499
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 44025
Number of HSP's successfully gapped in prelim test: 89216
Number of HSP's that attempted gapping in prelim test: 4205648
Number of HSP's gapped (non-prelim): 1260441
length of query: 624
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 475
effective length of database: 8,863,183,186
effective search space: 4210012013350
effective search space used: 4210012013350
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 80 (35.4 bits)