BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6664
(624 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4U0S5|PAF1_DANRE RNA polymerase II-associated factor 1 homolog OS=Danio rerio
GN=paf1 PE=1 SV=1
Length = 503
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/381 (60%), Positives = 277/381 (72%), Gaps = 11/381 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S H T VP RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SAHRT-VP-----ERSGVVCRVKYGNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + NI LDPADEKLLEE+I
Sbjct: 53 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRIDPNILLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE++PV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQIAAIEKTFEDAQKSISQHYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK D L+Y E+ YEYK+
Sbjct: 232 VSAPAGVDMMSQAMIRGMMDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR KVGA + N LV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSSTNAVLVC 351
Query: 359 THRPLNATEFRIQRLRERFLE 379
HR +N E Q R+ LE
Sbjct: 352 KHRDMNEKELEAQEARKAQLE 372
>sp|Q5RAX0|PAF1_PONAB RNA polymerase II-associated factor 1 homolog OS=Pongo abelii
GN=PAF1 PE=2 SV=1
Length = 533
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 306/449 (68%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>sp|Q8K2T8|PAF1_MOUSE RNA polymerase II-associated factor 1 homolog OS=Mus musculus
GN=Paf1 PE=2 SV=1
Length = 535
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE+E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
G +E++R+EG E ++ G GE E
Sbjct: 412 EHSG--SESDREEGDRDEASDKSGSGEDE 438
>sp|Q2KJ14|PAF1_BOVIN RNA polymerase II-associated factor 1 homolog OS=Bos taurus GN=PAF1
PE=2 SV=1
Length = 532
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEP-------------------PNEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGASDEEREKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E+ER+EG E ++ G GE E
Sbjct: 412 ERSG--SESEREEGDRDEASDKSGSGEDE 438
>sp|Q4V886|PAF1_RAT RNA polymerase II-associated factor 1 homolog OS=Rattus norvegicus
GN=Paf1 PE=2 SV=1
Length = 535
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/449 (54%), Positives = 305/449 (67%), Gaps = 35/449 (7%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEE 399
HR +N E Q R+ LE ++EE E+ E+E +E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEHEKGSSSEKEGSED 411
Query: 400 TQQGETTEAERQEG---EGGEREGGGEGE 425
+ G +E++R+EG E ++ G GE E
Sbjct: 412 ERSG--SESDREEGDRDEASDKSGSGEDE 438
>sp|Q6P2Y1|PAF1_XENTR RNA polymerase II-associated factor 1 homolog OS=Xenopus tropicalis
GN=paf1 PE=2 SV=1
Length = 520
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/424 (57%), Positives = 297/424 (70%), Gaps = 18/424 (4%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDIADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ PI +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFEDAQKPISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGSAALDMMSQAMIRGMMDEEGNQFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR ++ E Q R LE EEEEE E ++E + + + GE +G G E+
Sbjct: 352 KHRDMHEKELEAQEARRAQLENHEPEEEEEIEVDQETQGSDAEDGE-------KGSGSEK 404
Query: 419 EGGG 422
EG G
Sbjct: 405 EGSG 408
>sp|Q8N7H5|PAF1_HUMAN RNA polymerase II-associated factor 1 homolog OS=Homo sapiens
GN=PAF1 PE=1 SV=2
Length = 531
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/446 (55%), Positives = 305/446 (68%), Gaps = 28/446 (6%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR +N E Q R+ LE E +EEEEEE E ++ ++ E+++G E+
Sbjct: 352 KHRDMNEKELEAQEARKAQLE-----NHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEK 406
Query: 419 EGGGEGENDNEKRTSDAEHSSKNSSR 444
EG S+ EHS S R
Sbjct: 407 EG------------SEDEHSGSESER 420
>sp|A2BD83|PAF1_XENLA RNA polymerase II-associated factor 1 homolog OS=Xenopus laevis
GN=paf1 PE=2 SV=1
Length = 524
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/422 (56%), Positives = 295/422 (69%), Gaps = 11/422 (2%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDFADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFDDAQKDISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGTAALDMMSQAMIRGMMDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
HR ++ E Q R LE EEEEE E + + + + ++GE +EG G E+
Sbjct: 352 KHRDMHEKELEAQEARRAQLENHEPEEEEEIEVDRDTQGSDAEEGEKGSGSEKEGSGAEQ 411
Query: 419 EG 420
G
Sbjct: 412 SG 413
>sp|P90783|PAF1_CAEEL RNA polymerase II-associated factor 1 homolog OS=Caenorhabditis
elegans GN=C55A6.9 PE=3 SV=2
Length = 425
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 192/331 (58%), Gaps = 6/331 (1%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFEST-RFIEYKSTSLERNYKYEVLTEHDLGVT 91
R+ + + + ++ NT+PD+PFD KF+ PF RF+E++ ++ R+YK+ V+ + D+G+
Sbjct: 15 RKVDFMLKPRFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPAAIYRDYKHAVICDDDMGLN 74
Query: 92 IDLINKDTYAPN-YNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
+DLI+ Y + ++D D LLE+D +KRS+ H++ V W+R+TEYISTE
Sbjct: 75 VDLIDLKKYDEDPIETEIDEKDNILLEDDGAAKLIAKRSQQHSKLVPWMRKTEYISTEFN 134
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + P+++HYSK V
Sbjct: 135 RFG-VTADRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVKEHYSKKGVKA 193
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYF 270
VE V+PDF +WK+ A V FD D + ++ ++ + M+ ++F A F
Sbjct: 194 VEESFVFPDFDHWKHLFAHVQFDGDTITTEFEEEDERQQARESSVIKAMEFEDQKFAAVF 253
Query: 271 LPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVY 330
+PT L D + ++ +YE+ ++REY + ++ + + + + R++
Sbjct: 254 VPTIGCLTSFMDDLELERPFDEDMKYEFLLSREYTFKMEHLPPRD-RDVFIMYHRNNVFQ 312
Query: 331 YNELETRVRLSKRRQKVGAAPNNTRLVVTHR 361
YNE++ V+++ R+ A ++L +T+R
Sbjct: 313 YNEVDCNVKMT--RKPKMALSRKSKLTLTYR 341
>sp|P19246|NFH_MOUSE Neurofilament heavy polypeptide OS=Mus musculus GN=Nefh PE=1 SV=3
Length = 1090
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 447 SRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDKSAASNRS- 505
++SR + ++KSP + G A S KS AKS AKS A+S KS A +S
Sbjct: 513 TKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSP 572
Query: 506 -RSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDKSASNRSRS 564
+ S A KS + G A S A S +S A S A+S KS +
Sbjct: 573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 632
Query: 565 RSASSQASNNSAASNRSSNKSGSRSRSRSVSRARS 599
A S A+ S +S +++ S + ++S + A+S
Sbjct: 633 AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 667
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
Query: 416 GEREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKS 475
GE + GE ++ E + S E S +++ ++S ++ KSPA+ A S KS
Sbjct: 525 GEAKSPGEAKSPAEAK-SPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKS 583
Query: 476 DRSAKSDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNK 535
+ KS AKS A+S KS A +S A KS ++ A S A S
Sbjct: 584 PATVKSPGEAKSPSEAKSPAEAKSPAEAKS----PAEAKSPAEAKSPAEAKSPAEAKSPA 639
Query: 536 SVRSDKSAASNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVS 595
+V+S A S A+S KS + A S A S A +S ++ S + +S +
Sbjct: 640 TVKSPGEAKSPSEAKSPAEAKSPAE------AKSPAEAKSPAEVKSPGEAKSPAEPKSPA 693
Query: 596 RARS 599
A+S
Sbjct: 694 EAKS 697
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Query: 433 SDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSAR 492
S +E S +++ + ++S +++KSPA+ A S KS + KS AKS A+
Sbjct: 595 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Query: 493 SDRSDKSAASNRS--RSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSAR 550
S KS A +S + S A KS + S A S V+S A S +
Sbjct: 655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK 714
Query: 551 SDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARS 599
S G KS + A S A+ S +S ++ S + ++S + A+S
Sbjct: 715 SPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKS 763
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 417 EREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSR---SKSKSPAKRSRSGSASSRGSN 473
+RE E D E++ +A + R SRS R ++ +P ++ S S + S
Sbjct: 1173 DRERNRESSYDKERKNRNAVAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSR 1232
Query: 474 KSDRSAK---SDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDR 529
+ DRS++ SDR +SDR RSDR ++S RS G + RSDR + S +R
Sbjct: 1233 RGDRSSRNERSDRGERSDRGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKER 1291
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 434 DAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSA-R 492
D E NSS R R+R S +++R+ A R K DRS +R + SA R
Sbjct: 1162 DRERKRGNSS--YDRERNRESSYDKERKNRNAVAHDR-QRKRDRSRSYERPTIRENSAPR 1218
Query: 493 SDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSD 552
R + S + SR G +S RSDR SDR S++ RSD+ S+R RSD
Sbjct: 1219 EKRMESSRSEKDSRRGDRSSRNERSDRGER----SDRGERSDRGERSDRGERSDRGERSD 1274
Query: 553 GSDKSASNRSRSRS 566
++S + RSR+
Sbjct: 1275 RGERSDREKERSRA 1288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.121 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,036,866
Number of Sequences: 539616
Number of extensions: 9651009
Number of successful extensions: 184611
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3019
Number of HSP's successfully gapped in prelim test: 3439
Number of HSP's that attempted gapping in prelim test: 77389
Number of HSP's gapped (non-prelim): 47680
length of query: 624
length of database: 191,569,459
effective HSP length: 124
effective length of query: 500
effective length of database: 124,657,075
effective search space: 62328537500
effective search space used: 62328537500
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 64 (29.3 bits)