Query psy6664
Match_columns 624
No_of_seqs 187 out of 250
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 23:58:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03985 Paf1: Paf1 ; InterPr 100.0 6.6E-88 1.4E-92 734.5 26.2 355 35-395 1-382 (436)
2 KOG2478|consensus 100.0 4.1E-81 8.9E-86 664.1 18.9 367 29-395 10-378 (452)
3 KOG4368|consensus 96.8 0.0019 4.2E-08 72.5 6.4 20 356-375 527-546 (757)
4 KOG2478|consensus 96.7 0.00015 3.3E-09 79.5 -2.9 235 35-277 186-435 (452)
5 KOG4368|consensus 96.3 0.006 1.3E-07 68.7 5.7 9 209-217 315-323 (757)
6 KOG4676|consensus 93.7 0.047 1E-06 59.4 3.1 14 135-148 47-60 (479)
7 KOG2548|consensus 92.1 0.076 1.6E-06 59.6 2.0 6 189-194 138-143 (653)
8 KOG4207|consensus 91.6 1 2.3E-05 45.8 9.1 12 353-364 75-86 (256)
9 KOG2548|consensus 87.6 0.75 1.6E-05 52.0 5.0 6 91-96 73-78 (653)
10 KOG0835|consensus 77.3 3.8 8.3E-05 44.3 5.2 11 364-374 214-224 (367)
11 KOG0151|consensus 57.9 9.3 0.0002 45.1 3.5 25 37-61 265-289 (877)
12 PTZ00415 transmission-blocking 52.4 3.6 7.9E-05 52.4 -0.9 19 252-270 28-47 (2849)
13 KOG0107|consensus 50.5 33 0.00071 34.5 5.4 14 334-347 75-88 (195)
14 KOG0835|consensus 50.4 20 0.00044 39.0 4.3 12 262-273 204-215 (367)
15 KOG1847|consensus 47.2 53 0.0011 38.8 7.2 19 129-147 213-231 (878)
16 KOG1847|consensus 36.3 26 0.00057 41.1 2.7 13 207-219 333-345 (878)
17 PF09816 EAF: RNA polymerase I 28.0 4.6E+02 0.01 23.8 9.1 87 225-345 19-107 (109)
18 KOG0151|consensus 25.0 96 0.0021 37.2 4.7 17 182-198 514-530 (877)
19 PF03985 Paf1: Paf1 ; InterPr 23.5 50 0.0011 37.1 2.1 17 331-347 336-352 (436)
20 KOG1832|consensus 21.7 34 0.00074 41.8 0.4 27 200-226 1148-1175(1516)
21 KOG2888|consensus 21.7 89 0.0019 34.3 3.4 26 199-224 148-176 (453)
No 1
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=100.00 E-value=6.6e-88 Score=734.53 Aligned_cols=355 Identities=45% Similarity=0.752 Sum_probs=297.7
Q ss_pred ccceeeccccCCCCCCCCCCceeeCCC-CCcccccccCcceeecccccccc--cccCCccccCC--------CCCCCCCC
Q psy6664 35 SELVCRVKYNNTLPDIPFDCKFIAYPF-ESTRFIEYKSTSLERNYKYEVLT--EHDLGVTIDLI--------NKDTYAPN 103 (624)
Q Consensus 35 qdfI~riRY~N~LP~PP~~PKfL~~p~-d~~r~~~Y~~tSLer~~~~~l~~--d~DLGmpIDLi--------~~~~Y~~d 103 (624)
|||||+|||+|+||+||||||||+||+ +..+|+.|.+|+|+++++|.|+| |+||||||||| |+..|..+
T Consensus 1 qd~i~~iry~N~LP~pp~~pK~L~~p~~~~~~~~~~~~tsL~~~~~~~~l~~~d~dlGmplDLi~~~g~~~~d~~~~~~~ 80 (436)
T PF03985_consen 1 QDFICRIRYRNNLPPPPFPPKFLDIPFTDEQRFSPYFATSLEREYKFNILVEVDADLGMPLDLIGIPGVFEGDPSAYNAP 80 (436)
T ss_pred CceeeeeeecCCCcccCCCCeeecCCCCchhccccchhhhHHHhcCcceecccccccCcccccccccCcccCChhhcCCC
Confidence 799999999999999999999999999 77999999999999999999977 99999999999 56666654
Q ss_pred C-CCCCChhhHhhccccCCCCcccccccccccccccccccccccccccccCCccchhhhhhcccccccccccccccCChH
Q psy6664 104 Y-NIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRD 182 (624)
Q Consensus 104 ~-~~~LdP~D~~LL~D~~~~p~~~krs~~~~~~VswLRRTEYIS~e~~r~~~~~~~~~Etk~g~~~kk~~~~e~~~~dre 182 (624)
. +++|||+|++||+|+.+. ++++.+.++|+|||||||||+++++++ ++....+++.|+++++..+.++++.|++
T Consensus 81 ~~~~~L~p~D~~LL~d~~~~----~~~~~~~~~VswLRrTeYiS~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 155 (436)
T PF03985_consen 81 PNNPPLDPEDRALLRDPGAL----KRSKPDAKNVSWLRRTEYISSEFTRKG-QSKEKSEAKRGRNVKKKFKEEELYNDRE 155 (436)
T ss_pred CCCCCCCHHHHHHhcCcccc----ccccCCcCCCcccccceeecccccccc-ccccchhhcccccccccccccccccCHH
Confidence 4 678999999999997654 377889999999999999999988776 5556778888998888777778899999
Q ss_pred HHHHHHHhhhhcccC--CcccCCCCCCceeeEeeccCCCccccCCCeeEEEEcCCCCCCCCCCh-hhhhhhhhceecccc
Q psy6664 183 SQVKAIEKTFADSKL--PIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIP-AQIEEMSQAMIRGVM 259 (624)
Q Consensus 183 sQi~aIEkTFe~akk--pllkHPtKpnLkaVev~PlLPD~~~w~~~y~~v~FD~dPa~~~~~~~-~~~~~ls~AIiRpv~ 259 (624)
+||++||+||++|++ ++++||+|||||||++|||||||++|++.|++|+||++|+....... ....++.++|++||.
T Consensus 156 ~qi~~Ie~tF~~a~~~~~~~~HPtK~~lk~Ve~~PllPD~~~~~~~y~~v~Fd~~P~~~~~~~~~~~~~~~~~~i~~p~~ 235 (436)
T PF03985_consen 156 SQIRAIEKTFEAAKKDLPRLKHPTKPNLKAVEVWPLLPDFDAWPNPYVQVKFDGDPAPDDKEKEEQEEQALQAAIFRPMD 235 (436)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCCeEEEEecCCCCchhcCCceEEEEECCCCccccccccchhHHHHhhhccCCCC
Confidence 999999999999999 56999999999999999999999999999999999999987665444 345677888999976
Q ss_pred cCCCceEEEEEccChhhHHHHhhhhhc------CCCCCCCCccccceeeeecceeeccCCCCccceEEEE-EeCCeeEee
Q psy6664 260 DESGEQFVAYFLPTAETLDKRKLDQLS------NLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI-VRDDAVYYN 332 (624)
Q Consensus 260 ~e~ge~fvaY~lP~~~~~~k~~~D~e~------~~d~~d~e~y~Yk~vReYd~~v~~~~~~~~ee~~~f~-fr~~~aYY~ 332 (624)
. +|++||+||||....+.+....+.. ..++++++.|.|+|||+|+|+|++....+++.+++|+ ++.++||||
T Consensus 236 ~-~~~~fvsy~lP~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~y~~vReY~~~~~~~~~~~~e~~i~f~~~~~k~ayY~ 314 (436)
T PF03985_consen 236 S-EGDQFVSYYLPDKEDAKELKEKLEKNSPDRDEEDDDDDEEYEYKRVREYEWSVQNEASKGYEENIFFVDFKQKAAYYY 314 (436)
T ss_pred C-CCcceeeEEecChhhhhHhHHhhhcccccccccccCCCceeeccceecccceeeccCCCCccceEEEEecCCCceEEe
Confidence 5 6778899999954443333332221 2244677899999999999999977777788888888 667999999
Q ss_pred eccceeeeccccccCCC-----CCCCceEEEEecCCCHHHHHHHHHhhhhcCCCCCCccchhHHHHHH
Q psy6664 333 ELETRVRLSKRRQKVGA-----APNNTRLVVTHRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEE 395 (624)
Q Consensus 333 pL~tRv~LrKrR~~~~~-----~~~~d~i~V~~R~~t~~E~~~~~~R~~~~E~~~e~~eeeeee~e~e 395 (624)
||.+||+|+|+|.+... ..++++|+|+||+||++|.++|+.+..+.++...+.++|+||++++
T Consensus 315 pI~~Rv~LrkrR~~~~~~~~~~~~~~d~i~V~~R~p~e~E~~~~~~~r~~~dp~~~~~~ee~eeeee~ 382 (436)
T PF03985_consen 315 PIETRVRLRKRRTNSKIRPKVREQRPDQITVKHRDPTEEEEAERDKRRAQLDPIEYEEEEEEEEEEEE 382 (436)
T ss_pred eccccceeeeeccccccccccccCCCceEEEEeCCCCHHHHHHHHHHHhhccCCCccccCcccccccc
Confidence 99999999999944332 3468999999999999999988877777777766655555444433
No 2
>KOG2478|consensus
Probab=100.00 E-value=4.1e-81 Score=664.07 Aligned_cols=367 Identities=50% Similarity=0.815 Sum_probs=330.4
Q ss_pred CCCCccccceeeccccCCCCCCCCCCceeeCCCCCcccccccCcceeecccccccccccCCccccCCCCCCCCCCCCCCC
Q psy6664 29 RPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQL 108 (624)
Q Consensus 29 ~~~~~rqdfI~riRY~N~LP~PP~~PKfL~~p~d~~r~~~Y~~tSLer~~~~~l~~d~DLGmpIDLi~~~~Y~~d~~~~L 108 (624)
..-+++++|||+|+|+|+||+||||||||.||+++.+|++|.+++|+.++++.+++|+|||||+|||+..+|..+++.-|
T Consensus 10 ~q~~rk~~~i~pvky~N~LP~pPfd~Kfl~yP~~p~~~~~y~~~~~~~q~k~~~i~d~dlg~pvdLi~~~~~~q~~~~~~ 89 (452)
T KOG2478|consen 10 RQPPRKNDFICPVKYTNPLPDPPFDPKFLTYPFPPPRFVQYQPTSLYKQFKHDLITDPDLGMPVDLINDPGYDQDPNSLL 89 (452)
T ss_pred CCCccccccccCcccCCCCCCCCCCcccccCCCCcchhhhcCccccccccccccccCCCCCCCccccCCccccCCchhhc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999987655455
Q ss_pred ChhhHhhccccCCCCcccccccccccccccccccccccccccccCCccchhhhhhcccccccccccccccCChHHHHHHH
Q psy6664 109 DPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAI 188 (624)
Q Consensus 109 dP~D~~LL~D~~~~p~~~krs~~~~~~VswLRRTEYIS~e~~r~~~~~~~~~Etk~g~~~kk~~~~e~~~~dresQi~aI 188 (624)
++.|..||.+.+.++-..+++++|...|+|||+||||+++.+|++.......+.+.|++++++...+.++.|+++||+||
T Consensus 90 ~~~d~~~L~~~~rall~~~R~~~h~~~vp~lrkteyiste~~r~~~~~~~~~~~k~~~~~~k~~~~~~~~~d~~~Qi~aI 169 (452)
T KOG2478|consen 90 DPADSKLLEPRERALLKDKRSQQHSKTVPWLRKTEYISTEFNRAKIEAHDNLELKKGRSLKKNSQKEEMYKDVESQIKAI 169 (452)
T ss_pred ccccccccChhhhccccccccccccccccchhhhHHHHHHHHhhhhhccCccchhhhhhcccccchhhcccchHHHHhhh
Confidence 55555555554444444457889999999999999999999998855546778899999999999999999999999999
Q ss_pred HhhhhcccCCcccCCCCCCceeeEeeccCCCccccCCCeeEEEEcCCCCCCCCCChhhhhhhhhceecccccCCCceEEE
Q psy6664 189 EKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVA 268 (624)
Q Consensus 189 EkTFe~akkpllkHPtKpnLkaVev~PlLPD~~~w~~~y~~v~FD~dPa~~~~~~~~~~~~ls~AIiRpv~~e~ge~fva 268 (624)
|+||+++.+||.+||+||+|+||++|||||||+||.+.|+||+||.+|+.........++.|..+||++|++++|++|++
T Consensus 170 ~~tF~d~~kpl~~Hpskpgv~pV~~~~vfPDts~~k~~~~qV~fD~dp~~~~~~~~~~le~~~~~~~~~~~~~e~e~fvs 249 (452)
T KOG2478|consen 170 EKTFEDVQKPLRQHPSKPGVKPVEVWPVFPDTSMWKHLFAQVIFDLDPAPSTKSTIAELESMNESIFRGPMDEEGEQFVS 249 (452)
T ss_pred hhhhhhhcchhhhCCCCCCceeeeecccCCChhhhhCcceEEEecCCCCcccccchHHHhhhchhheeccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999998777777777889999999999999999999
Q ss_pred EEccChhhHHHHhhhhhcCCCCCCCCccccceeeeecceeeccCCCCccceEEEEEeC-CeeEeeeccceeeeccccccC
Q psy6664 269 YFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKV 347 (624)
Q Consensus 269 Y~lP~~~~~~k~~~D~e~~~d~~d~e~y~Yk~vReYd~~v~~~~~~~~ee~~~f~fr~-~~aYY~pL~tRv~LrKrR~~~ 347 (624)
||||..+++.++..+++.+++++++.+|.|+++|+|+|++++.+.++|.++|||+++. ++|||++|.+||+|+|||++.
T Consensus 250 ~~~p~ee~~~~~~~~~e~~~l~~eddv~ey~~~R~y~~~mk~~a~~~~~~~~f~i~~~~~~v~yn~~~~rvrl~kr~vk~ 329 (452)
T KOG2478|consen 250 YFLPTEETLKKRLADLEEEMLRDEDDVYEYKIAREYDWNMKGKASKGYTENYFFINDEDNQVYYNELETRVRLMKRRVKA 329 (452)
T ss_pred eecCChhhhhhhhhhhhhcccccccchhhhhhhhcccchhccCCCccccceEEEEEecCCceeechHhhHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCC-CCceEEEEecCCCHHHHHHHHHhhhhcCCCCCCccchhHHHHHH
Q psy6664 348 GAAP-NNTRLVVTHRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEE 395 (624)
Q Consensus 348 ~~~~-~~d~i~V~~R~~t~~E~~~~~~R~~~~E~~~e~~eeeeee~e~e 395 (624)
+.+. ++++|+|+||++++.|+.+++++.+++|...++.+.||++++++
T Consensus 330 ~~~~~~i~~l~vs~r~~n~~e~~~~~~~~~~~e~~~~~~~~~Ee~e~e~ 378 (452)
T KOG2478|consen 330 GVSLNNIDKLEVSLRDLNSKELEAQDKNRRQLEVLGFELELEEEYEEEE 378 (452)
T ss_pred ccCcccccceeEeecCCCchHHHHHHHhhccccccccchhhhhhhHHHH
Confidence 8865 57999999999999999999999988887765555444444433
No 3
>KOG4368|consensus
Probab=96.83 E-value=0.0019 Score=72.52 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=12.0
Q ss_pred EEEEecCCCHHHHHHHHHhh
Q psy6664 356 LVVTHRPLNATEFRIQRLRE 375 (624)
Q Consensus 356 i~V~~R~~t~~E~~~~~~R~ 375 (624)
-.|+|+++...++.....|-
T Consensus 527 pl~Rled~~yk~ldpkdirl 546 (757)
T KOG4368|consen 527 PLVRLEDHEYKPLDPKDIRL 546 (757)
T ss_pred ccccccccccccCCHhhccC
Confidence 44566666666666555554
No 4
>KOG2478|consensus
Probab=96.74 E-value=0.00015 Score=79.54 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=155.2
Q ss_pred ccceeeccccCCCCCCCCC-CceeeCCCCC--cccccccCcceeecccccccccccCCccccCCCCCCCCCCC-CCCCCh
Q psy6664 35 SELVCRVKYNNTLPDIPFD-CKFIAYPFES--TRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNY-NIQLDP 110 (624)
Q Consensus 35 qdfI~riRY~N~LP~PP~~-PKfL~~p~d~--~r~~~Y~~tSLer~~~~~l~~d~DLGmpIDLi~~~~Y~~d~-~~~LdP 110 (624)
..+||.|.+.|-||++-+- -+|+.+-||. ..+..|.+..|+. .+.-|+++.+++.+.+++...+|.... ...|.+
T Consensus 186 kpgv~pV~~~~vfPDts~~k~~~~qV~fD~dp~~~~~~~~~~le~-~~~~~~~~~~~~e~e~fvs~~~p~ee~~~~~~~~ 264 (452)
T KOG2478|consen 186 KPGVKPVEVWPVFPDTSMWKHLFAQVIFDLDPAPSTKSTIAELES-MNESIFRGPMDEEGEQFVSYFLPTEETLKKRLAD 264 (452)
T ss_pred CCCceeeeecccCCChhhhhCcceEEEecCCCCcccccchHHHhh-hchhheeccccccchhhhheecCChhhhhhhhhh
Confidence 4569999999999999884 7788887765 5677777888887 778899999999999999998888743 357888
Q ss_pred hhHhhccccCCC-Ccc-cccccccccccccccccccccccccccCCccchhhhhhcccccccccccccccCChHHHHHHH
Q psy6664 111 ADEKLLEEDILT-PQD-SKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAI 188 (624)
Q Consensus 111 ~D~~LL~D~~~~-p~~-~krs~~~~~~VswLRRTEYIS~e~~r~~~~~~~~~Etk~g~~~kk~~~~e~~~~dresQi~aI 188 (624)
.+..+|.++... .-. .+.-....+.++|+-.|+|+.--...-.-+-...+++++.... -..+. - ..+.. |..|
T Consensus 265 ~e~~~l~~eddv~ey~~~R~y~~~mk~~a~~~~~~~~f~i~~~~~~v~yn~~~~rvrl~k-r~vk~-~--~~~~~-i~~l 339 (452)
T KOG2478|consen 265 LEEEMLRDEDDVYEYKIAREYDWNMKGKASKGYTENYFFINDEDNQVYYNELETRVRLMK-RRVKA-G--VSLNN-IDKL 339 (452)
T ss_pred hhhcccccccchhhhhhhhcccchhccCCCccccceEEEEEecCCceeechHhhHHHHhh-ccccc-c--cCccc-ccce
Confidence 888899875531 100 1222356778999999999987543211011112223222110 00000 0 11111 7889
Q ss_pred HhhhhcccCCcccCCCCCCceeeEeec-cCCCccccCCCeeEEEEcCCCCCCCCCChh-----hhhhhhhceeccccc--
Q psy6664 189 EKTFADSKLPIEKHYSKPNVTPVEIMP-VYPDFKYWKYPCAQVIFDSDPAPVGRPIPA-----QIEEMSQAMIRGVMD-- 260 (624)
Q Consensus 189 EkTFe~akkpllkHPtKpnLkaVev~P-lLPD~~~w~~~y~~v~FD~dPa~~~~~~~~-----~~~~ls~AIiRpv~~-- 260 (624)
|-||.+.+.- ..|-++++..+|++++ ++++++-+...+. .-|++.+....+..+. ....-+.++.+--..
T Consensus 340 ~vs~r~~n~~-e~~~~~~~~~~~e~~~~~~~~~Ee~e~e~~-~~~~~e~~~~se~~~~~~e~~~~ade~~~~~~e~~~~~ 417 (452)
T KOG2478|consen 340 EVSLRDLNSK-ELEAQDKNRRQLEVLGFELELEEEYEEEEQ-EEILGEPEEDSEFFGSEDEGIEDADESSASEKEYQQRG 417 (452)
T ss_pred eEeecCCCch-HHHHHHHhhccccccccchhhhhhhHHHHH-hhhccCchhccccccccccccccccccccccchhhhcc
Confidence 9999988653 5788999999999999 8999998888876 6688877764432111 111223344442111
Q ss_pred -CCCceEEEEEccChhhH
Q psy6664 261 -ESGEQFVAYFLPTAETL 277 (624)
Q Consensus 261 -e~ge~fvaY~lP~~~~~ 277 (624)
...+.+.+|.+|..+++
T Consensus 418 ~s~~~s~~as~~ps~de~ 435 (452)
T KOG2478|consen 418 ESTAESGSASDVPSLDEA 435 (452)
T ss_pred cchhhhcccCCCCCcccc
Confidence 12377889999987765
No 5
>KOG4368|consensus
Probab=96.26 E-value=0.006 Score=68.72 Aligned_cols=9 Identities=22% Similarity=0.087 Sum_probs=4.3
Q ss_pred eeeEeeccC
Q psy6664 209 TPVEIMPVY 217 (624)
Q Consensus 209 kaVev~PlL 217 (624)
+|+.-|+-.
T Consensus 315 hpqA~~~~~ 323 (757)
T KOG4368|consen 315 HPVAPWGQQ 323 (757)
T ss_pred CCCCCCCCC
Confidence 455555443
No 6
>KOG4676|consensus
Probab=93.73 E-value=0.047 Score=59.44 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=8.4
Q ss_pred cccccccccccccc
Q psy6664 135 SVSWLRRTEYISTE 148 (624)
Q Consensus 135 ~VswLRRTEYIS~e 148 (624)
.+.-+.||-||-..
T Consensus 47 ~~pv~sRtcyVkf~ 60 (479)
T KOG4676|consen 47 KIPVISRTCYVKFL 60 (479)
T ss_pred cCcceeeeEEEecc
Confidence 35566677776543
No 7
>KOG2548|consensus
Probab=92.15 E-value=0.076 Score=59.63 Aligned_cols=6 Identities=0% Similarity=-0.086 Sum_probs=2.4
Q ss_pred Hhhhhc
Q psy6664 189 EKTFAD 194 (624)
Q Consensus 189 EkTFe~ 194 (624)
+.-|-+
T Consensus 138 ~e~~ga 143 (653)
T KOG2548|consen 138 HERRGA 143 (653)
T ss_pred HHHhcc
Confidence 444433
No 8
>KOG4207|consensus
Probab=91.63 E-value=1 Score=45.81 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=6.2
Q ss_pred CceEEEEecCCC
Q psy6664 353 NTRLVVTHRPLN 364 (624)
Q Consensus 353 ~d~i~V~~R~~t 364 (624)
.|.++|.-|+|.
T Consensus 75 mDG~~ldgRelr 86 (256)
T KOG4207|consen 75 MDGAVLDGRELR 86 (256)
T ss_pred hcceeeccceee
Confidence 355555555553
No 9
>KOG2548|consensus
Probab=87.62 E-value=0.75 Score=52.01 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.5
Q ss_pred cccCCC
Q psy6664 91 TIDLIN 96 (624)
Q Consensus 91 pIDLi~ 96 (624)
-||+.|
T Consensus 73 ~idrFD 78 (653)
T KOG2548|consen 73 QIDRFD 78 (653)
T ss_pred hhhhhh
Confidence 344444
No 10
>KOG0835|consensus
Probab=77.32 E-value=3.8 Score=44.32 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=4.6
Q ss_pred CHHHHHHHHHh
Q psy6664 364 NATEFRIQRLR 374 (624)
Q Consensus 364 t~~E~~~~~~R 374 (624)
+.+|+.+.-++
T Consensus 214 ~k~eid~ic~~ 224 (367)
T KOG0835|consen 214 TKREIDEICYR 224 (367)
T ss_pred cHHHHHHHHHH
Confidence 44444443333
No 11
>KOG0151|consensus
Probab=57.89 E-value=9.3 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=16.3
Q ss_pred ceeeccccCCCCCCCCCCceeeCCC
Q psy6664 37 LVCRVKYNNTLPDIPFDCKFIAYPF 61 (624)
Q Consensus 37 fI~riRY~N~LP~PP~~PKfL~~p~ 61 (624)
||-+.---|+||+||+..-|=.+|-
T Consensus 265 ~ipp~~h~~~lp~p~s~Lpfnaqp~ 289 (877)
T KOG0151|consen 265 YIPPPLHEATLPPPPSNLPFNAQPG 289 (877)
T ss_pred cCCChhhhccCCCCccCCcccCCCC
Confidence 5555666677777777666655555
No 12
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=52.39 E-value=3.6 Score=52.41 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=11.4
Q ss_pred hcee-cccccCCCceEEEEE
Q psy6664 252 QAMI-RGVMDESGEQFVAYF 270 (624)
Q Consensus 252 ~AIi-Rpv~~e~ge~fvaY~ 270 (624)
+||+ ++|.+++...|-.|+
T Consensus 28 ~~~~~~~~~~~~~~~~h~~~ 47 (2849)
T PTZ00415 28 NAIIGNGICDDEDKRFHLFI 47 (2849)
T ss_pred ceeecCCcccchhheeEEEe
Confidence 4565 677776666554443
No 13
>KOG0107|consensus
Probab=50.54 E-value=33 Score=34.51 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=8.0
Q ss_pred ccceeeeccccccC
Q psy6664 334 LETRVRLSKRRQKV 347 (624)
Q Consensus 334 L~tRv~LrKrR~~~ 347 (624)
..-+|+|...++..
T Consensus 75 ~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 75 SRIRVELSTGRPRG 88 (195)
T ss_pred ceEEEEeecCCccc
Confidence 34466666666553
No 14
>KOG0835|consensus
Probab=50.40 E-value=20 Score=38.98 Aligned_cols=12 Identities=17% Similarity=0.099 Sum_probs=7.3
Q ss_pred CCceEEEEEccC
Q psy6664 262 SGEQFVAYFLPT 273 (624)
Q Consensus 262 ~ge~fvaY~lP~ 273 (624)
...||-+|=+++
T Consensus 204 ~P~Wf~~Fd~~k 215 (367)
T KOG0835|consen 204 QPHWFKAFDTTK 215 (367)
T ss_pred CccHHHHcCCcH
Confidence 346777776643
No 15
>KOG1847|consensus
Probab=47.19 E-value=53 Score=38.77 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=13.2
Q ss_pred ccccccccccccccccccc
Q psy6664 129 SRHHARSVSWLRRTEYIST 147 (624)
Q Consensus 129 s~~~~~~VswLRRTEYIS~ 147 (624)
.+.....+-||+---||.-
T Consensus 213 KQ~~N~qFgFL~fDH~Lnp 231 (878)
T KOG1847|consen 213 KQGDNPQFGFLMFDHHLNP 231 (878)
T ss_pred ccCCCcccceeccccccCH
Confidence 3445577888888877764
No 16
>KOG1847|consensus
Probab=36.27 E-value=26 Score=41.10 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.0
Q ss_pred CceeeEeeccCCC
Q psy6664 207 NVTPVEIMPVYPD 219 (624)
Q Consensus 207 nLkaVev~PlLPD 219 (624)
.+.|++.+-|+|+
T Consensus 333 e~~~d~~~~i~p~ 345 (878)
T KOG1847|consen 333 EVNVDEKKQINPE 345 (878)
T ss_pred ccCcccceeecCc
Confidence 3444444455554
No 17
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=27.95 E-value=4.6e+02 Score=23.77 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=51.3
Q ss_pred CCeeEEEEcCCCCCCCCCChhhhhhhhhceecccccCCCceEEEEEccChhhHHHHhhhhhcCCCCCCCCccccceeeee
Q psy6664 225 YPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREY 304 (624)
Q Consensus 225 ~~y~~v~FD~dPa~~~~~~~~~~~~ls~AIiRpv~~e~ge~fvaY~lP~~~~~~k~~~D~e~~~d~~d~e~y~Yk~vReY 304 (624)
..|..|+|+-=|+..+...+ +.|.. ....+++.|.| |.... ......|.|+=.
T Consensus 19 ~~f~tirYnfKP~S~d~~~~--------~~l~~-~~~~~~~~l~~--~~~~~-------------~~~~~~~~f~G~--- 71 (109)
T PF09816_consen 19 PSFHTIRYNFKPASVDTSKP--------GTLYV-GSSNDEYTLTL--PNPNG-------------SGNNETYVFKGS--- 71 (109)
T ss_pred CCEEEEEcccCCCCCCCCCC--------eEEEe-cCCCCeEEEEE--eCCCC-------------CCCcccEEEEec---
Confidence 47999999887776544211 22211 13456777777 32111 001234665332
Q ss_pred cceeeccCCCCccceEEEEEeC--CeeEeeeccceeeeccccc
Q psy6664 305 NWNVKSKSCKGYEENYFLIVRD--DAVYYNELETRVRLSKRRQ 345 (624)
Q Consensus 305 d~~v~~~~~~~~ee~~~f~fr~--~~aYY~pL~tRv~LrKrR~ 345 (624)
+ ... -+..|+|+||+ +.+--.+|.+-|.|++.|.
T Consensus 72 ---~--~~~--~~~ecVLifD~~~~~f~LErl~s~~~~n~~R~ 107 (109)
T PF09816_consen 72 ---Q--RPS--KEKECVLIFDPETGEFVLERLSSTINLNKTRA 107 (109)
T ss_pred ---c--CCC--CCcEEEEEEECCCCEEEEEEcceEEEEEeecc
Confidence 1 111 12457899987 6688999999999999986
No 18
>KOG0151|consensus
Probab=25.02 E-value=96 Score=37.17 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhcccCC
Q psy6664 182 DSQVKAIEKTFADSKLP 198 (624)
Q Consensus 182 esQi~aIEkTFe~akkp 198 (624)
|.+|..|=..|.+.+..
T Consensus 514 Ea~L~~Ifd~l~~~yr~ 530 (877)
T KOG0151|consen 514 EATLEDIFDDLNDLYRS 530 (877)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555444443
No 19
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=23.45 E-value=50 Score=37.13 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=10.5
Q ss_pred eeeccceeeeccccccC
Q psy6664 331 YNELETRVRLSKRRQKV 347 (624)
Q Consensus 331 Y~pL~tRv~LrKrR~~~ 347 (624)
.-....+|.|+.|-+..
T Consensus 336 ~~~~~d~i~V~~R~p~e 352 (436)
T PF03985_consen 336 REQRPDQITVKHRDPTE 352 (436)
T ss_pred ccCCCceEEEEeCCCCH
Confidence 34556777777775544
No 20
>KOG1832|consensus
Probab=21.74 E-value=34 Score=41.82 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=12.5
Q ss_pred ccCCCCCC-ceeeEeeccCCCccccCCC
Q psy6664 200 EKHYSKPN-VTPVEIMPVYPDFKYWKYP 226 (624)
Q Consensus 200 lkHPtKpn-LkaVev~PlLPD~~~w~~~ 226 (624)
+..|.+-+ +.-...---=|+..+|.-.
T Consensus 1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred cccccCCcceeeeeccccCchHHHhccc
Confidence 44555543 2222222234667777543
No 21
>KOG2888|consensus
Probab=21.66 E-value=89 Score=34.27 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=19.1
Q ss_pred cccCCCCCCceeeEeecc---CCCccccC
Q psy6664 199 IEKHYSKPNVTPVEIMPV---YPDFKYWK 224 (624)
Q Consensus 199 llkHPtKpnLkaVev~Pl---LPD~~~w~ 224 (624)
||.|-.-|-+.||..|-| -|-.++|+
T Consensus 148 llnhtdSpYIRalGFmYiRYtqpp~dLw~ 176 (453)
T KOG2888|consen 148 LLNHTDSPYIRALGFMYIRYTQPPADLWD 176 (453)
T ss_pred HhhcCCchhhhhheeeEEeecCChhHHHH
Confidence 478888888888887765 46667764
Done!