Query psy6664
Match_columns 624
No_of_seqs 187 out of 250
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:59:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzz_A Protein-glutamine gamma 40.1 12 0.00042 32.5 2.0 26 32-57 17-42 (102)
2 3r8s_I 50S ribosomal protein L 19.2 1.4E+02 0.0047 27.6 5.1 24 45-68 16-39 (141)
3 3u5c_A 40S ribosomal protein S 9.1 77 0.0026 32.0 0.3 14 262-275 151-164 (252)
4 2q3z_A Transglutaminase 2; tra 7.1 1.8E+02 0.0061 33.4 2.2 27 31-57 597-623 (687)
5 1vjj_A Protein-glutamine gluta 6.9 1.8E+02 0.0061 33.4 2.1 27 31-57 604-630 (692)
6 3h4p_A Proteasome subunit alph 6.9 72 0.0025 31.8 -1.0 41 359-399 224-264 (264)
7 3bbo_G Ribosomal protein L4; l 6.7 1E+02 0.0035 31.7 0.0 26 385-410 265-290 (293)
8 3j21_k Acidic ribosomal protei 6.4 1.1E+02 0.0037 32.0 0.0 21 379-399 312-332 (339)
9 1g0d_A Protein-glutamine gamma 6.4 1.6E+02 0.0055 33.8 1.4 25 33-57 597-621 (695)
10 3cx5_F Cytochrome B-C1 complex 6.2 1.1E+02 0.0039 28.4 0.0 22 379-400 51-72 (146)
No 1
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=40.15 E-value=12 Score=32.52 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.6
Q ss_pred CccccceeeccccCCCCCCCCCCcee
Q psy6664 32 ERRSELVCRVKYNNTLPDIPFDCKFI 57 (624)
Q Consensus 32 ~~rqdfI~riRY~N~LP~PP~~PKfL 57 (624)
...+++.+.|.|+|+||.|.-++.|.
T Consensus 17 ~v~~~l~v~vsf~NPL~~~L~~c~~~ 42 (102)
T 2xzz_A 17 VVGQECEVQIVFKNPLPVTLTNVVFR 42 (102)
T ss_dssp CSSSCEEEEEEEECCSSSCBCSEEEE
T ss_pred ccCCeEEEEEEEECCCCCcccCEEEE
Confidence 45799999999999999999999985
No 2
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=19.18 E-value=1.4e+02 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceeeCCCCCccccc
Q psy6664 45 NTLPDIPFDCKFIAYPFESTRFIE 68 (624)
Q Consensus 45 N~LP~PP~~PKfL~~p~d~~r~~~ 68 (624)
..-|.||+.|+|=++..++..|++
T Consensus 16 ~A~p~PplgPaLG~~Gvni~~f~k 39 (141)
T 3r8s_I 16 MANPSPPVGPALGQQGVNIMEFCK 39 (141)
T ss_dssp SSSCTTTTCTTSSSSSCCSSSTTT
T ss_pred ccCCCCCcchhhccCCCCHHHHHH
Confidence 456999999999999999988886
No 3
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=9.06 E-value=77 Score=31.99 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=8.3
Q ss_pred CCceEEEEEccChh
Q psy6664 262 SGEQFVAYFLPTAE 275 (624)
Q Consensus 262 ~ge~fvaY~lP~~~ 275 (624)
+.-.++.|-+|.++
T Consensus 151 ~~p~~VD~~IP~Nd 164 (252)
T 3u5c_A 151 SPSEFVDVAIPCNN 164 (252)
T ss_dssp CCCTTCSSEEECCT
T ss_pred CCcccCCEEEeCCC
Confidence 34455677777654
No 4
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=7.12 E-value=1.8e+02 Score=33.42 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.0
Q ss_pred CCccccceeeccccCCCCCCCCCCcee
Q psy6664 31 AERRSELVCRVKYNNTLPDIPFDCKFI 57 (624)
Q Consensus 31 ~~~rqdfI~riRY~N~LP~PP~~PKfL 57 (624)
....+++.+.|.|+|+||.|.-+|.|.
T Consensus 597 ~~v~~~~~v~v~f~NPL~~~L~~c~~~ 623 (687)
T 2q3z_A 597 PKQKRKLVAEVSLQNPLPVALEGCTFT 623 (687)
T ss_dssp CSSSSCEEEEEEEECCSSSCBCSEEEE
T ss_pred cccCCeEEEEEEEECCCCCcccceEEE
Confidence 455899999999999999999999875
No 5
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=6.95 E-value=1.8e+02 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCccccceeeccccCCCCCCCCCCcee
Q psy6664 31 AERRSELVCRVKYNNTLPDIPFDCKFI 57 (624)
Q Consensus 31 ~~~rqdfI~riRY~N~LP~PP~~PKfL 57 (624)
....+++.+.|.|+|+||.|.-+|.|.
T Consensus 604 ~~v~~~l~v~v~f~NPL~~~L~~c~~~ 630 (692)
T 1vjj_A 604 ARVRKPVNVQMLFSNPLDEPVRDCVLM 630 (692)
T ss_dssp CBTTSCEEEEEEEECCSSSCBCSEEEE
T ss_pred cccCCeEEEEEEEECCCCCcccceEEE
Confidence 456899999999999999999999975
No 6
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=6.87 E-value=72 Score=31.77 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=0.0
Q ss_pred EecCCCHHHHHHHHHhhhhcCCCCCCccchhHHHHHHHHHH
Q psy6664 359 THRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEE 399 (624)
Q Consensus 359 ~~R~~t~~E~~~~~~R~~~~E~~~e~~eeeeee~e~e~~~~ 399 (624)
.++-++.+|+...-......-++++++|||+-||-.|++++
T Consensus 224 ~~~~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (264)
T 3h4p_A 224 QFKKIPVEEIKKLIEKVKKKLNEENKKEEENREETKEKQEE 264 (264)
T ss_dssp EEEECCTTTTGGGTTTTTTSSSCC-----------------
T ss_pred cEEECCHHHHHHHHHHHHHhhhcchhhhhhhhhhhhhhccC
No 7
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=6.71 E-value=1e+02 Score=31.73 Aligned_cols=26 Identities=46% Similarity=0.697 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHhhhcccchhcc
Q psy6664 385 EEEEDEEEEEEEAEETQQGETTEAER 410 (624)
Q Consensus 385 ~eeeeee~e~e~~~~~~~~~~~~~~~ 410 (624)
+|+||+|||+|+.++..+++.++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (293)
T 3bbo_G 265 EDEDEEEEEEEEGEEVDDGVEDGTPE 290 (293)
T ss_dssp --------------------------
T ss_pred cccccchhhhccccccccccccCCCC
No 8
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=6.40 E-value=1.1e+02 Score=31.95 Aligned_cols=21 Identities=52% Similarity=0.591 Sum_probs=0.0
Q ss_pred CCCCCCccchhHHHHHHHHHH
Q psy6664 379 EPPNEEEEEEDEEEEEEEAEE 399 (624)
Q Consensus 379 E~~~e~~eeeeee~e~e~~~~ 399 (624)
+.+++++||||||+++++...
T Consensus 312 ~~~ee~eeeeee~~~e~~~~~ 332 (339)
T 3j21_k 312 KEEKVEEEKEDEEASEEEALA 332 (339)
T ss_dssp ---------------------
T ss_pred ccccccccccccccchhhHHH
No 9
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=6.40 E-value=1.6e+02 Score=33.80 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=0.0
Q ss_pred ccccceeeccccCCCCCCCCCCcee
Q psy6664 33 RRSELVCRVKYNNTLPDIPFDCKFI 57 (624)
Q Consensus 33 ~rqdfI~riRY~N~LP~PP~~PKfL 57 (624)
..+++.+.|.|+|+||.|.-++.|.
T Consensus 597 v~~~l~a~vsf~NPL~~~L~~c~~~ 621 (695)
T 1g0d_A 597 VWEPLTAYVSFTNPLPVPLKGGVFT 621 (695)
T ss_dssp TTCCEEEEEEEECCSSSCEESCEEE
T ss_pred cCCeEEEEEEEECCCCCcccceEEE
No 10
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=6.21 E-value=1.1e+02 Score=28.39 Aligned_cols=22 Identities=41% Similarity=0.848 Sum_probs=0.0
Q ss_pred CCCCCCccchhHHHHHHHHHHh
Q psy6664 379 EPPNEEEEEEDEEEEEEEAEET 400 (624)
Q Consensus 379 E~~~e~~eeeeee~e~e~~~~~ 400 (624)
+..+++++++++++++++++++
T Consensus 51 ~~~ee~eeeeeeeeeeeeeEEE 72 (146)
T 3cx5_F 51 EDEDEDEDDDDDDDEDEEEEEE 72 (146)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Done!