Query psy6664
Match_columns 624
No_of_seqs 187 out of 250
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 23:59:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6664.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6664hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vjja3 b.1.5.1 (A:594-692) Tr 41.8 5.9 0.00043 32.3 2.3 29 31-59 11-39 (99)
2 d1g0da3 b.1.5.1 (A:584-684) Tr 39.2 4.3 0.00032 33.3 1.1 29 31-59 12-40 (101)
3 d2q3za3 b.1.5.1 (A:586-683) Tr 36.9 7.5 0.00054 31.6 2.2 29 31-59 12-40 (98)
4 d1ex0a3 b.1.5.1 (A:628-727) Tr 32.5 5.7 0.00041 32.5 0.7 29 31-59 13-41 (100)
5 d2bbaa1 b.18.1.4 (A:17-196) Ep 6.8 3.1E+02 0.022 24.0 5.6 52 208-274 39-103 (180)
6 d2gycg2 d.47.1.1 (G:2-72) Ribo 6.4 1.3E+02 0.0098 22.7 2.5 25 44-68 14-38 (71)
7 d1lmka1 b.1.1.1 (A:2-127) Immu 6.3 2.3E+02 0.017 23.4 4.2 34 326-366 54-88 (126)
8 d2nxyd1 b.1.1.1 (D:3001-3128) 5.6 2.9E+02 0.021 22.8 4.6 57 304-367 32-90 (128)
9 d1b2wh1 b.1.1.1 (H:1-117) Immu 5.2 1.8E+02 0.013 23.8 2.9 35 326-367 55-90 (117)
10 d1ad9b1 b.1.1.1 (B:1-113) Immu 4.6 3.6E+02 0.026 22.0 4.4 33 327-366 56-89 (120)
No 1
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=41.76 E-value=5.9 Score=32.30 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCccccceeeccccCCCCCCCCCCceeeC
Q psy6664 31 AERRSELVCRVKYNNTLPDIPFDCKFIAY 59 (624)
Q Consensus 31 ~~~rqdfI~riRY~N~LP~PP~~PKfL~~ 59 (624)
....+++.+.|.|+|+||.|--++.|.--
T Consensus 11 ~~v~~~~~v~vsf~NPL~~~L~~c~f~vE 39 (99)
T d1vjja3 11 ARVRKPVNVQMLFSNPLDEPVRDCVLMVE 39 (99)
T ss_dssp CBTTSCEEEEEEEECCSSSCBCSEEEEEE
T ss_pred cCcCCeEEEEEEEECCCCCchhCEEEEEE
Confidence 34679999999999999999988888644
No 2
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=39.23 E-value=4.3 Score=33.29 Aligned_cols=29 Identities=24% Similarity=0.137 Sum_probs=24.4
Q ss_pred CCccccceeeccccCCCCCCCCCCceeeC
Q psy6664 31 AERRSELVCRVKYNNTLPDIPFDCKFIAY 59 (624)
Q Consensus 31 ~~~rqdfI~riRY~N~LP~PP~~PKfL~~ 59 (624)
....+++.+.|.|+|+||.|.-++.|.--
T Consensus 12 ~~v~~~~~v~vsf~NPL~~~L~~c~~~vE 40 (101)
T d1g0da3 12 AVVWEPLTAYVSFTNPLPVPLKGGVFTLE 40 (101)
T ss_dssp EETTCCEEEEEEEECCSSSCEESCEEEEE
T ss_pred cCcCCeEEEEEEEECCCCCeecCEEEEEE
Confidence 44678999999999999999888887543
No 3
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=36.94 E-value=7.5 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCccccceeeccccCCCCCCCCCCceeeC
Q psy6664 31 AERRSELVCRVKYNNTLPDIPFDCKFIAY 59 (624)
Q Consensus 31 ~~~rqdfI~riRY~N~LP~PP~~PKfL~~ 59 (624)
....+++.+.|.|+|+||.|--++.|.--
T Consensus 12 ~~vg~~~~v~vsF~NPL~~~L~~c~~~vE 40 (98)
T d2q3za3 12 PKQKRKLVAEVSLQNPLPVALEGCTFTVE 40 (98)
T ss_dssp CSSSSCEEEEEEEECCSSSCBCSEEEEEE
T ss_pred cCcCCeEEEEEEEECCCCCchhCEEEEEE
Confidence 34679999999999999999988888544
No 4
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=32.47 E-value=5.7 Score=32.52 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=24.4
Q ss_pred CCccccceeeccccCCCCCCCCCCceeeC
Q psy6664 31 AERRSELVCRVKYNNTLPDIPFDCKFIAY 59 (624)
Q Consensus 31 ~~~rqdfI~riRY~N~LP~PP~~PKfL~~ 59 (624)
....+++.+.|.|+|+||.|--++.|.--
T Consensus 13 ~~v~~~~~v~v~F~NPL~~~L~nc~~~vE 41 (100)
T d1ex0a3 13 QVVGSDMTVTVQFTNPLKETLRNVWVHLD 41 (100)
T ss_dssp CBTTSCEEEEEEEECCSSSCEEEEEEEEE
T ss_pred cccCCeEEEEEEEECCCCCchhCEEEEEE
Confidence 34679999999999999999888887653
No 5
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.78 E-value=3.1e+02 Score=24.04 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=34.4
Q ss_pred ceeeEeeccC--CCccccCC-----------CeeEEEEcCCCCCCCCCChhhhhhhhhceecccccCCCceEEEEEccCh
Q psy6664 208 VTPVEIMPVY--PDFKYWKY-----------PCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTA 274 (624)
Q Consensus 208 LkaVev~PlL--PD~~~w~~-----------~y~~v~FD~dPa~~~~~~~~~~~~ls~AIiRpv~~e~ge~fvaY~lP~~ 274 (624)
+.--.|++|. |+.+.|-. .|+.++|. ..+|.-|.++...|-|.|-.||...+
T Consensus 39 irtYqVC~v~~~~~qnNWLrT~~I~r~~A~RiyVEl~Ft---------------vRdC~s~p~~~~sCKETFnLyy~esd 103 (180)
T d2bbaa1 39 VRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFT---------------MLECLSLPRAGRSCKETFTVFYYESD 103 (180)
T ss_dssp EEEEEEECSSSCTTCEEEEECCCEECTTCSSEEEEEEEE---------------EBCGGGSTTCCTTCCSEEEEEEEEES
T ss_pred eEEEEECCccCCCCCCceeecCCEecCCceEEEEEEEEE---------------EecccCCCCCCCcCcCeeeEEEEEec
Confidence 5666777875 67777732 25556662 23566676665668899988888543
No 6
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.35 E-value=1.3e+02 Score=22.68 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCceeeCCCCCccccc
Q psy6664 44 NNTLPDIPFDCKFIAYPFESTRFIE 68 (624)
Q Consensus 44 ~N~LP~PP~~PKfL~~p~d~~r~~~ 68 (624)
-..-|.||+.|-|=.+..+...|++
T Consensus 14 G~A~PaPPvGpaLG~~GiNi~~F~k 38 (71)
T d2gycg2 14 GMANPSPPVGPALGQQGVNIMEFCK 38 (71)
T ss_dssp TCCCSSSSTTTTTTSSSCCSSSSST
T ss_pred CCCCCCCCCcchhhhcCcCHHHHHH
Confidence 3567999999999999999888775
No 7
>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Probab=6.28 E-value=2.3e+02 Score=23.42 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=19.9
Q ss_pred CCeeEeee-ccceeeeccccccCCCCCCCceEEEEecCCCHH
Q psy6664 326 DDAVYYNE-LETRVRLSKRRQKVGAAPNNTRLVVTHRPLNAT 366 (624)
Q Consensus 326 ~~~aYY~p-L~tRv~LrKrR~~~~~~~~~d~i~V~~R~~t~~ 366 (624)
.+..||.| |..|+.+.+--.+ ..+.+.+..|+.+
T Consensus 54 ~~~~~y~~s~kgRfTiS~D~s~-------nt~yL~m~~L~~e 88 (126)
T d1lmka1 54 GGSNTYNDKFKGKATFTADTSS-------NIAYMQLSSLTSE 88 (126)
T ss_dssp TTEEEECGGGTTTEEEEEETTT-------TEEEEEECSCCGG
T ss_pred ccchhhhhhhccceEEEecCCc-------cEEEeeecccCCC
Confidence 35677777 5777777653322 2456666666544
No 8
>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
Probab=5.64 E-value=2.9e+02 Score=22.75 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=31.8
Q ss_pred ecce-eeccCCCCccceEEEEEeCCeeEeee-ccceeeeccccccCCCCCCCceEEEEecCCCHHH
Q psy6664 304 YNWN-VKSKSCKGYEENYFLIVRDDAVYYNE-LETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATE 367 (624)
Q Consensus 304 Yd~~-v~~~~~~~~ee~~~f~fr~~~aYY~p-L~tRv~LrKrR~~~~~~~~~d~i~V~~R~~t~~E 367 (624)
|.|. |.+.+-+++|-.-.|....+..+|.| |..|+.+.+--.+ ..+.+++..|+.+.
T Consensus 32 y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~-------~t~yL~~~sL~~eD 90 (128)
T d2nxyd1 32 YSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKST-------STVYLELRNLRSDD 90 (128)
T ss_dssp EEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT-------TEEEEEECSCCGGG
T ss_pred CCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCC-------ceEEeeeeeccccC
Confidence 4444 23344566643322323346778888 7889988874332 34666666665543
No 9
>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}
Probab=5.24 E-value=1.8e+02 Score=23.80 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=19.7
Q ss_pred CCeeEeee-ccceeeeccccccCCCCCCCceEEEEecCCCHHH
Q psy6664 326 DDAVYYNE-LETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATE 367 (624)
Q Consensus 326 ~~~aYY~p-L~tRv~LrKrR~~~~~~~~~d~i~V~~R~~t~~E 367 (624)
.+..||.| |..|+.+.+--.+ ..+.+++..|+.+.
T Consensus 55 ~~~t~y~~s~kgR~tisrD~s~-------~t~~L~~~sL~~eD 90 (117)
T d1b2wh1 55 DGEVHYNQDFKDRFTISRDKSK-------NTLYLQMNSLRPED 90 (117)
T ss_dssp TCCEEECHHHHTTEEEECCTTT-------TEEEEEECSCCGGG
T ss_pred cccccccccceeeEEEEecccc-------ceEEeeeccccCCc
Confidence 35567766 5667777663332 23556666665443
No 10
>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}
Probab=4.61 E-value=3.6e+02 Score=21.98 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=18.4
Q ss_pred CeeEeee-ccceeeeccccccCCCCCCCceEEEEecCCCHH
Q psy6664 327 DAVYYNE-LETRVRLSKRRQKVGAAPNNTRLVVTHRPLNAT 366 (624)
Q Consensus 327 ~~aYY~p-L~tRv~LrKrR~~~~~~~~~d~i~V~~R~~t~~ 366 (624)
+..||.| |..|+.+.+--.+ ..+.+.+..|+.+
T Consensus 56 ~~~~y~~s~kgRftiS~D~s~-------nt~~L~m~~L~~e 89 (120)
T d1ad9b1 56 GNTKYNEKFKGRATLTVDTST-------NTAYMELSSLRSE 89 (120)
T ss_dssp TEEEECGGGBTTEEEEEETTT-------TEEEEEECSCCGG
T ss_pred cceeeccceeeeEEEEecCcc-------eEEeccccccCCC
Confidence 5667766 6677777654332 2355555555443
Done!