Your job contains 1 sequence.
>psy6664
MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP
FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI
LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD
RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG
RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM
AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH
RPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG
GGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAK
SDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSD
KSAASNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSN
RSRSASKSGSSAASSRSGSPAGSD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6664
(624 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010750 - symbol:atms "antimeros" species:7227 "Dr... 1367 1.0e-139 1
ZFIN|ZDB-GENE-050506-101 - symbol:paf1 "paf1, RNA polymer... 1152 6.2e-117 1
UNIPROTKB|Q2KJ14 - symbol:PAF1 "RNA polymerase II-associa... 1136 3.1e-115 1
UNIPROTKB|Q8N7H5 - symbol:PAF1 "RNA polymerase II-associa... 1136 3.1e-115 1
UNIPROTKB|F1SEH0 - symbol:PAF1 "Uncharacterized protein" ... 1136 3.1e-115 1
UNIPROTKB|Q5RAX0 - symbol:PAF1 "RNA polymerase II-associa... 1136 3.1e-115 1
MGI|MGI:1923988 - symbol:Paf1 "Paf1, RNA polymerase II as... 1136 3.1e-115 1
RGD|1306219 - symbol:Paf1 "Paf1, RNA polymerase II associ... 1136 3.1e-115 1
UNIPROTKB|Q6P2Y1 - symbol:paf1 "RNA polymerase II-associa... 1128 2.2e-114 1
UNIPROTKB|G1K1Z2 - symbol:PAF1 "RNA polymerase II-associa... 1117 3.2e-113 1
UNIPROTKB|A2BD83 - symbol:paf1 "RNA polymerase II-associa... 1116 4.1e-113 1
UNIPROTKB|F8W9Q2 - symbol:PAF1 "RNA polymerase II-associa... 523 1.1e-99 2
UNIPROTKB|B4DGJ5 - symbol:PAF1 "RNA polymerase II-associa... 775 1.5e-79 2
WB|WBGene00008338 - symbol:C55A6.9 species:6239 "Caenorha... 528 8.3e-51 1
UNIPROTKB|P90783 - symbol:C55A6.9 "RNA polymerase II-asso... 528 8.3e-51 1
TAIR|locus:2017879 - symbol:ELF7 "AT1G79730" species:3702... 323 2.0e-28 1
POMBASE|SPAC664.03 - symbol:SPAC664.03 "RNA polymerase II... 161 8.5e-09 1
FB|FBgn0031388 - symbol:CG12674 species:7227 "Drosophila ... 137 2.0e-08 2
CGD|CAL0000306 - symbol:orf19.3613 species:5476 "Candida ... 150 1.5e-07 1
ASPGD|ASPL0000008906 - symbol:AN5910 species:162425 "Emer... 108 1.7e-05 2
SGD|S000000483 - symbol:PAF1 "Component of the Paf1p comp... 124 0.00010 1
>FB|FBgn0010750 [details] [associations]
symbol:atms "antimeros" species:7227 "Drosophila
melanogaster" [GO:0019894 "kinesin binding" evidence=IDA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE014297
GO:GO:0045893 GO:GO:0022008 GO:GO:0035327 GO:GO:0016593
eggNOG:NOG297168 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 GeneTree:ENSGT00390000001474 EMBL:AY070561
RefSeq:NP_649493.1 UniGene:Dm.1063 IntAct:Q9VN55 STRING:Q9VN55
EnsemblMetazoa:FBtr0078868 GeneID:40593 KEGG:dme:Dmel_CG2503
UCSC:CG2503-RA CTD:40593 FlyBase:FBgn0010750 InParanoid:Q9VN55
OMA:ENIEAKV OrthoDB:EOG4X0K7V GenomeRNAi:40593 NextBio:819560
Uniprot:Q9VN55
Length = 538
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 248/378 (65%), Positives = 311/378 (82%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
M PTI ++ + +EKR P R ER+SE++CRVKY N LPDIPFD KF+ YP
Sbjct: 1 MPPTINNSAVNSAAEKR---------PQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYP 51
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+S RF++Y TSLERN+KY+VLTEHDLGVT+DLIN++ Y + LDPADEKLLEE+
Sbjct: 52 FDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEET 111
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
LTP DS RSR H+R+VSWLR++EYISTEQTRFQPQ ++ +EAKVG+++KK+ +E+ LY+D
Sbjct: 112 LTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
R++Q+KAIEKTF+D+K I KHYSKPNV PVE++P++PDF WK+PCAQVIFDSDPAP G
Sbjct: 172 REAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAG 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
+ +PAQ+EEMSQAMIRGVMDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+
Sbjct: 232 KNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTH 360
AREYNWNVK+K+ KGYEENYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV H
Sbjct: 292 AREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKH 351
Query: 361 RPLNATEFRIQRLRERFL 378
RPL++ E R+QR RER L
Sbjct: 352 RPLDSMEHRMQRYRERQL 369
>ZFIN|ZDB-GENE-050506-101 [details] [associations]
symbol:paf1 "paf1, RNA polymerase II associated
factor, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007507 "heart
development" evidence=IMP] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] ZFIN:ZDB-GENE-050506-101 GO:GO:0007507 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0032968 GO:GO:0016593
GO:GO:0000993 CTD:54623 HOGENOM:HOG000115425 HOVERGEN:HBG053131
KO:K15174 OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:DQ022213 EMBL:BC139613 IPI:IPI00611430
RefSeq:NP_001019624.1 UniGene:Dr.70839 IntAct:Q4U0S5 STRING:Q4U0S5
PRIDE:Q4U0S5 GeneID:553020 KEGG:dre:553020 eggNOG:NOG245460
InParanoid:Q4U0S5 NextBio:20879918 Uniprot:Q4U0S5
Length = 503
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 230/377 (61%), Positives = 275/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S H T VP RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SAHRT-VP-----ERSGVVCRVKYGNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+E+LTE DLGVTIDLIN DTY + NI LDPADEKLLEE+I
Sbjct: 53 FDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLINPDTYRIDPNILLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +KVE K+G S+K+ F E+ +Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKVEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE++PV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQIAAIEKTFEDAQKSISQHYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
PA ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK D L+Y E+ YEYK+
Sbjct: 232 VSAPAGVDMMSQAMIRGMMDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I RD D VYYNELETRVRLSKRR KVGA + N LV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSSTNAVLVC 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>UNIPROTKB|Q2KJ14 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9913 "Bos taurus" [GO:0031442 "positive regulation of mRNA
3'-end processing" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=ISS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISS] [GO:0000993 "RNA polymerase II core binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISS] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 EMBL:BC105570 IPI:IPI00694741
RefSeq:NP_001039758.1 UniGene:Bt.13382 STRING:Q2KJ14 PRIDE:Q2KJ14
GeneID:528744 KEGG:bta:528744 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 InParanoid:Q2KJ14 KO:K15174
OrthoDB:EOG46HG9T NextBio:20874890 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 Uniprot:Q2KJ14
Length = 532
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/377 (59%), Positives = 274/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>UNIPROTKB|Q8N7H5 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0010390 "histone monoubiquitination" evidence=IDA] [GO:0033523
"histone H2B ubiquitination" evidence=IDA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IDA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISS] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000993 "RNA
polymerase II core binding" evidence=IDA] [GO:0045749 "negative
regulation of S phase of mitotic cell cycle" evidence=IMP]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0031442 "positive regulation of
mRNA 3'-end processing" evidence=IMP] [GO:0001711 "endodermal cell
fate commitment" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 GO:GO:0016055 GO:GO:0045944 GO:GO:0006378
EMBL:CH471126 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985 OMA:VEMMSQA
EMBL:AJ401156 EMBL:AK001985 EMBL:AK098423 EMBL:AC005239
EMBL:BC000017 EMBL:BC013402 IPI:IPI00300333 IPI:IPI00384593
RefSeq:NP_001243755.1 RefSeq:NP_061961.2 UniGene:Hs.466714
ProteinModelPortal:Q8N7H5 DIP:DIP-48673N IntAct:Q8N7H5
STRING:Q8N7H5 DMDM:182670295 PaxDb:Q8N7H5 PRIDE:Q8N7H5
Ensembl:ENST00000221265 GeneID:54623 KEGG:hsa:54623 UCSC:uc002old.3
GeneCards:GC19M039876 HGNC:HGNC:25459 HPA:HPA041875 MIM:610506
neXtProt:NX_Q8N7H5 PharmGKB:PA142671206 InParanoid:Q8N7H5
PhylomeDB:Q8N7H5 ChiTaRS:PAF1 GenomeRNAi:54623 NextBio:57158
ArrayExpress:Q8N7H5 Bgee:Q8N7H5 CleanEx:HS_PAF1
Genevestigator:Q8N7H5 Uniprot:Q8N7H5
Length = 531
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/377 (59%), Positives = 274/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>UNIPROTKB|F1SEH0 [details] [associations]
symbol:PAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] CTD:54623 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 GeneTree:ENSGT00390000001474
OMA:VEMMSQA EMBL:FP236263 RefSeq:XP_003359435.1 UniGene:Ssc.24777
Ensembl:ENSSSCT00000011713 Ensembl:ENSSSCT00000036353
GeneID:100514194 KEGG:ssc:100514194 Uniprot:F1SEH0
Length = 532
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/377 (59%), Positives = 274/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>UNIPROTKB|Q5RAX0 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0001711 "endodermal cell fate commitment" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016593
"Cdc73/Paf1 complex" evidence=ISS] [GO:0031442 "positive regulation
of mRNA 3'-end processing" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0045638 "negative regulation of myeloid
cell differentiation" evidence=ISS] [GO:0045749 "negative
regulation of S phase of mitotic cell cycle" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=ISS] GO:GO:0016055
GO:GO:0045944 GO:GO:0006378 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0045749 GO:GO:0032968 GO:GO:0031442
GO:GO:0016593 GO:GO:0000993 GO:GO:0001711 GO:GO:0045638 CTD:54623
HOVERGEN:HBG053131 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:CR858891 RefSeq:NP_001125634.1 UniGene:Pab.18319
PRIDE:Q5RAX0 GeneID:100172552 KEGG:pon:100172552 InParanoid:Q5RAX0
Uniprot:Q5RAX0
Length = 533
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/377 (59%), Positives = 274/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>MGI|MGI:1923988 [details] [associations]
symbol:Paf1 "Paf1, RNA polymerase II associated factor,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0000993 "RNA polymerase II core
binding" evidence=ISO] [GO:0001711 "endodermal cell fate
commitment" evidence=IMP] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0010390 "histone
monoubiquitination" evidence=ISO] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=ISO] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=ISO] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0033523 "histone H2B ubiquitination" evidence=ISO] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=ISO]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IDA]
MGI:MGI:1923988 GO:GO:0016055 GO:GO:0045944 GO:GO:0006378
GO:GO:0006351 GO:GO:0003682 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174 OrthoDB:EOG46HG9T
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OMA:VEMMSQA EMBL:AB041615
EMBL:AK017762 EMBL:AK134857 EMBL:AK148538 EMBL:BC029843
EMBL:BC083337 IPI:IPI00331654 RefSeq:NP_062331.2 UniGene:Mm.7916
ProteinModelPortal:Q8K2T8 IntAct:Q8K2T8 STRING:Q8K2T8
PhosphoSite:Q8K2T8 PaxDb:Q8K2T8 PRIDE:Q8K2T8
Ensembl:ENSMUST00000003529 GeneID:54624 KEGG:mmu:54624
UCSC:uc009fyu.1 InParanoid:Q8K2T8 NextBio:311440 Bgee:Q8K2T8
Genevestigator:Q8K2T8 Uniprot:Q8K2T8
Length = 535
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/377 (59%), Positives = 274/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>RGD|1306219 [details] [associations]
symbol:Paf1 "Paf1, RNA polymerase II associated factor, homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISO;ISS] [GO:0001711 "endodermal cell fate
commitment" evidence=ISO;ISS] [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=ISO;ISS] [GO:0010390 "histone monoubiquitination"
evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO;ISS]
[GO:0019827 "stem cell maintenance" evidence=IEA;ISO] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISO;ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISO;ISS] [GO:0033523 "histone
H2B ubiquitination" evidence=IEA;ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO;ISS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;ISS] [GO:0071222
"cellular response to lipopolysaccharide" evidence=ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] RGD:1306219 GO:GO:0016055
GO:GO:0045944 GO:GO:0006378 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0045749 GO:GO:0019827 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0000993 GO:GO:0001711 GO:GO:0045638 CTD:54623
eggNOG:NOG297168 HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OMA:VEMMSQA EMBL:BC097494
IPI:IPI00201279 RefSeq:NP_001020069.1 UniGene:Rn.161558
STRING:Q4V886 PhosphoSite:Q4V886 PRIDE:Q4V886
Ensembl:ENSRNOT00000026778 GeneID:361531 KEGG:rno:361531
UCSC:RGD:1306219 InParanoid:Q4V886 NextBio:676629
Genevestigator:Q4V886 Uniprot:Q4V886
Length = 535
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/377 (59%), Positives = 274/377 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLRE 375
HR +N E Q R+
Sbjct: 352 KHRDMNEKELEAQEARK 368
>UNIPROTKB|Q6P2Y1 [details] [associations]
symbol:paf1 "RNA polymerase II-associated factor 1 homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0000993 "RNA polymerase II core binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] GO:GO:0045944 GO:GO:0006351 GO:GO:0000122
GO:GO:0032968 GO:GO:0016593 GO:GO:0000993 CTD:54623
eggNOG:NOG297168 HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
EMBL:BC064253 RefSeq:NP_989348.1 UniGene:Str.20185
ProteinModelPortal:Q6P2Y1 STRING:Q6P2Y1 GeneID:394974
KEGG:xtr:394974 Xenbase:XB-GENE-5797651 InParanoid:Q6P2Y1
Uniprot:Q6P2Y1
Length = 520
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 226/376 (60%), Positives = 273/376 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDIADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ PI +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFEDAQKPISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP ET+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGSAALDMMSQAMIRGMMDEEGNQFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR ++ E Q R
Sbjct: 352 KHRDMHEKELEAQEAR 367
>UNIPROTKB|G1K1Z2 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9913 "Bos taurus" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0010390 "histone monoubiquitination" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001711 "endodermal cell fate commitment" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0045944 GO:GO:0006378
GO:GO:0071222 GO:GO:0000122 GO:GO:0045749 GO:GO:0019827
GO:GO:0032968 GO:GO:0033523 GO:GO:0010390 GO:GO:0031442
GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 GeneTree:ENSGT00390000001474
OMA:VEMMSQA EMBL:DAAA02047055 Ensembl:ENSBTAT00000027224
Uniprot:G1K1Z2
Length = 355
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 221/363 (60%), Positives = 268/363 (73%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + P++H T +P RS +VCRVKY N+LPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHR--PNSHRT-LP-----ERSGVVCRVKYCNSLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LDPADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+ +Y D
Sbjct: 113 QAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIGVSVKQQFTEEEIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+
Sbjct: 232 TSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVV 351
Query: 359 THR 361
HR
Sbjct: 352 KHR 354
>UNIPROTKB|A2BD83 [details] [associations]
symbol:paf1 "RNA polymerase II-associated factor 1 homolog"
species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0016593 "Cdc73/Paf1 complex" evidence=ISS] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] GO:GO:0045944 GO:GO:0006351 GO:GO:0000122
GO:GO:0032968 GO:GO:0016593 GO:GO:0000993 CTD:54623
HOVERGEN:HBG053131 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:BC130057 RefSeq:NP_001086458.1 UniGene:Xl.29705
GeneID:446278 KEGG:xla:446278 Xenbase:XB-GENE-5797702
Uniprot:A2BD83
Length = 524
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 224/376 (59%), Positives = 272/376 (72%)
Query: 1 MAPTIQTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYP 60
MAPTIQT + + S+H T VP RS +VCRVKY NTLPDIPFD KFI YP
Sbjct: 1 MAPTIQTQAQREDGHRS--SSHRT-VP-----ERSGVVCRVKYCNTLPDIPFDPKFITYP 52
Query: 61 FESTRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDI 120
F+ RF++YK+TSLE+ +K+++LTE DLGVTIDLIN DTY + N+ LD ADEKLLEE+I
Sbjct: 53 FDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVTLDFADEKLLEEEI 112
Query: 121 LTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMD 180
P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G S+K+ F E+++Y D
Sbjct: 113 QAPSSSKRSQQHAKVVPWMRKTEYISTEFNRYGVS-NEKPEVKIGVSVKQQFTEEDIYKD 171
Query: 181 RDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVG 240
RDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W PCAQVIFDSDPAP
Sbjct: 172 RDSQISAIEKTFDDAQKDISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKD 231
Query: 241 RPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKM 300
A ++ MSQAMIRG+MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+
Sbjct: 232 ASGTAALDMMSQAMIRGMMDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKI 291
Query: 301 AREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVV 358
AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLSKRR K G + N LVV
Sbjct: 292 AREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVV 351
Query: 359 THRPLNATEFRIQRLR 374
HR ++ E Q R
Sbjct: 352 KHRDMHEKELEAQEAR 367
>UNIPROTKB|F8W9Q2 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 GO:GO:0005634 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:AC005239 HGNC:HGNC:25459
ChiTaRS:PAF1 IPI:IPI01025379 ProteinModelPortal:F8W9Q2
Ensembl:ENST00000221266 UCSC:uc002ole.1 ArrayExpress:F8W9Q2
Bgee:F8W9Q2 Uniprot:F8W9Q2
Length = 462
Score = 523 (189.2 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 99/163 (60%), Positives = 127/163 (77%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKSTSLERNYKYEVLTEHDLGVTID 93
RS +VCRVKY N+LPDIPFD KFI YPF+ RF++YK+TSLE+ +K+++LTE DLGVTID
Sbjct: 16 RSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTID 75
Query: 94 LINKDTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQ 153
LIN DTY + N+ LDPADEKLLEE+I P SKRS+ HA+ V W+R+TEYISTE R+
Sbjct: 76 LINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYG 135
Query: 154 PQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK 196
+K E K+G S+K+ F E+ +Y DRDSQ+ AIEKTF D++
Sbjct: 136 IS-NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQ 177
Score = 486 (176.1 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 97/155 (62%), Positives = 110/155 (70%)
Query: 223 WKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKL 282
W PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK
Sbjct: 181 WINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKR 240
Query: 283 DQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLS 341
DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNELETRVRLS
Sbjct: 241 DQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLS 300
Query: 342 KRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 375
KRR K G + N LVV HR +N E Q R+
Sbjct: 301 KRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 335
>UNIPROTKB|B4DGJ5 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 GO:GO:0005634 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:AC005239 UniGene:Hs.466714
HGNC:HGNC:25459 ChiTaRS:PAF1 EMBL:AK294625 IPI:IPI00908865
STRING:B4DGJ5 Ensembl:ENST00000416728 Uniprot:B4DGJ5
Length = 288
Score = 775 (277.9 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 147/237 (62%), Positives = 178/237 (75%)
Query: 106 IQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVG 165
+ LDPADEKLLEE+I P SKRS+ HA+ V W+R+TEYISTE R+ +K E K+G
Sbjct: 45 VLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGIS-NEKPEVKIG 103
Query: 166 FSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKY 225
S+K+ F E+ +Y DRDSQ+ AIEKTF D++ I +HYSKP VTPVE+MPV+PDFK W
Sbjct: 104 VSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWIN 163
Query: 226 PCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQL 285
PCAQVIFDSDPAP A +E MSQAMIRG+MDE G QFVAYFLP ETL KRK DQ
Sbjct: 164 PCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQE 223
Query: 286 SNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRD-DAVYYNELETRVRLS 341
++Y + Y+YK+AREYNWNVK+K+ KGYEENYF I R+ D VYYNELET ++ S
Sbjct: 224 EEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETSIQYS 280
Score = 43 (20.2 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 9 SAGTPSEKRTPSTHSTPVPP 28
S TPS TPST + + P
Sbjct: 30 SPSTPSSSPTPSTRTVLLDP 49
>WB|WBGene00008338 [details] [associations]
symbol:C55A6.9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0010171 GO:GO:0040011
GO:GO:0006351 GO:GO:0040035 GO:GO:0016593 eggNOG:NOG297168
KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
EMBL:Z81051 PIR:T20261 RefSeq:NP_505925.1 ProteinModelPortal:P90783
DIP:DIP-27306N MINT:MINT-1084850 STRING:P90783 PaxDb:P90783
EnsemblMetazoa:C55A6.9 GeneID:179583 KEGG:cel:CELE_C55A6.9
UCSC:C55A6.9 CTD:179583 WormBase:C55A6.9
GeneTree:ENSGT00390000001474 HOGENOM:HOG000022517 InParanoid:P90783
OMA:VEMMSQA NextBio:906030 Uniprot:P90783
Length = 425
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 115/349 (32%), Positives = 206/349 (59%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFEST-RFIEYKSTSLERNYKYEVLTEHDLGVT 91
R+ + + + ++ NT+PD+PFD KF+ PF RF+E++ ++ R+YK+ V+ + D+G+
Sbjct: 15 RKVDFMLKPRFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPAAIYRDYKHAVICDDDMGLN 74
Query: 92 IDLINKDTYAPN-YNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
+DLI+ Y + ++D D LLE+D +KRS+ H++ V W+R+TEYISTE
Sbjct: 75 VDLIDLKKYDEDPIETEIDEKDNILLEDDGAAKLIAKRSQQHSKLVPWMRKTEYISTEFN 134
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + P+++HYSK V
Sbjct: 135 RFGVTA-DRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVKEHYSKKGVKA 193
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYF 270
VE V+PDF +WK+ A V FD D + ++ ++ + M+ ++F A F
Sbjct: 194 VEESFVFPDFDHWKHLFAHVQFDGDTITTEFEEEDERQQARESSVIKAMEFEDQKFAAVF 253
Query: 271 LPTAETLDKRKLDQLSNLE--YTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIV-RDD 327
+PT L +D L LE + ++ +YE+ ++REY + K + + + F++ R++
Sbjct: 254 VPTIGCLTSF-MDDLE-LERPFDEDMKYEFLLSREYTF--KMEHLPPRDRDVFIMYHRNN 309
Query: 328 AVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRER 376
YNE++ V+++ R+ K+ A ++L +T+R N +E + + +R
Sbjct: 310 VFQYNEVDCNVKMT-RKPKM-ALSRKSKLTLTYR--NPSELEQKDMNKR 354
>UNIPROTKB|P90783 [details] [associations]
symbol:C55A6.9 "RNA polymerase II-associated factor 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0016593
"Cdc73/Paf1 complex" evidence=ISS] GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0006355 GO:GO:0010171
GO:GO:0040011 GO:GO:0006351 GO:GO:0040035 GO:GO:0016593
eggNOG:NOG297168 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:Z81051 PIR:T20261 RefSeq:NP_505925.1
ProteinModelPortal:P90783 DIP:DIP-27306N MINT:MINT-1084850
STRING:P90783 PaxDb:P90783 EnsemblMetazoa:C55A6.9 GeneID:179583
KEGG:cel:CELE_C55A6.9 UCSC:C55A6.9 CTD:179583 WormBase:C55A6.9
GeneTree:ENSGT00390000001474 HOGENOM:HOG000022517 InParanoid:P90783
OMA:VEMMSQA NextBio:906030 Uniprot:P90783
Length = 425
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 115/349 (32%), Positives = 206/349 (59%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFEST-RFIEYKSTSLERNYKYEVLTEHDLGVT 91
R+ + + + ++ NT+PD+PFD KF+ PF RF+E++ ++ R+YK+ V+ + D+G+
Sbjct: 15 RKVDFMLKPRFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPAAIYRDYKHAVICDDDMGLN 74
Query: 92 IDLINKDTYAPN-YNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYISTEQT 150
+DLI+ Y + ++D D LLE+D +KRS+ H++ V W+R+TEYISTE
Sbjct: 75 VDLIDLKKYDEDPIETEIDEKDNILLEDDGAAKLIAKRSQQHSKLVPWMRKTEYISTEFN 134
Query: 151 RFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTP 210
RF D+ E K+G+++KKN + +++Y D+ SQ+ AI KTF D + P+++HYSK V
Sbjct: 135 RFGVTA-DRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVRKPVKEHYSKKGVKA 193
Query: 211 VEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYF 270
VE V+PDF +WK+ A V FD D + ++ ++ + M+ ++F A F
Sbjct: 194 VEESFVFPDFDHWKHLFAHVQFDGDTITTEFEEEDERQQARESSVIKAMEFEDQKFAAVF 253
Query: 271 LPTAETLDKRKLDQLSNLE--YTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIV-RDD 327
+PT L +D L LE + ++ +YE+ ++REY + K + + + F++ R++
Sbjct: 254 VPTIGCLTSF-MDDLE-LERPFDEDMKYEFLLSREYTF--KMEHLPPRDRDVFIMYHRNN 309
Query: 328 AVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRER 376
YNE++ V+++ R+ K+ A ++L +T+R N +E + + +R
Sbjct: 310 VFQYNEVDCNVKMT-RKPKM-ALSRKSKLTLTYR--NPSELEQKDMNKR 354
>TAIR|locus:2017879 [details] [associations]
symbol:ELF7 "AT1G79730" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009910 "negative regulation of flower
development" evidence=IMP] [GO:0016571 "histone methylation"
evidence=RCA;IMP] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] EMBL:CP002684
GO:GO:0009910 GO:GO:0016571 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 IPI:IPI00523920 RefSeq:NP_178091.2
UniGene:At.44777 PRIDE:F4HQA1 EnsemblPlants:AT1G79730.1
GeneID:844312 KEGG:ath:AT1G79730 OMA:RERAKPD Uniprot:F4HQA1
Length = 589
Score = 323 (118.8 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 102/363 (28%), Positives = 181/363 (49%)
Query: 6 QTTSAGTPSEKRTPSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTR 65
Q T +K TP + V R ++ + +C++K+ N LPD K + + +
Sbjct: 164 QMPKGHTEEKKPTPLLTTDRVENR-LKKPTTFICKLKFRNELPDPSAQLKLMTIKRDKDQ 222
Query: 66 FIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTY-APNYNIQLDPADEKLL-EEDILTP 123
F +Y TSLE+ +K ++ E DLG+ +DL++ Y P L P DE+LL ++D +TP
Sbjct: 223 FTKYTITSLEKLWKPKIFVEPDLGIPLDLLDLSVYNPPKVKAPLAPEDEELLRDDDAVTP 282
Query: 124 --QDS--KRSRHHARSVSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYM 179
+D ++ R + +SWL +T+YIS+ Q + + +AK +K +
Sbjct: 283 IKKDGIRRKERPTDKGMSWLVKTQYISSINNESARQSLTEKQAKELREMKGGINILHNLN 342
Query: 180 DRDSQVKAIEKTFADSKL-PIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAP 238
+R+ Q+K IE +F K P+ H + N+ PVE++P+ P F +Y V+ + D AP
Sbjct: 343 NRERQIKDIEASFEACKSRPV--HATNKNLQPVEVLPLLPYFD--RYDEQFVVANFDGAP 398
Query: 239 V------GRPIPA-QIEEMSQAMIRGVM----DESG-EQFVAYFLPTAETLDKRKLDQLS 286
+ G+ P+ + S+A+++ + D + E+F+AY +P+ LD+LS
Sbjct: 399 IADSEFFGKLDPSIRDAHESRAILKSYVVAGSDTANPEKFLAYMVPS--------LDELS 450
Query: 287 NLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVY-YNELETRVRLSKRRQ 345
+ + +E Y REY W+V+ + + +L+ D+ Y L R+ L K+R
Sbjct: 451 KDIHDENEEISYTWVREYLWDVQPNA---NDPGTYLVSFDNGTASYLPLPMRLNLRKKRA 507
Query: 346 KVG 348
+ G
Sbjct: 508 REG 510
>POMBASE|SPAC664.03 [details] [associations]
symbol:SPAC664.03 "RNA polymerase II associated Paf1
complex (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO]
[GO:0031060 "regulation of histone methylation" evidence=ISO]
PomBase:SPAC664.03 GO:GO:0005829 EMBL:CU329670 GO:GO:0006368
GO:GO:0016593 GO:GO:0031060 eggNOG:NOG297168 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 PIR:T50233 RefSeq:NP_593451.2
STRING:Q9US06 EnsemblFungi:SPAC664.03.1 GeneID:2543560
OrthoDB:EOG40S3R0 NextBio:20804568 Uniprot:Q9US06
Length = 456
Score = 161 (61.7 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 77/309 (24%), Positives = 138/309 (44%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFI--EYKSTSLERNYKYEVLTEHDLGV 90
RR + + RV+Y+N LP PF K I P ++ + ST ++ K + + +LG+
Sbjct: 4 RRQDYILRVRYHNPLPPPPFPPKLINIPNPVKQYALPNFVSTLVQEK-KIPIENDIELGM 62
Query: 91 TIDL------INKDT---YAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRR 141
+DL DT ++ ++ LDP D LL+ S H V +LRR
Sbjct: 63 PLDLAGITGFFEGDTSWMHSDLSSVNLDPIDRSLLKV-----AGGSGSTH--LEVPFLRR 115
Query: 142 TEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRD--SQVKAIEKTFADSKLPI 199
TEYIS+E R ++ ++ S K E R+ Q++AI ++F + P+
Sbjct: 116 TEYISSEVAR---AASNRGNLRLTASTSKALAEQRGRSLREVPKQLEAINESFDVVQQPL 172
Query: 200 E--KHYSKPNVTPVEIMPVYPDFKYW--KYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMI 255
E KH +KP++ PV + P+ ++ +V D ++E
Sbjct: 173 EQLKHPTKPDLKPVSAWNLLPNTSMAGIQHLMLRVADDLSERSHSYSSLVNLQEGHNLTK 232
Query: 256 RG----VMDES--GEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVK 309
R M S GE+F++Y+LP+ ET ++ + ++++ + + Y R ++ ++
Sbjct: 233 RHEVALFMPSSAEGEEFLSYYLPSEETAEEIQA-KVNDASADVHEPFVYNHFRNFDASMH 291
Query: 310 SKSCKGYEE 318
S G E+
Sbjct: 292 VNST-GLED 299
>FB|FBgn0031388 [details] [associations]
symbol:CG12674 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:AE014134 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:BT023581 RefSeq:NP_608644.1
UniGene:Dm.18415 IntAct:Q9VQ73 MINT:MINT-822364
EnsemblMetazoa:FBtr0077827 GeneID:33384 KEGG:dme:Dmel_CG12674
UCSC:CG12674-RA FlyBase:FBgn0031388 eggNOG:NOG249477
InParanoid:Q9VQ73 OMA:CKFLPCG OrthoDB:EOG4KWH8H GenomeRNAi:33384
NextBio:783283 Uniprot:Q9VQ73
Length = 314
Score = 137 (53.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 51/211 (24%), Positives = 97/211 (45%)
Query: 32 ERRSELVCRVKYNNTLPDIPFDCKFIAYPFESTRFIEYKST--SLERNYKYEVLTEHDLG 89
E ++ +C + Y N LP P DCKF+ + + + L+ + H+L
Sbjct: 14 EAHNQFICPIVYTNELPTYPKDCKFLPCGQNIQEYCKEPVSIPKLDTCFSLNFKGLHEL- 72
Query: 90 VTIDLINKDTYAP-NYNIQ-LDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEYIST 147
+++L+++ Y + N+Q ++P + LL++ D R +R+ + +
Sbjct: 73 FSVNLMDQSAYDKLSENVQPMNPREADLLKDIRALDWDFARLEP-SRAQECAKM---FAK 128
Query: 148 EQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKP- 206
E R P + ++ V ++ K K D + + Q I+ +F D P+ +H + P
Sbjct: 129 E--RVHPP-LPGLQRSV--AVPKAPK-DLQPVSLEQQKAMIDASFKDIGKPLYRHPTNPG 182
Query: 207 -NVTPVEIMPVYPDFKYWKYPCAQVIFDSDP 236
N PV+++PV+PD KY Q+ FD+ P
Sbjct: 183 SNAYPVQVLPVFPDTDLQKYSFVQMSFDNPP 213
Score = 58 (25.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 289 EYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVG 348
+ D E Y Y K+ E Y L +DA++Y ++ ++L + R +
Sbjct: 236 DIADSTEKVYVSDHRYR-EEKADDSLERGEGYILREENDAIFYVGVDKYIKLRRERPRPH 294
Query: 349 AAPNNTRLVVTHRPLNAT 366
+ N L V +N T
Sbjct: 295 VSANKFLLKVQRVGMNTT 312
>CGD|CAL0000306 [details] [associations]
symbol:orf19.3613 species:5476 "Candida albicans" [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000983 "RNA polymerase II
core promoter sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001089 "TFIIF-class binding
transcription factor activity" evidence=IEA] [GO:0000993 "RNA
polymerase II core binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0035327 "transcriptionally active chromatin" evidence=IEA]
[GO:2001255 "positive regulation of histone H3-K36 trimethylation"
evidence=IEA] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0001015 "snoRNA transcription from an RNA
polymerase II promoter" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0051569
"regulation of histone H3-K4 methylation" evidence=IEA] [GO:2001173
"regulation of histone H2B conserved C-terminal lysine
ubiquitination" evidence=IEA] [GO:0070911 "global genome
nucleotide-excision repair" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0000114 "regulation of transcription
involved in G1 phase of mitotic cell cycle" evidence=IEA]
[GO:0031938 "regulation of chromatin silencing at telomere"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0031126 "snoRNA 3'-end processing"
evidence=IEA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IEA]
[GO:2001165 "positive regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IEA]
CGD:CAL0000306 EMBL:AACQ01000103 EMBL:AACQ01000102 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
RefSeq:XP_714457.1 RefSeq:XP_714506.1 STRING:Q59Y36 GeneID:3643851
GeneID:3643910 KEGG:cal:CaO19.11096 KEGG:cal:CaO19.3613
eggNOG:KOG2478 Uniprot:Q59Y36
Length = 467
Score = 150 (57.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 58/209 (27%), Positives = 99/209 (47%)
Query: 34 RSELVCRVKYNNTLPDIPFDCKFIAY----PFESTRFIEYKSTSLERNYKYEVLTEH--- 86
R + + +V+Y N LP P + KFI Y P + + EY +SL R ++ L E
Sbjct: 11 RQDYIAKVRYTNNLPPPPLNPKFIEYNTTDPISTQQEGEYLISSLFRKENFQNLMERIDD 70
Query: 87 DLGVTIDLINKDTYAPNYNIQLDPADEKL--LEEDILTPQD---------SKRSRHHARS 135
LG+ ++LIN + + D +E + L+ + L P D K S++
Sbjct: 71 QLGLDLNLINNRGF-----LSEDKMNESVGKLKYNQLHPNDRALLRDAGIGKISKNEPE- 124
Query: 136 VSWLRRTEYISTEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFA-- 193
VS+LRRTEYIS ++ ++ +K+ +D + D DSQ++ +E++F
Sbjct: 125 VSFLRRTEYISDRPLSKGGNNLNTATEEI--KVKEKLSKDE-HFDADSQLQNVEESFTVA 181
Query: 194 -DSKLPIE--KHYSKPNVTPVEIMPVYPD 219
+S ++ KH K ++ V P+ PD
Sbjct: 182 NESLYDLKNIKHPKKKHLRAVNTWPLLPD 210
>ASPGD|ASPL0000008906 [details] [associations]
symbol:AN5910 species:162425 "Emericella nidulans"
[GO:0016593 "Cdc73/Paf1 complex" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000983 "RNA polymerase II
core promoter sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001089 "TFIIF-class binding
transcription factor activity" evidence=IEA] [GO:0000993 "RNA
polymerase II core binding" evidence=IEA] [GO:2001255 "positive
regulation of histone H3-K36 trimethylation" evidence=IEA]
[GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0001015 "snoRNA transcription from an RNA
polymerase II promoter" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0051569
"regulation of histone H3-K4 methylation" evidence=IEA] [GO:2001173
"regulation of histone H2B conserved C-terminal lysine
ubiquitination" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0070911 "global genome nucleotide-excision
repair" evidence=IEA] [GO:0000114 "regulation of transcription
involved in G1 phase of mitotic cell cycle" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0031938 "regulation of chromatin silencing at
telomere" evidence=IEA] [GO:0031126 "snoRNA 3'-end processing"
evidence=IEA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IEA]
[GO:2001165 "positive regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IEA]
EMBL:BN001301 EMBL:AACD01000101 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 RefSeq:XP_663514.1
EnsemblFungi:CADANIAT00007123 GeneID:2870903 KEGG:ani:AN5910.2
eggNOG:NOG147415 HOGENOM:HOG000163704 OMA:DPMEYEG OrthoDB:EOG4QZBVK
Uniprot:Q5B0M0
Length = 494
Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 58/203 (28%), Positives = 91/203 (44%)
Query: 36 ELVCRVKYNNTLPDIPFDCKFIAYPFEST-RFIEYK-STSLERNYKYEVLTEHDLGVTID 93
E + ++Y N LP KF+ P E RF+ +++L R + + + + G+ ID
Sbjct: 16 EYIASLRYRNDLPPPDMPPKFLDIPHEGLERFLTPGFASNLGRREELNIDVDAEGGMPID 75
Query: 94 LIN------KDTYA---PNYNIQLDPADEKLLEEDILTPQDSKRSRHHARSVSWLRRTEY 144
L+ D A P +DPAD LL LT K +VS+LRRT+Y
Sbjct: 76 LVGIPGLHLGDESAIMLPENPDPVDPADLPLL----LTLDQLKNPAPKNANVSFLRRTQY 131
Query: 145 ISTE-QTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHY 203
IS + P+V + K + K ++D Y+ + +K + + DSK E
Sbjct: 132 ISAGIRAPDGPKVNTPIRPK---RLDKKSQDDPTYIKKYI-MKGFDIAYPDSKHVGEDTS 187
Query: 204 S--KPNV-TPVEI----MPVYPD 219
S K +V T +E+ PV+PD
Sbjct: 188 SRIKGHVPTKLEMDAWAQPVHPD 210
Score = 68 (29.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 202 HYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIRGVMDE 261
H P + P+ P+ PD + + P V F D APV + E M A++ +
Sbjct: 208 HPDNPKLKPIGFFPLVPDLQGFPDPGGFVQFKFDKAPVQNSGGKRDERMDVAVL---LPS 264
Query: 262 SGEQFVAYFLPTAETLDK 279
E+ VA T + L K
Sbjct: 265 EPEERVAQEYATKKALHK 282
>SGD|S000000483 [details] [associations]
symbol:PAF1 "Component of the Paf1p complex involved in
transcription elongation" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0051569 "regulation of
histone H3-K4 methylation" evidence=IMP] [GO:0000993 "RNA
polymerase II core binding" evidence=IPI] [GO:0001076 "RNA
polymerase II transcription factor binding transcription factor
activity" evidence=IPI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IGI;IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IPI] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0001089 "TFIIF-class
binding transcription factor activity" evidence=IMP;IPI]
[GO:0031938 "regulation of chromatin silencing at telomere"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:2001166 "regulation of histone H2B
ubiquitination" evidence=IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP] [GO:0031124 "mRNA 3'-end
processing" evidence=IMP] [GO:0000114 "regulation of transcription
involved in G1 phase of mitotic cell cycle" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IMP] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:2001173 "regulation
of histone H2B conserved C-terminal lysine ubiquitination"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0031126 "snoRNA 3'-end processing" evidence=IMP] [GO:0001015
"snoRNA transcription from an RNA polymerase II promoter"
evidence=IMP;IDA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IDA]
[GO:2001165 "positive regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IMP]
[GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IGI] [GO:0070911 "global
genome nucleotide-excision repair" evidence=IMP] [GO:0006362
"transcription elongation from RNA polymerase I promoter"
evidence=IMP] [GO:2001163 "regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IMP]
[GO:2001255 "positive regulation of histone H3-K36 trimethylation"
evidence=IMP] [GO:0000983 "RNA polymerase II core promoter
sequence-specific DNA binding transcription factor activity"
evidence=IDA] SGD:S000000483 GO:GO:0003682 EMBL:BK006936
GO:GO:0070911 GO:GO:0000122 GO:GO:0000114 GO:GO:0000183
GO:GO:0034401 GO:GO:0006368 GO:GO:0000983 EMBL:X76053 GO:GO:0035327
GO:GO:0031938 GO:GO:0006364 GO:GO:0045910 GO:GO:0032968
GO:GO:0051569 GO:GO:0006362 GO:GO:0016593 GO:GO:0001089
GO:GO:2001255 GO:GO:2001165 GO:GO:2001209 GO:GO:2001173
GO:GO:0090262 GO:GO:0031124 GO:GO:0031126 GO:GO:0001015 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OrthoDB:EOG40S3R0 EMBL:Z36148
PIR:S44541 RefSeq:NP_009838.1 ProteinModelPortal:P38351
DIP:DIP-1149N IntAct:P38351 MINT:MINT-600620 STRING:P38351
PaxDb:P38351 PeptideAtlas:P38351 PRIDE:P38351 EnsemblFungi:YBR279W
GeneID:852582 KEGG:sce:YBR279W CYGD:YBR279w eggNOG:NOG276051
HOGENOM:HOG000000738 OMA:LEEDEWI NextBio:971727
Genevestigator:P38351 GermOnline:YBR279W Uniprot:P38351
Length = 445
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 78/333 (23%), Positives = 142/333 (42%)
Query: 33 RRSELVCRVKYNNTLPDIPFDCKFIAYP------FESTRFIEYKSTSLERNYKYEVLTEH 86
++ E + +KY N+LP K + YP +S++ I S ++ N + +
Sbjct: 3 KKQEYIAPIKYQNSLPVPQLPPKLLVYPESPETNADSSQLIN--SLYIKTNVTNLIQQDE 60
Query: 87 DLGVTIDL------INKDTYAPNY---NIQLDPADEKLLEEDILTPQDSKRSRHHARSVS 137
DLG+ +DL +NK Y N++LD D+++L D P+ + ++ V+
Sbjct: 61 DLGMPVDLMKFPGLLNKLDSKLLYGFDNVKLDK-DDRILLRD---PRIDRLTKTDISKVT 116
Query: 138 WLRRTEYIS-TEQTRFQPQVMDKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSK 196
+LRRTEY+S T + K G S ++NL D + + +E TF +K
Sbjct: 117 FLRRTEYVSNTIAAHDNTSLKRKRRLDDGDS-----DDENL--DVNHIISRVEGTF--NK 167
Query: 197 LPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPIPAQIEEMSQAMIR 256
+H K V V+ + PD QV F + + ++ + R
Sbjct: 168 TDKWQHPVKKGVKMVKKWDLLPDTASMD----QVYFILKFMGSASLDTKEKKSLNTGIFR 223
Query: 257 GVMDESGEQFVAYFLPTAET-LDKRKLDQLSNLEYTDEQEYE---YKMAREYNWNVKSKS 312
V E E Y ++ + + +L++ ++ D+ +E YK R ++++K +
Sbjct: 224 PVELEEDEWISMYATDHKDSAILENELEK--GMDEMDDDSHEGKIYKFKRIRDYDMKQVA 281
Query: 313 CKGYEENYF-LIVRDDAVYYNELETRVRLSKRR 344
K E L +D YY L +++ L +RR
Sbjct: 282 EKPMTELAIRLNDKDGIAYYKPLRSKIELRRRR 314
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 624 405 0.0010 117 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 613 (65 KB)
Total size of DFA: 256 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.07u 0.09s 39.16t Elapsed: 00:00:16
Total cpu time: 39.08u 0.09s 39.17t Elapsed: 00:00:16
Start: Thu Aug 15 15:05:31 2013 End: Thu Aug 15 15:05:47 2013