RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6664
(624 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 3e-12
Identities = 72/463 (15%), Positives = 136/463 (29%), Gaps = 168/463 (36%)
Query: 22 HSTPVPPRP---AERRSELVCRVKYNNTL--------PDI--PFD--CKFIAYPFESTRF 66
HS+ + R L+ Y N L F+ CK +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--------- 269
Query: 67 IEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTPQDS 126
LT VT D ++ T +I LD LTP +
Sbjct: 270 ----------------LTTRFKQVT-DFLSAATT---THISLDH------HSMTLTPDEV 303
Query: 127 KRSRHHARSVSWLR-RTEYISTEQTRFQPQVMDKVEA--KVGFSIKKNFKEDNLYMDRDS 183
K + + +L R + + E P+ + + + G + N+K +++ D
Sbjct: 304 K-----SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVNCDK 354
Query: 184 QVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPI 243
IE + + P E ++ +F I
Sbjct: 355 LTTIIESSLN-------------VLEPAEYRKMFDRL---------SVFPPS---A--HI 387
Query: 244 PAQI-----EEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNL-----EYTDE 293
P + ++ ++ + V+++ Y L ++K+ + ++ E +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNK----LHKYSL-----VEKQPKESTISIPSIYLELKVK 438
Query: 294 QEYEYKMAR----EYNWNVKSKSCKGYEENYFLIVRDDAVYYN---------------EL 334
E EY + R YN K ++ + + D +Y+ L
Sbjct: 439 LENEYALHRSIVDHYNIP------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 335 ETRVRLSKR--RQKV---GAAPNNTRLVVTHRPLNATEFRIQRLR--ERFLEP--PNEEE 385
V L R QK+ A N + + T +Q+L+ + ++ P E
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNAS------GSILNT---LQQLKFYKPYICDNDPKYER 543
Query: 386 EEED-------EEEEEEEAEET---Q---QGETT----EAERQ 411
EE ++ T + E EA +Q
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 56.4 bits (135), Expect = 2e-08
Identities = 45/314 (14%), Positives = 85/314 (27%), Gaps = 121/314 (38%)
Query: 12 TPSEKRT--------PSTHSTPVPPRPAERRSELVCRVKYNNTLPDIPFDCKFIAYPFES 63
P+E R P S +P L+ + ++ I D +
Sbjct: 367 EPAEYRKMFDRLSVFPP--SAHIPT-------ILLSLIWFD----VIKSDVMVVVNKLH- 412
Query: 64 TRFIEYKSTSLERNYKYEVLTEHDLGVTIDLINKDTYAPNYNIQLDPADEKLLEEDILTP 123
K + +E+ K ++ + L+ L
Sbjct: 413 ------KYSLVEKQPKESTISIPSI------------------YLE-----------LKV 437
Query: 124 QDSKRSRHHARSVSWLRRTEYISTEQTRFQPQVMDK-VEAKVGFSIKKNFKED------N 176
+ H V + + + P +D+ + +G +K +
Sbjct: 438 KLENEYALHRSIVDHYNIPK--TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 177 LYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFK-YWKYPCAQVIFDSD 235
+++D F + K+ +H S I+ K Y Y I D+D
Sbjct: 496 VFLDFR---------FLEQKI---RHDSTAWNASGSILNTLQQLKFYKPY-----ICDND 538
Query: 236 PAPVGRPIPAQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTD--- 292
P + ++ ++D FLP E L +YTD
Sbjct: 539 PKY-------------ERLVNAILD---------FLPKIEE-------NLICSKYTDLLR 569
Query: 293 -----EQEYEYKMA 301
E E ++ A
Sbjct: 570 IALMAEDEAIFEEA 583
Score = 51.8 bits (123), Expect = 6e-07
Identities = 44/325 (13%), Positives = 92/325 (28%), Gaps = 91/325 (28%)
Query: 116 LEEDILTPQDSKRSRHHARSVSWLRRTEY--I-----STEQTRFQPQVMDKVEAKVGFSI 168
E+ + D K + +S+ L + E I + T + + +K +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLR---LFWTLLSK-QEEM 78
Query: 169 KKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCA 228
+ F E+ L ++ + I+ + + + + +Y D
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-------RLYND--------N 123
Query: 229 QVIFDSDPAPVGRPIPAQIEEMSQAMIR-----GV----MDESGEQFVAYFLPTAETLDK 279
QV V R P ++ QA++ V + SG+ +VA +
Sbjct: 124 QVF---AKYNVSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLS 173
Query: 280 RK-----------------------LDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGY 316
K L+ L L Y + + + N ++ S +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 317 EENYF--------LIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEF 368
L+V + V + A + ++++T R T+F
Sbjct: 234 LRRLLKSKPYENCLLVLLN-VQNAKA------------WNAFNLSCKILLTTRFKQVTDF 280
Query: 369 RIQRLRERFLEPPNEEEEEEDEEEE 393
+ DE +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKS 305
Score = 32.9 bits (74), Expect = 0.37
Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 52/192 (27%)
Query: 32 ERRSELVCRVKYNN-TLPDIPFDCK------------FI-AYPFESTRFIEYKSTSLERN 77
+ S + + K + ++P I + K + Y T +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 78 YKYEVLTEH----------DL--GVTIDL------INKDTYAPNYNIQLDP--ADEKLLE 117
Y Y + H L V +D I D+ A N + + K +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 118 EDILTPQDSKRSRHHARSVSWLRRTE--YISTEQTRF-QPQVMDKVEAKVGFSIKKNFKE 174
I D K R + +L + E I ++ T + +M + EA
Sbjct: 532 PYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA------------ 578
Query: 175 DNLYMDRDSQVK 186
++ + QV+
Sbjct: 579 --IFEEAHKQVQ 588
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 45.1 bits (107), Expect = 2e-05
Identities = 11/58 (18%), Positives = 17/58 (29%)
Query: 383 EEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSK 440
E E E + + E EG+ E E DN S+ ++
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 44.7 bits (106), Expect = 3e-05
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 378 LEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEH 437
L P EE E E + + A GE +E + G+ +E
Sbjct: 172 LPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSE 231
Query: 438 SSKNS 442
+ ++
Sbjct: 232 DNSDA 236
Score = 42.8 bits (101), Expect = 2e-04
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 380 PPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSS 439
PP EE + E + + E + E E E +A S
Sbjct: 173 PPRLTAEELEAEVQAAQVAGL--VAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Query: 440 KNSSRA 445
+++S A
Sbjct: 231 EDNSDA 236
Score = 41.3 bits (97), Expect = 5e-04
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAE 436
E E + + + E E + E + + + SDA+
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 39.7 bits (93), Expect = 0.001
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 387 EEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSRAS 446
+E E E +A + +E EG E + + D + + +
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Score = 36.2 bits (84), Expect = 0.018
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 390 EEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSRASSRS 449
EE E + Q A + E + E + +E ++ S +S +
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Query: 450 R 450
+
Sbjct: 237 Q 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-05
Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 37/151 (24%)
Query: 354 TR-LVVTHRPLNAT-------EFRIQRLRERF---LEPPNEEEEEEDEEEEEEE------ 396
TR L ++H L F +L+E+F L P E +DE E
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 397 ------AEETQQGETTEAERQEGEGGERE--GGGE-----GENDNEKRTSDAEHSS--KN 441
E ++ G+ + E G + + E T+ + KN
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 442 --SSRASSRSRSRSKSKSPA--KRSRSGSAS 468
++R ++ R K + A + G+A
Sbjct: 126 YITARIMAK-RPFDKKSNSALFRAVGEGNAQ 155
Score = 43.9 bits (103), Expect = 2e-04
Identities = 52/340 (15%), Positives = 96/340 (28%), Gaps = 116/340 (34%)
Query: 98 DTYAPNYNIQLDPADEKLLEEDILTPQDSKRSRHHARS---VSWLRRTE----------- 143
TY + + E L E L + + + WL
Sbjct: 178 QTYHVLVGDLIKFSAETLSE---LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 144 --------------YIST-EQTRFQP-QVMDKVEAKVGFS--------IKKNFKEDNLYM 179
Y+ T + F P ++ ++ G S I + ++ +
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF- 293
Query: 180 DRDSQVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPV 239
S KAI F + + + + PN + ++ DS
Sbjct: 294 --VSVRKAITVLF---FIGVRCYEAYPNTS----------------LPPSILEDSLENNE 332
Query: 240 GRPIPAQIEEMSQAM--IRGVMDESGEQFVAYF---LPTAETLDKRKLDQLS--NLEYTD 292
G P P M I + E + +V LP + + ++S N
Sbjct: 333 GVPSP---------MLSISNLTQEQVQDYVNKTNSHLPAGKQV------EISLVN----- 372
Query: 293 EQEYEYKMAREYNWNVKS--KSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQKVGAA 350
+ N V +S G L +R ++R+ S+R+ K
Sbjct: 373 --------GAK-NLVVSGPPQSLYGLN----LTLRKAKAPSGLDQSRIPFSERKLKFS-- 417
Query: 351 PNNTR-LVVT---HRPL--NATEFRIQRLRERFLEPPNEE 384
R L V H L A++ + L + + ++
Sbjct: 418 ---NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 40.2 bits (93), Expect = 0.002
Identities = 25/208 (12%), Positives = 50/208 (24%)
Query: 417 EREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSD 476
+ TS + S + + + R ++S
Sbjct: 201 RGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSR 260
Query: 477 RSAKSDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKS 536
+ RS + RS K +R R S + ++R +R R + S
Sbjct: 261 DRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPS 320
Query: 537 VRSDKSAASNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSR 596
D + ++ + R ++ R R R R
Sbjct: 321 EAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKR 380
Query: 597 ARSNRSRSASKSGSSAASSRSGSPAGSD 624
R ++ +G +
Sbjct: 381 GERGSERGRDEARGGGGGQDNGLEGLGN 408
Score = 36.7 bits (84), Expect = 0.023
Identities = 27/236 (11%), Positives = 47/236 (19%), Gaps = 4/236 (1%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKN 441
+ G + + +
Sbjct: 179 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRE 238
Query: 442 SSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDKSAA 501
R + + RSR SR +K +R +RS DR + S
Sbjct: 239 RERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRER 298
Query: 502 SNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDKSASNR 561
+ R R D + AG D + R
Sbjct: 299 ARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE----R 354
Query: 562 SRSRSASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKSGSSAASSRS 617
RS + + + + R R + +G + S
Sbjct: 355 RRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDS 410
Score = 34.4 bits (78), Expect = 0.11
Identities = 17/190 (8%), Positives = 45/190 (23%)
Query: 374 RERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
R ++E E + ++ + E R +++ + + + +
Sbjct: 240 ERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERA 299
Query: 434 DAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARS 493
E K R + A K + R +
Sbjct: 300 RRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHR 359
Query: 494 DRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDG 553
++ +R R + R + + + + + S+G
Sbjct: 360 SERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEG 419
Query: 554 SDKSASNRSR 563
D + +
Sbjct: 420 GDGYLAPENG 429
Score = 29.4 bits (65), Expect = 4.3
Identities = 24/140 (17%), Positives = 36/140 (25%)
Query: 372 RLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKR 431
R R R EE + E + +G + + D E+R
Sbjct: 296 RERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERR 355
Query: 432 TSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSA 491
S + R R R R + R + G D + + D
Sbjct: 356 RSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYM 415
Query: 492 RSDRSDKSAASNRSRSGSAA 511
S+ D A AA
Sbjct: 416 ESEGGDGYLAPENGYLMEAA 435
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 37.5 bits (87), Expect = 0.007
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 377 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGE 417
+ + E++E EEEE E E + E E E ++ +
Sbjct: 199 YHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 36.8 bits (85), Expect = 0.012
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 367 EFRIQRLRERFLEPPNEEEEEED-EEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGE 425
R + ++ E + + E++EAEE + E E + E + GE E + +
Sbjct: 180 ILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Query: 426 N 426
N
Sbjct: 240 N 240
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 38.2 bits (89), Expect = 0.008
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 9/173 (5%)
Query: 374 RERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
R R ++ + ++ E DEE EEE E Q+ E A E G +EK +
Sbjct: 3 RHRDVKNLDLDDYELDEEPGEEELTEEQEEEFRSAVATVRE------TLLGVPISEKEIA 56
Query: 434 DA-EHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSAR 492
D + + ++ + ++ SK+ AK + + S+ K ++S ++ AK
Sbjct: 57 DTVWYYYFDVEKSVNYLLQKASSKAGAKEKQ--NTDSQKEKKQNKSKEALADAKDPLDES 114
Query: 493 SDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAAS 545
S+ + + + + + S ++ ++ S
Sbjct: 115 SNGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPE 167
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 36.6 bits (85), Expect = 0.012
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 378 LEPPNEEEEEEDEEEEEEEAEETQQGETTEAE 409
+ P + E+ E+ E E E ++G+ E E
Sbjct: 175 VPPEDVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
Score = 27.7 bits (62), Expect = 9.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 390 EEEEEEEAEETQQGETTEAERQEGE 414
E+ EE A E + E + ++E E
Sbjct: 181 EKLAEEAAAEVAEPEVIKKGKEEEE 205
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 36.7 bits (85), Expect = 0.021
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 485 AKSDRSARSDRSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAA 544
A + +D K S R S S R + D S
Sbjct: 471 ASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEI 530
Query: 545 SNRSARSDGSDKSASNRSRSRSASSQASNNSAASNRSSNKSGSRSRSRS 593
S R ++ + NR +++NN + +RS++K+ SR+ +
Sbjct: 531 SFRGNKNYNNRSQ--NRDYDDEPFRRSNNNRRSFSRSNDKNNYSSRNSN 577
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.037
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 10/96 (10%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAER----------QEGEGGEREGGGEGENDNEKR 431
N + + +D EE E + ++ QE + E E+
Sbjct: 15 NGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERS 74
Query: 432 TSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSA 467
+ + ++ + K K+ + G
Sbjct: 75 ALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 35.7 bits (81), Expect = 0.056
Identities = 19/128 (14%), Positives = 36/128 (28%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHS 438
E E E + EE ET AE + E E E N ++ AE +
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140
Query: 439 SKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDK 498
++ K+ P + + R + ++R
Sbjct: 141 KTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLV 200
Query: 499 SAASNRSR 506
+ +++
Sbjct: 201 NEKASKEA 208
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 34.1 bits (78), Expect = 0.095
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 377 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGE 425
F P E E++ EE EEA E + E E+ E E E
Sbjct: 203 FYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNVE 251
Score = 33.4 bits (76), Expect = 0.20
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 383 EEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNE 429
+ EE +++ EE E E + E E + E E ++ E
Sbjct: 205 RDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNVE 251
Score = 32.2 bits (73), Expect = 0.40
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 374 RERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
R + + D EE E++ E + T EA +E + E E E+
Sbjct: 191 RTQPWSIMPDLYFYRDPEEVEQQVAE--EATTEEAGEEEAKEEVTEEQAEATEWAEENAD 248
Query: 434 DAE 436
+ E
Sbjct: 249 NVE 251
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 34.5 bits (78), Expect = 0.097
Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 1/232 (0%)
Query: 336 TRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEE 395
+++L ++ + E L E EE+ + +E
Sbjct: 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380
Query: 396 EAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKS 455
E E+ Q +R E + D + + + R +
Sbjct: 381 ELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQE 440
Query: 456 KSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDKSAASNRSRSGSAASNKS 515
+ R + A++ + + SD + S +
Sbjct: 441 EVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLV 500
Query: 516 RSDRSRSGSAG-SDRSAASNKSVRSDKSAASNRSARSDGSDKSASNRSRSRS 566
R A ++R K+++ D + + + + + N + R
Sbjct: 501 DPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRD 552
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.12
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 369 RIQRLRERFLEPPNE------EEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGG 422
+ RL + EP E EE+ + +E + ++ +Q +A++ E +R+
Sbjct: 76 QADRLTQ---EP--ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 423 EGENDNEKRTSDAE 436
+N R +D
Sbjct: 131 VEKNKINNRIADKA 144
Score = 30.5 bits (68), Expect = 1.0
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 383 EEEEEEDE------EEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAE 436
+ +E E EE+ + +E ++ QE RE + + +R S+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQE--LDAASKVMEQE----WREKAKKDLEEWNQRQSEQV 131
Query: 437 HSSKNSSRAS 446
+K ++R +
Sbjct: 132 EKNKINNRIA 141
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 33.6 bits (76), Expect = 0.20
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 1/169 (0%)
Query: 333 ELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFLEPPNEEEEEEDEEE 392
+ TR L + Q N++ E + ER + ++ E E+ +E
Sbjct: 647 DQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLER-QKILDQSEAEKARKE 705
Query: 393 EEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSRASSRSRSR 452
E + E+T + E E EGE + A+ + + R +
Sbjct: 706 LLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKV 765
Query: 453 SKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDKSAA 501
+ + R++ S+ ++ AK + + R A
Sbjct: 766 REMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAG 814
Score = 33.6 bits (76), Expect = 0.21
Identities = 20/132 (15%), Positives = 44/132 (33%)
Query: 371 QRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEK 430
+ E + E + E+E E + + +EAE+ E E E
Sbjct: 662 IEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGN 721
Query: 431 RTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRS 490
++AE ++ + S ++K K+ A + + R + R+
Sbjct: 722 AKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEV 781
Query: 491 ARSDRSDKSAAS 502
+++ + A
Sbjct: 782 SKAQQLANVEAK 793
Score = 32.9 bits (74), Expect = 0.36
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 5/126 (3%)
Query: 365 ATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQ----EGEGGEREG 420
+ ++ R+ LE E + EAE + E E + +
Sbjct: 694 LDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAI 753
Query: 421 GGEGENDNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAK 480
E E + K+ + E + S+++ + AK+ + + G A
Sbjct: 754 ETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKE-MTEALGPGTIRDLAV 812
Query: 481 SDRSAK 486
+ +
Sbjct: 813 AGPEMQ 818
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 33.4 bits (75), Expect = 0.23
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
E EE++EE +E+E EE E + E + + G E E + S
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 33.2 bits (76), Expect = 0.30
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 370 IQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGE 414
+R + + E+ +E EA+E Q G+
Sbjct: 1478 SDFVRFTQVVDQKTLKAIEEARKEAVEAKERPAARRGVKREQPGK 1522
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 32.4 bits (74), Expect = 0.46
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 381 PNEEEEEEDEEEEEEEAEETQQGETTEAERQEGE 414
EE +E+EE+EEEEAE T E +E +
Sbjct: 342 DMEELTDEEEEDEEEEAESQSPEPETSEEEKEDK 375
Score = 31.6 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 370 IQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGERE 419
+ +RE F E +E D+ EE + EE + E E++ E E E E
Sbjct: 322 VDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEE 371
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 32.0 bits (72), Expect = 0.47
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 375 ERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGE 425
+ F EE +E++EEE A + A + GGE +
Sbjct: 204 DLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQ 254
Score = 31.3 bits (70), Expect = 0.84
Identities = 10/64 (15%), Positives = 19/64 (29%)
Query: 373 LRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRT 432
L+ R P + + + + EE ++ E EA + G D
Sbjct: 187 LQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGE 246
Query: 433 SDAE 436
+
Sbjct: 247 WGTD 250
Score = 30.5 bits (68), Expect = 1.5
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 367 EFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGEN 426
+ R L + + D EE +E+ EE + GE
Sbjct: 188 QMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEW 247
Query: 427 DNEKRTSDA 435
+ A
Sbjct: 248 GTDAAAQPA 256
Score = 29.4 bits (65), Expect = 3.4
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 385 EEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAE 436
+ EE +E+EEEEA AE G + + A+
Sbjct: 210 DPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQ 261
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.6 bits (71), Expect = 0.51
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 319 NYFLIVRDDAVYYNELET---RVRL-SKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLR 374
NY V++++V ++ +R+ S LV+ + P +
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIEL---- 178
Query: 375 ERFLEPPNEEEEEEDEEEEEEEAEETQQGETT 406
P E + + + + +
Sbjct: 179 ------PPNEILFSENNDMDNNNDGVDELNKK 204
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 32.3 bits (74), Expect = 0.58
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 370 IQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEG 415
+R + + E+ +E EA+E + Q G+G
Sbjct: 1219 SDFVRFTQVVDQRTLKAIEEARKEAVEAKEKEAPRRPVRREQPGKG 1264
Score = 29.6 bits (67), Expect = 3.6
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 365 ATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAE 409
+ R ++ ++ EE +E E +E+EA +
Sbjct: 1219 SDFVRFTQVVDQRTLKAIEEARKEAVEAKEKEAPRRPVRREQPGK 1263
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 31.6 bits (72), Expect = 0.62
Identities = 6/49 (12%), Positives = 17/49 (34%)
Query: 373 LRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGG 421
L + ++ +E +D+E+E++ + + G
Sbjct: 235 LLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEG 283
Score = 30.4 bits (69), Expect = 1.5
Identities = 4/45 (8%), Positives = 15/45 (33%)
Query: 383 EEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGEND 427
+ +++ +++E E+ + + + E D
Sbjct: 240 IDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGD 284
Score = 28.9 bits (65), Expect = 4.6
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 386 EEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAE 436
+ + +E + A++ G+ E E + N T+D E
Sbjct: 232 KGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQE 282
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 32.0 bits (72), Expect = 0.70
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 5/138 (3%)
Query: 330 YYNELE--TRVRLSKRRQKVGAAPNNTRLVVT-HRPLNATEFRIQRLRERFLEPPNEEEE 386
+ E T K+ + G N +RL I + + E
Sbjct: 490 LISSEEGETEANNHKKLSEFGIR-NGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVG 548
Query: 387 EEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKNSSRAS 446
+ E+ ++AE+ + T ++ + + D+ +++ S
Sbjct: 549 DAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEER 608
Query: 447 SRSRSRS-KSKSPAKRSR 463
SR R K AKRSR
Sbjct: 609 SRKRKLDEKENLSAKRSR 626
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 31.7 bits (71), Expect = 0.79
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
+ EEE EEE + E Q + + + G E+ + S
Sbjct: 452 DPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 31.6 bits (70), Expect = 0.94
Identities = 21/171 (12%), Positives = 42/171 (24%)
Query: 447 SRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSDRSDKSAASNRSR 506
+R R +P K + + +R + ++ SA S ++ A R + R
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70
Query: 507 SGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDKSASNRSRSRS 566
S S S K + ++ D S R+
Sbjct: 71 RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130
Query: 567 ASSQASNNSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKSGSSAASSRS 617
A + ++ + A + + A
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGL 181
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 31.2 bits (70), Expect = 0.99
Identities = 12/70 (17%), Positives = 21/70 (30%)
Query: 367 EFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGEN 426
R RE E + D EE E+E + + T+ E Q +
Sbjct: 184 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQP 243
Query: 427 DNEKRTSDAE 436
+ + +
Sbjct: 244 EVADWSEGVQ 253
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 30.0 bits (67), Expect = 1.2
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKN 441
+ + E +EE EE + + GETT+A + G +++ +R + E +
Sbjct: 17 DFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPK 76
Query: 442 SSRASS 447
RA++
Sbjct: 77 DQRATT 82
Score = 28.5 bits (63), Expect = 4.6
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 381 PNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGE------REGGGEGENDNEKRTSD 434
+ E DEE EE+ + T + GG + + EK
Sbjct: 17 DFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPK 76
Query: 435 AEHSSK 440
+ ++
Sbjct: 77 DQRATT 82
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 29.9 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGE 414
E +E+++++D+E+EEEE E T Q E + E
Sbjct: 53 EDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTE 88
Score = 28.3 bits (62), Expect = 4.1
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQE 412
+ +E+E++D++++E+E EE + + E R+
Sbjct: 50 DEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREH 83
Score = 28.3 bits (62), Expect = 4.7
Identities = 7/26 (26%), Positives = 21/26 (80%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGE 404
E +E+E+E+++E+++++ +E ++ E
Sbjct: 45 ENGDEDEDEDEDEDDDDDDDEDEEEE 70
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 30.1 bits (68), Expect = 1.7
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGERE 419
E EE EE E AE+ E A + + E +
Sbjct: 34 ESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAK 74
Score = 29.7 bits (67), Expect = 2.4
Identities = 15/62 (24%), Positives = 18/62 (29%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHS 438
E P EEE EEE + G AE E E E +E
Sbjct: 20 EQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEME 79
Query: 439 SK 440
+
Sbjct: 80 HR 81
Score = 28.5 bits (64), Expect = 5.3
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAE 436
E EEE + EEE + E + E E + + ++ E
Sbjct: 18 EREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTA---EELAAAKAQIAELE 72
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 30.6 bits (69), Expect = 2.1
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 367 EFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGEN 426
EF + + R L+ E+ + + E + + A E GG
Sbjct: 1125 EFLMAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFKELEHMAATNIFESFAPAGG----- 1179
Query: 427 DNEKRTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAK 480
+ D ++ +R + +R S ++R+G++ +G + S R+ K
Sbjct: 1180 -KADGSVDFGEGAEFCTRDDTPMMARPDSGEACDQNRAGTSEQQG-DLSKRTKK 1231
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 29.8 bits (66), Expect = 2.7
Identities = 45/258 (17%), Positives = 87/258 (33%), Gaps = 13/258 (5%)
Query: 380 PPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDA---- 435
P + + + E +A E ER G R G +E +
Sbjct: 214 VPGNFKSQLQKVPPEWKALTDMPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSA 273
Query: 436 -EHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRSARSD 494
+S +S S+ +R+ S + + +S GS S S S + +++ S
Sbjct: 274 GSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSP 333
Query: 495 RSDKSAASNRSRSGSAASNKSRSDRSRSGSAGSDRSAASNKSVRSDKSAASNRSARSDGS 554
R + N S ++ S+ S SGS G S + + S S + + G+
Sbjct: 334 RPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGT 393
Query: 555 DKSASNRSRSRSASSQASN--NSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKSGSSA 612
+ S + + ++ ++ + S S + R + S++ +K+
Sbjct: 394 FEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGKEKVTSGSTTTTRRSCSKTVTKTVIGP 453
Query: 613 ASSRSG------SPAGSD 624
+ S GSD
Sbjct: 454 DGHKEVTKEVVTSEDGSD 471
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 29.2 bits (66), Expect = 2.9
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQE 412
E++ E +E ++ + E E +
Sbjct: 4 RNHENTLEKDLEAVGQEAQALEERLKAAEEELKG 37
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 29.8 bits (67), Expect = 3.2
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 375 ERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEG------EGGEREGGGEGENDN 428
+ LE NEE E ++ E EE E ++ ++ +++ + + + E D
Sbjct: 24 DWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNLMTEGDM 83
Query: 429 EKRTSD 434
+ R +D
Sbjct: 84 KIRKTD 89
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 308
Score = 29.1 bits (65), Expect = 3.9
Identities = 15/81 (18%), Positives = 20/81 (24%)
Query: 361 RPLNATEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG 420
P F E ++ P +E + EEE A E G E G
Sbjct: 71 NPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMD 130
Query: 421 GGEGENDNEKRTSDAEHSSKN 441
+ S E
Sbjct: 131 SKIKKATGFGSKSKKEKIRDG 151
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 28.0 bits (62), Expect = 4.4
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
++ E+ D ++ ++ E+ + AE + E E GE N+KR +
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRIT 53
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.9 bits (65), Expect = 4.4
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTSDAEHSSKN 441
+ +E++ E + EE Q E EA E + + E + E + ++A+ ++
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQH-EEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERD 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 4.4
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 38/65 (58%)
Query: 184 QVKAIEKTFADSKLPIEKHYSKPNVTPVEIMPVYPDFKYWKYPCAQVIFDSDPAPVGRPI 243
+K ++ + L K Y+ DS PA I
Sbjct: 21 ALKKLQ-----ASL---KLYA---------------------D------DSAPA---LAI 42
Query: 244 PAQIE 248
A +E
Sbjct: 43 KATME 47
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 28.6 bits (63), Expect = 4.5
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 371 QRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEK 430
Q + L+ E+ EEE QQ +A +Q+ E ++E + +
Sbjct: 95 QECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQA 154
Query: 431 RTSDAEHSSKNSSRAS 446
+ + A S+ N + +S
Sbjct: 155 QLAAASASASNQAGSS 170
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate
metabolism, cytoplasm, fucose metabolism, manganese,
metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A
3a9t_A*
Length = 595
Score = 29.0 bits (64), Expect = 4.8
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 245 AQIEEMSQAMIRGVMDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREY 304
I +S + V+ E + F Y E +D + + L D++EYE +
Sbjct: 183 LSIGSVSMGIAGSVVQE--DFFQNYLGMRNEYVDMSEFVRRIELGIYDKEEYERALK--- 237
Query: 305 NWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRL 340
W VK G + N R + + E V++
Sbjct: 238 -W-VKENCKVGPDNNRDGFKRTEEQKEKDWEISVKM 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 28.7 bits (65), Expect = 4.9
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 377 FLEPPNEEEEEEDEEEEEEEAEETQQ 402
F+ P ++ + E ++ ++++E +
Sbjct: 136 FIAPTDQGTQTEALQQLQKDSEAIRS 161
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
splicing, translation; NMR {Canis lupus familiaris}
Length = 171
Score = 28.3 bits (62), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 378 LEPPNEEEEEEDEEEEEEEAEETQQGE 404
L P E+E+ +D + EE + E +QG+
Sbjct: 142 LHPDPEDEDSDDYDGEEYDVEAHEQGQ 168
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain,
protein-protein interaction, microtubule BIN
cytoskeleton, protein binding; 2.30A {Homo sapiens}
Length = 82
Score = 26.8 bits (59), Expect = 6.2
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 379 EPPNEEEEEEDEEEEEEE 396
PP ++E EE ++E+++E
Sbjct: 64 APPEDDEIEEHQQEDQDE 81
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 28.4 bits (64), Expect = 6.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 383 EEEEEEDEEEEEEEAEETQQGETTEA 408
+ EE E+ +E T E
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAEG 370
Score = 28.4 bits (64), Expect = 7.2
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 385 EEEEDEEEEEEEAEETQQGETTEAE 409
+ +E E+ + + AE
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
>3ult_A ICE recrystallization inhibition protein-like Pro; beta-solenoid,
beta-roll, ICE-binding, antifreeze, extracellular,
antifreeze protein; HET: EDO; 1.40A {Lolium perenne}
Length = 133
Score = 27.4 bits (60), Expect = 7.1
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 522 SGSAGSDRSAASNKSVRSDKSAASNRSARSDGSDK----------SASNRSRSRSASSQA 571
SGS + RS + N +D + S + GS+ + SN S +
Sbjct: 9 SGSNNTVRSGSKNVLAGNDNTVISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSGTNHIVT 68
Query: 572 SNNSAASNRSSNKSGSRSRSRSVSRARSNRSRSASKSGSSAASSRSGSPAGSD 624
NN+ S +N SGS S + + S S + S +
Sbjct: 69 DNNNNVSGNDNNVSGSFHTVSGGHNTVSGSNNTVSGSNHVVSGSNKVVTDAAK 121
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 8.0
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 366 TEFRIQRLRERFLEPPNEEEEEEDEEEEEEEAEETQQGETTEAER 410
T ++ P +E ++ ++ + ETQ+ T AE
Sbjct: 215 TNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 28.1 bits (62), Expect = 8.6
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 377 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGE 417
+ E + E+EE E + + + E
Sbjct: 216 YAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEE 256
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 10.0
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 431 RTSDAEHSSKNSSRASSRSRSRSKSKSPAKRSRSGSASSRGSNKSDRSAKSDRSAKSDRS 490
+ E+ + + R+R +++ +R R N + D +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 491 ARSDRSDKSAASNRSRSGSAASNKSRSDRSRSG 523
D+ NR R + ++ SR R +
Sbjct: 449 EVFDKDLSKLKRNRKRITNQMTDSSRE-RPITK 480
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.121 0.326
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,402,947
Number of extensions: 490160
Number of successful extensions: 1633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 161
Length of query: 624
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 525
Effective length of database: 3,937,614
Effective search space: 2067247350
Effective search space used: 2067247350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.6 bits)