RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6664
         (624 letters)



>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
           vulgare), AMY1 isozyme [TaxId: 4513]}
          Length = 347

 Score = 35.3 bits (80), Expect = 0.018
 Identities = 19/216 (8%), Positives = 47/216 (21%), Gaps = 13/216 (6%)

Query: 208 VTPVEIMPVYPDFKYWKYPCAQVI--FDSDPAPVGRP--IPAQIEEMSQAMIRGVMDESG 263
           VT V + P         Y        +D D +  G    + + I  +    ++ + D   
Sbjct: 35  VTHVWLPPPSHSVSNEGY---MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIAD--- 88

Query: 264 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 323
              V           +               ++   M    +      +        F  
Sbjct: 89  --IVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAA 146

Query: 324 VRDDAVYYNELETRVRLSKRRQKVGAAPNNTRL-VVTHRPLNATEFRIQRLRERFLEPPN 382
             D     + ++  ++      K     +  RL           +  I            
Sbjct: 147 APDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEV 206

Query: 383 EEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
            +      + +    ++  +        + G     
Sbjct: 207 WDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242


>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 29.8 bits (67), Expect = 0.37
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 382 NEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGENDNEKRTS 433
           ++ E+  D ++ ++  E+    +   AE +  E  E    GE    N+KR +
Sbjct: 2   SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRIT 53


>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
           orenii [TaxId: 31909]}
          Length = 409

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 9/129 (6%)

Query: 208 VTPVEIMPVYPDFKYWKYPCAQVI--FDSDPAPVGRP--IPAQIEEMSQAMIRGVMDESG 263
           V  + +MP++    Y  Y    V   +  +P   G        +E   Q  I+ ++D   
Sbjct: 49  VNGIWLMPIFKSPSYHGY---DVTDYYKINPD-YGTLEDFHKLVEAAHQRGIKVIIDLPI 104

Query: 264 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 323
                   P      + K  +  +       + + K  +     V   S  G    YF  
Sbjct: 105 NHTSERH-PWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWS 163

Query: 324 VRDDAVYYN 332
              D  Y N
Sbjct: 164 GMPDLNYNN 172


>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 391

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 3/31 (9%)

Query: 195 SKLPIEKHYSKPNVTPVEIMPVYPDFKYWKY 225
           + +    +  +  +  V +MPV+    +  Y
Sbjct: 27  NAVS---YLKELGIDFVWLMPVFSSISFHGY 54


>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
           remodeling ATPase ISWI {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 102

 Score = 27.1 bits (60), Expect = 2.2
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 378 LEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG 420
           +    E   +  + + EE+ +  +    TE E QE E    +G
Sbjct: 58  VPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQG 100


>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 301

 Score = 28.4 bits (63), Expect = 2.7
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 379 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGER 418
           +P  E+  +  E  E     E    E  +A+    E   +
Sbjct: 75  QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114



 Score = 27.3 bits (60), Expect = 5.6
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 381 PNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG 420
           P  E+  + +E  E   E     +  E  + + E  + +G
Sbjct: 76  PKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115


>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
           (MIP) {Legionella pneumophila [TaxId: 446]}
          Length = 204

 Score = 27.1 bits (59), Expect = 4.9
 Identities = 9/44 (20%), Positives = 24/44 (54%)

Query: 158 DKVEAKVGFSIKKNFKEDNLYMDRDSQVKAIEKTFADSKLPIEK 201
           DK+   +G  + KNFK   + ++ ++  K ++   + ++L + +
Sbjct: 4   DKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTE 47


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 26.9 bits (59), Expect = 7.3
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 383 EEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGG 421
             +    ++ +   A+  QQ  T   E       +R  G
Sbjct: 242 AAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDRGAG 280


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.121    0.326 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,988,262
Number of extensions: 91457
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 26
Length of query: 624
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 533
Effective length of database: 1,158,166
Effective search space: 617302478
Effective search space used: 617302478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (25.8 bits)