Query psy6665
Match_columns 420
No_of_seqs 431 out of 1203
Neff 11.1
Searched_HMMs 29240
Date Sat Aug 17 00:00:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.6E-40 5.4E-45 316.8 32.9 361 8-390 57-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6E-32 2E-36 254.7 24.1 343 3-370 59-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.2E-30 4E-35 244.9 27.2 322 1-365 56-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.6E-28 5.4E-33 233.9 20.5 357 1-375 49-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 8.2E-28 2.8E-32 220.8 15.4 308 1-355 30-361 (375)
6 2cfq_A Lactose permease; trans 99.9 3.4E-26 1.2E-30 212.8 12.3 339 2-377 39-406 (417)
7 2xut_A Proton/peptide symporte 99.9 2.4E-23 8.2E-28 199.7 18.8 129 3-144 51-191 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2.1E-13 7E-18 127.9 9.2 167 209-376 30-212 (451)
9 3o7q_A L-fucose-proton symport 99.4 2E-12 7E-17 120.6 15.0 146 222-367 41-226 (438)
10 2gfp_A EMRD, multidrug resista 99.4 1.7E-12 5.9E-17 118.6 11.1 154 222-376 15-180 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.4 3.6E-12 1.2E-16 120.9 13.6 148 222-370 28-196 (491)
12 2xut_A Proton/peptide symporte 99.3 2.4E-11 8.2E-16 116.2 17.2 147 222-369 27-197 (524)
13 4gc0_A D-xylose-proton symport 99.1 8.4E-10 2.9E-14 104.5 13.8 103 243-345 57-188 (491)
14 2cfq_A Lactose permease; trans 99.0 9.9E-10 3.4E-14 101.7 7.9 123 9-144 262-392 (417)
15 2g9p_A Antimicrobial peptide l 58.7 6.1 0.00021 18.4 1.6 13 25-37 3-15 (26)
16 2jln_A MHP1; hydantoin, transp 33.5 1.3E+02 0.0043 27.9 7.8 13 300-312 370-382 (501)
17 4dve_A Biotin transporter BIOY 30.5 1.1E+02 0.0039 24.0 5.9 23 13-35 100-123 (198)
18 3iyz_A Aquaporin-4; water tran 24.2 3.5E+02 0.012 23.4 11.4 16 250-265 135-150 (340)
19 2b6o_A Aquaporin-0, lens fiber 23.2 1.1E+02 0.0039 25.4 5.0 23 349-371 200-222 (263)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.6e-40 Score=316.77 Aligned_cols=361 Identities=22% Similarity=0.412 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH------------------h--HHHHHhhcccc
Q psy6665 8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY------------------Y--TQLIMTGQIEK 66 (420)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------------------~--~~~~~~~r~~~ 66 (420)
..+..+.+.+|.++|+++ |+++||+|||++++++.+++.++++++++ + +++++++|
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R--- 133 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR--- 133 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH---
Confidence 456778899999999999 99999999999999999999999999984 4 88999999
Q ss_pred ccchhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh------------hhHHHH
Q psy6665 67 SLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------------HWRTVA 134 (420)
Q Consensus 67 ~~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~------------~wr~~f 134 (420)
+++|++.| ...+....+++|+.|+++|++..++.+.+..+|.++++.++... +||+.+
T Consensus 134 ---------~l~G~g~G-~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4gc0_A 134 ---------IIGGIGVG-LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF 203 (491)
T ss_dssp ---------HHHHHHHH-HHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH
T ss_pred ---------HHHHHHHH-HHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh
Confidence 99999999 77777999999999999999999999999999999988877553 588887
Q ss_pred HhHhhhcccc---------ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccc
Q psy6665 135 WLSLAYILIP---------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGI 205 (420)
Q Consensus 135 ~~~~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (420)
.+..++.++. +|+|+..+++.+++++.+++.+.++...++..+.. +..++ ++...... ....+
T Consensus 204 ~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~---~~~~~ 275 (491)
T 4gc0_A 204 ASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIK---HSLDH--GRKTGGRL---LMFGV 275 (491)
T ss_dssp HTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHTTHH---HHSCC
T ss_pred hhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHH---HHHHh--hhhhhhHH---HHhcc
Confidence 7766655443 89999999999998887776655433322211111 00000 11111111 11223
Q ss_pred hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----
Q psy6665 206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---- 280 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---- 280 (420)
++.........+.+..+.+.+.+|.+.+.+..+. ..+........++..+++.++++++.||+|||+.+..+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG 355 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence 4555666666777777888899999999888766 55666677778899999999999999999999887665544
Q ss_pred ------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh---
Q psy6665 281 ------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS--- 345 (420)
Q Consensus 281 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~--- 345 (420)
..+.......++..++..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.
T Consensus 356 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 356 MFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444555566667778889899999999999999999999999999999999988876543
Q ss_pred ---cCcchHHHHHHHHHHHHHHHHhhhccccCCCCChHHHHHHhcccc
Q psy6665 346 ---VGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSC 390 (420)
Q Consensus 346 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (420)
.+ ....+++++++++++.++.++++||||++++||+++.+++++
T Consensus 436 ~~~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 436 VAHFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred Hhhhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 33 456788999999999999999999999999999988876543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6e-32 Score=254.66 Aligned_cols=343 Identities=12% Similarity=0.027 Sum_probs=245.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH----h--HHHHHhhccccccchhHHHH
Q psy6665 3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY----Y--TQLIMTGQIEKSLIPVFCIL 75 (420)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~--~~~~~~~r~~~~~~~~~~~~ 75 (420)
.+..+.....+++.++..++.++ |+++||+|||++++.+.++.+++.+++++ + ++.+++.|
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------ 126 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL------------ 126 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH------------
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH------------
Confidence 35567788899999999999999 99999999999999999999999999999 7 88899999
Q ss_pred HHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----h-hHHHHHhHhhhcccc-cccee
Q psy6665 76 FYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H-WRTVAWLSLAYILIP-SPVWL 149 (420)
Q Consensus 76 ~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~-wr~~f~~~~~~~~~~-~~~~l 149 (420)
+++|++.+ ...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ + ||+.|++.+++.++. ...++
T Consensus 127 ~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 127 FLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 77887999999999999999999999999999999999988764 7 999999988776554 11222
Q ss_pred eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665 150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY 229 (420)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
..++++++.. ..+.++.+.. .+ ++.+++++++.+.++... ....+++.++...+..+...........+
T Consensus 206 ~~~~~~~~~~------~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 206 MMRDTPQSCG------LPPIEEYKND-YP---DDYNEKAEQELTAKQIFM-QYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp HCCCSSTTTC------CCSCTTTCCC-----------------CCTHHHH-HHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHhhcC------CCChhhhccc-cc---ccchhhhhcccccccchH-HHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211100 0000000000 00 000000011111111111 11222333444444444444456778889
Q ss_pred HHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhhHhhhccc-------------h-hHHHHHHHHH
Q psy6665 230 AVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY--GRRSLTMFSQIE-------------K-SLIPVFCILF 291 (420)
Q Consensus 230 ~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~-------------~-~~~~~~~~~~ 291 (420)
.|.++++. |. ..+.+.......++.+++.++.+++.||+ +||+.+..+..+ . +.........
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 99999884 77 67788888899999999999999999999 998876554333 1 2222223333
Q ss_pred HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665 292 YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF 370 (420)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 370 (420)
..+....+..+....+..|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..| +...+++.+++.+++.++.+..
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344556668999999999999999999999999 99999999999999998 8888888888887777766543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=1.2e-30 Score=244.88 Aligned_cols=322 Identities=11% Similarity=0.038 Sum_probs=235.5
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHH---HHh--HHHHHhhccccccchhHHH
Q psy6665 1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTS---GYY--TQLIMTGQIEKSLIPVFCI 74 (420)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~--~~~~~~~r~~~~~~~~~~~ 74 (420)
+|.+..+.....+.+.++..++.++ |+++||+|||++++.+.++.+++.+++ .++ ++.+++.|
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------- 124 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL----------- 124 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH-----------
Confidence 4677888899999999999999999 999999999999999999999999998 666 99999999
Q ss_pred HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhhh-------------------------
Q psy6665 75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLH------------------------- 129 (420)
Q Consensus 75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~------------------------- 129 (420)
++.|++.+ ...+...+++.|++|+++|++++++.+.+.++|..+++.++..+.
T Consensus 125 -~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 125 -FIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp -HHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred -HHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhh
Confidence 99999999 777779999999999999999999999999999999999988762
Q ss_pred -----hHHHHHhHhhhccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhcccc
Q psy6665 130 -----WRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATG 204 (420)
Q Consensus 130 -----wr~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (420)
||+.|++.+++.++....++..+.+..+ .+. ++.+++++.+.+.++.++ ++.
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~~~-------~~~~~~~~~~~~~~~~~~-~~~- 259 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ--------------SDN-------HSDAKQGSFSASLSRLAR-IRH- 259 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT--------------TTC-------CCCSSTTSHHHHHHHHTT-CSH-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc--------------ccc-------cccccccchhhhHHHHHh-ChH-
Confidence 9999987776665541111111111000 000 011111122233444443 222
Q ss_pred chHHHHHHHHHHHHHhcchhhHHHhHHHH-HHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-
Q psy6665 205 IKPLLVITVLFALQQLAGIYITIFYAVQF-LEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE- 280 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~- 280 (420)
++...+..+...........+.|.| +++. |. ..+.+.......++.+++.++.+++.||++||+.+..+..+
T Consensus 260 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 260 ----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2222222222333356677888999 8876 87 77788888889999999999999999999999988777665
Q ss_pred ----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcch
Q psy6665 281 ----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSA 350 (420)
Q Consensus 281 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~ 350 (420)
......... ...+.+.....+..+++..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..|++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 336 MALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp HHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222222 3333333345677788888999977 888888877 677999999999999999988666
Q ss_pred HHHHHHHHHHHHHHH
Q psy6665 351 MVQWFFALISVISIV 365 (420)
Q Consensus 351 ~~~~~~~~~~~~~~~ 365 (420)
..+.+.+++.++..+
T Consensus 413 ~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 413 TAELIPALCFAVIFI 427 (438)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665544444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=1.6e-28 Score=233.86 Aligned_cols=357 Identities=10% Similarity=-0.001 Sum_probs=226.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHH
Q psy6665 1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILF 76 (420)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~ 76 (420)
+|.+..+.....+.+.++..+++++ |+++|| +|||+++..+.++.+++.++++++ ++.+++.| +
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSI------------I 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHH------------H
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------H
Confidence 3667788889999999999999999 999999 899999999999999999999888 88999999 9
Q ss_pred HHHHHhhcccchhhhhhhhhccCccc--hhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc-----
Q psy6665 77 YVAISVIAMGPSPAIVYITEVARPDL--RGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS----- 145 (420)
Q Consensus 77 l~G~~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~----- 145 (420)
++|++.+ ...+...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++..
T Consensus 117 l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 117 LIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 777779999999999988 77788889999999999999988876 89999998866655441
Q ss_pred --cceeeecC-------cHHHHHHHHHH---------------HhcchhhhhhhHHHHhhhcc-c----hhhhhhhhHHH
Q psy6665 146 --PVWLLNKG-------RANQALKSLKY---------------LARNYKEVKNKEQELKKMNS-T----KENQSLSARLI 196 (420)
Q Consensus 146 --~~~l~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 196 (420)
+.+...++ +.++.++..+. ...+..+.+........... . .....+....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (491)
T 4aps_A 196 GGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT 275 (491)
T ss_dssp HHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc
Confidence 11111000 11111111111 00000000000000000000 0 00000000000
Q ss_pred HHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhH
Q psy6665 197 KMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLT 274 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 274 (420)
... +++... .....+..............+.|.+.++. +. ..+.+.......+..+++.++.+++.||++||+..
T Consensus 276 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 276 STE-HLRVVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp -------CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHH-HHHHHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 000 111111 11111111122222344555667777664 44 35566677778888899999999999999988543
Q ss_pred h-----hhccc-----------h---------hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHH
Q psy6665 275 M-----FSQIE-----------K---------SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH 329 (420)
Q Consensus 275 ~-----~~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 329 (420)
. .+..+ . +........++.+.......+..+++..|.+|++.|+++.|+.+....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3 23222 1 222233333333333333466778999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665 330 ILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETH 375 (420)
Q Consensus 330 ~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (420)
+|..++|.+.+.+.+. + +...+.+.++++++..++.++..++.+
T Consensus 433 ~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 433 VGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887664 4 577888888888877777766655443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=8.2e-28 Score=220.83 Aligned_cols=308 Identities=10% Similarity=0.011 Sum_probs=223.7
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665 1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY 77 (420)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l 77 (420)
+|.+..+.....+.+.++..++.++ |+++||+|||+++..+.++.+++.+++.++ ++.+++.| ++
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l 97 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAAS------------AM 97 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence 4667788889999999999999999 999999999999999999999999999888 88999999 99
Q ss_pred HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665 78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK 152 (420)
Q Consensus 78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~ 152 (420)
.|++.+ ...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.+++.++. ...++..+
T Consensus 98 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 98 QGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999 87887999999999999999999999999999999999998876 8999999888776554 21222222
Q ss_pred CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665 153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ 232 (420)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (420)
+++++. ++ +++.+++.++.++ + +.++...+..+...........+.|.
T Consensus 177 ~~~~~~-----------------------~~---~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 177 ETRPVD-----------------------AP---RTRLLTSYKTLFG-N-----SGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp CCSTTT-----------------------CC---CCCTTTCSTHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ccCCCC-----------------------cc---cccHHHHHHHHhc-C-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 00 0011122223332 2 12222222233333345667778888
Q ss_pred HHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhc-cc---------h----hHHHHHHHHHHHHHH
Q psy6665 233 FLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQ-IE---------K----SLIPVFCILFYVAIS 296 (420)
Q Consensus 233 ~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~---------~----~~~~~~~~~~~~~~~ 296 (420)
++++ .|. +.+.+.......++.+++.++.+++.||.+++....... .. . +...........+..
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 8877 477 677788888889999999999999999998743332221 11 1 112122222222222
Q ss_pred hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHH
Q psy6665 297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWF 355 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~ 355 (420)
.....+...++..|.+| ++|+++.|+.+....++..++|.+.|.+.+..+ +...+.+
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHH
Confidence 22345666788899998 889999999999999999999999999887766 4444443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=3.4e-26 Score=212.81 Aligned_cols=339 Identities=10% Similarity=0.038 Sum_probs=199.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHH---HHh---HHHHHhhccccccchhHHH
Q psy6665 2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTS---GYY---TQLIMTGQIEKSLIPVFCI 74 (420)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~---~~~~~~~r~~~~~~~~~~~ 74 (420)
|.+..+.....+.+.++..+++++ |+++||+|||++++.+..+.+++.... .+. ...+...+
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 107 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS----------- 107 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH-----------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 567778889999999999999999 999999999999999888776533222 111 01122233
Q ss_pred HHHHHHHhhcccchhhhhhhhhccCc--cchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhcccccccee
Q psy6665 75 LFYVAISVIAMGPSPAIVYITEVARP--DLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIPSPVWL 149 (420)
Q Consensus 75 ~~l~G~~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~~~l 149 (420)
++.|++.+ .........+.++.++ ++|+...+......++|..++|.+++.+ +||+.|++.++..++....++
T Consensus 108 -~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~ 185 (417)
T 2cfq_A 108 -IVGGIYLG-FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp -HGGGSSTT-HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSC
T ss_pred -HHHHHHHH-HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 33333333 2222223334444433 3456666777667777888888777765 799999887776544311122
Q ss_pred eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665 150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY 229 (420)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
..+++.++. .+. .+. ++.++++....+.++.++ ++..+ ...+..+...........+
T Consensus 186 ~~~~~~~~~--------~~~--~~~-------~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2cfq_A 186 FAKTDAPSS--------ATV--ANA-------VGANHSAFSLKLALELFR-QPKLW-----FLSLYVIGVSCTYDVFDQQ 242 (417)
T ss_dssp SSCCCCSCS--------SCS--SSS-------SSSCCCCCCHHHHHHHTT-CHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HcCcccccc--------ccc--ccc-------cccccccccHHHHHHHhc-CCchh-----hHHHHHHHHHHHHHHHHHH
Confidence 111111000 000 000 000000001112223332 22211 1111111111122333445
Q ss_pred HHHHHHhh-C---C-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHH
Q psy6665 230 AVQFLEDM-G---S-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYV 293 (420)
Q Consensus 230 ~~~~~~~~-g---~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~ 293 (420)
.|.++.+. + . ....+.......+..+++.++.++++||+|||+.+..+..+ .+...+.......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH 322 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHH
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66666543 2 1 22334556666778889999999999999999887765544 1111221111111
Q ss_pred HHHhhchhhHHHHHhcccCChhhhhhhHHHH-HHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665 294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLT-FCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP 372 (420)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (420)
........+..+.+..|.+|++.|+++.++. +....+|+.++|.+.|.+.+..| +...|.+.+++++++.++.+...|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2222223344568999999999999999994 78888999999999999999888 778888888888888777666666
Q ss_pred cCCCC
Q psy6665 373 ETHGR 377 (420)
Q Consensus 373 ~~~~~ 377 (420)
|+++.
T Consensus 402 ~~~~~ 406 (417)
T 2cfq_A 402 GPGPL 406 (417)
T ss_dssp CSCTT
T ss_pred CCCch
Confidence 54443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=2.4e-23 Score=199.73 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=115.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHH-HHHHHhh-cchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHHHH
Q psy6665 3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTY-GRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCILFY 77 (420)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~l 77 (420)
.+..+.....+.+.++..++.++ |+++||+ |||+++..+.++.+++.++++++ ++.+++.| ++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l 118 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL------------FL 118 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH------------HH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH------------HH
Confidence 67888889999999999999999 9999999 99999999999999999988876 77888999 99
Q ss_pred HHHHhhcccchhhhhhhhhccCccchhhhHhH---HHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665 78 VAISVIAMGPSPAIVYITEVARPDLRGALICI---GPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP 144 (420)
Q Consensus 78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~ 144 (420)
.|++.+ ...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.+++.++.
T Consensus 119 ~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 119 IALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999 7777799999999999999877666 8889999999999888766 8999999887766544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=2.1e-13 Score=127.90 Aligned_cols=167 Identities=8% Similarity=-0.045 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------
Q psy6665 209 LVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------- 280 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------- 280 (420)
+.......+...........+.|.+.++. . ..+.+.......++..++.++.|+++||+|||+.+..+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33343444444434555677788888887 7 78889999999999999999999999999999998887766
Q ss_pred --h------hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHH
Q psy6665 281 --K------SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMV 352 (420)
Q Consensus 281 --~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~ 352 (420)
. +...++...++.+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..|+++..
T Consensus 109 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~ 188 (451)
T 1pw4_A 109 MGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 188 (451)
T ss_dssp HHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred HHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 1 01122222233333333346677799999999999999999999999999999999999988877557888
Q ss_pred HHHHHHHHHHHHHHhhhccccCCC
Q psy6665 353 QWFFALISVISIVYVYIFLPETHG 376 (420)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~ 376 (420)
+++.++++++..++.++..||+.+
T Consensus 189 f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 189 LYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHhhccCCHh
Confidence 888888887777776667776543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=2e-12 Score=120.62 Aligned_cols=146 Identities=8% Similarity=0.023 Sum_probs=111.5
Q ss_pred chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHH
Q psy6665 222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPV 286 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~ 286 (420)
.........|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+ .+...+
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF 120 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 345666778887777788 88899999999999999999999999999999998877766 122233
Q ss_pred HHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH-HhcCc-----------------
Q psy6665 287 FCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK-DSVGG----------------- 348 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~-~~~g~----------------- 348 (420)
+...++.+.......+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+.
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 200 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAY 200 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhh
Confidence 333333333333446677799999999999999999999999999999999999988 54442
Q ss_pred -------chHHHHHHHHHHHHHHHHh
Q psy6665 349 -------SAMVQWFFALISVISIVYV 367 (420)
Q Consensus 349 -------~~~~~~~~~~~~~~~~~~~ 367 (420)
++..+.+.+++..+..++.
T Consensus 201 ~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 201 KHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555444
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=1.7e-12 Score=118.56 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=120.8
Q ss_pred chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665 222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI 289 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~ 289 (420)
.........|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+ ++...+...
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA 94 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345556667777777788 78888999999999999999999999999999988877665 223333333
Q ss_pred HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665 290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI 369 (420)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 369 (420)
.+..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| ++..+.+.++..++..+...+
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334566777999999999999999999999999999999999999988888 888888888887777765656
Q ss_pred ccccCCC
Q psy6665 370 FLPETHG 376 (420)
Q Consensus 370 ~~~~~~~ 376 (420)
..||+++
T Consensus 174 ~~~~~~~ 180 (375)
T 2gfp_A 174 WMPETRP 180 (375)
T ss_dssp SSCCCST
T ss_pred HCcccCC
Confidence 6676543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.38 E-value=3.6e-12 Score=120.89 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=115.4
Q ss_pred chhhHHHhHHHHHHh------hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhhHhhhccc-----------hh
Q psy6665 222 GIYITIFYAVQFLED------MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSLTMFSQIE-----------KS 282 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~------~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~-----------~~ 282 (420)
.++....+.+.|+++ .|. ..+.+.......++..++.++.|+++|| +|||+.+..+..+ .+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~ 107 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG 107 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666777777765 477 7788899999999999999999999999 8999998887766 23
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHH
Q psy6665 283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEI--RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALIS 360 (420)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 360 (420)
...+....++.+.......+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..| ++..+++.++..
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~ 186 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGM 186 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Confidence 3333333334444344456777899999999888 7888888999999999999999999999988 888888877766
Q ss_pred HHHHHHhhhc
Q psy6665 361 VISIVYVYIF 370 (420)
Q Consensus 361 ~~~~~~~~~~ 370 (420)
+++.+...+.
T Consensus 187 ~~~~~~~~~~ 196 (491)
T 4aps_A 187 FIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666555433
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.35 E-value=2.4e-11 Score=116.20 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=113.4
Q ss_pred chhhHHHhHHHHHHh-hC------C-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhhhccc-----------h
Q psy6665 222 GIYITIFYAVQFLED-MG------S-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-GRRSLTMFSQIE-----------K 281 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~-~g------~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~-----------~ 281 (420)
..+....+.+.++.+ .| . ..+.+.......++..++.++.|+++||+ |||+.+..+..+ .
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 355666777777765 48 8 78888999999999999999999999999 999988777655 2
Q ss_pred -hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHH---HHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHH
Q psy6665 282 -SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGL---TFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFA 357 (420)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~ 357 (420)
+...+....++.+.......+...+++.|.+|++.|++..+. .+....+|..++|.+.+.+.+..| ++..+.+.+
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~ 185 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPG 185 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 333343334444444444567778999999999999776665 888999999999999999999888 888888877
Q ss_pred HHHHHHHHHhhh
Q psy6665 358 LISVISIVYVYI 369 (420)
Q Consensus 358 ~~~~~~~~~~~~ 369 (420)
++.++..+...+
T Consensus 186 ~~~~~~~~~~~~ 197 (524)
T 2xut_A 186 VLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 776666555433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=8.4e-10 Score=104.51 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------------------------hhHHHHHHHHHHH
Q psy6665 243 VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------------------------KSLIPVFCILFYV 293 (420)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~ 293 (420)
.++..+...++.++|+++.|+++||+|||+.+.++.++ .+...++..-++.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 34566677889999999999999999999998877654 1223344444444
Q ss_pred HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665 294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS 345 (420)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~ 345 (420)
+....+..+...+++.|..|++.|+...++.+.....|..+++.+.......
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 4444455677789999999999999999999999988888888777665543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.96 E-value=9.9e-10 Score=101.72 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcc
Q psy6665 9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAM 85 (420)
Q Consensus 9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~ 85 (420)
....++..++..++.++ |+++||+|||+++..+.++.+++.+..++. .+.+++.. ++.+++.+ .
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~-~ 328 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK------------TLHMFEVP-F 328 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHT------------THHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HHHHHHHH-H
Confidence 34455566777788888 999999999999998888888776666554 55566666 77777776 5
Q ss_pred cchhhhhhhhhccCccchhhhHhH-HHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665 86 GPSPAIVYITEVARPDLRGALICI-GPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP 144 (420)
Q Consensus 86 ~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~ 144 (420)
..+....++.|.+|++.|+++.++ ++....+|..++|.+++.+ +++..|.+.+++.++.
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 555578899999999999999998 4888889999998888765 6778887777665554
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.71 E-value=6.1 Score=18.41 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=10.7
Q ss_pred HHHHHHhhcchhH
Q psy6665 25 TSQLLRTYGRRSL 37 (420)
Q Consensus 25 ~g~l~dr~Grr~~ 37 (420)
+|.+..+||||..
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 3889999999854
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=33.54 E-value=1.3e+02 Score=27.89 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=7.2
Q ss_pred hhhHHHHHhcccC
Q psy6665 300 MLSIPWTMTAEIF 312 (420)
Q Consensus 300 ~~~~~~~~~~~~~ 312 (420)
..|..-.++.|.+
T Consensus 370 l~P~~gI~l~Dy~ 382 (501)
T 2jln_A 370 LGPLAGIMISDYF 382 (501)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455556666654
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.47 E-value=1.1e+02 Score=24.05 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHH-HHHHHhhcch
Q psy6665 13 LVGVVRMVFGLLT-SQLLRTYGRR 35 (420)
Q Consensus 13 ~~~~~g~~~~~~~-g~l~dr~Grr 35 (420)
.-|.+|+.+++.+ |++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 3468889999999 9999997654
No 18
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=24.19 E-value=3.5e+02 Score=23.42 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhh
Q psy6665 250 VGVVRMVFGLLTSQLL 265 (420)
Q Consensus 250 ~~~~~~~~~~~~g~l~ 265 (420)
+.+.+++|.+++..+.
T Consensus 135 YiiAQ~lGA~~GA~lv 150 (340)
T 3iyz_A 135 YITAQCLGAIIGAGIL 150 (340)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554443
No 19
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=23.17 E-value=1.1e+02 Score=25.36 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhcc
Q psy6665 349 SAMVQWFFALISVISIVYVYIFL 371 (420)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~ 371 (420)
+.+.+++--.+..+...+.+.++
T Consensus 200 ~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 200 NHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeHHHHHHHHHHHHHHHHHHHH
Confidence 45556555554444444444444
Done!