RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6665
(420 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 123 bits (311), Expect = 4e-31
Identities = 101/408 (24%), Positives = 170/408 (41%), Gaps = 52/408 (12%)
Query: 16 VVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCIL 75
V ++ L +L +GR+ + + + L+ KS +
Sbjct: 57 VGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIG--------ALLQGFAKGKSFYMLIVGR 108
Query: 76 FYVAISV-IAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------ 128
V + V P +YI+E+A LRGAL + + G+++ +G L
Sbjct: 109 VIVGLGVGGISVLVP--MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 129 -HWRTVAWLSLAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQE 178
WR L + +P SP WL+ KG+ +A L L R +V + QE
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKL-RGVSDVDQEIQE 225
Query: 179 LKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG 238
K + ++ A +++ T + LL+ +L QQL GI +Y+ E +G
Sbjct: 226 EKDSLE-RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG 284
Query: 239 SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFS--------------------Q 278
+ L T++VGVV VF + L+ +GRR L +
Sbjct: 285 LS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKS 343
Query: 279 IEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQY 338
++ + IL ++A +G +PW + +E+FPL +R A + + F
Sbjct: 344 KGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFL 403
Query: 339 YPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYF 386
+P ++GG V FA + V+ I++V+ F+PET GRTL EI+E F
Sbjct: 404 FPIITGAIGG--YVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
Score = 46.5 bits (111), Expect = 2e-05
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 6 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIE 65
+ L T++VGVV VF + L+ +GRR L + GMA+C G L +
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLG-VALLGVAKSKG 345
Query: 66 KSLIPVFCILFYVAISVIAMGPSPAI-VYITEVARPDLRGA 105
++ + IL ++A A+G P V ++E+ +R
Sbjct: 346 AGIVAIVFILLFIA--FFALGWGPVPWVIVSELFPLGVRPK 384
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 112 bits (283), Expect = 3e-27
Identities = 94/410 (22%), Positives = 160/410 (39%), Gaps = 59/410 (14%)
Query: 19 MVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYV 78
+ L L +GR+ + L + G + LI V +L +
Sbjct: 85 FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA----FALSVEMLI-VGRVLLGI 139
Query: 79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG--AVLHWRTVAW- 135
+ + + +Y++E+A LRGAL + + G+++ Y G V T+ W
Sbjct: 140 GVGIASA---LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196
Query: 136 LSLAYILIP-------------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKM 182
+ L LIP SP WL+ KGR +A KSL + +++EL
Sbjct: 197 IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL----ARLRGTSGEDKELLDE 252
Query: 183 NSTKENQSLSARLIKMVTMAT-------GIKPLLVITVLFALQQLAGIYITIFYAVQFLE 235
+ + + + + + L + VL QQ GI ++Y+ E
Sbjct: 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
Query: 236 DMGSRMN-VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMF------------------ 276
+ G + +L +++VG V F + L+ +GRR L +
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372
Query: 277 ----SQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILM 332
S + + IL ++A +G +PW + +EIFPL +R + +
Sbjct: 373 FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432
Query: 333 FFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEI 382
F +P G V FF ++V+ +++VY FLPET GRTL EI
Sbjct: 433 FIVGFLFP-TMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
Score = 41.6 bits (98), Expect = 7e-04
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 8 YLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEK- 66
+L +++VG V F + L+ +GRR L + GMA+C+ G +TG +
Sbjct: 322 FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381
Query: 67 SLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGA 105
+ + IL ++A + GP P V ++E+ LR
Sbjct: 382 GNVAIVFILLFIAFFAMGWGPVPW-VIVSEIFPLSLRPK 419
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 103 bits (259), Expect = 4e-24
Identities = 100/432 (23%), Positives = 178/432 (41%), Gaps = 74/432 (17%)
Query: 10 ATVLVGVVRMVFGLLTSQLLRTYGRRS-------LTMFSGLGMAVCMTTSGYYTQLIMT- 61
A+ L+G + + G L +GRR L S LG + + T
Sbjct: 62 ASALIGCI--IGGALGGYCSNRFGRRDSLKIAAVLFFISALG--------SAWPEFGFTS 111
Query: 62 -GQIEKSLIPVFCILFYVAISVIAMGPSPAI--VYITEVARPDLRGALICIGPSITSLGM 118
G +P F + Y I I +G + + +YI E+A +RG L+ G
Sbjct: 112 IGPDNTGYVPEF--VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169
Query: 119 VIVY------ALGAVLHW-RTVAW--------------LSLAYILIPSPVWLLNKGRANQ 157
++VY A W T W L L Y + +P +L+++G+ Q
Sbjct: 170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQ 229
Query: 158 ALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFAL 217
A L+ + N QE+K +S + +L + G+ +++ +L
Sbjct: 230 AEGILRKIMGN-TLATQALQEIK--HSLDHGRKTGGKL-----LMFGVGVIVIGVMLSVF 281
Query: 218 QQLAGIYITIFYAVQFLEDMGSRMNV-YLATVLVGVVRMVFGLLTSQLLRTYGRRSL--- 273
QQ GI + ++YA + + +G+ ++ L T++VGV+ + F +L + +GR+ L
Sbjct: 282 QQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 341
Query: 274 -------------TMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIA 320
T F ++ + +LFYVA + + W + +EIFP IRG A
Sbjct: 342 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 401
Query: 321 QGLTFCLAHILMFFALQYYPWFKDSVGGSA-----MVQWFFALISVISIVYVYIFLPETH 375
+ I +F +P + A W + + V++ ++++ F+PET
Sbjct: 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461
Query: 376 GRTLLEIEEYFE 387
G+TL E+E +E
Sbjct: 462 GKTLEEMEALWE 473
Score = 45.5 bits (108), Expect = 4e-05
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 9 LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSG--YYTQLIMTGQIEK 66
L T++VGV+ + F +L + +GR+ L + LGMA+ M + G +YTQ
Sbjct: 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------P 362
Query: 67 SLIPVFCILFYVAISVIAMGP 87
++ + +LFYVA ++ GP
Sbjct: 363 GIVALLSMLFYVAAFAMSWGP 383
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 55.4 bits (134), Expect = 3e-08
Identities = 76/404 (18%), Positives = 152/404 (37%), Gaps = 61/404 (15%)
Query: 9 LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
L V ++ + L +GR+ + + S L AV + +
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNY---------- 180
Query: 69 IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG-AV 127
VF + + I A+V TE R + + SLG+V++ + +
Sbjct: 181 -TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239
Query: 128 LHWR---------TVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQE 178
WR T + L++ + SP WL+++GR +ALK L+ +A+ K E
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAK--INGKKLPAE 297
Query: 179 LKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG 238
+ ++ K+ S + + T + ++ A Y + + L
Sbjct: 298 VLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG--- 354
Query: 239 SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQI---EKSLIPVFCI--LFYV 293
N+YL + G+V + L+T L+ GRR S + L+ +F L+++
Sbjct: 355 --GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412
Query: 294 AISVI----GMLSIPWTM----TAEIFPLEIRGIAQGLTFCLAHI------LMFFALQYY 339
++ ++ + M TAE++P +R + G+ +A + + + + +
Sbjct: 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW 472
Query: 340 PWFKDSVGGSAMVQWFFALISVISIVY--VYIFLPETHGRTLLE 381
+ L ++++ + +FLPET G L E
Sbjct: 473 LF------------LPLVLFGGLALLAGILTLFLPETKGVPLPE 504
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 50.0 bits (120), Expect = 1e-06
Identities = 58/382 (15%), Positives = 108/382 (28%), Gaps = 76/382 (19%)
Query: 3 SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTG 62
S L + + LL L +GRR + + L A+ + + L +
Sbjct: 32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL-- 89
Query: 63 QIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVY 122
+ ++ A I E P RG + + + LG ++
Sbjct: 90 ---------LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGP 140
Query: 123 ALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKM 182
LG +L + I + L
Sbjct: 141 LLGGLLAESLGWRWLFLILAILGLLLAL-------------------------------- 168
Query: 183 NSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG--SR 240
+ + LL++ L G Y + Y +L+++ S
Sbjct: 169 ------------------LLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA 210
Query: 241 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTM------------FSQIEKSLIPVFC 288
L L G+ ++ LL L GRR L + + SL +
Sbjct: 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270
Query: 289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG 348
L + + T+ +E+ P E RG A GL + D+ G
Sbjct: 271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330
Query: 349 SAMVQWFFALISVISIVYVYIF 370
V A +++++ + + +
Sbjct: 331 G-GVFLILAALALLAALLLLLL 351
Score = 30.4 bits (69), Expect = 1.7
Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 13/176 (7%)
Query: 209 LVITVLFALQQLAGIYITIFYAVQFLEDMG-SRMNVYLATVLVGVVRMVFGLLTSQLLRT 267
L++ L + ED+G S L + + LL L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 268 YGRRSLTMFSQI-----------EKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEI 316
+GRR + + + SL + F + + + + AE FP +
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 317 RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP 372
RG A GL + G + A++ ++ + + L
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLL-AESLGWRWLFLILAILGLLLALLLLFLLR 175
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 38.2 bits (89), Expect = 0.007
Identities = 54/346 (15%), Positives = 104/346 (30%), Gaps = 55/346 (15%)
Query: 9 LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
L + + L +L +GRR + + L A+ + + +
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASS----------- 84
Query: 69 IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
+ + +L + A I + P+ RG + + + LG + LG +L
Sbjct: 85 LWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLL 144
Query: 129 ----HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNS 184
WR + L+ + + L L R E K
Sbjct: 145 ASLFGWRAAFLILAILALLAAVLAAL-------------LLPRPPPESKRP--------- 182
Query: 185 TKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG-SRMNV 243
K + A L+ + L ++ L + + Y + E +G S +
Sbjct: 183 -KPAEEAPAPLVPAWKLLLRDPVLWLLLALLLF--GFAFFALLTYLPLYQEVLGLSALLA 239
Query: 244 YLATVLVGVVRMVFGLLTSQLLRTYGRRSLT--------------MFSQIEKSLIPVFCI 289
L L G++ + LL +L GRR + +S + +
Sbjct: 240 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299
Query: 290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFA 335
L + + + +++ P E RG A GL +
Sbjct: 300 LLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 34.5 bits (79), Expect = 0.085
Identities = 67/382 (17%), Positives = 125/382 (32%), Gaps = 65/382 (17%)
Query: 5 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQI 64
+L +L + L+ +++ +G ++ S + A+ G + +
Sbjct: 15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY 74
Query: 65 EKSLIPVFCILFYVAISV-------------------IAMGP--SPAIVYITEVARPDLR 103
+ L V I+ + A ++ I MG + Y+ E LR
Sbjct: 75 GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR 134
Query: 104 GALICIGPSITSLGMVI-VYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSL 162
+ S ++G V+ V+ W +L +I I ++ L
Sbjct: 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL------------ 182
Query: 163 KYLARNYKEVKNKEQELKKMNSTKE-------NQSLSARLIK--MVTMATGIKPLLVITV 213
+L +N E ++ +++ + + A ++ M V
Sbjct: 183 -WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFV 241
Query: 214 LFALQQLAGIYITIFYAVQFL------EDMG-SRMNVYLATVLVGVVRMVFGLLTSQLLR 266
+ L + + +Q L D+G S V V + +V G + L
Sbjct: 242 YLVVLVLFANLYS--HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGD 299
Query: 267 TYGRRSLTMFSQIEKSL--IPVFCI----------LFYVAISVIGMLSIPWTMTAEIFPL 314
GRR + S + L IPVF I LF+ + V G+ I E FP
Sbjct: 300 WLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT 359
Query: 315 EIRGIAQGLTFCLAHILMFFAL 336
+ R G T+ L ++ A
Sbjct: 360 DQRAAGLGFTYQLGNLGGALAP 381
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 31.5 bits (71), Expect = 0.71
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 327 LAHILMFFALQYYPW--FKDSVGGSAMVQWFFALISVISIVYVYIF 370
LA +L+ AL ++ + D GG+ +V + FALI +I I+ ++IF
Sbjct: 27 LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIF 72
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 31.6 bits (72), Expect = 0.93
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 309 AEIFPLEIRGIAQGLTFCLAH---ILMFFALQYYPWFKDSVGGSAMVQWF------FALI 359
E+FP R A G++ I+ F Y D G W FAL
Sbjct: 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALF 477
Query: 360 SVISIVYVYIFLPETHGRTLLEI 382
+ I++ + +PET G++L E+
Sbjct: 478 MFLGILFT-LLIPETKGKSLEEL 499
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 31.1 bits (71), Expect = 1.0
Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 21/177 (11%)
Query: 206 KPLLVITVLFALQQLAGIYITIF---YAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
KP L+ L IT + Y Q L S + L +L ++ + L+
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTL--GLSANSALLVLMLSLILFFITIPLSG 276
Query: 263 QLLRTYGRRSLTMFSQIEKSLI--PVFCIL-----FYVAISVIGMLSIPWTMT------- 308
L GRR + + + +L+ P+ L F + ++ +++ M
Sbjct: 277 ALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSF 336
Query: 309 -AEIFPLEIRGIAQGLTFCLAHILMF-FALQYYPWFKDSVGGSAMVQWFFALISVIS 363
E+FP E+R L + LA + FA G + ++ A +++I
Sbjct: 337 LPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIG 393
>gnl|CDD|177644 PHA03416, PHA03416, hypothetical E4 protein; Provisional.
Length = 92
Score = 29.2 bits (65), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 304 PWTMTAEIFPLEIRGIAQGLTFCL 327
PWT+TA + LE+R QG L
Sbjct: 65 PWTVTATPYSLELRTTQQGTQITL 88
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 31.2 bits (71), Expect = 1.1
Identities = 54/334 (16%), Positives = 104/334 (31%), Gaps = 43/334 (12%)
Query: 15 GVVRMVFG-LLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFC 73
G++ M FG L L GRR + ++S L +V T +
Sbjct: 61 GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATN-----------VTQLL 109
Query: 74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H 129
IL ++A + ++E A RG + + +G + L L
Sbjct: 110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169
Query: 130 WRTVAW------LSLAYILI---PSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELK 180
WR++ + L L +L+ P + L R + + +A + +
Sbjct: 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQ 229
Query: 181 KMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSR 240
K + + + A I LL + L G+Y + + + ++G
Sbjct: 230 KATQGTKRSVF--KALFQGKTAR-ITVLLWLLYFM---LLVGVYFLTNWLPKLMVELGFS 283
Query: 241 MNVYLATVLVGVVRMVFG-LLTSQLLRTYGRRSLTMFSQIEKSLIPV-----------FC 288
+++ + V G ++ L G R + + +
Sbjct: 284 LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLL 343
Query: 289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQG 322
+ V G S + + A +P IR G
Sbjct: 344 LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVG 377
>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 31.1 bits (70), Expect = 1.3
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 163 KYLARNYKEVKNKEQELKK-MNSTKENQSLSARLIKMVTMATGIK---PLLVITVLFALQ 218
+L ++K+ LK + E + S+ ++ + G+K V T++FAL
Sbjct: 376 DFLDGRSLDLKSIGFFLKVELKKAGEFEKWSSYVVNEMNRKRGLKYEHIGCVATIIFALV 435
Query: 219 QLAGIYITIFYAVQFLEDMGSRMNVYLATVLV--GVVRM-----VFGLLTSQLLRTYGR- 270
L +I + F L V G++ G + +L T +
Sbjct: 436 FLYFAFIG-LLSTAFNT------VNTLFIFFVPLGIILFFSAGSTAGRWSKKLAETISKW 488
Query: 271 ----RSLTMFSQIEK 281
L+ +SQ+++
Sbjct: 489 QAFKNFLSDYSQLKE 503
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 30.2 bits (68), Expect = 2.2
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWF 342
+ + + FY +IS I + AE+FP ++R + GL++ +A+ L + +Y
Sbjct: 344 MCALLIVSFYTSISGI--------LKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS 395
Query: 343 KDSVGGSAMVQWFFALISVISIV 365
S+G W+ L++V++ +
Sbjct: 396 LKSIGMETAFFWYVTLMAVVAFL 418
>gnl|CDD|227012 COG4666, COG4666, TRAP-type uncharacterized transport system, fused
permease components [General function prediction only].
Length = 642
Score = 29.6 bits (67), Expect = 3.3
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
Query: 282 SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPW 341
S+I + LF++ + G+ + L +R I LA +L YP
Sbjct: 29 SVIAILLSLFHLYTASFGL----------LSLLIVRAIHLAFALALAFLL-------YPA 71
Query: 342 FKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGR 377
K + W A ++ + Y+ + E R
Sbjct: 72 SKLPRKRVPLYDWLLAAAALFAAFYLVLNYAELIFR 107
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 29.9 bits (67), Expect = 3.4
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLE-------------IRGIAQGLTFCLAH 329
L P++ +LF++ + +G+ S+ M + PL+ I G+ ++F +
Sbjct: 381 LSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPKSWPKEIITGLICLVSFLIGL 440
Query: 330 ILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY 368
I + + Y+ DS GS + A + S+VYVY
Sbjct: 441 IFVLGSGNYWLALFDSFAGSIPL-LIIAFCEMFSVVYVY 478
>gnl|CDD|147786 pfam05823, Gp-FAR-1, Nematode fatty acid retinoid binding protein
(Gp-FAR-1). Parasitic nematodes produce at least two
structurally novel classes of small helix-rich retinol-
and fatty-acid-binding proteins that have no
counterparts in their plant or animal hosts and thus
represent potential targets for new nematicides.
Gp-FAR-1 is a member of the nematode-specific
fatty-acid- and retinol-binding (FAR) family of proteins
but localises to the surface of the organism, placing it
in a strategic position for interaction with the host.
Gp-FAR-1 functions as a broad-spectrum retinol- and
fatty-acid-binding protein, and it is thought that it is
involved in the evasion of primary host plant defence
systems.
Length = 154
Score = 28.5 bits (64), Expect = 4.1
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 142 LIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKE-NQSLSARLIKM 198
LIP+ V K + +LK +A+N+K+ KN E E + + KE + SL A+ K+
Sbjct: 9 LIPAEVVEAYKSLTPEEKAALKEVAKNHKKFKN-EDEA--LAALKEKSPSLYAKAEKL 63
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 28.9 bits (65), Expect = 5.5
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 215 FALQQLAGIY-ITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSL 273
F L I + + L++ N+ + ++L+GV+ + GLL + RS
Sbjct: 429 FGPAVLLSTLPIGLLFVYHGLDEGLLFSNILILSLLIGVLHLSLGLLLG-FINRV--RSG 485
Query: 274 TMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILM 332
+ I L+ + IL + + + S+P + GI GL ++
Sbjct: 486 DIKGAILPQLLWLLIILGLLLLILGYKWSVPELLGMVGAMFGAFGIL-GLLVVGLILVP 543
>gnl|CDD|235339 PRK05084, xerS, site-specific tyrosine recombinase XerS; Reviewed.
Length = 357
Score = 28.7 bits (65), Expect = 5.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 154 RANQALKSL-KYLARNYKEVKNKEQE-------LKKMNSTKENQSLSAR 194
R ALKSL KYL E +N++ E +KK+ K+ ++L+AR
Sbjct: 108 RTLSALKSLFKYLTE---EAENEDGEPYFYRNVMKKIELKKKKETLAAR 153
>gnl|CDD|132281 TIGR03237, dnd_assoc_2, DNA phosphorothioation-dependent
restriction protein DptH. A DNA sulfur modification
(phosphorothioation) system, dnd (degradation during
electrophoresis), is sparsely and sporadically
distributed among the bacteria. This protein is one
member of a three-gene restriction enzyme cassette that
depends on DNA phosphorothioation [DNA metabolism,
Restriction/modification].
Length = 1256
Score = 29.1 bits (65), Expect = 6.0
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 150 LNKGRANQALKSLKYLAR------NYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMAT 203
LNKG A Q + R +K+ K +EQ+ ++ K N + A M M +
Sbjct: 803 LNKGAAQQEPDDILDFLRTRLTYSKFKKEKGEEQKYAHISFFKNNAQVRAADQSMDEMLS 862
Query: 204 GI 205
G+
Sbjct: 863 GV 864
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 28.9 bits (65), Expect = 6.6
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 23/107 (21%)
Query: 208 LLVITVLFALQQLAGIYITIFY------AVQFLEDMGSRMNVYLATVLVGVVRMVFGLLT 261
++ I +L+ I + A+ L M R ++ + + + ++ M+ L
Sbjct: 362 MIAIALLYLFGGSYNSEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLL-- 419
Query: 262 SQLLRTYGRRSLTMFSQIEKSLIPVFCILFYV-----AISVIGMLSI 303
SL + I ++ I V+G+L
Sbjct: 420 ----------SLIFAFTLSWYDALQDAIFAFLSGLLSGILVLGLLPY 456
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 28.5 bits (64), Expect = 7.7
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 18/137 (13%)
Query: 249 LVGVVRMVFGLLTSQLL--RTYG---RRSLTMFSQIEKSLIPVFCILFYVAISVIGMLS- 302
+VG + M+ G S LL R R + + + SL+ + + + +++
Sbjct: 262 IVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVAL 321
Query: 303 ---------IPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG---GSA 350
I W + ++ P I G+ GL L ++ + G G+
Sbjct: 322 GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGAL 381
Query: 351 MVQWFFALISVISIVYV 367
MV ALI +S + +
Sbjct: 382 MVVAALALIGALSYLLL 398
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.139 0.410
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,391,285
Number of extensions: 2143000
Number of successful extensions: 3702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3639
Number of HSP's successfully gapped: 207
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.8 bits)