RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6665
(420 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 77/445 (17%), Positives = 142/445 (31%), Gaps = 160/445 (35%)
Query: 58 LIMT-GQIEKS-LIPVFCILFYVAISVI-----AMGPSPA-------------------I 91
L ++ G +E L+P F++A S + + P P +
Sbjct: 9 LTLSHGSLEHVLLVPT--ASFFIA-SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 92 VYITEVARPDLRGALICIGPSITSLGMVIV-----YALGAVLHWRTVAWLSLAYILIPSP 146
Y++ + P G + L + + Y G +H +LA L+
Sbjct: 66 GYVSSLVEPSKVGQFDQV------LNLCLTEFENCYLEGNDIH-------ALAAKLLQEN 112
Query: 147 VWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIK 206
+ L K L +NY + + +S SA L + V G
Sbjct: 113 ---------DTTLVKTKELIKNYITARIM------AKRPFDKKSNSA-LFRAV--GEGNA 154
Query: 207 PLLVITVLFA--------LQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFG 258
L+ I F ++L +Y T Y V + D+ A L ++R
Sbjct: 155 QLVAI---FGGQGNTDDYFEELRDLYQT--YHV-LVGDLIKFS----AETLSELIR---- 200
Query: 259 LLTSQLLRTYGRRSLTMFSQIEK-SLIPVFCILFYVAISV--IGMLSIP-WTMTAEIF-- 312
T + + + L + +E S P L + IS IG++ + + +TA++
Sbjct: 201 -TTLDAEKVFTQ-GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 313 -PLEIRGIAQGLTFCLAHI------------------------LMFF----ALQYYPWF- 342
P E+R +G T + ++FF + YP
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 343 ------KDSVGG-----SAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCV 391
+DS+ S M+ S+ T ++++Y +
Sbjct: 319 LPPSILEDSLENNEGVPSPML-------SIS-------------NLTQEQVQDYVNKTNS 358
Query: 392 YACSKKRRASAAILQNQSPK-IVVS 415
+ ++ + L N K +VVS
Sbjct: 359 HL-PAGKQVEIS-LVN-GAKNLVVS 380
Score = 37.3 bits (86), Expect = 0.009
Identities = 47/303 (15%), Positives = 90/303 (29%), Gaps = 101/303 (33%)
Query: 8 YLATV-----LVGVVRM--------VFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSG- 53
YL ++ L+GV+++ + G +L R+Y + + GL AV + +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIAETDS 288
Query: 54 ---YYTQLIMTGQIEKSLIPVFCILFYV------AISVIAMGPSPAIVYITEVARPDLRG 104
++ + I +LF++ A ++ PS I E + + G
Sbjct: 289 WESFFVSVRKA--IT--------VLFFIGVRCYEAYPNTSLPPS-----ILEDSLENNEG 333
Query: 105 A----LICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRAN---- 156
L + + + H + ++ L+N G N
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNS---HLPAGKQVEIS---------LVN-GAKNLVVS 380
Query: 157 ---QALKSLKYLARNYKEVKNKEQELKKMNSTKENQS---LSARLIKMVTMATGIKPLLV 210
Q+L L R K + +QS S R +K L
Sbjct: 381 GPPQSLYGLNLTLRKAK------------APSGLDQSRIPFSERKLKFSNR------FLP 422
Query: 211 ITVLF-----------ALQQLAGIYITIFYA-----VQFLEDMGSRMNVYLATVLVGVVR 254
+ F + L ++ V D GS + V ++ +V
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVD 481
Query: 255 MVF 257
+
Sbjct: 482 CII 484
Score = 30.4 bits (68), Expect = 1.3
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 86 GPSPAI-VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYIL 142
I VY T DLR I I +I + W T +IL
Sbjct: 452 AKDIQIPVYDTFDGS-DLRVLSGSISERIVD--CIIRLPV----KWETTTQFKATHIL 502
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 58/410 (14%), Positives = 119/410 (29%), Gaps = 100/410 (24%)
Query: 17 VRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILF 76
+F L + + F + + I T Q + S++ ++
Sbjct: 64 TLRLFWTL-----LSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTR---MY 112
Query: 77 YVAISVIAMGPSPAIVYITEVARPD----LRGALICIGPS--ITSLGMV----IVYALGA 126
+ Y V+R LR AL+ + P+ + G++ AL
Sbjct: 113 IEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 127 VLHWRT-------VAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQEL 179
L ++ + WL+L P V L+ L+ L Y+ N
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETV-----------LEMLQKL--LYQIDPNWTSRS 217
Query: 180 KKMNSTKEN-QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY-ITIFYAVQFLEDM 237
++ K S+ A L +++ LLV L + + A F ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---------LLNVQNAKAWNA--F--NL 264
Query: 238 GSRM-----NVYLATVLVGVVRMVFGLLTSQLLRTYGRR-SLTMFSQI----EKSLIPVF 287
++ + L L T ++ + + L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 288 CILFYVAISVIGMLSIPWTMTAEIFP-LEIRGIAQGLTFCLAHIL------MFFALQYYP 340
+S+I T + + + + + L + MF L +P
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 341 WFKDSVGGSAMVQWFFALIS--VISIVY-------VYIFLPETHGRTLLE 381
S I ++S+++ V + + + H +L+E
Sbjct: 383 ---PSA-----------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.011
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 14/41 (34%)
Query: 175 KEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVI--TV 213
++Q LKK+ + SL K+ A P L I T+
Sbjct: 18 EKQALKKLQA-----SL-----KL--YADDSAPALAIKATM 46
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 33.1 bits (75), Expect = 0.19
Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 11/166 (6%)
Query: 221 AGIYITIFYAVQFLEDMGSRMNVYLA--TVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQ 278
GI+I Q E + V L ++V V + G L
Sbjct: 370 MGIFIAPLVGGQ--EPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLGNEWFLLGHQG 427
Query: 279 IEKSLIPVFCILFYVAISVIGMLSIPWTM-TAEIFPLEIRGIAQGLTFCLAHILMFFALQ 337
E + + V ++ + + + + G+ L + + F+
Sbjct: 428 WEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAIAVPFFYIFA 487
Query: 338 YYPWFKDSVGGSAMVQWFFALI------SVISIVYVYIFLPETHGR 377
++ + + +W+ + V ++V + L +
Sbjct: 488 FFIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLV 533
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 30.3 bits (68), Expect = 1.1
Identities = 40/371 (10%), Positives = 91/371 (24%), Gaps = 33/371 (8%)
Query: 13 LVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVF 72
+ + ++F L L G R ++ GM V + + G + + I V
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF----IFGPLLQYNILVG 106
Query: 73 CILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRT 132
I+ + + +PA+ E + +G +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166
Query: 133 VAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLS 192
L LL + A+ N + + L+
Sbjct: 167 QFVFWLGSGCALILAVLL-------------FFAKTDAPSSATVANAVGANHSAFSLKLA 213
Query: 193 ARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGV 252
L + + L + + + F+ F T + +
Sbjct: 214 LELFRQPKL---WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270
Query: 253 VRMVFGLLTSQLLRTYGRRSLTMFSQI-----------EKSLIPVFCILFYVAISVIGML 301
+ ++ G ++ + + S + V + V +L
Sbjct: 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330
Query: 302 SIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYP-WFKDSVGGSAMVQWFFALIS 360
+ F + + FC L + +S+G L++
Sbjct: 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY-LVLGLVA 389
Query: 361 VISIVYVYIFL 371
+ + L
Sbjct: 390 LGFTLISVFTL 400
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.2
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 157 QALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSAR 194
+A K L+ + E + ++ K N +
Sbjct: 115 KAKKDLEEWNQRQSE---QVEKNKINNRIADKAFYQQP 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.139 0.410
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,231,893
Number of extensions: 375054
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 21
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.7 bits)