RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6665
         (420 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 42/389 (10%), Positives = 103/389 (26%), Gaps = 20/389 (5%)

Query: 9   LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
            A   + +       +   +      R       +  A  M   G+            S 
Sbjct: 63  FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------SS 115

Query: 69  IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
           I V  +L ++      MG  P    +        RG ++ +     ++G  I   L  + 
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 129 HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN 188
                 W +  Y+     + +     A              +E KN   +     + +E 
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 189 QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATV 248
            +    +  ++         +    ++ L+     +   +        +      Y    
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295

Query: 249 LVGVVRMVFGLLTSQLLRTYGRRSLTMFS-------------QIEKSLIPVFCILFYVAI 295
             G+   +     S  +    R +  +F                  +       +  +  
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Query: 296 SVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWF 355
            + G + +      E+ P +  G A G T    ++    A      +     G       
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415

Query: 356 FALISVISIVYVYIFLPETHGRTLLEIEE 384
               S+++++ + + +     R    ++E
Sbjct: 416 MIGGSILAVILLIVVMIGEKRRHEQLLQE 444


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 40/375 (10%), Positives = 85/375 (22%), Gaps = 9/375 (2%)

Query: 9   LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
           +    + +  ++F  L   L    G R   ++   GM V       +    +        
Sbjct: 47  IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL------- 99

Query: 69  IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
              + IL    +  I +G           A  +              +   + +ALGA +
Sbjct: 100 --QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 129 HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN 188
                   +     + S   L+       A       A     V           + +  
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217

Query: 189 QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATV 248
           +      + +  +       +                     V         +       
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF 277

Query: 249 LVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMT 308
              ++    G   + LL         + S    S + V  +       V  +L   +   
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337

Query: 309 AEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY 368
              F +        + FC    L    +           G         L+++   +   
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397

Query: 369 IFLPETHGRTLLEIE 383
             L      +LL  +
Sbjct: 398 FTLSGPGPLSLLRRQ 412


>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex
           protein MED7 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 95

 Score = 26.7 bits (59), Expect = 1.7
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 131 RTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKE 187
           R V  +    + I     LLN+ R +Q+ +SL  L    ++++ K  E++++    +
Sbjct: 36  RKVENIRTILVNIHH---LLNEYRPHQSRESLIMLLE--EQLEYKRGEIREIEQVCK 87


>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus
           vulgaris [TaxId: 585]}
          Length = 156

 Score = 27.2 bits (60), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 352 VQWFFALISVISIVYVYIFLPE 373
           V W FA+   I+I  +Y   P+
Sbjct: 96  VPWIFAIYRGIAIEAIYRLEPK 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,473,707
Number of extensions: 66581
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 12
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.9 bits)