BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6666
(175 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307213815|gb|EFN89122.1| RNA polymerase II-associated factor 1-like protein [Harpegnathos
saltator]
Length = 533
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 106/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETLDKR+ D + ++Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 248 MDESGEQFVAYFLPLEETLDKRRRDFTAGIDYADEEEYEYKMAREYNWNVKSKASKGYEE 307
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQK G PNNTRL+V HRPLNA EFR+QR RE+ L
Sbjct: 308 NYFLVIRQDGVYYNELETRVRLSKRRQKAGQQPNNTRLIVRHRPLNAIEFRMQRYREKQL 367
Query: 121 EPP 123
EPP
Sbjct: 368 EPP 370
>gi|332022364|gb|EGI62676.1| RNA polymerase II-associated factor 1-like protein [Acromyrmex
echinatior]
Length = 581
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 107/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KR+ D + ++Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADEEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EFR+QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFRMQRYREKQL 369
Query: 121 EPP 123
EPP
Sbjct: 370 EPP 372
>gi|156550159|ref|XP_001606181.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nasonia
vitripennis]
Length = 572
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 107/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KRK D S ++Y DE EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRKRDFCSGIDYADEDEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R+D VYYNELETRVRLSKRRQKVGA NNTRLVV HRPLNA EF++QR RE+ L
Sbjct: 310 NYFLVMREDGVYYNELETRVRLSKRRQKVGAPVNNTRLVVRHRPLNANEFKMQRFREKQL 369
Query: 121 EPP 123
EPP
Sbjct: 370 EPP 372
>gi|156550709|ref|XP_001605818.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nasonia
vitripennis]
Length = 583
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 107/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KRK D S ++Y DE EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRKRDFCSGIDYADEDEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R+D VYYNELETRVRLSKRRQKVGA NNTRLVV HRPLNA E+++QR RE+ L
Sbjct: 310 NYFLVMREDGVYYNELETRVRLSKRRQKVGAPVNNTRLVVRHRPLNANEYKMQRFREKQL 369
Query: 121 EPP 123
EPP
Sbjct: 370 EPP 372
>gi|307199453|gb|EFN80066.1| RNA polymerase II-associated factor 1-like protein [Harpegnathos
saltator]
Length = 530
Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 106/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETLDKR+ D + ++Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLDKRRRDFTAGIDYADEEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQK G PNNTRL+V HRPLNA EFR+QR RE+ L
Sbjct: 310 NYFLVMRQDGVYYNELETRVRLSKRRQKAGQQPNNTRLIVRHRPLNALEFRMQRYREKQL 369
Query: 121 EPP 123
EPP
Sbjct: 370 EPP 372
>gi|307172366|gb|EFN63837.1| RNA polymerase II-associated factor 1-like protein [Camponotus
floridanus]
Length = 428
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 107/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KR+ D + ++Y D++EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADDEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EFR+QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFRMQRYREKQL 369
Query: 121 EPP 123
EPP
Sbjct: 370 EPP 372
>gi|383850476|ref|XP_003700821.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Megachile
rotundata]
Length = 554
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 104/120 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETLDKR+ D + ++Y D++EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLDKRRRDFTAGIDYADDEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EF++QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFKMQRYREKQL 369
>gi|340728168|ref|XP_003402400.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Bombus
terrestris]
Length = 562
Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 103/120 (85%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KR+ D + ++Y D+ EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRRRDFAAGIDYADDDEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EF++QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFKMQRYREKQL 369
>gi|350403064|ref|XP_003486690.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Bombus
impatiens]
Length = 562
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 103/120 (85%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KR+ D + ++Y D+ EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRRRDFAAGIDYADDDEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EF++QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFKMQRYREKQL 369
>gi|328787903|ref|XP_624998.3| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Apis mellifera]
Length = 549
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 104/120 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KR+ D + ++Y D++EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADDEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EF++QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFKMQRYREKQL 369
>gi|380011783|ref|XP_003689974.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Apis
florea]
Length = 548
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 104/120 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP ETL+KR+ D + ++Y D++EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPLEETLEKRRRDFTAGIDYADDEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNNTRL+V HRPLNA EF++QR RE+ L
Sbjct: 310 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNTRLIVRHRPLNANEFKMQRYREKQL 369
>gi|242010931|ref|XP_002426211.1| RNA polymerase-associated protein, putative [Pediculus humanus
corporis]
gi|212510262|gb|EEB13473.1| RNA polymerase-associated protein, putative [Pediculus humanus
corporis]
Length = 472
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 104/120 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT ETL KRK D +N++Y D+QEYEYKMAREYNWNVK+K+ KGYEE
Sbjct: 249 MDESGEQFVAYFLPTEETLAKRKADIQNNIDYEDDQEYEYKMAREYNWNVKNKASKGYEE 308
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL+VR+ +YYNELETRVRLSKRRQK G AP+NTRLV+ HRP+N E+++QR RE+ L
Sbjct: 309 NYFLVVREGGMYYNELETRVRLSKRRQKPGQAPSNTRLVIKHRPINEVEYKMQRFREKQL 368
>gi|270001899|gb|EEZ98346.1| hypothetical protein TcasGA2_TC000801 [Tribolium castaneum]
Length = 465
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 101/122 (82%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE GEQFVAYFLPT ETL KR+ D + + Y D++EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 221 MDERGEQFVAYFLPTEETLVKRREDFANEIPYQDDEEYEYKMAREYNWNVKSKASKGYEE 280
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D YYNELETRVRLSKRRQKVG +NTRL+V HRP++A EFR+QR RE+ L
Sbjct: 281 NYFFVIRQDGAYYNELETRVRLSKRRQKVGQPASNTRLIVKHRPMDANEFRMQRYREKQL 340
Query: 121 EP 122
EP
Sbjct: 341 EP 342
>gi|195396015|ref|XP_002056628.1| GJ11046 [Drosophila virilis]
gi|194143337|gb|EDW59740.1| GJ11046 [Drosophila virilis]
Length = 567
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 103/123 (83%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT TL+KR++D ++ Y D++EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEPTLEKRRIDFVAGELYKDDEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL+A E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDAMEHRMQRYRERQL 369
Query: 121 EPP 123
E P
Sbjct: 370 EVP 372
>gi|322778831|gb|EFZ09247.1| hypothetical protein SINV_08735 [Solenopsis invicta]
Length = 392
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 102/122 (83%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
++ESGEQ VAYFLP ETL+KR+ D + ++Y DE+EYEYK+AR+YNWNVKS + KGYEE
Sbjct: 229 VNESGEQLVAYFLPLEETLEKRRRDFAAGIDYADEEEYEYKLARQYNWNVKSIAFKGYEE 288
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D VYYNELETRVRLSKRRQKVG PNN RL+V HRPLNA EFR+Q+ RE L
Sbjct: 289 NYFLVIRQDGVYYNELETRVRLSKRRQKVGQQPNNMRLIVRHRPLNANEFRMQKYRENQL 348
Query: 121 EP 122
+P
Sbjct: 349 KP 350
>gi|195111787|ref|XP_002000458.1| GI10242 [Drosophila mojavensis]
gi|193917052|gb|EDW15919.1| GI10242 [Drosophila mojavensis]
Length = 575
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 102/123 (82%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT TL+KR+ D ++ Y D++EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTETTLEKRRADFVAGQLYKDDEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL+A E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDAMEHRMQRYRERQL 369
Query: 121 EPP 123
E P
Sbjct: 370 EVP 372
>gi|195454001|ref|XP_002074040.1| GK12821 [Drosophila willistoni]
gi|194170125|gb|EDW85026.1| GK12821 [Drosophila willistoni]
Length = 543
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 103/123 (83%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y D++EYE+K+AREYNWNVK+K+ KGYEE
Sbjct: 246 MDESGEQFVAYFLPTEQTLEKRRTDLVAGELYKDDEEYEFKIAREYNWNVKTKASKGYEE 305
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR K+G PNNT+LVV HRPL+A E R+QR RER L
Sbjct: 306 NYFFVMRQDGIYYNELETRVRLNKRRVKIGQQPNNTKLVVKHRPLDAMEHRMQRYRERQL 365
Query: 121 EPP 123
E P
Sbjct: 366 EVP 368
>gi|195497149|ref|XP_002095980.1| GE25435 [Drosophila yakuba]
gi|194182081|gb|EDW95692.1| GE25435 [Drosophila yakuba]
Length = 536
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 100/118 (84%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRTDFIAGELYKDEEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRER 118
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL++ E R+QR RER
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRER 367
>gi|157117813|ref|XP_001653048.1| hypothetical protein AaeL_AAEL001339 [Aedes aegypti]
gi|108883312|gb|EAT47537.1| AAEL001339-PA [Aedes aegypti]
Length = 549
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 107/123 (86%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP+ ETL+KR+ D ++ Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPSEETLEKRRRDLVNETLYEDEEEYEYKMAREYNWNVKSKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYFL++R D +YYNELETRVRLSKRRQKVG PNNT+LVV HRPLNA+E R+QR RER L
Sbjct: 310 NYFLVLRQDGMYYNELETRVRLSKRRQKVGQQPNNTKLVVKHRPLNASEHRMQRYRERQL 369
Query: 121 EPP 123
EPP
Sbjct: 370 EPP 372
>gi|194898602|ref|XP_001978858.1| GG12571 [Drosophila erecta]
gi|190650561|gb|EDV47816.1| GG12571 [Drosophila erecta]
Length = 538
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 101/120 (84%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRTDFIAGELYKDEEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL++ E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRERQL 369
>gi|195054373|ref|XP_001994099.1| GH22996 [Drosophila grimshawi]
gi|193895969|gb|EDV94835.1| GH22996 [Drosophila grimshawi]
Length = 566
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/123 (69%), Positives = 102/123 (82%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT TL+KR+ D ++ Y D++EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEPTLEKRRNDFVAGELYKDDEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR K+G PNNT+LVV HRPL+A E R+QR RER L
Sbjct: 310 NYFFVMRPDGIYYNELETRVRLNKRRVKLGQQPNNTKLVVKHRPLDAIEHRMQRYRERQL 369
Query: 121 EPP 123
E P
Sbjct: 370 EVP 372
>gi|198454011|ref|XP_001359430.2| GA15378 [Drosophila pseudoobscura pseudoobscura]
gi|198132611|gb|EAL28576.2| GA15378 [Drosophila pseudoobscura pseudoobscura]
Length = 559
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 99/120 (82%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y +E EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRADFIAGELYNEEAEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL A E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVHHRPLEAVEHRMQRYRERQL 369
>gi|195152704|ref|XP_002017276.1| GL21617 [Drosophila persimilis]
gi|194112333|gb|EDW34376.1| GL21617 [Drosophila persimilis]
Length = 559
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 99/120 (82%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y +E EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRADFIAGELYNEEAEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL A E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVHHRPLEAVEHRMQRYRERQL 369
>gi|328722735|ref|XP_001944291.2| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Acyrthosiphon pisum]
Length = 568
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 98/124 (79%), Gaps = 2/124 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLP+ ET+ KR+ D + Y D+ EYEYKMAREYNWNVKSKS KGYEE
Sbjct: 247 MDESGEQFVAYFLPSEETIVKRREDAVEARPYDDDYEYEYKMAREYNWNVKSKSSKGYEE 306
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVG--AAPNNTRLVVTHRPLNATEFRIQRLRER 118
NYF IV+ D VYYNELETRVRLSKRRQK+G ++ NTRL+V H P+N EF + + RE+
Sbjct: 307 NYFFIVQSDGVYYNELETRVRLSKRRQKIGTQSSSTNTRLIVRHVPINEQEFSVHKFREK 366
Query: 119 FLEP 122
L+P
Sbjct: 367 QLQP 370
>gi|170054859|ref|XP_001863321.1| antimeros [Culex quinquefasciatus]
gi|167875008|gb|EDS38391.1| antimeros [Culex quinquefasciatus]
Length = 548
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 137/167 (82%), Gaps = 1/167 (0%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT ETL+KR+ D ++ Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 249 MDESGEQFVAYFLPTEETLEKRRRDLVNETLYEDEEEYEYKMAREYNWNVKSKASKGYEE 308
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NY+L++R D +YYNELETRVRLSKRRQKVG PNNT+LVV HRPLNA E R+QR RER L
Sbjct: 309 NYYLVLRQDGMYYNELETRVRLSKRRQKVGQPPNNTKLVVKHRPLNAPEHRMQRYRERQL 368
Query: 121 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGE 167
EPP EE+EE+ E+EE EE+EE +Q + E++ EGE G+REG GE
Sbjct: 369 EPPGEEDEEDIEDEEPEESEEEEQEQLPESQEPEGE-GKREGDDNGE 414
>gi|391347356|ref|XP_003747930.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Metaseiulus occidentalis]
Length = 520
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/123 (69%), Positives = 96/123 (78%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYF+PT ETL KR+ D + +EY DE +YEYKM REYNWNVK+K+ GYEE
Sbjct: 243 MDESGEQFVAYFMPTEETLRKRQDDAENKVEYQDEVDYEYKMTREYNWNVKNKTSSGYEE 302
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF VRD +YYNELETRVRLSKRR K G APNN++LVV HR LN E R Q+LR L
Sbjct: 303 NYFFAVRDGCIYYNELETRVRLSKRRLKPGMAPNNSKLVVKHRVLNENEHRQQQLRLSQL 362
Query: 121 EPP 123
EPP
Sbjct: 363 EPP 365
>gi|391347358|ref|XP_003747931.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 2
[Metaseiulus occidentalis]
Length = 525
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/123 (69%), Positives = 96/123 (78%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYF+PT ETL KR+ D + +EY DE +YEYKM REYNWNVK+K+ GYEE
Sbjct: 248 MDESGEQFVAYFMPTEETLRKRQDDAENKVEYQDEVDYEYKMTREYNWNVKNKTSSGYEE 307
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF VRD +YYNELETRVRLSKRR K G APNN++LVV HR LN E R Q+LR L
Sbjct: 308 NYFFAVRDGCIYYNELETRVRLSKRRLKPGMAPNNSKLVVKHRVLNENEHRQQQLRLSQL 367
Query: 121 EPP 123
EPP
Sbjct: 368 EPP 370
>gi|427796871|gb|JAA63887.1| Putative rna polymerase ii-associated factor 1, partial
[Rhipicephalus pulchellus]
Length = 619
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 96/123 (78%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +T+ KRK D ++Y D+ EYEY+MAREYNWNVK+K+ KGYEE
Sbjct: 392 MDESGEQFVAYFLPTEDTIKKRKRDAEEGMDYMDDDEYEYRMAREYNWNVKNKASKGYEE 451
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF + RDD VYYNELETRVRL+KRR K G PNN++LVV HRPLN E + Q+ R L
Sbjct: 452 NYFFVFRDDGVYYNELETRVRLTKRRLKPGVQPNNSKLVVRHRPLNEMEHKTQQARLTQL 511
Query: 121 EPP 123
E P
Sbjct: 512 EQP 514
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMA 43
MDESGEQFVAYFLPT +T+ KRK D ++Y D+ EYEY+MA
Sbjct: 328 MDESGEQFVAYFLPTEDTIKKRKRDAEEGMDYMDDDEYEYRMA 370
>gi|427789477|gb|JAA60190.1| Putative paf1 [Rhipicephalus pulchellus]
Length = 469
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 96/123 (78%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +T+ KRK D ++Y D+ EYEY+MAREYNWNVK+K+ KGYEE
Sbjct: 242 MDESGEQFVAYFLPTEDTIKKRKRDAEEGMDYMDDDEYEYRMAREYNWNVKNKASKGYEE 301
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF + RDD VYYNELETRVRL+KRR K G PNN++LVV HRPLN E + Q+ R L
Sbjct: 302 NYFFVFRDDGVYYNELETRVRLTKRRLKPGVQPNNSKLVVRHRPLNEMEHKTQQARLTQL 361
Query: 121 EPP 123
E P
Sbjct: 362 EQP 364
>gi|346470299|gb|AEO34994.1| hypothetical protein [Amblyomma maculatum]
Length = 475
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 96/123 (78%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +T+ KRK D ++Y DE EYEY+MAREYNWNVK+K+ KGYEE
Sbjct: 242 MDESGEQFVAYFLPTEDTIKKRKRDAEEGVDYMDEDEYEYRMAREYNWNVKNKASKGYEE 301
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF + R+D VYYNELETRVRL+KRR K G PNN++LVV HRPLN E + Q+ R L
Sbjct: 302 NYFFVFREDGVYYNELETRVRLTKRRLKPGVQPNNSKLVVRHRPLNENEHKTQQARLTQL 361
Query: 121 EPP 123
+ P
Sbjct: 362 DQP 364
>gi|241825632|ref|XP_002416619.1| conserved hypothetical protein [Ixodes scapularis]
gi|215511083|gb|EEC20536.1| conserved hypothetical protein [Ixodes scapularis]
Length = 431
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 91/113 (80%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +T+ KRK D +EY DE EYEY+MAREYNWNVK+K+ KGYEE
Sbjct: 227 MDESGEQFVAYFLPTEDTIRKRKRDAEEKVEYMDEDEYEYRMAREYNWNVKNKASKGYEE 286
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQ 113
NYF + R+D V+YNELETRVRLSKRR K G PNN++LVV HRPLN E + Q
Sbjct: 287 NYFFVFREDGVFYNELETRVRLSKRRLKPGVQPNNSKLVVRHRPLNEVEHKTQ 339
>gi|347965688|ref|XP_321844.5| AGAP001302-PA [Anopheles gambiae str. PEST]
gi|333470395|gb|EAA01198.5| AGAP001302-PA [Anopheles gambiae str. PEST]
Length = 565
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/122 (72%), Positives = 103/122 (84%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 248 MDESGEQFVAYFLPTDDTLEKRRRDLVNETLYEDEEEYEYKMAREYNWNVKSKASKGYEE 307
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NY+L++R D +YYNELETRVRLSKRRQK +NT+LVV HRPLNA+E R+QR RER L
Sbjct: 308 NYYLVLRPDGIYYNELETRVRLSKRRQKNAQQQSNTKLVVKHRPLNASEHRMQRYRERQL 367
Query: 121 EP 122
EP
Sbjct: 368 EP 369
>gi|312374080|gb|EFR21724.1| hypothetical protein AND_16488 [Anopheles darlingi]
Length = 788
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 1/161 (0%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y DE+EYEYKMAREYNWNVKSK+ KGYEE
Sbjct: 267 MDESGEQFVAYFLPTEDTLEKRRRDLVNETLYEDEEEYEYKMAREYNWNVKSKASKGYEE 326
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NY+L++R D +YYNELETRVRLSKRRQK +NT+LVV HR LNA+E R+QR RER L
Sbjct: 327 NYYLVLRQDGIYYNELETRVRLSKRRQKNAQQQSNTKLVVKHRSLNASEHRMQRYRERQL 386
Query: 121 EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGERE 161
EPP EE++E+ EEEEEEE EE + + TEA + + +GG++E
Sbjct: 387 EPPGEEDDEDIEEEEEEEEEEEESIQQTEATKAD-DGGKQE 426
>gi|391347419|ref|XP_003747960.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Metaseiulus occidentalis]
Length = 397
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 95/123 (77%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYF+PT ETL KR+ D + +EY DE +YEY+M REYNWNVK+K+ GY+E
Sbjct: 243 MDESGEQFVAYFMPTEETLRKRQNDAENKVEYQDEVDYEYEMTREYNWNVKNKTSSGYDE 302
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF VRD +YYNELETRVRLSKRR + G APNN+ LVV HR LN E R Q+LR L
Sbjct: 303 NYFFAVRDGCIYYNELETRVRLSKRRLEPGMAPNNSELVVKHRVLNENEHRQQQLRLSQL 362
Query: 121 EPP 123
EPP
Sbjct: 363 EPP 365
>gi|357627369|gb|EHJ77088.1| hypothetical protein KGM_06557 [Danaus plexippus]
Length = 587
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAY LPT +T+ KR+ D + Y D YEYKMAREYNWNVKSK+ KGYEE
Sbjct: 248 MDESGEQFVAYCLPTEDTIQKRRRDITEGIPYMDGDTYEYKMAREYNWNVKSKASKGYEE 307
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNN-TRLVVTHRPLNATEFRIQRLRERF 119
NYFL+VR+ +YYNELETRVRLSKRR + GAA TRLVVTHRPLNA E RI RLRE+
Sbjct: 308 NYFLVVRNHCIYYNELETRVRLSKRRARAGAAAQALTRLVVTHRPLNAAEHRILRLREKQ 367
Query: 120 LEP 122
LEP
Sbjct: 368 LEP 370
>gi|21355457|ref|NP_649493.1| antimeros, isoform A [Drosophila melanogaster]
gi|442617435|ref|NP_001262263.1| antimeros, isoform B [Drosophila melanogaster]
gi|7296819|gb|AAF52095.1| antimeros, isoform A [Drosophila melanogaster]
gi|17944277|gb|AAL48032.1| LD37523p [Drosophila melanogaster]
gi|220946232|gb|ACL85659.1| atms-PA [synthetic construct]
gi|220955924|gb|ACL90505.1| atms-PA [synthetic construct]
gi|440217065|gb|AGB95646.1| antimeros, isoform B [Drosophila melanogaster]
Length = 538
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 101/120 (84%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL++ E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRERQL 369
>gi|195343495|ref|XP_002038333.1| GM10775 [Drosophila sechellia]
gi|195568273|ref|XP_002102142.1| GD19748 [Drosophila simulans]
gi|194133354|gb|EDW54870.1| GM10775 [Drosophila sechellia]
gi|194198069|gb|EDX11645.1| GD19748 [Drosophila simulans]
Length = 538
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 101/120 (84%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL++ E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRERQL 369
>gi|194746540|ref|XP_001955738.1| GF18911 [Drosophila ananassae]
gi|190628775|gb|EDV44299.1| GF18911 [Drosophila ananassae]
Length = 548
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 100/120 (83%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRADFVAGELYKEEEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL+ E R+QR RER L
Sbjct: 310 NYFFVMRPDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDGMEHRMQRYRERQL 369
>gi|321456015|gb|EFX67133.1| hypothetical protein DAPPUDRAFT_302221 [Daphnia pulex]
Length = 507
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 101/126 (80%), Gaps = 1/126 (0%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE+GEQFVAYFLPT+ETL KR D +++Y D EY+YKMAR+Y+WNVKSK+ KGYEE
Sbjct: 254 MDETGEQFVAYFLPTSETLTKRARDASQSVDYDDNDEYDYKMARQYHWNVKSKASKGYEE 313
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVG-AAPNNTRLVVTHRPLNATEFRIQRLRERF 119
NYF++ RDDAVYYNELETRVRL+KRR K G A +NTRLV+ HR L + E R+ R RER
Sbjct: 314 NYFIVFRDDAVYYNELETRVRLTKRRPKPGEPATSNTRLVLKHRSLTSREHRMFRQRERQ 373
Query: 120 LEPPNE 125
LEP N+
Sbjct: 374 LEPANQ 379
>gi|149722114|ref|XP_001498010.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Equus
caballus]
Length = 524
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+D E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKDSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|354483435|ref|XP_003503898.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Cricetulus griseus]
Length = 524
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 119/194 (61%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 241 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 300
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 301 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 360
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E++R+EG E
Sbjct: 361 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESDREEGDREE 418
Query: 157 GGEREGGGEGEISE 170
G ++ G GE E SE
Sbjct: 419 GSDKSGSGEDESSE 432
>gi|344236939|gb|EGV93042.1| RNA polymerase II-associated factor 1-like [Cricetulus griseus]
Length = 537
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 119/194 (61%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 254 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 313
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 314 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 373
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E++R+EG E
Sbjct: 374 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESDREEGDREE 431
Query: 157 GGEREGGGEGEISE 170
G ++ G GE E SE
Sbjct: 432 GSDKSGSGEDESSE 445
>gi|432090694|gb|ELK24034.1| RNA polymerase II-associated factor 1 like protein [Myotis davidii]
Length = 522
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/189 (48%), Positives = 116/189 (61%), Gaps = 26/189 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 359
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+D E+E +E+ + G +E+ER+EG E
Sbjct: 360 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKDSSSEKEGSEDERSG--SESEREEGDRDE 417
Query: 157 GGEREGGGE 165
++ G GE
Sbjct: 418 ASDKSGSGE 426
>gi|7023594|dbj|BAA92020.1| unnamed protein product [Homo sapiens]
Length = 531
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 370 QLENHEPEGEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|42476169|ref|NP_061961.2| RNA polymerase II-associated factor 1 homolog isoform 1 [Homo
sapiens]
gi|182670295|sp|Q8N7H5.2|PAF1_HUMAN RecName: Full=RNA polymerase II-associated factor 1 homolog;
Short=hPAF1; AltName: Full=Pancreatic differentiation
protein 2
gi|12054502|emb|CAC20564.1| PD2 protein [Homo sapiens]
gi|12652555|gb|AAH00017.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Homo sapiens]
gi|15426567|gb|AAH13402.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Homo sapiens]
gi|119577284|gb|EAW56880.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119577286|gb|EAW56882.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123981872|gb|ABM82765.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[synthetic construct]
gi|123996701|gb|ABM85952.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[synthetic construct]
Length = 531
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|343960825|dbj|BAK62002.1| hypothetical protein [Pan troglodytes]
gi|410208516|gb|JAA01477.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
gi|410248688|gb|JAA12311.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
gi|410292268|gb|JAA24734.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
gi|410342695|gb|JAA40294.1| Paf1, RNA polymerase II associated factor, homolog [Pan
troglodytes]
Length = 533
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|343958600|dbj|BAK63155.1| hypothetical protein [Pan troglodytes]
Length = 523
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 359
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 360 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 417
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 418 ASDKSGSGEDESSE 431
>gi|397482135|ref|XP_003812288.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pan
paniscus]
Length = 533
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|443724677|gb|ELU12581.1| hypothetical protein CAPTEDRAFT_117955 [Capitella teleta]
Length = 443
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DESG+QFVAYFLPT ET+ KRK D + L+Y +E EY+Y +AREYNWNVK+K+ KGYEE
Sbjct: 232 VDESGDQFVAYFLPTEETIKKRKRDADNTLDYQEEDEYDYTLAREYNWNVKNKASKGYEE 291
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPN-NTRLVVTHRPLNATEFRIQ 113
YF V++D V+YNELETRVRLSKRR+ P+ +RLVV HRPLNA E + Q
Sbjct: 292 TYFFTVKEDGVFYNELETRVRLSKRRKAGQTGPSAKSRLVVKHRPLNAVELQAQ 345
>gi|332242502|ref|XP_003270424.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nomascus
leucogenys]
Length = 535
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|390478984|ref|XP_002762162.2| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Callithrix jacchus]
Length = 525
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|403305255|ref|XP_003943183.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Saimiri
boliviensis boliviensis]
Length = 529
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|197099574|ref|NP_001125634.1| RNA polymerase II-associated factor 1 homolog [Pongo abelii]
gi|75041948|sp|Q5RAX0.1|PAF1_PONAB RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|55728701|emb|CAH91090.1| hypothetical protein [Pongo abelii]
Length = 533
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|291389992|ref|XP_002711498.1| PREDICTED: Paf1, RNA polymerase II associated factor, homolog
[Oryctolagus cuniculus]
Length = 527
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEASEDERSG--SESEREEGDREE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|351706483|gb|EHB09402.1| RNA polymerase II-associated factor 1-like protein [Heterocephalus
glaber]
Length = 535
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGVSDEEHEKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|291236098|ref|XP_002737978.1| PREDICTED: antimeros-like [Saccoglossus kowalevskii]
Length = 533
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 87/122 (71%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DES EQFV YFLP ET KRK D ++YT E+EYEYKMAREYNWNVK+K+ KGYEE
Sbjct: 281 VDESDEQFVGYFLPNEETRQKRKRDVEEGIDYTPEEEYEYKMAREYNWNVKNKATKGYEE 340
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF +VRDD VYYNELETRVRLSKRR K +N+ L+V HR L E Q R L
Sbjct: 341 NYFFVVRDDGVYYNELETRVRLSKRRVKGPVVSSNSVLIVKHRELTEGESSQQEARLLQL 400
Query: 121 EP 122
EP
Sbjct: 401 EP 402
>gi|114052767|ref|NP_001039758.1| RNA polymerase II-associated factor 1 homolog [Bos taurus]
gi|122136137|sp|Q2KJ14.1|PAF1_BOVIN RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|86827732|gb|AAI05571.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Bos taurus]
gi|440910331|gb|ELR60139.1| RNA polymerase II-associated factor 1-like protein [Bos grunniens
mutus]
Length = 532
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEP-------------------PNEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGASDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|31980912|ref|NP_062331.2| RNA polymerase II-associated factor 1 homolog [Mus musculus]
gi|81901032|sp|Q8K2T8.1|PAF1_MOUSE RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|20987627|gb|AAH29843.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Mus musculus]
gi|53733817|gb|AAH83337.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Mus musculus]
gi|74138249|dbj|BAE28608.1| unnamed protein product [Mus musculus]
gi|148692192|gb|EDL24139.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_b [Mus musculus]
Length = 535
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|7670494|dbj|BAA95098.1| unnamed protein product [Mus musculus]
Length = 535
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|301784041|ref|XP_002927430.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Ailuropoda melanoleuca]
Length = 528
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|148692191|gb|EDL24138.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 470
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 185 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 244
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 245 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 304
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E++R+EG E
Sbjct: 305 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESDREEGDRDE 362
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 363 ASDKSGSGEDESSE 376
>gi|281344083|gb|EFB19667.1| hypothetical protein PANDA_017209 [Ailuropoda melanoleuca]
Length = 513
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 235 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 294
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 295 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 354
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 355 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 412
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 413 ASDKSGSGEDESSE 426
>gi|417402499|gb|JAA48096.1| Putative rna polymerase ii regulator [Desmodus rotundus]
Length = 539
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E+ER++G E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREDGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|335302328|ref|XP_003359435.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Sus
scrofa]
Length = 532
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|426242871|ref|XP_004015294.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Ovis
aries]
Length = 532
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|417402890|gb|JAA48275.1| Putative rna polymerase ii regulator [Desmodus rotundus]
Length = 572
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 283 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 342
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 343 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 402
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E+ER++G E
Sbjct: 403 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREDGDRDE 460
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 461 ASDKSGSGEDESSE 474
>gi|73947660|ref|XP_533675.2| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Canis lupus familiaris]
gi|410983062|ref|XP_003997863.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Felis
catus]
Length = 528
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|67846072|ref|NP_001020069.1| RNA polymerase II-associated factor 1 homolog [Rattus norvegicus]
gi|81908653|sp|Q4V886.1|PAF1_RAT RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|66911741|gb|AAH97494.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Rattus norvegicus]
gi|149056464|gb|EDM07895.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
[Rattus norvegicus]
Length = 535
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGGSDEEHEKGSSSEKEGSEDERSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|395859720|ref|XP_003802180.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Otolemur garnettii]
Length = 533
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|348563022|ref|XP_003467307.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Cavia
porcellus]
Length = 535
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+E++EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKETGGSDEEHEKGSSSEKEGSEDERSG--SESEQEEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|74147922|dbj|BAE22315.1| unnamed protein product [Mus musculus]
Length = 534
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKR+ K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRQAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|348505228|ref|XP_003440163.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Oreochromis niloticus]
Length = 535
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 106/156 (67%), Gaps = 5/156 (3%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK D ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPNEETLRKRKRDCEEGIDYMPDDLYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I RD D VYYNELETRVRLSKRR K GA + N LV HR +N E Q R+
Sbjct: 310 NYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVCKHRDMNEKELEAQEARKA 369
Query: 119 FL---EPPNEEEEEEDEEEEEEEAEETQQGETTEAE 151
L EP +EEE+ + ++E ++ +E ++G +EAE
Sbjct: 370 QLENHEPEDEEEDMDMDKETQDSGDEKEKGSGSEAE 405
>gi|147902583|ref|NP_001086458.1| RNA polymerase II-associated factor 1 homolog [Xenopus laevis]
gi|171769536|sp|A2BD83.1|PAF1_XENLA RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|122936408|gb|AAI30058.1| Paf1 protein [Xenopus laevis]
Length = 524
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 106/164 (64%), Gaps = 2/164 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVVKHRDMHEKELEAQEARRA 369
Query: 119 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG 162
LE EEEEE E + + + + ++GE +EG G E+ G
Sbjct: 370 QLENHEPEEEEEIEVDRDTQGSDAEEGEKGSGSEKEGSGAEQSG 413
>gi|355703537|gb|EHH30028.1| hypothetical protein EGK_10597 [Macaca mulatta]
gi|355755821|gb|EHH59568.1| hypothetical protein EGM_09708 [Macaca fascicularis]
gi|380787111|gb|AFE65431.1| RNA polymerase II-associated factor 1 homolog [Macaca mulatta]
gi|383411397|gb|AFH28912.1| RNA polymerase II-associated factor 1 homolog [Macaca mulatta]
gi|384940428|gb|AFI33819.1| RNA polymerase II-associated factor 1 homolog [Macaca mulatta]
Length = 531
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQE---GE 156
LE ++EE+E+ E+E +E+ + G +E+ER+E E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEVDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|402905498|ref|XP_003915556.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Papio
anubis]
Length = 530
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 115/193 (59%), Gaps = 25/193 (12%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FL------------------EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQE---GEG 157
L E +EEE+ E+E +E+ + G +E+ER+E E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEEKGSSSEKEGSEDERSG--SESEREEVDRDEA 427
Query: 158 GEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 SDKSGSGEDESSE 440
>gi|90084485|dbj|BAE91084.1| unnamed protein product [Macaca fascicularis]
Length = 531
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQE---GE 156
LE ++EE+E+ E+E +E+ + G +E+ER+E E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEVDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>gi|426388666|ref|XP_004060754.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 1
[Gorilla gorilla gorilla]
Length = 533
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 114/192 (59%), Gaps = 22/192 (11%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQE-GEGG 158
LE ++EE+E+ E+E +E+ + G +E E + E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSGSESEREGDDRDEAS 429
Query: 159 EREGGGEGEISE 170
++ G GE E SE
Sbjct: 430 DKSGSGEDESSE 441
>gi|431920159|gb|ELK18198.1| RNA polymerase II-associated factor 1 like protein [Pteropus
alecto]
Length = 537
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 116/194 (59%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ GE E SE
Sbjct: 428 ASDKSVSGEDESSE 441
>gi|145587688|ref|NP_001019624.1| RNA polymerase II-associated factor 1 homolog [Danio rerio]
gi|82277925|sp|Q4U0S5.1|PAF1_DANRE RecName: Full=RNA polymerase II-associated factor 1 homolog;
AltName: Full=PD2-like protein
gi|66277459|gb|AAY44602.1| PD2-like protein [Danio rerio]
gi|141795323|gb|AAI39614.1| Paf1l protein [Danio rerio]
Length = 503
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK D L+Y E+ YEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I RD D VYYNELETRVRLSKRR KVGA + N LV HR +N E Q R+
Sbjct: 310 NYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSSTNAVLVCKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>gi|55726317|emb|CAH89930.1| hypothetical protein [Pongo abelii]
Length = 534
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 118/195 (60%), Gaps = 27/195 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETR-VRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETR VRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 369
Query: 118 RFLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG--- 155
LE ++EE+E+ E+E +E+ + G +E+ER+EG
Sbjct: 370 AQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEGDRD 427
Query: 156 EGGEREGGGEGEISE 170
E ++ G GE E SE
Sbjct: 428 EASDKSGSGEDESSE 442
>gi|349803071|gb|AEQ17008.1| putative paf1 protein [Pipa carvalhoi]
Length = 232
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ L+Y ++ Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 15 MDEEGNQFVAYFLPGEETMRKRKRDQDEGLDYMADEIYDYKIAREYNWNVKNKASKGYEE 74
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R
Sbjct: 75 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVVKHRDMNEKELEAQEARRA 134
Query: 119 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGE 159
LE EEEEE E ++E + + + GE + G G E
Sbjct: 135 QLENHEPEEEEEIEVDQETQGSDAEDGEKGSESEKGGSGAE 175
>gi|126272991|ref|XP_001372133.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Monodelphis domestica]
Length = 527
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ ++YT + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETMRKRKRDQEEEMDYTPDDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K GA + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGAQSGTNALLVVKHRNMNEKELEAQEARKA 369
Query: 119 FL 120
L
Sbjct: 370 QL 371
>gi|444732083|gb|ELW72402.1| RNA polymerase II-associated factor 1 like protein [Tupaia
chinensis]
Length = 523
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 109/177 (61%), Gaps = 23/177 (12%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 359
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEGE 156
LE ++EE+E+ E+E +E+ G +E+ER+EG+
Sbjct: 360 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEASEDEHSG--SESEREEGD 414
>gi|45361543|ref|NP_989348.1| RNA polymerase II-associated factor 1 homolog [Xenopus (Silurana)
tropicalis]
gi|82186238|sp|Q6P2Y1.1|PAF1_XENTR RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|39850160|gb|AAH64253.1| Paf1, RNA polymerase II associated factor, homolog [Xenopus
(Silurana) tropicalis]
Length = 520
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 107/166 (64%), Gaps = 9/166 (5%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVVKHRDMHEKELEAQEARRA 369
Query: 119 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGG 164
LE EEEEE E ++E + + + GE +G G E+EG G
Sbjct: 370 QLENHEPEEEEEIEVDQETQGSDAEDGE-------KGSGSEKEGSG 408
>gi|395526010|ref|XP_003765168.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Sarcophilus harrisii]
Length = 211
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 11 MDEEGNQFVAYFLPVEETMRKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 70
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 71 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 129
>gi|344298406|ref|XP_003420884.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Loxodonta
africana]
Length = 499
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 368
>gi|432889892|ref|XP_004075383.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Oryzias
latipes]
Length = 534
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 105/154 (68%), Gaps = 3/154 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK D +EY + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 251 MDEEGNQFVAYFLPHEETLRKRKRDSEEGVEYMADDVYDYKIAREYNWNVKNKASKGYEE 310
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I RD D VYYNELETRVRLSKRR K GA + N LV HR +N E Q R+
Sbjct: 311 NYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVCKHRDMNEKELEAQEARKA 370
Query: 119 FLEPPNEEEEEEDEEEE-EEEAEETQQGETTEAE 151
LE E+EEED +++ ++ +E ++G +EAE
Sbjct: 371 QLENHEPEDEEEDLDKDMQDSGDEKEKGSGSEAE 404
>gi|12857167|dbj|BAB30913.1| unnamed protein product [Mus musculus]
Length = 377
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>gi|395501648|ref|XP_003755203.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Sarcophilus harrisii]
Length = 529
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETMRKRKRDQEEKMDYAPDDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRNMNEKELEAQEARK 368
>gi|3287674|gb|AAC25503.1| F23149_1 [Homo sapiens]
gi|119577285|gb|EAW56881.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 510
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 117/206 (56%), Gaps = 38/206 (18%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 217 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 276
Query: 61 NYFLIVRD-DAVYYNELETR------------VRLSKRRQKVGA-APNNTRLVVTHRPLN 106
NYF I R+ D VYYNELETR VRLSKRR K G + N LVV HR +N
Sbjct: 277 NYFFIFREGDGVYYNELETRYSAHSYLISLDLVRLSKRRAKAGVQSGTNALLVVKHRDMN 336
Query: 107 ATEFRIQRLRERFLEPP-------------------NEEEEEEDEEEEEEEAEETQQGET 147
E Q R+ LE ++EE+E+ E+E +E+ G
Sbjct: 337 EKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG-- 394
Query: 148 TEAERQEG---EGGEREGGGEGEISE 170
+E+ER+EG E ++ G GE E SE
Sbjct: 395 SESEREEGDRDEASDKSGSGEDESSE 420
>gi|223648724|gb|ACN11120.1| RNA polymerase II-associated factor 1 homolog [Salmo salar]
Length = 536
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK D L+Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 251 MDEEGNQFVAYFLPNEETIRKRKRDVDEELDYMPDDLYDYKIAREYNWNVKNKASKGYEE 310
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I RD D VYYNELETRVRLSKRR K GA + N LV HR +N E Q R+
Sbjct: 311 NYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVCKHRDMNDKELEAQDARK 369
>gi|326918213|ref|XP_003205385.1| PREDICTED: RNA polymerase II-associated factor 1 homolog, partial
[Meleagris gallopavo]
Length = 385
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 193 MDEEGNQFVAYFLPVEETLRKRKRDQEEEMDYAPEDVYDYKIAREYNWNVKNKASKGYEE 252
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLR 116
NYF I R+ D VYYNELETRVRLSKRR + G + N LVV HR +N E Q R
Sbjct: 253 NYFFIFREGDGVYYNELETRVRLSKRRARAGVQSGTNAVLVVKHRDMNEKELEAQEAR 310
>gi|213512601|ref|NP_001133500.1| RNA polymerase II-associated factor 1 homolog [Salmo salar]
gi|209154248|gb|ACI33356.1| RNA polymerase II-associated factor 1 homolog [Salmo salar]
Length = 532
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK D L+Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 251 MDEEGNQFVAYFLPNEETIRKRKRDVDEELDYMPDDLYDYKIAREYNWNVKNKASKGYEE 310
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I RD D VYYNELETRVRLSKRR K GA + N LV HR +N E Q R+
Sbjct: 311 NYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVCKHRDMNDKELEAQDARK 369
>gi|126329111|ref|XP_001363052.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Monodelphis domestica]
Length = 551
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETMRKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 368
>gi|296477828|tpg|DAA19943.1| TPA: RNA polymerase II-associated factor 1 homolog [Bos taurus]
Length = 386
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 368
>gi|395859722|ref|XP_003802181.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 2
[Otolemur garnettii]
Length = 484
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 358
>gi|363746155|ref|XP_003643545.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Gallus
gallus]
Length = 617
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 350 MDEEGNQFVAYFLPVEETLRKRKRDQEEEMDYAPEDVYDYKIAREYNWNVKNKASKGYEE 409
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLR 116
NYF I R+ D VYYNELETRVRLSKRR + G + N LVV HR +N E Q R
Sbjct: 410 NYFFIFREGDGVYYNELETRVRLSKRRARAGVQSGTNAVLVVKHRDMNEKELEAQEAR 467
>gi|426388668|ref|XP_004060755.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 2
[Gorilla gorilla gorilla]
Length = 487
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 358
>gi|378744165|ref|NP_001243755.1| RNA polymerase II-associated factor 1 homolog isoform 2 [Homo
sapiens]
gi|119577287|gb|EAW56883.1| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae),
isoform CRA_c [Homo sapiens]
Length = 485
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 358
>gi|21758435|dbj|BAC05305.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 240 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 299
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 300 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARK 358
>gi|410910168|ref|XP_003968562.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Takifugu
rubripes]
Length = 529
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +TL KRK D ++Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPNEDTLRKRKRDFEEGMDYMPEDLYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRE 117
NYF I RD D VYYNELETRVRLSKRR K G + N LV HR +N E Q R+
Sbjct: 310 NYFFIFRDGDGVYYNELETRVRLSKRRAKAGTQSTTNAVLVCKHRDMNEKELEAQEARK 368
>gi|405965042|gb|EKC30470.1| RNA polymerase II-associated factor 1-like protein [Crassostrea
gigas]
Length = 479
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 84/120 (70%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DE+ EQFVAYFLPT ETL KRK D ++Y E EY+Y +AREYNWNVK+K +GYEE
Sbjct: 246 VDENNEQFVAYFLPTEETLTKRKRDSEEGVDYNAEDEYDYTLAREYNWNVKNKLSRGYEE 305
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
YF + R+D ++YNELETRVRLSKRR+ GA +RL+V HR +N E Q R L
Sbjct: 306 TYFFVFREDGMFYNELETRVRLSKRRKTGGAQMAKSRLIVKHREVNEREVAAQNARLMML 365
>gi|51258264|gb|AAH79993.1| Paf1 protein [Xenopus laevis]
Length = 407
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLR 116
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVVKHRDMHEKELEAQEAR 367
>gi|47227757|emb|CAG08920.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 80/115 (69%), Gaps = 2/115 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +TL KRK D ++Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 251 MDEEGNQFVAYFLPNEDTLRKRKRDFEEGVDYMPEDLYDYKIAREYNWNVKNKASKGYEE 310
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQ 113
NYF I RD D VYYNELETRVRLSKRR K G + N LV HR +N E Q
Sbjct: 311 NYFFIFRDGDGVYYNELETRVRLSKRRAKAGTQSTTNAVLVCKHRDMNEKELEAQ 365
>gi|260822425|ref|XP_002606602.1| hypothetical protein BRAFLDRAFT_209622 [Branchiostoma floridae]
gi|229291946|gb|EEN62612.1| hypothetical protein BRAFLDRAFT_209622 [Branchiostoma floridae]
Length = 352
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DE G+QFV YFLP ET+ KRK ++ S ++Y E+EY+Y MAREYNWNVK+KS +GYEE
Sbjct: 230 VDEEGDQFVGYFLPVEETVTKRKREEESEVDYMPEEEYDYMMAREYNWNVKNKSSRGYEE 289
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQK--VGAAPNNTRLVVTHR 103
NYF++ +DD VYYNELETRVRLSKRR K G +RLVV HR
Sbjct: 290 NYFVVFKDDGVYYNELETRVRLSKRRAKGGQGIQSRTSRLVVKHR 334
>gi|156389561|ref|XP_001635059.1| predicted protein [Nematostella vectensis]
gi|156222149|gb|EDO42996.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 81/110 (73%), Gaps = 4/110 (3%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+D SG+QFVAYFLP ETL+KRK D +Y DE+EY YKMAREYNWNVK+KS KGYEE
Sbjct: 228 VDASGDQFVAYFLPDKETLNKRKRDHEEMADYQDEEEYVYKMAREYNWNVKNKSTKGYEE 287
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGAA---PNNTRLVVTHRPLN 106
NYF + RD + V+YNEL TRVRLSKRR + G ++LVV HR LN
Sbjct: 288 NYFFVFRDGEGVFYNELVTRVRLSKRRARGGVGGVRSAVSKLVVKHRELN 337
>gi|390369554|ref|XP_785518.3| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Strongylocentrotus purpuratus]
Length = 555
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DES EQFV YFLPT ET KRK D +++Y + +EYEYK+ REYNWNVK+K+ +GYEE
Sbjct: 250 VDESEEQFVGYFLPTEETCRKRKRDFEEDIDYVEGEEYEYKLTREYNWNVKNKASRGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLR 116
NYF + R V+YNELETRVRLSKRR K A +N+ LVV HR L E +Q +R
Sbjct: 310 NYFFVFRKGKGVFYNELETRVRLSKRRVK-DAPSSNSLLVVKHRELFDQESAMQDMR 365
>gi|390342619|ref|XP_003725696.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Strongylocentrotus purpuratus]
Length = 515
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DES EQFV YFLPT ET KRK D +++Y + +EYEYK+ REYNWNVK+K+ +GYEE
Sbjct: 209 VDESEEQFVGYFLPTEETCRKRKRDFEEDIDYVEGEEYEYKLTREYNWNVKNKASRGYEE 268
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLR 116
NYF + R V+YNELETRVRLSKRR K A +N+ LVV HR L E +Q +R
Sbjct: 269 NYFFVFRKGKGVFYNELETRVRLSKRRVK-DAPSSNSLLVVKHRELFDQESAMQDMR 324
>gi|340373169|ref|XP_003385114.1| PREDICTED: RNA polymerase II-associated factor 1 homolog
[Amphimedon queenslandica]
Length = 420
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 89/123 (72%), Gaps = 2/123 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE+ EQFVAYFLP+ +T+ KR+ D + + ++EYEY ++R+YNWNVK+K+ KGYEE
Sbjct: 246 MDENNEQFVAYFLPSPDTITKREEDDRDGISFRPDEEYEYSLSRDYNWNVKNKASKGYEE 305
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERF 119
+YF +VR + VYYNE+ETRVRL+KRR K +A N++L+V HR + E Q +R
Sbjct: 306 SYFFVVRPGEGVYYNEIETRVRLNKRRMKTKSA-MNSKLLVRHREMTQEEKYAQTVRLTQ 364
Query: 120 LEP 122
LEP
Sbjct: 365 LEP 367
>gi|226479828|emb|CAX73210.1| Putative DNA helicase INO80 [Schistosoma japonicum]
Length = 497
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DESG+ FVAYFLPT +T R+LD + L YT+ YEY++ REYNWNVK+K+ YEE
Sbjct: 249 VDESGDHFVAYFLPTEQTKQLRRLDAENRLPYTEGAAYEYELTREYNWNVKNKTMANYEE 308
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQ------KVGA--APNNTRLVVTHRPLNATEFRI 112
NYF R D VYYNELETRVRLSKRR+ VG AP TRL+V HR E +
Sbjct: 309 NYFFCFRKDGVYYNELETRVRLSKRRKLNQSGTNVGVLQAP-KTRLIVHHRDFTDEELKA 367
Query: 113 QRLRERFL 120
Q R L
Sbjct: 368 QTDRLYML 375
>gi|355709097|gb|AES03478.1| Paf1, RNA polymerase II associated factor,-like protein [Mustela
putorius furo]
Length = 337
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRR 86
NYF I R+ D VYYNELETRVRLSKRR
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRR 336
>gi|256079279|ref|XP_002575916.1| procollagen-lysine2-oxoglutarate 5-dioxygenase [Schistosoma
mansoni]
gi|360044866|emb|CCD82414.1| putative procollagen-lysine,2-oxoglutarate 5-dioxygenase
[Schistosoma mansoni]
Length = 921
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 81/121 (66%), Gaps = 9/121 (7%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DESG+ FVAYFLPT +T R+LD + YT++ YEY++ REYNWNVK+K+ YEE
Sbjct: 221 VDESGDHFVAYFLPTEQTKQLRRLDAENQTPYTEDAAYEYELTREYNWNVKNKTMANYEE 280
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQ------KVGA--APNNTRLVVTHRPLNATEFRI 112
NYF R D VYYNELETRVRLSKRR+ VGA AP TRL+V HR E +
Sbjct: 281 NYFFCFRKDGVYYNELETRVRLSKRRKLNQSGTNVGALQAP-KTRLIVHHRDFTDEELKA 339
Query: 113 Q 113
Q
Sbjct: 340 Q 340
>gi|358333056|dbj|GAA51648.1| RNA polymerase II-associated factor 1 homolog [Clonorchis sinensis]
Length = 850
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 84/136 (61%), Gaps = 16/136 (11%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DESG+ FVAYFLPT T R+LD +++ YT+ YEY++AREYNWNVK+K+ YEE
Sbjct: 558 VDESGDHFVAYFLPTESTKQLRRLDIENHVPYTEGAAYEYELAREYNWNVKNKTMANYEE 617
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGA---------------APNNTRLVVTHRPL 105
NYF + R D V+YNELETRVRLSKRR+ + AP TRL+V HR
Sbjct: 618 NYFFVFRKDGVFYNELETRVRLSKRRKLTQSGSFMTGGGGGGGALPAP-KTRLIVHHRDF 676
Query: 106 NATEFRIQRLRERFLE 121
E + Q R LE
Sbjct: 677 TDEELKAQTDRLYMLE 692
>gi|313238722|emb|CBY13745.1| unnamed protein product [Oikopleura dioica]
Length = 953
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 86/127 (67%), Gaps = 8/127 (6%)
Query: 2 DESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 61
DE +QFVAYFLPT ET++KR D+ L++ D+ Y+YK+ +EYNWNVK+K+ KGYEEN
Sbjct: 495 DEQNQQFVAYFLPTQETIEKRAKDKSLGLDFDDDAVYDYKLTKEYNWNVKNKASKGYEEN 554
Query: 62 YFLIVR-DDAVYYNELETRVRLSKR-RQK----VGAAPN--NTRLVVTHRPLNATEFRIQ 113
+F R +D VYYNELETRVRLSKR RQK V N NT L V HR E + Q
Sbjct: 555 FFFCYRPNDGVYYNELETRVRLSKRVRQKDANGVDGLANYFNTVLQVKHRENTEDEDKAQ 614
Query: 114 RLRERFL 120
++RE L
Sbjct: 615 KMRENAL 621
>gi|393905193|gb|EFO23108.2| Paf1 family protein [Loa loa]
Length = 569
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 4/151 (2%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYE- 59
MDE GEQFV YFLP+ ETLDKR D LE+ + YEY+ R+YNW V++KS KGYE
Sbjct: 256 MDEEGEQFVTYFLPSKETLDKRLKDAEDGLEFDSDYVYEYQSVRDYNWLVRNKSTKGYEQ 315
Query: 60 ENYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLR-ER 118
+N+ +RD AVYYNELET+V L++R+ K T+L+V +R + E Q+ R
Sbjct: 316 DNFLFTIRDGAVYYNELETKVSLNRRKTK--RIRQETKLMVRNRAYDENELNAQQERLNN 373
Query: 119 FLEPPNEEEEEEDEEEEEEEAEETQQGETTE 149
L P +E+++E E+ E +E + + E E
Sbjct: 374 LLHPYDEKDDEGSEQGSSEGSERSHEDEIVE 404
>gi|339239561|ref|XP_003381335.1| 1-pyrroline-5-carboxylate dehydrogenase [Trichinella spiralis]
gi|316975641|gb|EFV59049.1| 1-pyrroline-5-carboxylate dehydrogenase [Trichinella spiralis]
Length = 1198
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTD-EQEYEYKMAREYNWNVKSKSCKGYE 59
MDE GEQFVAYF+PT ET+ K K + ++ D +++K+ REYNW+VK+K+ GYE
Sbjct: 258 MDEKGEQFVAYFVPTLETIRKLKSVEGKDISEMDLSTPFDFKLLREYNWSVKNKASVGYE 317
Query: 60 ENYFLIVRDDAVYYNELETRVRLSKRRQKVG---AAPNNTRLVVTHRPLNATEFRIQRLR 116
EN+F RD YYNELETRVRL++RR K G +A N+RL+V +R N E R
Sbjct: 318 ENHFFSFRDGRAYYNELETRVRLNRRRVKDGHVHSAVPNSRLIVRYRDFNDQELAALSAR 377
Query: 117 ERFLEP 122
+ P
Sbjct: 378 SMIVNP 383
>gi|426388670|ref|XP_004060756.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform 3
[Gorilla gorilla gorilla]
Length = 288
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 197 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 256
Query: 61 NYFLIVRD-DAVYYNELETRVRLSK 84
NYF I R+ D VYYNELET ++ S+
Sbjct: 257 NYFFIFREGDGVYYNELETSIQYSQ 281
>gi|194378112|dbj|BAG57806.1| unnamed protein product [Homo sapiens]
Length = 288
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 197 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 256
Query: 61 NYFLIVRD-DAVYYNELETRVRLS 83
NYF I R+ D VYYNELET ++ S
Sbjct: 257 NYFFIFREGDGVYYNELETSIQYS 280
>gi|109124676|ref|XP_001086329.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Macaca
mulatta]
Length = 333
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETR 79
NYF I R+ D VYYNELETR
Sbjct: 310 NYFFIFREGDGVYYNELETR 329
>gi|417399206|gb|JAA46631.1| Putative rna polymerase ii regulator [Desmodus rotundus]
Length = 338
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETR 79
NYF I R+ D VYYNELETR
Sbjct: 310 NYFFIFREGDGVYYNELETR 329
>gi|221109423|ref|XP_002154497.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Hydra
magnipapillata]
Length = 427
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 85/119 (71%), Gaps = 4/119 (3%)
Query: 2 DESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 61
DESG+QFVAYFLP+ TL K+K + +N + ++EYEYK+AREYNWNVK+K+ KG+EEN
Sbjct: 245 DESGDQFVAYFLPSDLTLKKKKQELDNNEQPNPDEEYEYKLAREYNWNVKNKAIKGFEEN 304
Query: 62 YFLIVR-DDAVYYNELETRVRLSK---RRQKVGAAPNNTRLVVTHRPLNATEFRIQRLR 116
YF + R ++ V+YNEL+TRVRL+K R G + + ++L+V +R E R+Q R
Sbjct: 305 YFFVFRENEGVFYNELQTRVRLNKRRGRGGAGGISSSVSKLIVKNREPTENEVRLQNAR 363
>gi|114677172|ref|XP_001135849.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pan
troglodytes]
Length = 203
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 112 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 171
Query: 61 NYFLIVRD-DAVYYNELETR 79
NYF I R+ D VYYNELETR
Sbjct: 172 NYFFIFREGDGVYYNELETR 191
>gi|324512878|gb|ADY45317.1| RNA polymerase II-associated factor 1 [Ascaris suum]
Length = 470
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE GEQFV YFLPT ETLDKR D + ++ + YEY R+YNW V++KS KGYE+
Sbjct: 262 MDEEGEQFVTYFLPTKETLDKRMTDTENGKQFDPDYTYEYYSVRDYNWFVRNKSTKGYEQ 321
Query: 61 NYFLI-VRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERF 119
+ FL RD VYYNELETRV L++R+ K + T+L+V +R + E Q RE
Sbjct: 322 DNFLFSFRDSGVYYNELETRVSLTRRKAK--RSRQQTKLMVRNRDYDENELATQEDREHH 379
Query: 120 LEPP 123
L P
Sbjct: 380 LLRP 383
>gi|312076665|ref|XP_003140963.1| Paf1 family protein [Loa loa]
Length = 385
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE GEQFV YFLP+ ETLDKR D LE+ + YEY+ R+YNW V++KS KGYE+
Sbjct: 256 MDEEGEQFVTYFLPSKETLDKRLKDAEDGLEFDSDYVYEYQSVRDYNWLVRNKSTKGYEQ 315
Query: 61 -NYFLIVRDDAVYYNELETRVRLSKRRQK 88
N+ +RD AVYYNELET+V L++R+ K
Sbjct: 316 DNFLFTIRDGAVYYNELETKVSLNRRKTK 344
>gi|198415605|ref|XP_002124310.1| PREDICTED: similar to RNA polymerase II-associated factor 1 homolog
(hPAF1) (Pancreatic differentiation protein 2) [Ciona
intestinalis]
Length = 328
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 62/79 (78%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
+DE G+QFVAYFLPT T KRK D +++ E+ Y+Y++AREYNWNVK+K+ KGYEE
Sbjct: 250 VDEEGDQFVAYFLPTPSTRQKRKRDVEEGVDFEPEETYDYRLAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETR 79
NY+ I R++ VYYNELETR
Sbjct: 310 NYYFIFREEGVYYNELETR 328
>gi|170572245|ref|XP_001892038.1| Paf1 family protein [Brugia malayi]
gi|158603082|gb|EDP39151.1| Paf1 family protein [Brugia malayi]
Length = 353
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYE- 59
MDE GEQFV YFLP+ ETLDKR D LE+ + YEY+ R+YNW V++KS KGYE
Sbjct: 262 MDEEGEQFVTYFLPSRETLDKRLKDADEGLEFDSDYVYEYQSVRDYNWLVRNKSTKGYEQ 321
Query: 60 ENYFLIVRDDAVYYNELETRVRLSKRRQK 88
+N+ +RD AVYYNELET+V L++R+ K
Sbjct: 322 DNFLFTIRDGAVYYNELETKVSLTRRKTK 350
>gi|402578989|gb|EJW72942.1| hypothetical protein WUBG_16151, partial [Wuchereria bancrofti]
Length = 53
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 40 YKMAREYNWNVKSKSCKGYEE-NYFLIVRDDAVYYNELETRVRLSKRRQK 88
Y+ R+YNW V++KS KGYE+ N+ +RD AVYYNELET+V L++R+ K
Sbjct: 1 YQSVRDYNWLVRNKSTKGYEQDNFLFTIRDGAVYYNELETKVSLTRRKTK 50
>gi|268557112|ref|XP_002636545.1| Hypothetical protein CBG23232 [Caenorhabditis briggsae]
Length = 453
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
M+ ++F A F+PT E L D + + +Q+YE+ ++REY+W ++ + +
Sbjct: 265 MEYEDKKFAALFVPTIEGLTHMMEDLEMDRPFDPDQKYEFLLSREYDWKMEHVPPRD-RD 323
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
+ R + YNE+++ V++++RR+ + N++L + +RP N TE R RE L
Sbjct: 324 VFVFYQRGPTMQYNEIDSNVKMTRRRKMCLS--RNSKLTIQYRPFNETETEAMRRREIEL 381
Query: 121 --EPPNEEEEE-EDEEEEEEEAEETQQGETTEAERQEGEGGER 160
+P N +E E EEE+E+ + + + +E + E R
Sbjct: 382 YEQPKNRRQERLERMEEEKEDGDSSARSSDSEDAKPRREKPPR 424
>gi|196016881|ref|XP_002118290.1| hypothetical protein TRIADDRAFT_33941 [Trichoplax adhaerens]
gi|190579121|gb|EDV19224.1| hypothetical protein TRIADDRAFT_33941 [Trichoplax adhaerens]
Length = 347
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 3 ESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENY 62
++G QFV Y+ P A KRK+ + + E T +Y +AREYNW VKS+ G + +
Sbjct: 226 DTGNQFVGYYTPIATDAKKRKVSENQDSE-TSRNCRDYNLAREYNWVVKSRD-SGRDVSN 283
Query: 63 FLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLN 106
++ ++N+L RV+LSK+R V N RL V +R N
Sbjct: 284 VIMFEYSFCHFNKLFERVKLSKQRANVKGDNVNNRLTVEYRDFN 327
>gi|341892745|gb|EGT48680.1| hypothetical protein CAEBREN_08454 [Caenorhabditis brenneri]
Length = 424
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
M+ +QF A F+PT E L D Y +++YE+ ++REY+W ++ + +
Sbjct: 241 MNVDDKQFAAVFVPTIECLTNYMDDLELERPYDPDRKYEFLLSREYDWKMEQVPPRD-RD 299
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLN 106
+ RD Y+E+++ V++++RR+ + ++++VT+R N
Sbjct: 300 AFVFYYRDGIFQYDEIDSNVKMTRRRKMYMS--RKSKMMVTYREFN 343
>gi|341880894|gb|EGT36829.1| hypothetical protein CAEBREN_31200, partial [Caenorhabditis
brenneri]
Length = 287
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
M+ +QF A F+PT E L D Y +++YE+ ++REY+W ++ + +
Sbjct: 150 MNVDDKQFAAVFVPTIECLTNYMDDLELERPYDPDRKYEFLLSREYDWKMEQVPPRD-RD 208
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLN 106
+ RD Y+E+++ V++++RR+ + ++++VT+R N
Sbjct: 209 AFVFYYRDGIFQYDEIDSNVKMTRRRKMYMS--RKSKMMVTYREFN 252
>gi|308479030|ref|XP_003101725.1| hypothetical protein CRE_11174 [Caenorhabditis remanei]
gi|308262936|gb|EFP06889.1| hypothetical protein CRE_11174 [Caenorhabditis remanei]
Length = 426
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 65
++F A F+PT E L D + + +Q+YE+ ++REY++ K + + + F+
Sbjct: 248 QKFAALFVPTIECLTHMMEDLEMDRSFDPDQKYEFLLSREYDF--KYEPVAPRDRDVFVF 305
Query: 66 VRDDAVY-YNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLN 106
+ +Y YNE+E+ V++++RR+ A ++L + +RP
Sbjct: 306 YHRNGIYQYNEIESNVKMTRRRKM--ALSRASKLTIQYRPFT 345
>gi|449480786|ref|XP_004155995.1| PREDICTED: uncharacterized LOC101203806 [Cucumis sativus]
Length = 706
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 65
E+F+AY +P+ D+LS Y ++++ Y REY+W+V+ + + +L+
Sbjct: 560 EKFLAYMVPSP--------DELSKDIYDEQEDVSYSWVREYHWDVRGDNVD--DPTTYLV 609
Query: 66 VRDDA-VYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRPLNAT 108
DDA Y L T++ L K+R K G + P R+ V RP AT
Sbjct: 610 SFDDAEARYVPLPTKLVLRKKRAKEGRSSDEVEHFPAPARVTVRRRPTVAT 660
>gi|449448058|ref|XP_004141783.1| PREDICTED: uncharacterized protein LOC101203806 [Cucumis sativus]
Length = 706
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 65
E+F+AY +P+ D+LS Y ++++ Y REY+W+V+ + + +L+
Sbjct: 560 EKFLAYMVPSP--------DELSKDIYDEQEDVSYSWVREYHWDVRGDNVD--DPTTYLV 609
Query: 66 VRDDA-VYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRPLNAT 108
DDA Y L T++ L K+R K G + P R+ V RP AT
Sbjct: 610 SFDDAEARYVPLPTKLVLRKKRAKEGRSSDEVEHFPAPARVTVRRRPTVAT 660
>gi|255549826|ref|XP_002515964.1| conserved hypothetical protein [Ricinus communis]
gi|223544869|gb|EEF46384.1| conserved hypothetical protein [Ricinus communis]
Length = 672
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 65
E+F+AY P+ ++LS Y + ++ Y REY+W+V+ G + FL+
Sbjct: 518 EKFLAYMAPSP--------NELSKDMYDENEDISYNWVREYHWDVQGDG--GNDPTTFLV 567
Query: 66 VRD-DAVYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRPLNAT 108
D DA Y L T++ L K+R + G + P + + V RP A
Sbjct: 568 SFDEDAARYVPLPTKINLRKKRAREGRSGDEVEHFPAPSSVTVRRRPTAAA 618
>gi|328870376|gb|EGG18750.1| RNA polymerase II-associated factor 1 [Dictyostelium fasciculatum]
Length = 476
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 39 EYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQK 88
+YKM R + ++ + ENYF+IV+DDAVYYN L TRV L + + +
Sbjct: 382 DYKMYRVFTNDI---FVQENNENYFMIVKDDAVYYNRLNTRVNLKRVKSR 428
>gi|281204907|gb|EFA79101.1| RNA polymerase II-associated factor 1 [Polysphondylium pallidum
PN500]
Length = 469
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 37 EYEYKMAREYNWNVKSKSCKGYEENYFLIVRDDAVYYNELETRVRLSKRRQK 88
++ YKM + + ++ + EENYF++++DD VYYN L T+V L + + +
Sbjct: 371 QHPYKMYKVFTSDI----FQAQEENYFMVIKDDGVYYNRLPTKVNLKRVKSR 418
>gi|297839959|ref|XP_002887861.1| hypothetical protein ARALYDRAFT_477298 [Arabidopsis lyrata subsp.
lyrata]
gi|297333702|gb|EFH64120.1| hypothetical protein ARALYDRAFT_477298 [Arabidopsis lyrata subsp.
lyrata]
Length = 576
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 65
E+F+AY +P+ LD+LS + ++++ Y REY+W+V+ Y +
Sbjct: 422 EKFLAYMVPS--------LDELSKDMHDEDEDISYTWVREYHWDVRGDDANDI-GTYLVS 472
Query: 66 VRDDAVYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHR 103
D A Y L T++ L K+R + G + P +R+ V R
Sbjct: 473 FDDGAASYLPLPTKLNLRKKRPREGRSSDEIEHFPVPSRVTVRRR 517
>gi|402590790|gb|EJW84720.1| hypothetical protein WUBG_04371, partial [Wuchereria bancrofti]
Length = 291
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEY 32
MDE GEQFV YFLP+ ETLDKR D LE+
Sbjct: 256 MDEEGEQFVTYFLPSRETLDKRLKDAEEGLEF 287
>gi|357513509|ref|XP_003627043.1| hypothetical protein MTR_8g014480 [Medicago truncatula]
gi|355521065|gb|AET01519.1| hypothetical protein MTR_8g014480 [Medicago truncatula]
Length = 215
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEENYFLI 65
E+F+AY +P + +LS Y ++++ Y REY+W+V+ + FL+
Sbjct: 65 EKFLAYMVP--------QPGELSKDIYDEDEDVSYSWVREYHWDVRGDDAD--DPTTFLV 114
Query: 66 VRDDA-VYYNELETRVRLSKRRQKVGAA-------PNNTRLVVTHRP 104
D++ Y L T++ L K+R K G + P +R+ V RP
Sbjct: 115 SFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQFPAPSRVTVRRRP 161
>gi|302772835|ref|XP_002969835.1| hypothetical protein SELMODRAFT_441016 [Selaginella moellendorffii]
gi|300162346|gb|EFJ28959.1| hypothetical protein SELMODRAFT_441016 [Selaginella moellendorffii]
Length = 599
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 2 DESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 61
D E+F+ Y +P KLD+ + D+ E Y REY W+V+ + + N
Sbjct: 435 DGKTEKFLGYMVP--------KLDE----AHDDDDEIPYTWIREYQWDVRGEDARN---N 479
Query: 62 YFLIVRDDAVYYNELETRVRLSKRRQKVG 90
Y DAV Y + +++ L K++ + G
Sbjct: 480 YVFCFGKDAVQYLPISSKLILHKKKAREG 508
>gi|302806882|ref|XP_002985172.1| hypothetical protein SELMODRAFT_446192 [Selaginella moellendorffii]
gi|300147000|gb|EFJ13666.1| hypothetical protein SELMODRAFT_446192 [Selaginella moellendorffii]
Length = 601
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 2 DESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 61
D E+F+ Y +P KLD+ + D+ E Y REY W+V+ + + N
Sbjct: 437 DGKTEKFLGYMVP--------KLDE----AHDDDDEIPYTWIREYQWDVRGEDARN---N 481
Query: 62 YFLIVRDDAVYYNELETRVRLSKRRQKVG 90
Y DAV Y + +++ L K++ + G
Sbjct: 482 YVFCFGKDAVQYLPISSKLILHKKKAREG 510
>gi|452820231|gb|EME27276.1| hypothetical protein Gasu_51340 [Galdieria sulphuraria]
Length = 406
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 2 DESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEEN 61
++SGE+F++Y++PT T++ RK + +Y++ REY + + +
Sbjct: 265 NQSGERFLSYYIPTENTIENRKSQHWEETMKKNNTIEDYELLREYTFVTRPEEGN----R 320
Query: 62 YFLIVRDD-AVYYNELETRVRLSKR-RQKVGAAPNNTRLVVTHRPL 105
F+ ++DD V Y + +++ L +R R++ + P L V RP
Sbjct: 321 SFVFLQDDQVVRYFPVTSKLFLYRRIRRQETSQPGQPILWVHRRPF 366
>gi|17559000|ref|NP_505925.1| Protein C55A6.9 [Caenorhabditis elegans]
gi|74961204|sp|P90783.2|PAF1_CAEEL RecName: Full=RNA polymerase II-associated factor 1 homolog
gi|3875280|emb|CAB02869.1| Protein C55A6.9 [Caenorhabditis elegans]
Length = 425
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
M+ ++F A F+PT L D + ++ +YE+ ++REY + ++ + +
Sbjct: 242 MEFEDQKFAAVFVPTIGCLTSFMDDLELERPFDEDMKYEFLLSREYTFKMEHLPPRD-RD 300
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHR 103
+ + R++ YNE++ V+++ R+ A ++L +T+R
Sbjct: 301 VFIMYHRNNVFQYNEVDCNVKMT--RKPKMALSRKSKLTLTYR 341
>gi|167525823|ref|XP_001747246.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774541|gb|EDQ88170.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 20/94 (21%)
Query: 6 EQFVAYFLPTAETLDKRKLDQLSNLEYTDEQE---------YEYKMAREYNWNVKSKSCK 56
+ F AYFLPT +T ++ Y + E +EY RE+ ++V+++ +
Sbjct: 105 QNFAAYFLPTVDTTNRL-------CTYAQDAERKGVAEGEVFEYDKIREFQFDVETRDDR 157
Query: 57 ----GYEENYFLIVRDDAVYYNELETRVRLSKRR 86
G E+ + D+ + Y LE ++LS+RR
Sbjct: 158 YIGTGLEDYFLFYEHDNLINYTRLERTLKLSQRR 191
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.305 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,936,911,213
Number of Sequences: 23463169
Number of extensions: 129576961
Number of successful extensions: 3342439
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16566
Number of HSP's successfully gapped in prelim test: 6179
Number of HSP's that attempted gapping in prelim test: 2566670
Number of HSP's gapped (non-prelim): 432049
length of query: 175
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 43
effective length of database: 9,262,057,059
effective search space: 398268453537
effective search space used: 398268453537
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 71 (32.0 bits)