BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6666
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N7H5|PAF1_HUMAN RNA polymerase II-associated factor 1 homolog OS=Homo sapiens
GN=PAF1 PE=1 SV=2
Length = 531
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>sp|Q5RAX0|PAF1_PONAB RNA polymerase II-associated factor 1 homolog OS=Pongo abelii
GN=PAF1 PE=2 SV=1
Length = 533
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 118/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>sp|Q2KJ14|PAF1_BOVIN RNA polymerase II-associated factor 1 homolog OS=Bos taurus GN=PAF1
PE=2 SV=1
Length = 532
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEP-------------------PNEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E+ER+EG E
Sbjct: 370 QLENHEPEEEEEEEMETEEKEAGASDEEREKGSSSEKEGSEDERSG--SESEREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>sp|Q8K2T8|PAF1_MOUSE RNA polymerase II-associated factor 1 homolog OS=Mus musculus
GN=Paf1 PE=2 SV=1
Length = 535
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE+E+ E+E +E+ G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>sp|Q4V886|PAF1_RAT RNA polymerase II-associated factor 1 homolog OS=Rattus norvegicus
GN=Paf1 PE=2 SV=1
Length = 535
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 26/194 (13%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLEPP-------------------NEEEEEEDEEEEEEEAEETQQGETTEAERQEG---E 156
LE ++EE E+ E+E +E+ + G +E++R+EG E
Sbjct: 370 QLENHEPEEEEEEEMEAEEKEAGGSDEEHEKGSSSEKEGSEDERSG--SESDREEGDRDE 427
Query: 157 GGEREGGGEGEISE 170
++ G GE E SE
Sbjct: 428 ASDKSGSGEDESSE 441
>sp|A2BD83|PAF1_XENLA RNA polymerase II-associated factor 1 homolog OS=Xenopus laevis
GN=paf1 PE=2 SV=1
Length = 524
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 106/164 (64%), Gaps = 2/164 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVVKHRDMHEKELEAQEARRA 369
Query: 119 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREG 162
LE EEEEE E + + + + ++GE +EG G E+ G
Sbjct: 370 QLENHEPEEEEEIEVDRDTQGSDAEEGEKGSGSEKEGSGAEQSG 413
>sp|Q4U0S5|PAF1_DANRE RNA polymerase II-associated factor 1 homolog OS=Danio rerio
GN=paf1 PE=1 SV=1
Length = 503
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK D L+Y E+ YEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I RD D VYYNELETRVRLSKRR KVGA + N LV HR +N E Q R+
Sbjct: 310 NYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSSTNAVLVCKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>sp|Q6P2Y1|PAF1_XENTR RNA polymerase II-associated factor 1 homolog OS=Xenopus tropicalis
GN=paf1 PE=2 SV=1
Length = 520
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 107/166 (64%), Gaps = 9/166 (5%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVVKHRDMHEKELEAQEARRA 369
Query: 119 FLEPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGG 164
LE EEEEE E ++E + + + GE +G G E+EG G
Sbjct: 370 QLENHEPEEEEEIEVDQETQGSDAEDGE-------KGSGSEKEGSG 408
>sp|P90783|PAF1_CAEEL RNA polymerase II-associated factor 1 homolog OS=Caenorhabditis
elegans GN=C55A6.9 PE=3 SV=2
Length = 425
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
M+ ++F A F+PT L D + ++ +YE+ ++REY + ++ + +
Sbjct: 242 MEFEDQKFAAVFVPTIGCLTSFMDDLELERPFDEDMKYEFLLSREYTFKMEHLPPRD-RD 300
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHR 103
+ + R++ YNE++ V+++ R+ A ++L +T+R
Sbjct: 301 VFIMYHRNNVFQYNEVDCNVKMT--RKPKMALSRKSKLTLTYR 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,201,068
Number of Sequences: 539616
Number of extensions: 3228401
Number of successful extensions: 95290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1935
Number of HSP's successfully gapped in prelim test: 612
Number of HSP's that attempted gapping in prelim test: 45530
Number of HSP's gapped (non-prelim): 25959
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)