Query psy6666
Match_columns 175
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 29240
Date Sat Aug 17 00:01:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dm5_A Osmotically inducible l 38.5 15 0.00052 27.8 2.0 22 46-70 54-75 (103)
2 2ca6_A RAN GTPase-activating p 24.2 21 0.00073 28.9 0.7 13 96-108 306-318 (386)
3 4a25_A DPS, ferritin DPS famil 20.2 6.6 0.00022 30.4 -3.0 15 39-53 39-53 (169)
4 1zuj_A Hypothetical protein ll 14.8 10 0.00034 30.1 -3.2 16 38-53 39-54 (179)
5 1zs3_A Lactococcus lactis Mg13 14.1 11 0.00037 30.0 -3.2 16 38-53 40-55 (182)
6 3lqv_P Splicing factor 3B subu 11.0 66 0.0023 20.5 0.4 13 101-113 19-31 (39)
7 3iq1_A DPS family protein; csg 11.0 15 0.0005 27.7 -3.2 15 39-53 33-47 (159)
8 3kwo_A Putative bacterioferrit 9.1 20 0.00067 26.8 -3.1 15 39-53 20-34 (152)
9 4ghg_A Homoprotocatechuate 2,3 9.0 4.2E+02 0.014 22.1 4.8 15 9-23 215-229 (365)
10 2c7h_A RBBP6, retinoblastoma-b 8.9 90 0.0031 22.5 0.5 15 92-106 69-83 (86)
No 1
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=38.54 E-value=15 Score=27.76 Aligned_cols=22 Identities=5% Similarity=0.309 Sum_probs=15.2
Q ss_pred eeeeccccCCCCccceEEEEEeCCe
Q psy6666 46 YNWNVKSKSCKGYEENYFLIVRDDA 70 (175)
Q Consensus 46 YnW~Vk~kaskgyeenyfF~fRddg 70 (175)
|||-+ +.+++ ..+||++|++.|
T Consensus 54 ~nY~L-~~dg~--~q~Y~VsFd~~G 75 (103)
T 4dm5_A 54 NSYIL-NKDGQ--QQPFYVSFDGSG 75 (103)
T ss_dssp EEEEE-EETTE--EEEEEEEECTTS
T ss_pred eeEEe-ccCCc--eeeEEEEECCCC
Confidence 56666 34433 789999999855
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=24.21 E-value=21 Score=28.87 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=6.8
Q ss_pred ceEEEEecCCChH
Q psy6666 96 TRLVVTHRPLNAT 108 (175)
Q Consensus 96 s~LtVr~R~~ne~ 108 (175)
..|.+.+=.++..
T Consensus 306 ~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 306 LFLELNGNRFSEE 318 (386)
T ss_dssp CEEECTTSBSCTT
T ss_pred eEEEccCCcCCcc
Confidence 4555555555533
No 3
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=20.20 E-value=6.6 Score=30.38 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=12.5
Q ss_pred cceEEEeeeeecccc
Q psy6666 39 EYKMAREYNWNVKSK 53 (175)
Q Consensus 39 eYk~~REYnW~Vk~k 53 (175)
=|..+|.|||||++.
T Consensus 39 Ly~k~k~~HWnV~G~ 53 (169)
T 4a25_A 39 LHLQGKQAHWNIVGE 53 (169)
T ss_dssp HHHHHHHHHHHEESS
T ss_pred HHHHHhhhceeeECC
Confidence 578889999999763
No 4
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=14.78 E-value=10 Score=30.07 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=12.7
Q ss_pred ccceEEEeeeeecccc
Q psy6666 38 YEYKMAREYNWNVKSK 53 (175)
Q Consensus 38 yeYk~~REYnW~Vk~k 53 (175)
.-|...+.|||||++.
T Consensus 39 ~Ly~k~~~~HWnV~G~ 54 (179)
T 1zuj_A 39 YEKISLMQAGLYAKSA 54 (179)
T ss_dssp HHHHHHHHHHHHCSSH
T ss_pred HHHHHHhccceeeECh
Confidence 3678889999999753
No 5
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=14.09 E-value=11 Score=29.96 Aligned_cols=16 Identities=19% Similarity=-0.041 Sum_probs=12.7
Q ss_pred ccceEEEeeeeecccc
Q psy6666 38 YEYKMAREYNWNVKSK 53 (175)
Q Consensus 38 yeYk~~REYnW~Vk~k 53 (175)
.-|...+.|||||++.
T Consensus 40 ~Ly~k~k~~HWnV~G~ 55 (182)
T 1zs3_A 40 IENIRLTQAGIYAKSP 55 (182)
T ss_dssp HHHHHHHHHHHHCSSH
T ss_pred HHHHHHhccceeeECh
Confidence 3678889999999753
No 6
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=10.99 E-value=66 Score=20.45 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.4
Q ss_pred EecCCChHHHHHH
Q psy6666 101 THRPLNATEFRIQ 113 (175)
Q Consensus 101 r~R~~ne~E~~~q 113 (175)
|.|++++.|+.++
T Consensus 19 RNrpltDEeLD~m 31 (39)
T 3lqv_P 19 RNRPLSDEELDAM 31 (39)
T ss_dssp TTCCCCHHHHHHT
T ss_pred hcCCCCHHHHHHh
Confidence 5789999998763
No 7
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=10.98 E-value=15 Score=27.69 Aligned_cols=15 Identities=40% Similarity=0.888 Sum_probs=11.3
Q ss_pred cceEEEeeeeecccc
Q psy6666 39 EYKMAREYNWNVKSK 53 (175)
Q Consensus 39 eYk~~REYnW~Vk~k 53 (175)
-|.-.|.|||+|++.
T Consensus 33 l~~k~~~~HWnv~G~ 47 (159)
T 3iq1_A 33 FYMNTRGYHWNIQGK 47 (159)
T ss_dssp HHHHHHHHHHHCCST
T ss_pred HHHHHHhhheeeECC
Confidence 456668899999753
No 8
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=9.07 E-value=20 Score=26.78 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=11.2
Q ss_pred cceEEEeeeeecccc
Q psy6666 39 EYKMAREYNWNVKSK 53 (175)
Q Consensus 39 eYk~~REYnW~Vk~k 53 (175)
-|...+.|||+|++.
T Consensus 20 l~~k~~~~HWnv~G~ 34 (152)
T 3kwo_A 20 LWVKFHNYHWNVKGL 34 (152)
T ss_dssp HHHHHHHHHHHBCST
T ss_pred HHHHHhhhheeeECC
Confidence 466677899999753
No 9
>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*
Probab=8.99 E-value=4.2e+02 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=10.9
Q ss_pred EEEecCChhhhhhhh
Q psy6666 9 VAYFLPTAETLDKRK 23 (175)
Q Consensus 9 VAYflPt~etl~Kr~ 23 (175)
|||-+|+.+.+..-.
T Consensus 215 vaf~v~d~d~v~~~~ 229 (365)
T 4ghg_A 215 VAFSTHEKHNIIQIC 229 (365)
T ss_dssp EEEECSSHHHHHHHH
T ss_pred EEEecCCHHHHHHHH
Confidence 788888888775533
No 10
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=8.87 E-value=90 Score=22.52 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=0.0
Q ss_pred CCCCceEEEEecCCC
Q psy6666 92 APNNTRLVVTHRPLN 106 (175)
Q Consensus 92 ~~~~s~LtVr~R~~n 106 (175)
+|+||.|+|++.|..
T Consensus 69 IprnssViVrRvP~~ 83 (86)
T 2c7h_A 69 IPKNSSVIVRRIPIG 83 (86)
T ss_dssp EETTCCEEEEEEECS
T ss_pred EecCCEEEEEeccCc
Done!