Your job contains 1 sequence.
>psy6666
MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE
NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL
EPPNEEEEEEDEEEEEEEAEETQQGETTEAERQEGEGGEREGGGEGEISECSNED
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6666
(175 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010750 - symbol:atms "antimeros" species:7227 "Dr... 462 8.1e-44 1
ZFIN|ZDB-GENE-050506-101 - symbol:paf1 "paf1, RNA polymer... 378 6.5e-35 1
UNIPROTKB|Q2KJ14 - symbol:PAF1 "RNA polymerase II-associa... 375 1.3e-34 1
UNIPROTKB|F8W9Q2 - symbol:PAF1 "RNA polymerase II-associa... 375 1.3e-34 1
UNIPROTKB|Q8N7H5 - symbol:PAF1 "RNA polymerase II-associa... 375 1.3e-34 1
UNIPROTKB|F1SEH0 - symbol:PAF1 "Uncharacterized protein" ... 375 1.3e-34 1
UNIPROTKB|Q5RAX0 - symbol:PAF1 "RNA polymerase II-associa... 375 1.3e-34 1
MGI|MGI:1923988 - symbol:Paf1 "Paf1, RNA polymerase II as... 375 1.3e-34 1
RGD|1306219 - symbol:Paf1 "Paf1, RNA polymerase II associ... 375 1.3e-34 1
UNIPROTKB|Q6P2Y1 - symbol:paf1 "RNA polymerase II-associa... 365 1.5e-33 1
UNIPROTKB|A2BD83 - symbol:paf1 "RNA polymerase II-associa... 363 2.5e-33 1
UNIPROTKB|G1K1Z2 - symbol:PAF1 "RNA polymerase II-associa... 351 4.7e-32 1
UNIPROTKB|B4DGJ5 - symbol:PAF1 "RNA polymerase II-associa... 292 8.4e-26 1
WB|WBGene00008338 - symbol:C55A6.9 species:6239 "Caenorha... 106 3.6e-05 1
UNIPROTKB|P90783 - symbol:C55A6.9 "RNA polymerase II-asso... 106 3.6e-05 1
>FB|FBgn0010750 [details] [associations]
symbol:atms "antimeros" species:7227 "Drosophila
melanogaster" [GO:0019894 "kinesin binding" evidence=IDA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE014297
GO:GO:0045893 GO:GO:0022008 GO:GO:0035327 GO:GO:0016593
eggNOG:NOG297168 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 GeneTree:ENSGT00390000001474 EMBL:AY070561
RefSeq:NP_649493.1 UniGene:Dm.1063 IntAct:Q9VN55 STRING:Q9VN55
EnsemblMetazoa:FBtr0078868 GeneID:40593 KEGG:dme:Dmel_CG2503
UCSC:CG2503-RA CTD:40593 FlyBase:FBgn0010750 InParanoid:Q9VN55
OMA:ENIEAKV OrthoDB:EOG4X0K7V GenomeRNAi:40593 NextBio:819560
Uniprot:Q9VN55
Length = 538
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 85/123 (69%), Positives = 103/123 (83%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDESGEQFVAYFLPT +TL+KR+ D ++ Y +E+EYEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEE 309
Query: 61 NYFLIVRDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRERFL 120
NYF ++R D +YYNELETRVRL+KRR KVG PNNT+LVV HRPL++ E R+QR RER L
Sbjct: 310 NYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRERQL 369
Query: 121 EPP 123
E P
Sbjct: 370 EVP 372
>ZFIN|ZDB-GENE-050506-101 [details] [associations]
symbol:paf1 "paf1, RNA polymerase II associated
factor, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007507 "heart
development" evidence=IMP] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] ZFIN:ZDB-GENE-050506-101 GO:GO:0007507 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0032968 GO:GO:0016593
GO:GO:0000993 CTD:54623 HOGENOM:HOG000115425 HOVERGEN:HBG053131
KO:K15174 OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:DQ022213 EMBL:BC139613 IPI:IPI00611430
RefSeq:NP_001019624.1 UniGene:Dr.70839 IntAct:Q4U0S5 STRING:Q4U0S5
PRIDE:Q4U0S5 GeneID:553020 KEGG:dre:553020 eggNOG:NOG245460
InParanoid:Q4U0S5 NextBio:20879918 Uniprot:Q4U0S5
Length = 503
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 77/123 (62%), Positives = 87/123 (70%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK D L+Y E+ YEYK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I RD D VYYNELETRVRLSKRR KVGA + N LV HR +N E Q R+
Sbjct: 310 NYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSSTNAVLVCKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|Q2KJ14 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9913 "Bos taurus" [GO:0031442 "positive regulation of mRNA
3'-end processing" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=ISS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISS] [GO:0000993 "RNA polymerase II core binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISS] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 EMBL:BC105570 IPI:IPI00694741
RefSeq:NP_001039758.1 UniGene:Bt.13382 STRING:Q2KJ14 PRIDE:Q2KJ14
GeneID:528744 KEGG:bta:528744 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 InParanoid:Q2KJ14 KO:K15174
OrthoDB:EOG46HG9T NextBio:20874890 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 Uniprot:Q2KJ14
Length = 532
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|F8W9Q2 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 GO:GO:0005634 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:AC005239 HGNC:HGNC:25459
ChiTaRS:PAF1 IPI:IPI01025379 ProteinModelPortal:F8W9Q2
Ensembl:ENST00000221266 UCSC:uc002ole.1 ArrayExpress:F8W9Q2
Bgee:F8W9Q2 Uniprot:F8W9Q2
Length = 462
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 217 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 276
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 277 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 336
Query: 119 FLE 121
LE
Sbjct: 337 QLE 339
>UNIPROTKB|Q8N7H5 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0010390 "histone monoubiquitination" evidence=IDA] [GO:0033523
"histone H2B ubiquitination" evidence=IDA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IDA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISS] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000993 "RNA
polymerase II core binding" evidence=IDA] [GO:0045749 "negative
regulation of S phase of mitotic cell cycle" evidence=IMP]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0031442 "positive regulation of
mRNA 3'-end processing" evidence=IMP] [GO:0001711 "endodermal cell
fate commitment" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 GO:GO:0016055 GO:GO:0045944 GO:GO:0006378
EMBL:CH471126 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985 OMA:VEMMSQA
EMBL:AJ401156 EMBL:AK001985 EMBL:AK098423 EMBL:AC005239
EMBL:BC000017 EMBL:BC013402 IPI:IPI00300333 IPI:IPI00384593
RefSeq:NP_001243755.1 RefSeq:NP_061961.2 UniGene:Hs.466714
ProteinModelPortal:Q8N7H5 DIP:DIP-48673N IntAct:Q8N7H5
STRING:Q8N7H5 DMDM:182670295 PaxDb:Q8N7H5 PRIDE:Q8N7H5
Ensembl:ENST00000221265 GeneID:54623 KEGG:hsa:54623 UCSC:uc002old.3
GeneCards:GC19M039876 HGNC:HGNC:25459 HPA:HPA041875 MIM:610506
neXtProt:NX_Q8N7H5 PharmGKB:PA142671206 InParanoid:Q8N7H5
PhylomeDB:Q8N7H5 ChiTaRS:PAF1 GenomeRNAi:54623 NextBio:57158
ArrayExpress:Q8N7H5 Bgee:Q8N7H5 CleanEx:HS_PAF1
Genevestigator:Q8N7H5 Uniprot:Q8N7H5
Length = 531
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|F1SEH0 [details] [associations]
symbol:PAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] CTD:54623 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 GeneTree:ENSGT00390000001474
OMA:VEMMSQA EMBL:FP236263 RefSeq:XP_003359435.1 UniGene:Ssc.24777
Ensembl:ENSSSCT00000011713 Ensembl:ENSSSCT00000036353
GeneID:100514194 KEGG:ssc:100514194 Uniprot:F1SEH0
Length = 532
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|Q5RAX0 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0001711 "endodermal cell fate commitment" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016593
"Cdc73/Paf1 complex" evidence=ISS] [GO:0031442 "positive regulation
of mRNA 3'-end processing" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0045638 "negative regulation of myeloid
cell differentiation" evidence=ISS] [GO:0045749 "negative
regulation of S phase of mitotic cell cycle" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=ISS] GO:GO:0016055
GO:GO:0045944 GO:GO:0006378 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0045749 GO:GO:0032968 GO:GO:0031442
GO:GO:0016593 GO:GO:0000993 GO:GO:0001711 GO:GO:0045638 CTD:54623
HOVERGEN:HBG053131 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:CR858891 RefSeq:NP_001125634.1 UniGene:Pab.18319
PRIDE:Q5RAX0 GeneID:100172552 KEGG:pon:100172552 InParanoid:Q5RAX0
Uniprot:Q5RAX0
Length = 533
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>MGI|MGI:1923988 [details] [associations]
symbol:Paf1 "Paf1, RNA polymerase II associated factor,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0000993 "RNA polymerase II core
binding" evidence=ISO] [GO:0001711 "endodermal cell fate
commitment" evidence=IMP] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0010390 "histone
monoubiquitination" evidence=ISO] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=ISO] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=ISO] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0033523 "histone H2B ubiquitination" evidence=ISO] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=ISO]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IDA]
MGI:MGI:1923988 GO:GO:0016055 GO:GO:0045944 GO:GO:0006378
GO:GO:0006351 GO:GO:0003682 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174 OrthoDB:EOG46HG9T
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OMA:VEMMSQA EMBL:AB041615
EMBL:AK017762 EMBL:AK134857 EMBL:AK148538 EMBL:BC029843
EMBL:BC083337 IPI:IPI00331654 RefSeq:NP_062331.2 UniGene:Mm.7916
ProteinModelPortal:Q8K2T8 IntAct:Q8K2T8 STRING:Q8K2T8
PhosphoSite:Q8K2T8 PaxDb:Q8K2T8 PRIDE:Q8K2T8
Ensembl:ENSMUST00000003529 GeneID:54624 KEGG:mmu:54624
UCSC:uc009fyu.1 InParanoid:Q8K2T8 NextBio:311440 Bgee:Q8K2T8
Genevestigator:Q8K2T8 Uniprot:Q8K2T8
Length = 535
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>RGD|1306219 [details] [associations]
symbol:Paf1 "Paf1, RNA polymerase II associated factor, homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISO;ISS] [GO:0001711 "endodermal cell fate
commitment" evidence=ISO;ISS] [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=ISO;ISS] [GO:0010390 "histone monoubiquitination"
evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO;ISS]
[GO:0019827 "stem cell maintenance" evidence=IEA;ISO] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISO;ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISO;ISS] [GO:0033523 "histone
H2B ubiquitination" evidence=IEA;ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO;ISS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;ISS] [GO:0071222
"cellular response to lipopolysaccharide" evidence=ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] RGD:1306219 GO:GO:0016055
GO:GO:0045944 GO:GO:0006378 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0045749 GO:GO:0019827 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0000993 GO:GO:0001711 GO:GO:0045638 CTD:54623
eggNOG:NOG297168 HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OMA:VEMMSQA EMBL:BC097494
IPI:IPI00201279 RefSeq:NP_001020069.1 UniGene:Rn.161558
STRING:Q4V886 PhosphoSite:Q4V886 PRIDE:Q4V886
Ensembl:ENSRNOT00000026778 GeneID:361531 KEGG:rno:361531
UCSC:RGD:1306219 InParanoid:Q4V886 NextBio:676629
Genevestigator:Q4V886 Uniprot:Q4V886
Length = 535
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/123 (60%), Positives = 86/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR +N E Q R+
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|Q6P2Y1 [details] [associations]
symbol:paf1 "RNA polymerase II-associated factor 1 homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0000993 "RNA polymerase II core binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] GO:GO:0045944 GO:GO:0006351 GO:GO:0000122
GO:GO:0032968 GO:GO:0016593 GO:GO:0000993 CTD:54623
eggNOG:NOG297168 HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
EMBL:BC064253 RefSeq:NP_989348.1 UniGene:Str.20185
ProteinModelPortal:Q6P2Y1 STRING:Q6P2Y1 GeneID:394974
KEGG:xtr:394974 Xenbase:XB-GENE-5797651 InParanoid:Q6P2Y1
Uniprot:Q6P2Y1
Length = 520
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 75/123 (60%), Positives = 85/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ET+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNAVLVVKHRDMHEKELEAQEARRA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|A2BD83 [details] [associations]
symbol:paf1 "RNA polymerase II-associated factor 1 homolog"
species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0016593 "Cdc73/Paf1 complex" evidence=ISS] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] GO:GO:0045944 GO:GO:0006351 GO:GO:0000122
GO:GO:0032968 GO:GO:0016593 GO:GO:0000993 CTD:54623
HOVERGEN:HBG053131 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:BC130057 RefSeq:NP_001086458.1 UniGene:Xl.29705
GeneID:446278 KEGG:xla:446278 Xenbase:XB-GENE-5797702
Uniprot:A2BD83
Length = 524
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 74/123 (60%), Positives = 85/123 (69%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP +T+ KRK DQ L+Y E Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHRPLNATEFRIQRLRER 118
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR ++ E Q R
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRVKAGVQSGTNALLVVKHRDMHEKELEAQEARRA 369
Query: 119 FLE 121
LE
Sbjct: 370 QLE 372
>UNIPROTKB|G1K1Z2 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9913 "Bos taurus" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0010390 "histone monoubiquitination" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001711 "endodermal cell fate commitment" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0045944 GO:GO:0006378
GO:GO:0071222 GO:GO:0000122 GO:GO:0045749 GO:GO:0019827
GO:GO:0032968 GO:GO:0033523 GO:GO:0010390 GO:GO:0031442
GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 GeneTree:ENSGT00390000001474
OMA:VEMMSQA EMBL:DAAA02047055 Ensembl:ENSBTAT00000027224
Uniprot:G1K1Z2
Length = 355
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 69/105 (65%), Positives = 78/105 (74%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 250 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 309
Query: 61 NYFLIVRD-DAVYYNELETRVRLSKRRQKVGA-APNNTRLVVTHR 103
NYF I R+ D VYYNELETRVRLSKRR K G + N LVV HR
Sbjct: 310 NYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHR 354
>UNIPROTKB|B4DGJ5 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 GO:GO:0005634 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:AC005239 UniGene:Hs.466714
HGNC:HGNC:25459 ChiTaRS:PAF1 EMBL:AK294625 IPI:IPI00908865
STRING:B4DGJ5 Ensembl:ENST00000416728 Uniprot:B4DGJ5
Length = 288
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 54/84 (64%), Positives = 64/84 (76%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLEYTDEQEYEYKMAREYNWNVKSKSCKGYEE 60
MDE G QFVAYFLP ETL KRK DQ ++Y + Y+YK+AREYNWNVK+K+ KGYEE
Sbjct: 197 MDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEE 256
Query: 61 NYFLIVRD-DAVYYNELETRVRLS 83
NYF I R+ D VYYNELET ++ S
Sbjct: 257 NYFFIFREGDGVYYNELETSIQYS 280
>WB|WBGene00008338 [details] [associations]
symbol:C55A6.9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0010171 GO:GO:0040011
GO:GO:0006351 GO:GO:0040035 GO:GO:0016593 eggNOG:NOG297168
KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
EMBL:Z81051 PIR:T20261 RefSeq:NP_505925.1 ProteinModelPortal:P90783
DIP:DIP-27306N MINT:MINT-1084850 STRING:P90783 PaxDb:P90783
EnsemblMetazoa:C55A6.9 GeneID:179583 KEGG:cel:CELE_C55A6.9
UCSC:C55A6.9 CTD:179583 WormBase:C55A6.9
GeneTree:ENSGT00390000001474 HOGENOM:HOG000022517 InParanoid:P90783
OMA:VEMMSQA NextBio:906030 Uniprot:P90783
Length = 425
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 33/124 (26%), Positives = 68/124 (54%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLE--YTDEQEYEYKMAREYNWNVKSKSCKGY 58
M+ ++F A F+PT L +D L LE + ++ +YE+ ++REY + K +
Sbjct: 242 MEFEDQKFAAVFVPTIGCLTSF-MDDLE-LERPFDEDMKYEFLLSREYTF--KMEHLPPR 297
Query: 59 EENYFLIV-RDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRE 117
+ + F++ R++ YNE++ V+++ R+ K+ A ++L +T+R N +E + + +
Sbjct: 298 DRDVFIMYHRNNVFQYNEVDCNVKMT-RKPKM-ALSRKSKLTLTYR--NPSELEQKDMNK 353
Query: 118 RFLE 121
R E
Sbjct: 354 REAE 357
>UNIPROTKB|P90783 [details] [associations]
symbol:C55A6.9 "RNA polymerase II-associated factor 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0016593
"Cdc73/Paf1 complex" evidence=ISS] GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0006355 GO:GO:0010171
GO:GO:0040011 GO:GO:0006351 GO:GO:0040035 GO:GO:0016593
eggNOG:NOG297168 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:Z81051 PIR:T20261 RefSeq:NP_505925.1
ProteinModelPortal:P90783 DIP:DIP-27306N MINT:MINT-1084850
STRING:P90783 PaxDb:P90783 EnsemblMetazoa:C55A6.9 GeneID:179583
KEGG:cel:CELE_C55A6.9 UCSC:C55A6.9 CTD:179583 WormBase:C55A6.9
GeneTree:ENSGT00390000001474 HOGENOM:HOG000022517 InParanoid:P90783
OMA:VEMMSQA NextBio:906030 Uniprot:P90783
Length = 425
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 33/124 (26%), Positives = 68/124 (54%)
Query: 1 MDESGEQFVAYFLPTAETLDKRKLDQLSNLE--YTDEQEYEYKMAREYNWNVKSKSCKGY 58
M+ ++F A F+PT L +D L LE + ++ +YE+ ++REY + K +
Sbjct: 242 MEFEDQKFAAVFVPTIGCLTSF-MDDLE-LERPFDEDMKYEFLLSREYTF--KMEHLPPR 297
Query: 59 EENYFLIV-RDDAVYYNELETRVRLSKRRQKVGAAPNNTRLVVTHRPLNATEFRIQRLRE 117
+ + F++ R++ YNE++ V+++ R+ K+ A ++L +T+R N +E + + +
Sbjct: 298 DRDVFIMYHRNNVFQYNEVDCNVKMT-RKPKM-ALSRKSKLTLTYR--NPSELEQKDMNK 353
Query: 118 RFLE 121
R E
Sbjct: 354 REAE 357
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 175 132 0.00091 102 3 11 23 0.44 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 568 (60 KB)
Total size of DFA: 136 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.97u 0.09s 15.06t Elapsed: 00:00:05
Total cpu time: 14.97u 0.09s 15.06t Elapsed: 00:00:05
Start: Thu Aug 15 15:09:39 2013 End: Thu Aug 15 15:09:44 2013