RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6666
         (175 letters)



>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 450

 Score = 24.8 bits (54), Expect = 6.2
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 13/66 (19%)

Query: 92  APNNTRLVVTHRPLNATEFRIQRLRERFLEPPNEE-------------EEEEDEEEEEEE 138
            PN+ R +V+ R  + +    +   + FL    +E              +  D ++    
Sbjct: 180 IPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYY 239

Query: 139 AEETQQ 144
               ++
Sbjct: 240 LRRAKE 245


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 24.9 bits (53), Expect = 6.5
 Identities = 3/16 (18%), Positives = 6/16 (37%)

Query: 123 PNEEEEEEDEEEEEEE 138
             E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321


>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 359

 Score = 24.4 bits (52), Expect = 8.6
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 119 FLEPPNEEEEEEDEEEEEEEAEE 141
           F     E   E D E  +  A+E
Sbjct: 273 FTSDHIETLYELDIEYSQVLAKE 295


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,873
Number of extensions: 29359
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 46
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.6 bits)