BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6667
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 181 bits (459), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 101/111 (90%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL+ E +HKVEPIT +IG+
Sbjct: 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSG
Sbjct: 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 181 bits (459), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 101/111 (90%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL+ E +HKVEPIT +IG+
Sbjct: 15 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 74
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSG
Sbjct: 75 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 125
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
PSGKL QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG
Sbjct: 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQ-QYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
VYSGMGPDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSG
Sbjct: 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG 125
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGMVYSGMG 65
QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG VYSGMG
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 60
Query: 66 PDYRLLVKKARKIAQ-QYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
PDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSG
Sbjct: 61 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG 106
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 11 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 70
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 71 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 121
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 21 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 81 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 131
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 21 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 81 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 131
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 15 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 74
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 75 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 126
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 5 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 64
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 65 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 116
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 125
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 2 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 61
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 62 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 113
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 15 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 74
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 75 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 126
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 8 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICA 67
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
SG+ D R+L+ +AR AQ +L Y E I ++L +++ Q+YTQ G
Sbjct: 68 ATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYG 118
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++
Sbjct: 13 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 72
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSG
Sbjct: 73 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 124
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++
Sbjct: 13 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 72
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSG
Sbjct: 73 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 124
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++
Sbjct: 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 70
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSG
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 122
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV G ++GI +G+VLA +++ + L + I K+ I D++
Sbjct: 21 PEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
SG+ D R+L+ +AR AQ Y+L Y E I + L +++ I Q YTQ G
Sbjct: 81 ATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHG 131
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 17 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
SG+ D R+L+ +AR AQ +L Y I ++L +++ Q+YTQ G
Sbjct: 77 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 127
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 68
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 19 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 78
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 79 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 130
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 17 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 77 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 128
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 18 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 77
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 78 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 129
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 17 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 77 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 128
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 75
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T
Sbjct: 76 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 124
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 16 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 74
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T
Sbjct: 75 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 123
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 75
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T
Sbjct: 76 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 124
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T
Sbjct: 72 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 120
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 11 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 69
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T
Sbjct: 70 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 118
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 17 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAI 102
SG+ D R +++ AR A + L Y E+I + L Q V +
Sbjct: 77 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDL 119
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 5 LVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIGMVYS 62
+ Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++ + +S
Sbjct: 1 IFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFS 60
Query: 63 GMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
G+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSG
Sbjct: 61 GLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 108
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L ++ K+ + + +
Sbjct: 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ G
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG 125
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L ++ K+ + + +
Sbjct: 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ G
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG 125
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L E + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L E + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA+ A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 17 PEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++
Sbjct: 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF 123
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHK-VEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E+ +K + + ++GM
Sbjct: 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 75
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
+G+ D R L AR+ A ++ + NIP + L RVA + YT
Sbjct: 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYT 123
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHK-VEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E+ +K + + ++GM
Sbjct: 17 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107
+G+ D R L AR+ A ++ + NIP + L RVA + YT
Sbjct: 77 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYT 124
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL KK L E + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY + A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 17 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++
Sbjct: 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF 123
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKK-QKTILFEDCIHKVEPITDYIG 58
P G+L Q+EYA A+ + G SV ++ + V+ T+KK +L + + IT+ IG
Sbjct: 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIG 77
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+
Sbjct: 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA 129
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKK-QKTILFEDCIHKVEPITDYIG 58
P G+L Q+EYA A+ + G SV ++ + V+ T+KK +L + + IT+ IG
Sbjct: 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIG 77
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+
Sbjct: 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA 129
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIH--KVEPITDYIG 58
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L H K+ + ++IG
Sbjct: 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ +G+ D RLL R+ + V+ +P +LV + + Q TQ
Sbjct: 72 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIH--KVEPITDYIG 58
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L H K+ + ++IG
Sbjct: 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ +G+ D RLL R+ + V+ +P +LV + + Q TQ
Sbjct: 72 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS 121
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 15 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 73
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 74 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS 122
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 15 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 73
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 74 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS 122
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS 121
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 16 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 74
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 75 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS 123
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A + S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 21 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 80
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ
Sbjct: 81 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQ 130
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A + S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQ 121
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 15 VEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLV 72
+E G +VGI + +++ATE++ + + K+ I Y GM +G+ D ++LV
Sbjct: 5 LETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLV 64
Query: 73 KKARKIAQQYKLVYQENIPTQQLVQRVAAIMQE 105
+ + + Y+L + N+P + + ++ ++ +
Sbjct: 65 RYMKAELELYRLQRRVNMPIEAVATLLSNMLNQ 97
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 15 VEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLV 72
+E G +VGI + +++ATE++ + + K+ I Y GM +G+ D ++LV
Sbjct: 5 LETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLV 64
Query: 73 KKARKIAQQYKLVYQENIPTQQLVQRVAAIMQE 105
+ + + Y+L + N+P + + ++ ++ +
Sbjct: 65 RYMKAELELYRLQRRVNMPIEAVATLLSNMLNQ 97
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 21 SVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VGI + +++ATE++ + + K+ I Y GM +G+ D ++LV+ +
Sbjct: 3 TVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQE 105
+ Y+L + N+P + + ++ ++ +
Sbjct: 63 LELYRLQRRVNMPIEAVATLLSNMLNQ 89
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 21 SVGIKASNGIVLATEKKQK--TILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VG+ + ++LAT+K+ ++ + K+ I DYI M +G D + +V+
Sbjct: 4 TVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAE 63
Query: 79 AQQYKLVYQENIP 91
A+ YK+ NIP
Sbjct: 64 AKLYKMRTGRNIP 76
>pdb|3AQ9|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q50e Mutant, Fe(Iii) Form
pdb|3AQ9|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q50e Mutant, Fe(Iii) Form
Length = 121
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 31 VLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90
VLA E+ + D H+ + TD++ M+ GP++ K + + + +K + +N+
Sbjct: 28 VLADERVKHFFKNTDMDHQTKQETDFLTMLLG--GPNHY----KGKNMTEAHKGMNLQNL 81
Query: 91 PTQQLVQRVAAIMQE 105
+++ +AA ++E
Sbjct: 82 HFDAIIENLAATLKE 96
>pdb|3AQ8|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q46e Mutant, Fe(Iii) Form
pdb|3AQ8|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q46e Mutant, Fe(Iii) Form
Length = 121
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 31 VLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90
VLA E+ + D H+ + TD++ M+ GP++ K + + + +K + +N+
Sbjct: 28 VLADERVKHFFKNTDMDHETKQQTDFLTMLLG--GPNHY----KGKNMTEAHKGMNLQNL 81
Query: 91 PTQQLVQRVAAIMQE 105
+++ +AA ++E
Sbjct: 82 HFDAIIENLAATLKE 96
>pdb|3AQ7|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Y25f Mutant, Fe(Iii) Form
pdb|3AQ7|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Y25f Mutant, Fe(Iii) Form
Length = 121
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 31 VLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90
VLA E+ + D H+ + TD++ M+ GP++ K + + + +K + +N+
Sbjct: 28 VLADERVKHFFKNTDMDHQTKQQTDFLTMLLG--GPNHY----KGKNMTEAHKGMNLQNL 81
Query: 91 PTQQLVQRVAAIMQE 105
+++ +AA ++E
Sbjct: 82 HFDAIIENLAATLKE 96
>pdb|3AQ5|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ5|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ6|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Iii) Form
pdb|3AQ6|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Iii) Form
Length = 121
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 31 VLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90
VLA E+ + D H+ + TD++ M+ GP++ K + + + +K + +N+
Sbjct: 28 VLADERVKHFFKNTDMDHQTKQQTDFLTMLLG--GPNHY----KGKNMTEAHKGMNLQNL 81
Query: 91 PTQQLVQRVAAIMQE 105
+++ +AA ++E
Sbjct: 82 HFDAIIENLAATLKE 96
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 21 SVGIKASNGIVLATEKKQKTILFEDCIHKVEPITD 55
S G K I A KK K ++ +DC V+PIT+
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 21 SVGIKASNGIVLATEKKQK--TILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VG+ +G+V+ATEK+ + K+ I D + M +G D + L + +
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 79 AQQYKLVYQENIPT 92
A Y+ + +E PT
Sbjct: 63 ANLYE-IRRERKPT 75
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 48 HKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ------QLVQRVAA 101
H EPI + Y G RL V + +KIA +Y ++ NIPT QLV +
Sbjct: 37 HLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVL---NIPTTLIFVNGQLVDSLVG 93
Query: 102 IMQEYT 107
+ E T
Sbjct: 94 AVDEDT 99
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91
+ ++Y + PD R+L ++A + YK VY +P
Sbjct: 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALP 36
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91
+ ++Y + PD R+L ++A + YK VY +P
Sbjct: 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALP 36
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91
+ ++Y + PD R+L ++A + YK VY +P
Sbjct: 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALP 36
>pdb|2A3M|A Chain A, Structure Of Desulfovibrio Desulfuricans G20 Tetraheme
Cytochrome (Oxidized Form)
pdb|2A3P|A Chain A, Structure Of Desulfovibrio Desulfuricans G20 Tetraheme
Cytochrome With Bound Molybdate
Length = 130
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 10 YALAAVEAGAPSVGIKASNGI--VLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPD 67
+AL + A AP+ G+K N V+ + DC H V+ + +G
Sbjct: 17 FALPVIAAEAPADGLKMENTKMPVIFNHSSHSSYQCADCHHPVDGKENLAKCATAGC--- 73
Query: 68 YRLLVKKARKIAQQYKLVYQENIPT 92
+ + KK + + YK+++ T
Sbjct: 74 HDVFDKKDKSVHSYYKIIHDRKATT 98
>pdb|3UWC|A Chain A, Structure Of An Aminotransferase (Degt-Dnrj-Eryc1-Strs
Family) From Coxiella Burnetii In Complex With Pmp
Length = 374
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 13 AAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLV 72
A V+AGA V + + NG V+ EK + I D + P+ Y+G D L
Sbjct: 94 AIVQAGATPVLVDSENGYVIDPEKIEAAI--TDKTKAIXPVH------YTGNIADXPALA 145
Query: 73 KKARK 77
K A+K
Sbjct: 146 KIAKK 150
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKKQK---TILFEDC--IHKVEP 52
A G VG+K +NG+V+A + + + ++C +H++ P
Sbjct: 25 ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISP 68
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 18 GAPSVGIKASNGIVLATEKK 37
GAP++ + A+ GI +AT++K
Sbjct: 62 GAPAIAVSAALGIAVATQRK 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,988,667
Number of Sequences: 62578
Number of extensions: 105601
Number of successful extensions: 343
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 77
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)