Query psy6667
Match_columns 111
No_of_seqs 109 out of 1019
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 00:02:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03751 proteasome_alpha_type_ 100.0 5.1E-38 1.1E-42 219.9 14.5 110 1-110 13-123 (212)
2 cd03750 proteasome_alpha_type_ 100.0 6.2E-38 1.3E-42 221.2 14.9 110 1-110 10-120 (227)
3 cd03755 proteasome_alpha_type_ 100.0 9.7E-38 2.1E-42 217.5 14.8 110 1-110 10-120 (207)
4 cd03752 proteasome_alpha_type_ 100.0 1.7E-37 3.7E-42 217.1 14.9 110 1-110 12-123 (213)
5 cd03754 proteasome_alpha_type_ 100.0 2.7E-37 5.8E-42 216.6 14.6 111 1-111 11-123 (215)
6 KOG0184|consensus 100.0 8E-38 1.7E-42 215.5 11.2 110 1-110 17-127 (254)
7 cd03749 proteasome_alpha_type_ 100.0 8.3E-37 1.8E-41 213.5 14.6 109 1-110 10-118 (211)
8 PTZ00246 proteasome subunit al 100.0 2.7E-36 5.9E-41 215.8 14.8 110 1-110 14-125 (253)
9 cd03756 proteasome_alpha_arche 100.0 4.6E-36 9.9E-41 209.6 15.0 110 1-110 11-121 (211)
10 cd01911 proteasome_alpha prote 100.0 4.1E-36 8.8E-41 209.5 14.6 110 1-110 10-120 (209)
11 cd03753 proteasome_alpha_type_ 100.0 5.1E-36 1.1E-40 209.6 14.9 110 1-110 10-120 (213)
12 TIGR03633 arc_protsome_A prote 100.0 4.9E-36 1.1E-40 211.1 14.9 110 1-110 12-122 (224)
13 PRK03996 proteasome subunit al 100.0 1.3E-35 2.8E-40 211.0 14.9 110 1-110 19-129 (241)
14 COG0638 PRE1 20S proteasome, a 100.0 2E-34 4.3E-39 204.6 14.1 109 1-109 12-123 (236)
15 KOG0176|consensus 100.0 2.9E-35 6.3E-40 200.1 8.9 109 1-109 17-126 (241)
16 KOG0178|consensus 100.0 1.6E-34 3.5E-39 198.0 10.6 111 1-111 14-126 (249)
17 KOG0183|consensus 100.0 4.7E-35 1E-39 201.0 7.5 111 1-111 13-124 (249)
18 KOG0182|consensus 100.0 5.6E-33 1.2E-37 190.5 10.9 110 1-110 18-129 (246)
19 KOG0863|consensus 100.0 2.5E-31 5.4E-36 184.3 9.9 110 1-111 15-124 (264)
20 KOG0181|consensus 100.0 1.1E-30 2.4E-35 177.4 8.7 111 1-111 15-126 (233)
21 cd03761 proteasome_beta_type_5 99.9 7.4E-26 1.6E-30 155.7 12.4 91 19-109 1-93 (188)
22 TIGR03690 20S_bact_beta protea 99.9 6.4E-25 1.4E-29 154.3 12.2 92 17-108 1-94 (219)
23 cd03758 proteasome_beta_type_2 99.9 6.3E-25 1.4E-29 151.7 11.9 91 19-109 2-94 (193)
24 cd03759 proteasome_beta_type_3 99.9 7.3E-25 1.6E-29 151.5 12.0 90 17-106 2-93 (195)
25 PTZ00488 Proteasome subunit be 99.9 1.3E-24 2.8E-29 155.2 12.4 96 14-109 35-132 (247)
26 cd03757 proteasome_beta_type_1 99.9 1.7E-24 3.7E-29 151.5 11.5 92 15-106 5-98 (212)
27 cd03760 proteasome_beta_type_4 99.9 9.7E-24 2.1E-28 146.0 11.3 91 17-109 1-94 (197)
28 cd03762 proteasome_beta_type_6 99.9 1.3E-23 2.8E-28 144.3 11.7 90 19-108 1-92 (188)
29 TIGR03691 20S_bact_alpha prote 99.9 1.8E-23 3.8E-28 147.9 12.0 94 8-107 17-111 (228)
30 PF00227 Proteasome: Proteasom 99.9 1.3E-23 2.7E-28 143.8 10.8 96 15-110 1-99 (190)
31 TIGR03634 arc_protsome_B prote 99.9 2E-23 4.4E-28 142.9 11.8 90 18-107 1-92 (185)
32 cd03763 proteasome_beta_type_7 99.9 2.1E-23 4.6E-28 143.5 11.7 90 19-108 1-92 (189)
33 cd01906 proteasome_protease_Hs 99.9 8.4E-23 1.8E-27 138.9 12.8 91 19-109 1-93 (182)
34 cd01912 proteasome_beta protea 99.9 1.6E-22 3.4E-27 138.6 11.9 90 19-108 1-92 (189)
35 cd03764 proteasome_beta_archea 99.9 2.3E-22 5.1E-27 138.0 11.8 89 19-107 1-91 (188)
36 cd03765 proteasome_beta_bacter 99.9 2.4E-22 5.2E-27 142.7 12.0 91 20-110 2-99 (236)
37 KOG0179|consensus 99.8 2.4E-20 5.2E-25 128.1 8.9 90 16-105 27-118 (235)
38 KOG0174|consensus 99.8 4.4E-19 9.5E-24 120.8 8.8 95 14-108 15-111 (224)
39 KOG0180|consensus 99.8 6.9E-19 1.5E-23 118.0 9.0 92 16-107 6-99 (204)
40 cd01913 protease_HslV Protease 99.8 2.9E-18 6.4E-23 116.4 9.3 70 19-88 1-73 (171)
41 cd01901 Ntn_hydrolase The Ntn 99.8 2.2E-17 4.7E-22 108.8 12.7 90 19-108 1-92 (164)
42 PRK05456 ATP-dependent proteas 99.8 9.4E-18 2E-22 114.2 9.9 80 18-102 1-83 (172)
43 TIGR03692 ATP_dep_HslV ATP-dep 99.7 6.5E-18 1.4E-22 114.7 8.3 79 19-102 1-82 (171)
44 KOG0185|consensus 99.7 1.7E-17 3.7E-22 115.8 8.0 96 12-107 35-133 (256)
45 KOG0175|consensus 99.7 3.9E-17 8.5E-22 115.2 9.2 94 16-109 69-164 (285)
46 KOG0177|consensus 99.7 3.2E-16 7E-21 106.3 8.6 90 19-108 2-93 (200)
47 KOG0173|consensus 99.5 1.7E-14 3.7E-19 101.7 7.0 98 12-109 31-130 (271)
48 PF10584 Proteasome_A_N: Prote 99.1 6.4E-11 1.4E-15 54.7 1.7 14 1-14 10-23 (23)
49 COG5405 HslV ATP-dependent pro 98.3 7.2E-07 1.6E-11 59.8 3.7 67 17-83 3-72 (178)
50 COG3484 Predicted proteasome-t 93.7 0.45 9.8E-06 33.6 6.7 85 19-104 2-93 (255)
51 PF09894 DUF2121: Uncharacteri 81.4 1.1 2.3E-05 31.3 1.7 34 73-106 127-161 (194)
52 PF15286 Bcl-2_3: Apoptosis re 63.3 17 0.00037 23.1 3.8 43 60-103 23-65 (126)
53 COG4728 Uncharacterized protei 58.4 12 0.00027 23.6 2.6 31 49-79 9-39 (124)
54 PF04539 Sigma70_r3: Sigma-70 55.5 34 0.00073 19.4 4.1 29 72-100 3-31 (78)
55 PF08140 Cuticle_1: Crustacean 55.0 18 0.00039 18.8 2.4 26 1-33 8-33 (40)
56 PF01726 LexA_DNA_bind: LexA D 50.5 35 0.00077 19.3 3.5 24 77-100 13-36 (65)
57 COG4079 Uncharacterized protei 49.8 12 0.00025 27.4 1.6 85 19-105 2-161 (293)
58 PF10055 DUF2292: Uncharacteri 48.9 4.7 0.0001 20.7 -0.3 12 2-13 24-35 (38)
59 PRK11508 sulfur transfer prote 48.0 69 0.0015 20.2 5.0 35 64-102 39-73 (109)
60 TIGR03342 dsrC_tusE_dsvC sulfu 47.3 71 0.0015 20.1 5.0 35 64-102 38-72 (108)
61 PRK14752 delta-hemolysin; Prov 45.8 29 0.00062 17.8 2.3 19 91-109 26-44 (44)
62 PF01242 PTPS: 6-pyruvoyl tetr 43.7 38 0.00083 21.2 3.3 46 62-107 43-98 (123)
63 COG0279 GmhA Phosphoheptose is 43.2 29 0.00063 23.8 2.7 23 11-33 129-151 (176)
64 TIGR03172 probable selenium-de 42.1 34 0.00073 24.5 3.0 74 28-101 99-177 (232)
65 COG4537 ComGC Competence prote 41.5 76 0.0016 20.0 4.1 28 69-96 50-78 (107)
66 PF01923 Cob_adeno_trans: Coba 39.4 80 0.0017 21.0 4.4 41 67-107 119-159 (163)
67 PF06018 CodY: CodY GAF-like d 38.2 80 0.0017 21.7 4.3 36 71-106 2-37 (177)
68 TIGR00636 PduO_Nterm ATP:cob(I 37.5 96 0.0021 21.1 4.6 40 68-107 117-156 (171)
69 PF13734 Inhibitor_I69: Spi pr 37.1 27 0.00057 21.6 1.7 19 22-40 46-64 (96)
70 cd05781 DNA_polB_B3_exo DEDDy 37.0 30 0.00066 23.6 2.1 35 44-78 53-87 (188)
71 COG2096 cob(I)alamin adenosylt 36.9 1.1E+02 0.0024 21.2 4.8 40 67-106 124-163 (184)
72 KOG0097|consensus 33.5 1.5E+02 0.0032 20.1 4.8 85 25-109 82-178 (215)
73 PF10668 Phage_terminase: Phag 32.2 88 0.0019 17.6 3.1 25 76-100 9-33 (60)
74 COG2920 DsrC Dissimilatory sul 32.0 1.4E+02 0.0029 18.9 4.3 34 65-102 42-75 (111)
75 COG5469 Predicted metal-bindin 31.8 61 0.0013 21.5 2.8 32 65-96 38-70 (143)
76 PRK02925 glucuronate isomerase 31.2 79 0.0017 25.2 3.8 51 57-107 400-459 (466)
77 PF05823 Gp-FAR-1: Nematode fa 30.6 1.7E+02 0.0036 19.5 5.1 47 61-107 71-119 (154)
78 TIGR00039 6PTHBS 6-pyruvoyl te 30.6 54 0.0012 20.8 2.4 45 62-106 45-97 (124)
79 smart00481 POLIIIAc DNA polyme 30.5 89 0.0019 17.1 3.1 27 2-28 12-38 (67)
80 KOG0083|consensus 29.2 55 0.0012 21.9 2.2 19 17-35 8-26 (192)
81 PF11238 DUF3039: Protein of u 28.3 59 0.0013 18.2 1.9 22 11-32 17-38 (58)
82 PF01171 ATP_bind_3: PP-loop f 27.5 94 0.002 20.7 3.3 24 56-80 1-24 (182)
83 PF03483 B3_4: B3/4 domain; I 27.0 77 0.0017 21.3 2.8 62 44-106 107-172 (174)
84 COG0282 ackA Acetate kinase [E 26.0 32 0.00069 26.7 0.8 19 58-76 272-290 (396)
85 PLN02696 1-deoxy-D-xylulose-5- 26.0 5.9 0.00013 31.2 -3.2 87 8-96 163-270 (454)
86 PF13066 DUF3929: Protein of u 25.8 81 0.0018 17.5 2.2 21 14-34 41-61 (65)
87 KOG0092|consensus 24.2 52 0.0011 23.1 1.5 80 24-103 75-166 (200)
88 PRK04158 transcriptional repre 23.3 2.2E+02 0.0048 20.9 4.6 36 70-105 3-38 (256)
89 PF05066 HARE-HTH: HB1, ASXL, 23.2 1.5E+02 0.0033 16.6 3.2 24 79-102 7-30 (72)
90 PF11950 DUF3467: Protein of u 23.0 1.4E+02 0.0031 17.9 3.2 32 53-88 58-89 (92)
91 PF04358 DsrC: DsrC like prote 21.8 2.2E+02 0.0047 17.9 4.0 35 64-102 39-73 (109)
92 COG2152 Predicted glycosylase 21.6 85 0.0018 23.7 2.3 39 46-84 96-134 (314)
93 PF04315 DUF462: Protein of un 21.5 2.6E+02 0.0056 19.1 4.4 39 62-101 112-150 (164)
94 PF13120 DUF3974: Domain of un 21.4 35 0.00076 21.3 0.2 19 91-109 46-64 (126)
95 PF08289 Flu_M1_C: Influenza M 21.2 2.1E+02 0.0045 17.4 5.3 45 63-107 40-84 (95)
96 PF05372 Delta_lysin: Delta ly 20.8 1.1E+02 0.0023 14.0 1.9 14 94-107 11-24 (25)
97 PF10167 NEP: Uncharacterised 20.6 59 0.0013 20.9 1.1 16 2-17 61-76 (118)
98 PF13592 HTH_33: Winged helix- 20.1 1.7E+02 0.0036 15.9 3.2 26 77-102 9-34 (60)
99 cd07377 WHTH_GntR Winged helix 20.0 1.3E+02 0.0028 15.8 2.4 29 70-98 5-34 (66)
No 1
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-38 Score=219.86 Aligned_cols=110 Identities=35% Similarity=0.568 Sum_probs=106.6
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+|||+|++|+++++||+.+|++.+.+++|.++
T Consensus 13 p~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 92 (212)
T cd03751 13 PDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEA 92 (212)
T ss_pred CCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988777 777899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++|++.+|.+||++.++++|++++|.|||++
T Consensus 93 ~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~ 123 (212)
T cd03751 93 ENYRDNYGTPIPVKVLADRVAMYMHAYTLYS 123 (212)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999985
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-38 Score=221.21 Aligned_cols=110 Identities=75% Similarity=1.087 Sum_probs=106.9
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|++.++++. +++.+||++|++|++|+++|+.+|++.+++++|.++
T Consensus 10 p~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 89 (227)
T cd03750 10 PSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIA 89 (227)
T ss_pred CCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987777 788899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++|++.+|.+||++.++++|++++|.||+++
T Consensus 90 ~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 120 (227)
T cd03750 90 QQYYLVYGEPIPVSQLVREIASVMQEYTQSG 120 (227)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999975
No 3
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.7e-38 Score=217.55 Aligned_cols=110 Identities=32% Similarity=0.563 Sum_probs=106.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|++....+. ++..+||++|++|+++++||+.+|++.+.+++|.++
T Consensus 10 p~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 89 (207)
T cd03755 10 PDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLEC 89 (207)
T ss_pred CCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887776 677899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+.|++++|++|+++.++++|++++|+||+++
T Consensus 90 ~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~ 120 (207)
T cd03755 90 QSHRLTVEDPVTVEYITRYIAGLQQRYTQSG 120 (207)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999874
No 4
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-37 Score=217.13 Aligned_cols=110 Identities=45% Similarity=0.650 Sum_probs=106.7
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.+++++ .+..+||++|++++++++||+.+|++.+.+++|.+
T Consensus 12 p~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 91 (213)
T cd03752 12 PEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLI 91 (213)
T ss_pred CCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887 45889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++.|++++|++|+++.+++.|+.++|.|||++
T Consensus 92 ~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~ 123 (213)
T cd03752 92 AQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYG 123 (213)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999875
No 5
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-37 Score=216.57 Aligned_cols=111 Identities=38% Similarity=0.540 Sum_probs=105.8
Q ss_pred CCCcchhhhhHHHHHhc-CCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~-g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||+||+++ |+|+|||+++||||||+|+|.+.++. .+..+|||+|++++++++||+.+|++.+.+++|.+
T Consensus 11 p~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 90 (215)
T cd03754 11 PEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYE 90 (215)
T ss_pred CCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHH
Confidence 99999999999999975 78999999999999999999988877 66779999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
+..|+++++++||++.+|+.+++++|.||++.+
T Consensus 91 ~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~ 123 (215)
T cd03754 91 AAEFKYKYGYEMPVDVLAKRIADINQVYTQHAY 123 (215)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999753
No 6
>KOG0184|consensus
Probab=100.00 E-value=8e-38 Score=215.52 Aligned_cols=110 Identities=35% Similarity=0.586 Sum_probs=108.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
||||+||||||+|||++++|+||||||||||+++||..+++++ ++.++|||.|++|++++++|+.+|.+.+.+++|.|+
T Consensus 17 pdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea 96 (254)
T KOG0184|consen 17 PDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEA 96 (254)
T ss_pred CCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
.+|+.+|+.|+|...++.++++++|.||.++
T Consensus 97 ~~~~~~y~~piP~~~la~rva~yvh~~Tly~ 127 (254)
T KOG0184|consen 97 ASWRKNYGDPIPGKHLADRVADYVHAFTLYS 127 (254)
T ss_pred HHHHHhcCCCCchHHHHHHHHhhhheeehhh
Confidence 9999999999999999999999999999874
No 7
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.3e-37 Score=213.50 Aligned_cols=109 Identities=35% Similarity=0.551 Sum_probs=103.9
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. +..+|||+|++++++++||+.+|++.+.+++|.++.
T Consensus 10 p~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~-~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~ 88 (211)
T cd03749 10 PQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS-SYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECL 88 (211)
T ss_pred CCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC-CccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887754 344899999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 81 ~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+|+++++++|+++.+|+.+++++|.|||+.
T Consensus 89 ~~~~~~~~~~~v~~la~~is~~~~~~t~~~ 118 (211)
T cd03749 89 NYRFVYDSPIPVSRLVSKVAEKAQINTQRY 118 (211)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999864
No 8
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.7e-36 Score=215.84 Aligned_cols=110 Identities=34% Similarity=0.561 Sum_probs=106.2
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-c-ccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-E-DCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~-~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.+++++ . ++.+|||+|+++++++++|+.+|++.+.+.+|.+
T Consensus 14 p~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 93 (253)
T PTZ00246 14 PEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLY 93 (253)
T ss_pred CCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 4 4679999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+..|++.++.++|++.+++.+++++|.|||++
T Consensus 94 ~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~ 125 (253)
T PTZ00246 94 AQRYRYTYGEPQPVEQLVVQICDLKQSYTQFG 125 (253)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999875
No 9
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-36 Score=209.57 Aligned_cols=110 Identities=40% Similarity=0.649 Sum_probs=106.5
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||+||+++|+|+|||+++||||||+|++.++++. .++.+||++|++++++++||+.+|++.+.++++.++
T Consensus 11 p~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~ 90 (211)
T cd03756 11 PDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEA 90 (211)
T ss_pred CCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987777 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
..|+++++++++++.+++.|++++|.||++.
T Consensus 91 ~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~ 121 (211)
T cd03756 91 QIHRLTYGEPIDVEVLVKKICDLKQQYTQHG 121 (211)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999864
No 10
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4.1e-36 Score=209.49 Aligned_cols=110 Identities=46% Similarity=0.739 Sum_probs=106.3
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+||++++||||+|+|++.+.++. .++.+||++|++++++++||+.+|++.+.++++.++
T Consensus 10 ~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~ 89 (209)
T cd01911 10 PEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEA 89 (209)
T ss_pred CCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988776 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
.+|++++|++|+++.+|+++++++|.||++.
T Consensus 90 ~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~ 120 (209)
T cd01911 90 QNYRYTYGEPIPVEVLVKRIADLAQVYTQYG 120 (209)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999864
No 11
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-36 Score=209.58 Aligned_cols=110 Identities=34% Similarity=0.596 Sum_probs=106.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++++++++||+.+|++.+.+++|.++
T Consensus 10 p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 89 (213)
T cd03753 10 PEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEA 89 (213)
T ss_pred CCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777 777899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+.|++++|++|+++.++++|++++|.||+..
T Consensus 90 ~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~ 120 (213)
T cd03753 90 QNHRFTYNEPMTVESVTQAVSDLALQFGEGD 120 (213)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999853
No 12
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.9e-36 Score=211.08 Aligned_cols=110 Identities=41% Similarity=0.647 Sum_probs=106.3
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++++++++||+.+|++.+.++++.++
T Consensus 12 p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 91 (224)
T TIGR03633 12 PDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEA 91 (224)
T ss_pred CCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987776 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
..|+++++++++++.++++|++++|.|||+.
T Consensus 92 ~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~ 122 (224)
T TIGR03633 92 QINRLTYGEPIDVETLAKKICDLKQQYTQHG 122 (224)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999864
No 13
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-35 Score=210.97 Aligned_cols=110 Identities=39% Similarity=0.625 Sum_probs=106.6
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||+||+++|+|+|||+++||||||+|++.++++. .++.+||++|++++++++||+.+|++.++++++.++
T Consensus 19 p~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~ 98 (241)
T PRK03996 19 PDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEA 98 (241)
T ss_pred CCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999997777 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
..|++.++.+++++.+++++++++|.|||+.
T Consensus 99 ~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 129 (241)
T PRK03996 99 QINRLTYGEPIGVETLTKKICDHKQQYTQHG 129 (241)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999875
No 14
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=204.58 Aligned_cols=109 Identities=44% Similarity=0.708 Sum_probs=105.3
Q ss_pred CCCcchhhhhHHHHHhcC-CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAG-APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARK 77 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g-~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 77 (111)
||||++|+|||++++++| +|+|||+++||||||+|+|.+++++ .++.+|||+|++|++|++||+.+|++.|++++|.
T Consensus 12 p~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~ 91 (236)
T COG0638 12 PEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARA 91 (236)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHH
Confidence 899999999999999885 9999999999999999999999987 6668999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhhcc
Q psy6667 78 IAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 78 ~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~ 109 (111)
+|+.|++.+|++|+++.+++++++++|.|||+
T Consensus 92 ~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~ 123 (236)
T COG0638 92 EAQLYRLRYGEPISVEALAKLLSNILQEYTQS 123 (236)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999983
No 15
>KOG0176|consensus
Probab=100.00 E-value=2.9e-35 Score=200.14 Aligned_cols=109 Identities=35% Similarity=0.586 Sum_probs=106.3
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||||||||++|++.|+|.|||+.++|||||++||.+++++ +....||++||+||+|++||+.+|++.+++++|.+|
T Consensus 17 pEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~ 96 (241)
T KOG0176|consen 17 PEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVET 96 (241)
T ss_pred CCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhcc
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~ 109 (111)
++|.+.||++|+++.+.+.+|++.-.|...
T Consensus 97 qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~ 126 (241)
T KOG0176|consen 97 QNHWFTYGEPISVESLTQAVSDLALRFGEG 126 (241)
T ss_pred hhceeecCCcccHHHHHHHHHHHHhHhCCC
Confidence 999999999999999999999999887654
No 16
>KOG0178|consensus
Probab=100.00 E-value=1.6e-34 Score=198.04 Aligned_cols=111 Identities=40% Similarity=0.596 Sum_probs=108.3
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
||||++|||||++++.+.+|+||+-.+||||||++++.+++++ ....+||+++++|++|+++|+.+|+..|++.+|..
T Consensus 14 pEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~ 93 (249)
T KOG0178|consen 14 PEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARII 93 (249)
T ss_pred CCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998 55669999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
++.|.++||.+||++.|+..++++-|.|||++|
T Consensus 94 AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG 126 (249)
T KOG0178|consen 94 AQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGG 126 (249)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999987
No 17
>KOG0183|consensus
Probab=100.00 E-value=4.7e-35 Score=201.01 Aligned_cols=111 Identities=33% Similarity=0.577 Sum_probs=109.0
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+.+|+|+||++++|+||+..++++..++. .+...||..+|+|++++++|+.+|++.+++++|-||
T Consensus 13 PDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvec 92 (249)
T KOG0183|consen 13 PDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVEC 92 (249)
T ss_pred CCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhh
Confidence 9999999999999999999999999999999999999999999 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
+.|++..+.|++++.++++|+.+-|+|||++|
T Consensus 93 qShrlt~edpvtveyitRyiA~~kQrYTqs~g 124 (249)
T KOG0183|consen 93 QSHRLTLEDPVTVEYITRYIAGLKQRYTQSNG 124 (249)
T ss_pred hhhhcccCCCcHHHHHHHHHHHhhhhhhccCC
Confidence 99999999999999999999999999999986
No 18
>KOG0182|consensus
Probab=100.00 E-value=5.6e-33 Score=190.51 Aligned_cols=110 Identities=35% Similarity=0.520 Sum_probs=107.3
Q ss_pred CCCcchhhhhHHHHHhc-CCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~-g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||+||+++ |-|+||+++||++|+++.|+.+.++. ++....+|+|+++|+|+++|+.+|++..++++|.+
T Consensus 18 peGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~e 97 (246)
T KOG0182|consen 18 PEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYE 97 (246)
T ss_pred CCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHH
Confidence 89999999999999998 88999999999999999999999999 88889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
|.+++++||.+||++.||++++++.|.|||+.
T Consensus 98 Aa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a 129 (246)
T KOG0182|consen 98 AAEFRYKYGYEMPCDILAKRMADKSQVYTQNA 129 (246)
T ss_pred HHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhh
Confidence 99999999999999999999999999999974
No 19
>KOG0863|consensus
Probab=99.97 E-value=2.5e-31 Score=184.29 Aligned_cols=110 Identities=32% Similarity=0.498 Sum_probs=105.2
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (111)
|+|||+|||||++|+++|+++||+|+++.+||+|-+|..+.+. ...+|||+||+|++++++|+.+|++.|++++|.+|.
T Consensus 15 PqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs-s~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~ 93 (264)
T KOG0863|consen 15 PQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS-SHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECL 93 (264)
T ss_pred CcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH-HhhheeEecccccceEEeccCcchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999988885 333799999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 81 ~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
.|+..+++++|+..|...|.+.+|..||..|
T Consensus 94 ~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~yg 124 (264)
T KOG0863|consen 94 NSRFIYGRPLPVLRLVEDLGDKAQENTQRYG 124 (264)
T ss_pred hhhhccCCcccHHHHHHHHHHHHhhhhhhhC
Confidence 9999999999999999999999999999875
No 20
>KOG0181|consensus
Probab=99.97 E-value=1.1e-30 Score=177.39 Aligned_cols=111 Identities=70% Similarity=0.993 Sum_probs=109.0
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|+|+|-|||||+.|+.+|.+.||++-.||||||++|+..+++. .+..+|+++|.++|+|.+||+.+|.+.+++..|..|
T Consensus 15 psGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiA 94 (233)
T KOG0181|consen 15 PSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIA 94 (233)
T ss_pred CCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHH
Confidence 8999999999999999999999999999999999999999999 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
+.|...++++||+..|...++..+|+|||++|
T Consensus 95 e~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgG 126 (233)
T KOG0181|consen 95 EQYYRVYGEPIPTTQLVQEVASVMQEYTQSGG 126 (233)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999987
No 21
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=7.4e-26 Score=155.68 Aligned_cols=91 Identities=14% Similarity=0.273 Sum_probs=87.3
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++.+ +++.+|||+|++|++++++|+.+|++.|++++|.+++.|++++|++||++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998655 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
+++++++|.+|+.
T Consensus 81 ~~ls~~l~~~~~~ 93 (188)
T cd03761 81 KLLSNMLYQYKGM 93 (188)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999986
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.93 E-value=6.4e-25 Score=154.30 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=87.3
Q ss_pred cCCCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy6667 17 AGAPSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQ 94 (111)
Q Consensus 17 ~g~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 94 (111)
+|+|+|||+++||||||+|+|.+++ +. +++.+|||+|++|++++++|+.+|++.|++++|.+++.|+++++.+|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4899999999999999999999985 44 778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy6667 95 LVQRVAAIMQEYTQ 108 (111)
Q Consensus 95 la~~ls~~~~~~t~ 108 (111)
++++|++++|.+++
T Consensus 81 la~~ls~~~~~~~~ 94 (219)
T TIGR03690 81 KANRLAAMVRGNLP 94 (219)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998875
No 23
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.93 E-value=6.3e-25 Score=151.66 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++.+ +++.+|||+|++++++++||+.+|++.|++++|.++..|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999987764 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
+++++++|.|+++
T Consensus 82 ~~l~~~~~~~~~~ 94 (193)
T cd03758 82 NFTRRELAESLRS 94 (193)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999875
No 24
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.93 E-value=7.3e-25 Score=151.50 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=85.1
Q ss_pred cCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy6667 17 AGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQ 94 (111)
Q Consensus 17 ~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 94 (111)
+|+|+|||+++||||||+|++.+++++ .++.+|||+|++|+++++||+.+|++.+++++|.+++.|+++++.+||++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 699999999999999999999999987 556799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy6667 95 LVQRVAAIMQEY 106 (111)
Q Consensus 95 la~~ls~~~~~~ 106 (111)
+|++|+++++..
T Consensus 82 la~~l~~~ly~~ 93 (195)
T cd03759 82 FSSLISSLLYEK 93 (195)
T ss_pred HHHHHHHHHHHh
Confidence 999999998543
No 25
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.92 E-value=1.3e-24 Score=155.25 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=89.5
Q ss_pred HHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy6667 14 AVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (111)
Q Consensus 14 av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (111)
.+++|+|+|||+++||||||+|+|.+.+.+ +++.+|||+|++++++++||+.+|++.|++++|.+++.|++++|++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 357899999999999999999999986544 788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy6667 92 TQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 92 ~~~la~~ls~~~~~~t~~ 109 (111)
++.+|++|++++|.++..
T Consensus 115 v~~la~~ls~~l~~~R~~ 132 (247)
T PTZ00488 115 VAAASKILANIVWNYKGM 132 (247)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999988643
No 26
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=1.7e-24 Score=151.45 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred HhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy6667 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (111)
Q Consensus 15 v~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (111)
+++|+|+|||+++||||||+|++.+++++ +++.+|||+|++++++++||+.+|++.+.+++|.+++.|++++|.+|++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 36899999999999999999999999986 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy6667 93 QQLVQRVAAIMQEY 106 (111)
Q Consensus 93 ~~la~~ls~~~~~~ 106 (111)
+.++++|+++++..
T Consensus 85 ~~la~~ls~~ly~~ 98 (212)
T cd03757 85 EAIAQLLSTILYSR 98 (212)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999764
No 27
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=9.7e-24 Score=146.03 Aligned_cols=91 Identities=14% Similarity=0.243 Sum_probs=82.7
Q ss_pred cCCCEEEEEeCCeEEEEEeccCCC-Ccc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q psy6667 17 AGAPSVGIKASNGIVLATEKKQKT-ILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ-QYKLVYQENIPTQ 93 (111)
Q Consensus 17 ~g~t~vgi~~~dgVvlaad~~~~~-~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 93 (111)
+|+|+|||+++||||||+|+|.++ .+. +++.+|||+|+++++++++|+.+|++.+++++|.+++ .|++.++.+|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999985 445 7788999999999999999999999999999999997 5678899999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy6667 94 QLVQRVAAIMQEYTQS 109 (111)
Q Consensus 94 ~la~~ls~~~~~~t~~ 109 (111)
.++++|++++ |||+
T Consensus 81 ~la~~i~~~~--y~~~ 94 (197)
T cd03760 81 EIHSYLTRVL--YNRR 94 (197)
T ss_pred HHHHHHHHHH--HHHh
Confidence 9999999985 5554
No 28
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=1.3e-23 Score=144.28 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=85.7
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++.+ +++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++.+++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999998655 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+++++++|.+|.
T Consensus 81 ~~l~~~~~~~~~ 92 (188)
T cd03762 81 SLFKNLCYNYKE 92 (188)
T ss_pred HHHHHHHHhccc
Confidence 999999999874
No 29
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.91 E-value=1.8e-23 Score=147.91 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=85.6
Q ss_pred hhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhC
Q psy6667 8 IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ 87 (111)
Q Consensus 8 ieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 87 (111)
=|||+||+++|+|+|||+++||||||+|++. +..+|||+|++|++|+++|+.+|++.++++++.+++.|++.++
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~ 90 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYD 90 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3999999999999999999999999999972 2458999999999999999999999999999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHHhh
Q psy6667 88 -ENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 88 -~~i~~~~la~~ls~~~~~~t 107 (111)
.+++++.+|+.++..++.++
T Consensus 91 ~~~~~v~~la~~~tq~~~~~~ 111 (228)
T TIGR03691 91 RRDVTGRGLANAYAQTLGTIF 111 (228)
T ss_pred CCCccHHHHHHHHHhhccccc
Confidence 68999999987777776544
No 30
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.91 E-value=1.3e-23 Score=143.80 Aligned_cols=96 Identities=31% Similarity=0.551 Sum_probs=89.0
Q ss_pred HhcCCCEEEEEeCCeEEEEEeccCCCCcc---cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy6667 15 VEAGAPSVGIKASNGIVLATEKKQKTILF---EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (111)
Q Consensus 15 v~~g~t~vgi~~~dgVvlaad~~~~~~~~---~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (111)
|++|+|+|||+++||||||+|++.+.+.. ++..+|||+|++++++++||..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999984443 343699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC
Q psy6667 92 TQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 92 ~~~la~~ls~~~~~~t~~~ 110 (111)
++.+++.+++++|.+|++.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~ 99 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRS 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHhhhcccc
Confidence 9999999999999999865
No 31
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.91 E-value=2e-23 Score=142.90 Aligned_cols=90 Identities=30% Similarity=0.433 Sum_probs=85.2
Q ss_pred CCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy6667 18 GAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (111)
Q Consensus 18 g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (111)
|+|+|||+++||||||+|+|.+.+.+ +++.+|||+|++++++++||..+|++.+.++++.+++.|+..++.++|++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999986554 7788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy6667 96 VQRVAAIMQEYT 107 (111)
Q Consensus 96 a~~ls~~~~~~t 107 (111)
+++|++++|.+.
T Consensus 81 a~~l~~~~~~~~ 92 (185)
T TIGR03634 81 ATLLSNILNSNR 92 (185)
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=2.1e-23 Score=143.46 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++.+ .++.+|||+|+++++++++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999998765 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
++|++.+|.|++
T Consensus 81 ~~l~~~l~~~~~ 92 (189)
T cd03763 81 TMLKQHLFRYQG 92 (189)
T ss_pred HHHHHHHHHcCC
Confidence 999999998865
No 33
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.90 E-value=8.4e-23 Score=138.87 Aligned_cols=91 Identities=40% Similarity=0.638 Sum_probs=87.2
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|++.++++. .++.+|||+|+++++++++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999998876 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
+++++++|.+|++
T Consensus 81 ~~l~~~~~~~~~~ 93 (182)
T cd01906 81 KLLANLLYEYTQS 93 (182)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999973
No 34
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=1.6e-22 Score=138.64 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=86.7
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+||++++||||||+|+|.++++. .+..+|||+|++++++++||+.+|++.+.++++.++..|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999998876 77789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+++++++|.+++
T Consensus 81 ~~l~~~~~~~~~ 92 (189)
T cd01912 81 NLLSNILYSYRG 92 (189)
T ss_pred HHHHHHHHhcCC
Confidence 999999999986
No 35
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=2.3e-22 Score=138.04 Aligned_cols=89 Identities=26% Similarity=0.368 Sum_probs=84.7
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++.+ +++.+||++|+++++++++|+.+|++.+.++++.+++.|++.++.+++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998655 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6667 97 QRVAAIMQEYT 107 (111)
Q Consensus 97 ~~ls~~~~~~t 107 (111)
+++++++|.+.
T Consensus 81 ~~i~~~~~~~~ 91 (188)
T cd03764 81 TLLSNILNSSK 91 (188)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 36
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=2.4e-22 Score=142.68 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=83.7
Q ss_pred CEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEcc----CcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC-CCCHH
Q psy6667 20 PSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPIT----DYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE-NIPTQ 93 (111)
Q Consensus 20 t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~ 93 (111)
=+|||+++||||||+|+|+++++. .++.+|||+|+ +|++|+.||+.+|++.+++++|.+++.|++++|. ++|++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 479999999999999999999977 66779999998 9999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHH-HhhccC
Q psy6667 94 QLVQRVAAIMQ-EYTQSG 110 (111)
Q Consensus 94 ~la~~ls~~~~-~~t~~~ 110 (111)
.+|++++++++ .+||++
T Consensus 82 ~la~~i~~~l~~~~~q~~ 99 (236)
T cd03765 82 DAARYVGETLREVQEQDR 99 (236)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 99999999865 556654
No 37
>KOG0179|consensus
Probab=99.83 E-value=2.4e-20 Score=128.12 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=87.1
Q ss_pred hcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy6667 16 EAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ 93 (111)
Q Consensus 16 ~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 93 (111)
.+|+|+|||.+.|++|+|+|+|.++++. +++.+|||+++++++++.||+++|...|...++.+.+.|++.++..|++.
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~ 106 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIH 106 (235)
T ss_pred cCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHH
Confidence 6899999999999999999999999887 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy6667 94 QLVQRVAAIMQE 105 (111)
Q Consensus 94 ~la~~ls~~~~~ 105 (111)
.+|++||.+|+.
T Consensus 107 s~A~lls~~LY~ 118 (235)
T KOG0179|consen 107 SAAQLLSTILYS 118 (235)
T ss_pred HHHHHHHHHHhh
Confidence 999999999974
No 38
>KOG0174|consensus
Probab=99.79 E-value=4.4e-19 Score=120.79 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=91.2
Q ss_pred HHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy6667 14 AVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (111)
Q Consensus 14 av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (111)
.+..|+|++|+++++||||.+|.|++.+.+ ++..+|+-+|.|+|+||-||..+|.|.+.+.++..+..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 367899999999999999999999999977 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy6667 92 TQQLVQRVAAIMQEYTQ 108 (111)
Q Consensus 92 ~~~la~~ls~~~~~~t~ 108 (111)
+...|+.+.++.++|..
T Consensus 95 v~~aA~l~r~~~Y~~re 111 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE 111 (224)
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 99999999999999875
No 39
>KOG0180|consensus
Probab=99.79 E-value=6.9e-19 Score=117.96 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=86.7
Q ss_pred hcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy6667 16 EAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ 93 (111)
Q Consensus 16 ~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 93 (111)
-+|+++||+++|+||.+|+|.|...... ..+.+|||++++++++|.+|+.+|.+.+.++++..-..|+++.++.|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4799999999999999999999986655 77889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy6667 94 QLVQRVAAIMQEYT 107 (111)
Q Consensus 94 ~la~~ls~~~~~~t 107 (111)
.+++++|+++++..
T Consensus 86 ~~s~mvS~~lYekR 99 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKR 99 (204)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998753
No 40
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.77 E-value=2.9e-18 Score=116.40 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=66.4
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccC-cEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITD-YIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 88 (111)
+|+||++++||||||+|+|.+.+.+ .++.+||++|++ |++|+++|..+|.+.|.++++.++++|+.+.++
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~ 73 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR 73 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH
Confidence 5899999999999999999998876 888899999999 999999999999999999999999999999885
No 41
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.76 E-value=2.2e-17 Score=108.83 Aligned_cols=90 Identities=33% Similarity=0.463 Sum_probs=85.8
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+||++++||||+|+|++.+.+.. .....|+++++++++++++|..+|.+.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999988876 56779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+.+++.++.+|+
T Consensus 81 ~~~~~~~~~~~~ 92 (164)
T cd01901 81 KELAKLLQVYTQ 92 (164)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 42
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.75 E-value=9.4e-18 Score=114.22 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=70.3
Q ss_pred CCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEc-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy6667 18 GAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQ 94 (111)
Q Consensus 18 g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 94 (111)
|+|+||++++||||||+|+|.+.+.+ +++.+||++| +++++|++||..+|.+.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 68999999999999999999998876 8888999999 9999999999999999999999999999982 22 466
Q ss_pred HHHHHHHH
Q psy6667 95 LVQRVAAI 102 (111)
Q Consensus 95 la~~ls~~ 102 (111)
+++.+..+
T Consensus 76 ~a~l~~~l 83 (172)
T PRK05456 76 AVELAKDW 83 (172)
T ss_pred HHHHHHHH
Confidence 66555444
No 43
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.75 E-value=6.5e-18 Score=114.72 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEc-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (111)
+|+||++++||||||+|+|.+.+.+ +++.+||++| +++++|+++|..+|.+.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999998876 8888999999 599999999999999999999999999988754 3666
Q ss_pred HHHHHHH
Q psy6667 96 VQRVAAI 102 (111)
Q Consensus 96 a~~ls~~ 102 (111)
++.++++
T Consensus 76 a~l~~~~ 82 (171)
T TIGR03692 76 VELAKDW 82 (171)
T ss_pred HHHHHHH
Confidence 7777764
No 44
>KOG0185|consensus
Probab=99.73 E-value=1.7e-17 Score=115.75 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=86.6
Q ss_pred HHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHH-HHhCC
Q psy6667 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYK-LVYQE 88 (111)
Q Consensus 12 ~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~ 88 (111)
+.+.-+|+++||+|++|||+||||+..+.+.+ .++.+|+|+|++|+++++||..+|.|.|.+.+.....+.. +..|.
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~ 114 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQ 114 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccc
Confidence 34456899999999999999999999998877 8889999999999999999999999999999998888864 55679
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q psy6667 89 NIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 89 ~i~~~~la~~ls~~~~~~t 107 (111)
.+.|+.++++|+++|+.-.
T Consensus 115 ~l~Pk~ih~yltrvlY~rR 133 (256)
T KOG0185|consen 115 SLGPKAIHSYLTRVLYARR 133 (256)
T ss_pred ccChHHHHHHHHHHHHHhh
Confidence 9999999999999998644
No 45
>KOG0175|consensus
Probab=99.72 E-value=3.9e-17 Score=115.23 Aligned_cols=94 Identities=16% Similarity=0.275 Sum_probs=89.8
Q ss_pred hcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy6667 16 EAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ 93 (111)
Q Consensus 16 ~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 93 (111)
.+|+|++|.+++.|||+|+|.|++.+.+ ....+||..|++++.-+.+|=.+|++..-+.+..+|.+|++++++.|+|.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 5899999999999999999999998876 78889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy6667 94 QLVQRVAAIMQEYTQS 109 (111)
Q Consensus 94 ~la~~ls~~~~~~t~~ 109 (111)
..+++||++++.|.-.
T Consensus 149 aASKllsN~~y~YkGm 164 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGM 164 (285)
T ss_pred HHHHHHHHHHhhccCc
Confidence 9999999999998643
No 46
>KOG0177|consensus
Probab=99.67 E-value=3.2e-16 Score=106.29 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
.+++||++.|+|++|+|+....+.+ .++.+|++++++++.++++|..+|...+.+++...++.|+.++|.++||+.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 4789999999999999999888776 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+.+-+-+.++-.
T Consensus 82 hFtR~~La~~LR 93 (200)
T KOG0177|consen 82 HFTRRELAESLR 93 (200)
T ss_pred HHHHHHHHHHHh
Confidence 999888876643
No 47
>KOG0173|consensus
Probab=99.54 E-value=1.7e-14 Score=101.66 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=90.2
Q ss_pred HHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCC
Q psy6667 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQEN 89 (111)
Q Consensus 12 ~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 89 (111)
.++.+.|+|++|+.+|||||+++|+|++.+.. .++.+||+.+.++|+|+-+|-.+|...+.+.+..+..+|++..+++
T Consensus 31 p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 31 PKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred CcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 34567899999999999999999999998876 7888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcc
Q psy6667 90 IPTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 90 i~~~~la~~ls~~~~~~t~~ 109 (111)
++|-..-.++-..|+.|--+
T Consensus 111 ~rVv~A~~mlkQ~LFrYqG~ 130 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQGH 130 (271)
T ss_pred CceeeHHHHHHHHHHHhcCc
Confidence 99999999998888888544
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.07 E-value=6.4e-11 Score=54.68 Aligned_cols=14 Identities=57% Similarity=1.092 Sum_probs=13.5
Q ss_pred CCCcchhhhhHHHH
Q psy6667 1 PSGKLVQIEYALAA 14 (111)
Q Consensus 1 p~Gri~Qieya~~a 14 (111)
|||||+|||||+||
T Consensus 10 p~Grl~QVEYA~~A 23 (23)
T PF10584_consen 10 PDGRLFQVEYAMKA 23 (23)
T ss_dssp TTSSBHHHHHHHHH
T ss_pred CCCeEEeeEeeecC
Confidence 89999999999997
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.2e-07 Score=59.81 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=55.7
Q ss_pred cCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEc-cCcEEEEEecchhhHHHHHHHHHHHHHHHH
Q psy6667 17 AGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYK 83 (111)
Q Consensus 17 ~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 83 (111)
+++|+++++-++-|+||+|...+.+.. ..+..|+.+| +.+++.+++|..+|+..|.+.+..+++.|.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~ 72 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ 72 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc
Confidence 579999999999999999998876654 4444555444 458999999999999999999999998874
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.45 Score=33.56 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=56.1
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEc---cCc-EEEEEecchhhHHHHHHHHHHHHHH--HHHHhCCCCC
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPI---TDY-IGMVYSGMGPDYRLLVKKARKIAQQ--YKLVYQENIP 91 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~--~~~~~~~~i~ 91 (111)
+=|||++...|.|+++|.|+..+.= -...+|.|.. +++ +++..+|..+=.|.+...+.+..+. .+...+ -.+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n-~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLN-IPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhc-chh
Confidence 3489999999999999999876643 2223454433 233 4567899999999999888877752 222222 235
Q ss_pred HHHHHHHHHHHHH
Q psy6667 92 TQQLVQRVAAIMQ 104 (111)
Q Consensus 92 ~~~la~~ls~~~~ 104 (111)
+-..+.++++...
T Consensus 81 m~eattlvgetvr 93 (255)
T COG3484 81 MYEATTLVGETVR 93 (255)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666666554
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=81.43 E-value=1.1 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHh
Q psy6667 73 KKARKIAQQYKLV-YQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~i~~~~la~~ls~~~~~~ 106 (111)
+++++.+..+-.. +...|+++.+.+.+-.++.+-
T Consensus 127 k~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~ 161 (194)
T PF09894_consen 127 KFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEV 161 (194)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5556666665333 346789999999998888765
No 52
>PF15286 Bcl-2_3: Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like; PDB: 3BL2_B 3DVU_B 2ABO_A.
Probab=63.26 E-value=17 Score=23.06 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=32.8
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6667 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIM 103 (111)
Q Consensus 60 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 103 (111)
.-||..+|...++...++...+|+-.++...++ .+.++..++.
T Consensus 23 v~s~vL~DV~~i~~LTqeF~~~YdSVy~~d~~~-a~~nW~~~l~ 65 (126)
T PF15286_consen 23 VDSGVLADVSKIITLTQEFRTHYDSVYGKDYGP-ALSNWKNNLT 65 (126)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHSSTSGG-GGTTHHHHHH
T ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHhcccCCh-HHHHHHhhHH
Confidence 458899999999999999999999999987655 3334444333
No 53
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.35 E-value=12 Score=23.55 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=27.1
Q ss_pred eEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 49 KVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 49 ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
-+|+|-+..++.+.|..+|...+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4789999999999999999999998888654
No 54
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=55.46 E-value=34 Score=19.42 Aligned_cols=29 Identities=3% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy6667 72 VKKARKIAQQYKLVYQENIPTQQLVQRVA 100 (111)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls 100 (111)
.++++.-......+.|++++.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 45566666777888999999999998875
No 55
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=55.00 E-value=18 Score=18.76 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=17.4
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEE
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLA 33 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvla 33 (111)
|||+..|+. .+..-|.+.+..|+|+.
T Consensus 8 ~dG~~~q~~-------~~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 8 PDGTNVQFP-------HGVANIVLIGPSGAVLS 33 (40)
T ss_pred CCCCEEECC-------cccceEEEECCceEEee
Confidence 677777763 33335677788887765
No 56
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=50.54 E-value=35 Score=19.27 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHH
Q psy6667 77 KIAQQYKLVYQENIPTQQLVQRVA 100 (111)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~la~~ls 100 (111)
.....|-..+|.++++..+++.++
T Consensus 13 ~~I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 13 EFIREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhC
Confidence 344566777999999999998764
No 57
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.79 E-value=12 Score=27.37 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCEEEEEeCCeEEEEEeccCCC-----------------------------------Ccc-cccceeEEEccCcEEEEEe
Q psy6667 19 APSVGIKASNGIVLATEKKQKT-----------------------------------ILF-EDCIHKVEPITDYIGMVYS 62 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~-----------------------------------~~~-~~~~~ki~~i~~~i~~~~s 62 (111)
+.+|+..+++|.|+|.|+|.-. ++. .++-.|+.++++.+.++=.
T Consensus 2 tLviay~gknGaviaGDrR~i~frgdee~re~lEekLYsGeIkteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV 81 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREITFRGDEEDREKLEEKLYSGEIKTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEV 81 (293)
T ss_pred eEEEEEecCCCcEEeccceEEEEecChhHHHHHHHHhhcCccccHHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEe
Confidence 4578999999999999988621 122 4455688888887777633
Q ss_pred cchh--------------------------------h-------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6667 63 GMGP--------------------------------D-------YRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIM 103 (111)
Q Consensus 63 G~~~--------------------------------D-------~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 103 (111)
+... + ...+.+.+.+++. +.++...++++.+++.|-.++
T Consensus 82 ~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~Ke~anefl--k~~l~~k~~lqd~~dal~elf 159 (293)
T COG4079 82 SSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTKEVANEFL--KDNLTKKSKLQDAVDALMELF 159 (293)
T ss_pred ecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHH
Confidence 2221 2 2233344443333 366788899999999888877
Q ss_pred HH
Q psy6667 104 QE 105 (111)
Q Consensus 104 ~~ 105 (111)
-.
T Consensus 160 e~ 161 (293)
T COG4079 160 ET 161 (293)
T ss_pred HH
Confidence 54
No 58
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=48.91 E-value=4.7 Score=20.69 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=9.6
Q ss_pred CCcchhhhhHHH
Q psy6667 2 SGKLVQIEYALA 13 (111)
Q Consensus 2 ~Gri~Qieya~~ 13 (111)
|||+.|||...|
T Consensus 24 dG~vvQIe~~EK 35 (38)
T PF10055_consen 24 DGRVVQIEKTEK 35 (38)
T ss_pred CCEEEEEEhhhh
Confidence 799999987544
No 59
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=48.04 E-value=69 Score=20.24 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6667 64 MGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAI 102 (111)
Q Consensus 64 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~ 102 (111)
+..|.-.+++++|+ |..+++..+++..|++.+...
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 73 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANK 73 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 56777788888885 667789999999999987653
No 60
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=47.34 E-value=71 Score=20.15 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6667 64 MGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAI 102 (111)
Q Consensus 64 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~ 102 (111)
+..|.-.+++++|+ |..+++..+++..|++.+...
T Consensus 38 LT~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 72 (108)
T TIGR03342 38 LTEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKK 72 (108)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 56777788888875 667789999999999887653
No 61
>PRK14752 delta-hemolysin; Provisional
Probab=45.77 E-value=29 Score=17.82 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHhhcc
Q psy6667 91 PTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 91 ~~~~la~~ls~~~~~~t~~ 109 (111)
++..+.+++-+..|+|||+
T Consensus 26 tig~~vk~ii~tv~kft~k 44 (44)
T PRK14752 26 TIGDLVKWIIDTVNKFTKK 44 (44)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 4567888888999999985
No 62
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=43.68 E-value=38 Score=21.24 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=29.3
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHhC------C----CCCHHHHHHHHHHHHHHhh
Q psy6667 62 SGMGPDYRLLVKKARKIAQQYKLVYQ------E----NIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~~~~~~~~~------~----~i~~~~la~~ls~~~~~~t 107 (111)
.|+.-|...+.+.++..+..+...+= . .++++.+|.++.+.+...-
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 57777888888888875554422211 1 2789999999999887643
No 63
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.19 E-value=29 Score=23.84 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHHHHhcCCCEEEEEeCCeEEEE
Q psy6667 11 ALAAVEAGAPSVGIKASNGIVLA 33 (111)
Q Consensus 11 a~~av~~g~t~vgi~~~dgVvla 33 (111)
..+|.++|-++||+.++||=-|+
T Consensus 129 i~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 129 IEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred HHHHHHcCCEEEEEecCCCcccc
Confidence 34566889999999999987766
No 64
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=42.08 E-value=34 Score=24.50 Aligned_cols=74 Identities=15% Similarity=0.026 Sum_probs=50.1
Q ss_pred CeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHH-HH-HHHH--HHHHHHhCCCCCHHHHHHHHHH
Q psy6667 28 NGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVK-KA-RKIA--QQYKLVYQENIPTQQLVQRVAA 101 (111)
Q Consensus 28 dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~-~~-~~~~--~~~~~~~~~~i~~~~la~~ls~ 101 (111)
|.|++=||-....++- +.+.+-+.+-..+..+++.|+.+=.+.+.+ .+ |-+. ..-...-|..++++.+++.|++
T Consensus 99 D~vLVEADGAk~~PlKaP~~~EPVIP~~t~~VI~V~gl~alG~pl~~e~vHR~e~~~~i~~~~~g~~it~~~la~li~~ 177 (232)
T TIGR03172 99 DVILVEADGAKCRPLKAPSDHEPVIPKSSTTVIGVAGISVVGEKLDTDIVHRWPEFLALTGLAPGDTITLALLARLIAH 177 (232)
T ss_pred CEEEEECCCcCCCcccCCCCCCCccCCCCCEEEEEeCHHHcCCcCChhhccCHHHHHHHHCCCCCCccCHHHHHHHHhC
Confidence 5677778877666776 666677777777788999999887777653 22 2111 1112234777999999998864
No 65
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=41.49 E-value=76 Score=19.95 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Q psy6667 69 RLLVKKARKIAQQYKLVYQE-NIPTQQLV 96 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~-~i~~~~la 96 (111)
..+++.+...+..|+..+++ ++|.+.|-
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~ 78 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDLK 78 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 36888999999999999998 77776654
No 66
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=39.42 E-value=80 Score=21.04 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q psy6667 67 DYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 67 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t 107 (111)
-++.+++++...+-...........+-...|+||++++...
T Consensus 119 ~aRtv~RraER~~v~l~~~~~v~~~il~ylNRLSd~lfvla 159 (163)
T PF01923_consen 119 VARTVCRRAERRAVRLFREEEVRPDILRYLNRLSDYLFVLA 159 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555555555667778899999998653
No 67
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=38.18 E-value=80 Score=21.73 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 71 LVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 71 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
|.++.|..-..-....+.+++.+.+|..||+.+..+
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~aN 37 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLEAN 37 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhcCc
Confidence 455666655555556899999999999999998643
No 68
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=37.46 E-value=96 Score=21.13 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q psy6667 68 YRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 68 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t 107 (111)
++.+++++...+-......+.+.++-...|+||++++...
T Consensus 117 aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD~lFvlA 156 (171)
T TIGR00636 117 ARTVARRAERRVVALLKEEEINEVVLVYLNRLSDLLFVLA 156 (171)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455565555554443333334566678899999997653
No 69
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=37.05 E-value=27 Score=21.58 Aligned_cols=19 Identities=0% Similarity=0.080 Sum_probs=13.0
Q ss_pred EEEEeCCeEEEEEeccCCC
Q psy6667 22 VGIKASNGIVLATEKKQKT 40 (111)
Q Consensus 22 vgi~~~dgVvlaad~~~~~ 40 (111)
+-..++++||+++|+|...
T Consensus 46 ~N~~~~GFVIVSgDdr~~~ 64 (96)
T PF13734_consen 46 FNDNNKGFVIVSGDDRMGP 64 (96)
T ss_dssp EEETTS-EEEEESBTTS-S
T ss_pred EEcCCCEEEEEECCCCccc
Confidence 3345678999999999873
No 70
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=36.99 E-value=30 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=29.6
Q ss_pred cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 44 EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 44 ~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
....+-|-..++.++++..|..-|...|.++++..
T Consensus 53 ~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~~ 87 (188)
T cd05781 53 REFVKYVKEYDPDIIVGYNSNAFDWPYLVERARVL 87 (188)
T ss_pred HHHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHHh
Confidence 44556777889999999999999999999998753
No 71
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=36.86 E-value=1.1e+02 Score=21.20 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 67 DYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 67 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
=++.+++++...+-......+...++-...|+||++++..
T Consensus 124 ~ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~~ 163 (184)
T COG2096 124 VARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFVL 163 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 3567777777777776666677777778889999999764
No 72
>KOG0097|consensus
Probab=33.53 E-value=1.5e+02 Score=20.06 Aligned_cols=85 Identities=7% Similarity=-0.001 Sum_probs=52.5
Q ss_pred EeCCeEEEEEe--ccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCC---------CCH
Q psy6667 25 KASNGIVLATE--KKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQEN---------IPT 92 (111)
Q Consensus 25 ~~~dgVvlaad--~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~---------i~~ 92 (111)
++.-|.+|.-| +|.+...+ ++-.+-----++|..+-..|..+|....-+.--+|+..+...+|-. -++
T Consensus 82 rgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 82 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred ccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence 34456667766 33444433 2211111123788888999999999988888888888887776532 245
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy6667 93 QQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 93 ~~la~~ls~~~~~~t~~ 109 (111)
+...-..+..++.+-|-
T Consensus 162 edafle~akkiyqniqd 178 (215)
T KOG0097|consen 162 EDAFLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 65555556666655554
No 73
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=32.16 E-value=88 Score=17.59 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q psy6667 76 RKIAQQYKLVYQENIPTQQLVQRVA 100 (111)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~~la~~ls 100 (111)
|++|.......+..|+...+|..|+
T Consensus 9 rdkA~e~y~~~~g~i~lkdIA~~Lg 33 (60)
T PF10668_consen 9 RDKAFEIYKESNGKIKLKDIAEKLG 33 (60)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHC
Confidence 5677777788888999999998875
No 74
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=31.98 E-value=1.4e+02 Score=18.93 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6667 65 GPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAI 102 (111)
Q Consensus 65 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~ 102 (111)
..+.=.++.++| .|...|+..+++.+|.+.++..
T Consensus 42 T~eHWevv~fvR----~fy~ef~tsPaiRMLvK~~~~~ 75 (111)
T COG2920 42 TEEHWEVVRFVR----EFYEEFNTSPAIRMLVKAMAKK 75 (111)
T ss_pred cHHHHHHHHHHH----HHHHHHCCCchHHHHHHHHHHH
Confidence 444455566555 5667799999999999888743
No 75
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=31.78 E-value=61 Score=21.47 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCC-CHHHHH
Q psy6667 65 GPDYRLLVKKARKIAQQYKLVYQENI-PTQQLV 96 (111)
Q Consensus 65 ~~D~~~l~~~~~~~~~~~~~~~~~~i-~~~~la 96 (111)
..|.+.|.+++.+.++++...++.+| +|+-|+
T Consensus 38 p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~ 70 (143)
T COG5469 38 PSDGSILLDKLQELAQEWEIAHEFEIQTVECLA 70 (143)
T ss_pred CCcHHHHHHHHHHHHhhhhhhccceeeeeHhhh
Confidence 57889999999999999999988777 444443
No 76
>PRK02925 glucuronate isomerase; Reviewed
Probab=31.21 E-value=79 Score=25.17 Aligned_cols=51 Identities=20% Similarity=0.091 Sum_probs=33.3
Q ss_pred EEEEEecchhhHHHHHHHHHHHHH-----HH---HHHhCCCC-CHHHHHHHHHHHHHHhh
Q psy6667 57 IGMVYSGMGPDYRLLVKKARKIAQ-----QY---KLVYQENI-PTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 57 i~~~~sG~~~D~~~l~~~~~~~~~-----~~---~~~~~~~i-~~~~la~~ls~~~~~~t 107 (111)
..-.+.|+..|++.+..+-|.+-. ++ ....|+-+ +.+.+.+.+.++.+.+-
T Consensus 400 lls~fvGmltDSRsflSy~RHeyFRRilc~~lg~~Ve~G~~P~d~~~l~~iv~dI~y~Na 459 (466)
T PRK02925 400 LLSNFVGMLTDSRSFLSYARHEYFRRILCNFLGRWVEEGELPADEELLGEMVKDICYNNA 459 (466)
T ss_pred chhhcccccccHHHHHhhhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhH
Confidence 344589999999999977654432 21 12234333 67778888888877653
No 77
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=30.60 E-value=1.7e+02 Score=19.50 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=27.7
Q ss_pred EecchhhHHHHHHHHHHHHHHH--HHHhCCCCCHHHHHHHHHHHHHHhh
Q psy6667 61 YSGMGPDYRLLVKKARKIAQQY--KLVYQENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 61 ~sG~~~D~~~l~~~~~~~~~~~--~~~~~~~i~~~~la~~ls~~~~~~t 107 (111)
+.++.++++.+++.+...+..- ....|.+++.+.+-.....++..|.
T Consensus 71 i~~L~peak~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~yk 119 (154)
T PF05823_consen 71 IDKLSPEAKAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYK 119 (154)
T ss_dssp TTT--HHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHH
Confidence 4678899999998888776443 4457999988888777777777665
No 78
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=30.58 E-value=54 Score=20.81 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=31.1
Q ss_pred ecchhhHHHHHHHHHHHHH---HHHHHh-----CCCCCHHHHHHHHHHHHHHh
Q psy6667 62 SGMGPDYRLLVKKARKIAQ---QYKLVY-----QENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~~---~~~~~~-----~~~i~~~~la~~ls~~~~~~ 106 (111)
.|+.-|...+.+.++..+. +|++.+ ...++.+.+|.++-+.+...
T Consensus 45 ~G~viDf~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~pT~Enia~~i~~~l~~~ 97 (124)
T TIGR00039 45 TGMVMDFSDLKKIVKEVIDEPLDHKLLNDDVNYLENPTSENVAVYIFDNLKEY 97 (124)
T ss_pred ceEEEEHHHHHHHHHHHhccCCCCceeccCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4666777777777776663 344333 34579999999999887754
No 79
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=30.48 E-value=89 Score=17.05 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCcchhhhhHHHHHhcCCCEEEEEeCC
Q psy6667 2 SGKLVQIEYALAAVEAGAPSVGIKASN 28 (111)
Q Consensus 2 ~Gri~Qieya~~av~~g~t~vgi~~~d 28 (111)
+|.+.--+|...|..+|-..+|+.-.+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 677777889999999999999997665
No 80
>KOG0083|consensus
Probab=29.18 E-value=55 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.5
Q ss_pred cCCCEEEEEeCCeEEEEEe
Q psy6667 17 AGAPSVGIKASNGIVLATE 35 (111)
Q Consensus 17 ~g~t~vgi~~~dgVvlaad 35 (111)
.|.|++-|++|||..++..
T Consensus 8 ~gktcllir~kdgafl~~~ 26 (192)
T KOG0083|consen 8 TGKTCLLIRFKDGAFLAGN 26 (192)
T ss_pred cCceEEEEEeccCceecCc
Confidence 5889999999999998853
No 81
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.27 E-value=59 Score=18.23 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.8
Q ss_pred HHHHHhcCCCEEEEEeCCeEEE
Q psy6667 11 ALAAVEAGAPSVGIKASNGIVL 32 (111)
Q Consensus 11 a~~av~~g~t~vgi~~~dgVvl 32 (111)
..++.-+|+.++|+.|+=++..
T Consensus 17 I~esav~G~pVvALCGk~wvp~ 38 (58)
T PF11238_consen 17 IAESAVMGTPVVALCGKVWVPT 38 (58)
T ss_pred HHHHHhcCceeEeeeCceeCCC
Confidence 4566678999999999988773
No 82
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=27.52 E-value=94 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.5
Q ss_pred cEEEEEecchhhHHHHHHHHHHHHH
Q psy6667 56 YIGMVYSGMGPDYRLLVKKARKIAQ 80 (111)
Q Consensus 56 ~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (111)
++++|+|| ..|+..|...+.....
T Consensus 1 ki~va~SG-G~DS~~Ll~~l~~~~~ 24 (182)
T PF01171_consen 1 KILVAVSG-GKDSMALLHLLKELRR 24 (182)
T ss_dssp EEEEE--S-SHHHHHHHHHHHHHHT
T ss_pred CEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 47889999 8999998888876654
No 83
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....
Probab=27.00 E-value=77 Score=21.29 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=28.8
Q ss_pred cccceeEEEccCcEEEEEecchhhHHHHHHH---HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHh
Q psy6667 44 EDCIHKVEPITDYIGMVYSGMGPDYRLLVKK---ARKIAQQYKLVYQENIP-TQQLVQRVAAIMQEY 106 (111)
Q Consensus 44 ~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~---~~~~~~~~~~~~~~~i~-~~~la~~ls~~~~~~ 106 (111)
.....+|-.=+.++.+-++|+.+....-..+ ++.++. +++..|.+.. .....+++..++.++
T Consensus 107 ~~~~t~i~~~T~~ilie~~~~~~~~i~~~~~~~~l~t~~~-~r~~k~~~~~~~~~a~~~~~~ll~~~ 172 (174)
T PF03483_consen 107 GSERTKITENTKNILIEVAGFDPKSIRKSSKKLKLRTDAS-YRYEKGIDPNLLLNALNRATSLLLEI 172 (174)
T ss_dssp EBSTTC--TT--EEEEEEEES-HHHHHHHHHHTT---HHH-HHHHH-S-TTCHHHHHHHHHHHHHHH
T ss_pred CCccceeEcCCCeEEEEEeecCHHHHHHHHHhcCcccHHH-HHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4444677777788999999988864332221 333333 3444444443 445555555555544
No 84
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=25.99 E-value=32 Score=26.68 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=15.8
Q ss_pred EEEEecchhhHHHHHHHHH
Q psy6667 58 GMVYSGMGPDYRLLVKKAR 76 (111)
Q Consensus 58 ~~~~sG~~~D~~~l~~~~~ 76 (111)
.+|+||+.+|.+.+.+...
T Consensus 272 llGlSg~ssD~R~l~~~~~ 290 (396)
T COG0282 272 LLGLSGLSSDMRDLEEAAA 290 (396)
T ss_pred ccccccccchHHHHHHHhc
Confidence 4799999999999976554
No 85
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=25.96 E-value=5.9 Score=31.19 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=55.5
Q ss_pred hhhHHHHHhcCCCEEEEEeCCeEEEEEecc------CCCCcc--cccceeEE---------EccCcEEEEEecchh---h
Q psy6667 8 IEYALAAVEAGAPSVGIKASNGIVLATEKK------QKTILF--EDCIHKVE---------PITDYIGMVYSGMGP---D 67 (111)
Q Consensus 8 ieya~~av~~g~t~vgi~~~dgVvlaad~~------~~~~~~--~~~~~ki~---------~i~~~i~~~~sG~~~---D 67 (111)
++..+.|++.|.+ |++.+|+.+|.+.+-- ....++ ..+++-|| .| ++++++.||=.= +
T Consensus 163 L~pTl~AIkaGK~-VALANKESLV~aG~lI~~~ak~~~~~IlPVDSEHsAIfQ~L~g~~~~~v-~kiiLTASGGpFr~~~ 240 (454)
T PLN02696 163 LKPTVAAIEAGKD-IALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGL-RRIILTASGGAFRDWP 240 (454)
T ss_pred hHHHHHHHHCCCc-EEEecHHHHHhhHHHHHHHHHHcCCeEeecchhhHHHHHHccCCCccCc-cEEEEECCchhccCCC
Confidence 3455778888865 9999999999886421 111222 11112221 12 678999999554 5
Q ss_pred HHHHHHHHHHHHHHH-HHHhCCCCCHHHHH
Q psy6667 68 YRLLVKKARKIAQQY-KLVYQENIPTQQLV 96 (111)
Q Consensus 68 ~~~l~~~~~~~~~~~-~~~~~~~i~~~~la 96 (111)
...|.+..-.+|..| .-..|.+|++++..
T Consensus 241 ~e~l~~vT~~~ALkHP~W~MG~KITIDSAT 270 (454)
T PLN02696 241 VEKLKEVKVADALKHPNWSMGKKITVDSAT 270 (454)
T ss_pred HHHHhCCCHHHHhhCCCCcCCCeeeeehHh
Confidence 667777777777777 66678888877643
No 86
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=25.84 E-value=81 Score=17.48 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=15.2
Q ss_pred HHhcCCCEEEEEeCCeEEEEE
Q psy6667 14 AVEAGAPSVGIKASNGIVLAT 34 (111)
Q Consensus 14 av~~g~t~vgi~~~dgVvlaa 34 (111)
|+.+-+|+|.|.|+|-|-+--
T Consensus 41 aidkqgtiisiac~divkvel 61 (65)
T PF13066_consen 41 AIDKQGTIISIACNDIVKVEL 61 (65)
T ss_pred EeccCCcEEEEEecceeeEEe
Confidence 345778899999988775543
No 87
>KOG0092|consensus
Probab=24.20 E-value=52 Score=23.13 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=51.6
Q ss_pred EEeCCeEEEEEeccCCCCcc---cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhC---------CCCC
Q psy6667 24 IKASNGIVLATEKKQKTILF---EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ---------ENIP 91 (111)
Q Consensus 24 i~~~dgVvlaad~~~~~~~~---~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~---------~~i~ 91 (111)
.++.+.+++.-|-.....+. .+..+==.++.+++.++..|--+|...--+.-..+++.|....| .-+.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence 45566666666643333332 22112224556899999999999999866666778888876654 3457
Q ss_pred HHHHHHHHHHHH
Q psy6667 92 TQQLVQRVAAIM 103 (111)
Q Consensus 92 ~~~la~~ls~~~ 103 (111)
++.+-.-|+..+
T Consensus 155 v~~if~~Ia~~l 166 (200)
T KOG0092|consen 155 VNEIFQAIAEKL 166 (200)
T ss_pred HHHHHHHHHHhc
Confidence 777777666655
No 88
>PRK04158 transcriptional repressor CodY; Validated
Probab=23.32 E-value=2.2e+02 Score=20.87 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy6667 70 LLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQE 105 (111)
Q Consensus 70 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~ 105 (111)
.|.++.|.....-....+.+++...+|..|++.+..
T Consensus 3 ~LL~ktR~in~~lq~~~~~~v~f~~~a~~L~~~l~~ 38 (256)
T PRK04158 3 SLLEKTRKINRLLQKSAGEPVDFNEMAEVLSDVIDC 38 (256)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCC
Confidence 466777777777777779999999999999998754
No 89
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=23.20 E-value=1.5e+02 Score=16.56 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=13.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHH
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAI 102 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~ 102 (111)
|..-....|.||+...+.+.+.+.
T Consensus 7 a~~vL~~~~~pm~~~eI~~~i~~~ 30 (72)
T PF05066_consen 7 AYEVLEEAGRPMTFKEIWEEIQER 30 (72)
T ss_dssp HHHHHHHH-S-EEHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHh
Confidence 334444566788887777776654
No 90
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=23.04 E-value=1.4e+02 Score=17.90 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.7
Q ss_pred ccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q psy6667 53 ITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88 (111)
Q Consensus 53 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 88 (111)
+..++++. ..-+..|...|...+..|+..||.
T Consensus 58 v~sRVims----P~~AKrL~~aL~~~l~~YE~~fG~ 89 (92)
T PF11950_consen 58 VSSRVIMS----PQHAKRLLKALQQNLQKYEQRFGE 89 (92)
T ss_pred eEEEEEeC----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55566665 778889999999999999999985
No 91
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=21.82 E-value=2.2e+02 Score=17.89 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6667 64 MGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAI 102 (111)
Q Consensus 64 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~ 102 (111)
+..+.-.+++++| .|..+++..+++..+++.+..-
T Consensus 39 Ltd~HW~vI~flR----~~y~~~~~~P~~R~l~K~~~~~ 73 (109)
T PF04358_consen 39 LTDEHWEVIRFLR----DYYQEYGVSPAIRMLIKALGED 73 (109)
T ss_dssp --HHHHHHHHHHH----HHHHHHSS---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHhhh
Confidence 5667777777776 4677788999999999888765
No 92
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=21.60 E-value=85 Score=23.65 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=26.5
Q ss_pred cceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHH
Q psy6667 46 CIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL 84 (111)
Q Consensus 46 ~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 84 (111)
+.+||++|+++-.+++||...-...+.-.+.....++++
T Consensus 96 EDPRvt~I~~~y~mtYTa~s~~g~~~~la~t~~f~n~~r 134 (314)
T COG2152 96 EDPRVTKIGGRYYMTYTAYSDKGPRLALAVTKDFLNWER 134 (314)
T ss_pred cCceEEEECCEEEEEEEecCCCCcccchhhhhhhhhhhh
Confidence 458999999999999999754444444444444444433
No 93
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=21.50 E-value=2.6e+02 Score=19.09 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=27.7
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy6667 62 SGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAA 101 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~ 101 (111)
+|..+|...+...+..++..|.. .|-|.-.+.+.+.|..
T Consensus 112 ~g~~~d~~~F~~~V~~qv~~yl~-~glP~Ra~~f~~aL~~ 150 (164)
T PF04315_consen 112 NGDEPDRQAFKQKVHAQVLRYLE-NGLPPRAQRFIDALQA 150 (164)
T ss_pred CCCCccHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHH
Confidence 57789999999999999998873 5655555444444443
No 94
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=21.40 E-value=35 Score=21.27 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhhcc
Q psy6667 91 PTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 91 ~~~~la~~ls~~~~~~t~~ 109 (111)
|++.|++.-...+|+|||+
T Consensus 46 sieklsnkstpflqeftqh 64 (126)
T PF13120_consen 46 SIEKLSNKSTPFLQEFTQH 64 (126)
T ss_pred HHHHhcccCCHHHHHHhcC
Confidence 5677777777789999986
No 95
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=21.22 E-value=2.1e+02 Score=17.37 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=36.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q psy6667 63 GMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 63 G~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t 107 (111)
--.+|++.+.+.++....--+-.--.+-+-+.|+.-+-+.+|.|-
T Consensus 40 eq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQ 84 (95)
T PF08289_consen 40 EQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQ 84 (95)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHH
Confidence 356899999999999988888777777788888888888888664
No 96
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=20.79 E-value=1.1e+02 Score=13.96 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhh
Q psy6667 94 QLVQRVAAIMQEYT 107 (111)
Q Consensus 94 ~la~~ls~~~~~~t 107 (111)
.+.+++.+-+++||
T Consensus 11 dfvKlI~~TV~KF~ 24 (25)
T PF05372_consen 11 DFVKLIIETVKKFT 24 (25)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 45556666666665
No 97
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=20.56 E-value=59 Score=20.86 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=12.8
Q ss_pred CCcchhhhhHHHHHhc
Q psy6667 2 SGKLVQIEYALAAVEA 17 (111)
Q Consensus 2 ~Gri~Qieya~~av~~ 17 (111)
+|..|-+|||..+|+.
T Consensus 61 ~g~~~D~eya~~aVks 76 (118)
T PF10167_consen 61 QGACYDLEYAISAVKS 76 (118)
T ss_pred ccceecHHHHHHHHHH
Confidence 5888889999888753
No 98
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.12 E-value=1.7e+02 Score=15.89 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6667 77 KIAQQYKLVYQENIPTQQLVQRVAAI 102 (111)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~la~~ls~~ 102 (111)
..+...+..+|..+++..+.++|..+
T Consensus 9 ~i~~~I~~~fgv~ys~~~v~~lL~r~ 34 (60)
T PF13592_consen 9 EIAAYIEEEFGVKYSPSGVYRLLKRL 34 (60)
T ss_pred HHHHHHHHHHCCEEcHHHHHHHHHHc
Confidence 34445577889999998888777654
No 99
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=20.04 E-value=1.3e+02 Score=15.77 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-HHHHHHH
Q psy6667 70 LLVKKARKIAQQYKLVYQENIP-TQQLVQR 98 (111)
Q Consensus 70 ~l~~~~~~~~~~~~~~~~~~i~-~~~la~~ 98 (111)
.+.+.++..........+..++ ...+|+.
T Consensus 5 ~~~~~i~~~i~~~~~~~~~~~~~~~~la~~ 34 (66)
T cd07377 5 QIADQLREAILSGELKPGDRLPSERELAEE 34 (66)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Confidence 3445555554444344444444 5555554
Done!