Query psy6667
Match_columns 111
No_of_seqs 109 out of 1019
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:02:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 4.5E-38 1.5E-42 222.5 15.0 110 1-110 12-123 (243)
2 1ryp_D 20S proteasome; multica 100.0 1.5E-37 5.1E-42 219.6 15.2 110 1-110 11-122 (241)
3 1iru_D 20S proteasome; cell cy 100.0 1.3E-37 4.3E-42 221.0 14.5 110 1-110 12-122 (248)
4 1iru_G 20S proteasome; cell cy 100.0 1.5E-37 5E-42 221.4 14.9 110 1-110 16-126 (254)
5 3h4p_A Proteasome subunit alph 100.0 8.2E-38 2.8E-42 223.9 13.3 110 1-110 21-131 (264)
6 3nzj_F Proteasome component C1 100.0 1.7E-37 5.9E-42 224.6 14.8 110 1-110 17-127 (288)
7 1ryp_C 20S proteasome; multica 100.0 3.2E-37 1.1E-41 218.2 15.7 110 1-110 14-125 (244)
8 1yar_A Proteasome alpha subuni 100.0 2.8E-37 9.5E-42 217.2 15.3 110 1-110 17-127 (233)
9 1iru_B 20S proteasome; cell cy 100.0 2.2E-37 7.7E-42 217.7 14.6 110 1-110 14-124 (233)
10 1ryp_F 20S proteasome; multica 100.0 3.5E-37 1.2E-41 216.8 15.4 109 1-110 14-122 (233)
11 1ryp_G 20S proteasome; multica 100.0 3E-37 1E-41 218.6 15.0 110 1-110 13-123 (244)
12 1j2p_A Alpha-ring, proteasome 100.0 4.7E-37 1.6E-41 217.7 15.7 111 1-111 17-128 (246)
13 1ryp_E 20S proteasome; multica 100.0 1.3E-37 4.3E-42 220.0 12.6 111 1-111 9-120 (242)
14 1iru_C 20S proteasome; cell cy 100.0 7.7E-37 2.6E-41 218.4 15.0 110 1-110 14-125 (261)
15 1iru_E 20S proteasome; cell cy 100.0 4.9E-37 1.7E-41 217.0 12.8 111 1-111 17-128 (241)
16 1iru_A 20S proteasome; cell cy 100.0 1.7E-36 5.9E-41 214.7 14.9 110 1-110 18-129 (246)
17 1iru_F 20S proteasome; cell cy 100.0 3.7E-36 1.3E-40 215.2 15.1 109 1-110 15-123 (263)
18 1ryp_B 20S proteasome; multica 100.0 1.8E-35 6.3E-40 210.0 14.4 110 1-110 14-125 (250)
19 1q5q_A Proteasome alpha-type s 100.0 1.1E-29 3.6E-34 181.4 12.1 102 1-108 9-113 (259)
20 3mi0_A Proteasome subunit alph 99.9 4E-27 1.4E-31 167.2 13.3 96 7-108 16-113 (248)
21 1ryp_H 20S proteasome; multica 99.9 7.4E-27 2.5E-31 161.2 9.5 97 12-109 3-101 (205)
22 2jay_A Proteasome; hydrolase; 99.9 6.4E-26 2.2E-30 164.2 11.7 100 8-108 48-149 (291)
23 3nzj_K Proteasome component PR 99.9 6.4E-26 2.2E-30 164.0 11.4 100 10-109 67-168 (287)
24 1q5r_H Proteasome beta-type su 99.9 5.3E-26 1.8E-30 164.9 10.0 98 11-108 58-157 (294)
25 1yar_H Proteasome beta subunit 99.9 3.7E-25 1.2E-29 154.1 11.7 95 13-107 3-99 (217)
26 1iru_M 20S proteasome; cell cy 99.9 8.7E-25 3E-29 151.5 11.5 91 15-105 6-98 (213)
27 1iru_J 20S proteasome; cell cy 99.9 8.9E-25 3E-29 150.7 11.4 93 15-109 5-99 (205)
28 1iru_H 20S proteasome; cell cy 99.9 1.2E-24 4.2E-29 150.0 11.6 90 19-108 1-92 (205)
29 3nzj_H Proteasome component PU 99.9 1.3E-24 4.5E-29 155.3 11.9 97 11-107 22-120 (261)
30 1ryp_J 20S proteasome; multica 99.9 2.2E-24 7.4E-29 148.7 12.0 92 15-109 5-98 (204)
31 1iru_N 20S proteasome; cell cy 99.9 5.3E-25 1.8E-29 153.2 8.5 95 12-106 2-99 (219)
32 1ryp_L 20S proteasome; multica 99.9 2.3E-24 7.9E-29 149.3 11.4 91 19-109 1-93 (212)
33 1ryp_K 20S proteasome; multica 99.9 3.7E-24 1.3E-28 146.8 11.9 91 19-109 2-94 (198)
34 3h4p_a Proteasome subunit beta 99.9 2.3E-24 7.8E-29 150.3 10.8 91 18-108 1-93 (219)
35 1iru_L 20S proteasome; cell cy 99.9 3E-24 1E-28 147.9 11.3 91 19-109 1-93 (204)
36 1ryp_N 20S proteasome; multica 99.9 9.8E-25 3.3E-29 153.3 8.5 95 12-106 2-103 (233)
37 3unf_N Proteasome subunit beta 99.9 7.5E-24 2.6E-28 145.3 11.0 90 19-108 1-92 (199)
38 1ryp_M 20S proteasome; multica 99.9 5.8E-24 2E-28 148.4 10.4 92 15-106 6-100 (222)
39 1g0u_M Proteasome component PR 99.9 1.8E-24 6.1E-29 154.8 7.9 99 8-106 31-136 (266)
40 1j2q_H Proteasome beta subunit 99.9 1.5E-23 5.1E-28 144.2 12.0 89 19-107 1-91 (202)
41 1q5q_H Proteasome beta-type su 99.9 8.2E-24 2.8E-28 148.9 10.5 91 19-109 1-93 (235)
42 3unf_H Proteasome subunit beta 99.9 5.5E-23 1.9E-27 144.8 11.7 89 19-107 1-91 (234)
43 1iru_I 20S proteasome; cell cy 99.9 1E-22 3.5E-27 143.3 12.7 90 19-108 1-92 (234)
44 1ryp_I 20S proteasome; multica 99.9 9.8E-23 3.4E-27 142.3 11.7 89 19-107 1-91 (222)
45 1iru_K 20S proteasome; cell cy 99.9 1E-21 3.5E-26 135.0 12.0 85 19-103 2-88 (201)
46 2z3b_A ATP-dependent protease 99.8 2.7E-20 9.2E-25 126.3 9.3 85 16-109 3-91 (180)
47 1g3k_A ATP-dependent protease 99.8 3.1E-20 1.1E-24 125.2 8.8 82 19-109 1-85 (174)
48 1m4y_A ATP-dependent protease 99.8 8.3E-20 2.9E-24 122.7 9.0 67 19-85 1-70 (171)
49 1b66_A 6-pyruvoyl tetrahydropt 50.7 13 0.00046 23.3 2.9 44 62-105 62-115 (140)
50 3bl2_A V-BCL-2; protein-protei 48.2 25 0.00085 21.5 3.6 48 59-107 25-72 (131)
51 1sau_A Sulfite reductase, desu 38.4 67 0.0023 19.6 5.1 33 64-100 46-78 (115)
52 1dtc_A Acetyl-delta-toxin; NMR 38.3 23 0.00077 15.7 1.8 17 93-109 10-26 (26)
53 3or1_C Sulfite reductase GAMA; 36.9 68 0.0023 19.2 4.8 33 64-100 42-74 (105)
54 2gx5_A GTP-sensing transcripti 36.8 52 0.0018 21.5 4.2 37 69-105 11-47 (170)
55 2zhy_A ATP:COB(I)alamin adenos 33.7 1E+02 0.0035 20.3 5.4 38 69-106 125-162 (183)
56 1wy1_A Hypothetical protein PH 30.8 99 0.0034 20.1 4.8 38 69-106 119-156 (172)
57 2ah6_A BH1595, unknown conserv 30.5 93 0.0032 21.0 4.7 38 69-106 139-176 (208)
58 1yx3_A Hypothetical protein DS 30.3 1E+02 0.0035 19.3 4.9 36 64-103 62-97 (132)
59 1rty_A YVQK protein; all alpha 28.5 1.1E+02 0.0037 20.3 4.7 38 69-106 126-163 (193)
60 1woz_A 177AA long conserved hy 28.3 1.1E+02 0.0038 19.9 4.7 38 69-106 118-156 (177)
61 2g2d_A ATP:cobalamin adenosylt 27.8 1.3E+02 0.0046 19.8 5.4 39 69-107 133-173 (193)
62 1wvt_A Hypothetical protein ST 27.1 97 0.0033 20.2 4.2 38 69-106 116-153 (172)
63 3ke4_A Hypothetical cytosolic 26.1 84 0.0029 21.3 3.9 36 69-106 145-182 (213)
64 2r48_A Phosphotransferase syst 24.4 71 0.0024 19.1 3.0 30 24-55 55-84 (106)
65 1nog_A Conserved hypothetical 24.0 1E+02 0.0034 20.2 3.9 38 69-106 119-156 (177)
66 2g64_A Putative 6-pyruvoyl tet 23.6 82 0.0028 19.5 3.3 44 62-105 62-114 (140)
67 2nt8_A Cobalamin adenosyltrans 23.5 99 0.0034 21.1 3.9 17 90-106 184-200 (223)
68 3s0r_A De novo designed helica 23.5 34 0.0012 15.3 1.0 10 7-16 6-15 (30)
69 2qee_A BH0493 protein; amidohy 23.5 39 0.0013 25.5 1.9 46 61-106 351-409 (437)
70 1y13_A PTPS, 6-pyruvoyl tetrah 23.0 77 0.0026 20.4 3.2 44 62-105 66-148 (181)
71 3ci3_A Cobalamin adenosyltrans 22.8 1.1E+02 0.0036 20.4 3.9 17 90-106 155-171 (194)
72 2r4q_A Phosphotransferase syst 22.6 71 0.0024 19.1 2.7 30 24-55 55-84 (106)
73 2jt1_A PEFI protein; solution 22.6 66 0.0023 17.9 2.4 14 87-100 22-35 (77)
74 3jx9_A Putative phosphoheptose 22.5 80 0.0027 20.4 3.1 25 2-26 87-112 (170)
75 2bf9_A Pancreatic hormone; tur 22.1 79 0.0027 15.2 2.9 19 87-105 9-27 (36)
76 2xgv_A PSIV capsid N-terminal 22.0 76 0.0026 20.2 2.8 33 60-92 58-90 (142)
77 2oba_A Probable 6-pyruvoyl tet 20.6 1.6E+02 0.0055 18.2 4.5 44 62-105 66-115 (138)
78 3rkl_A STIV-A81; 4-helix bundl 20.2 1.1E+02 0.0037 16.9 2.9 45 58-107 19-65 (87)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=4.5e-38 Score=222.54 Aligned_cols=110 Identities=30% Similarity=0.466 Sum_probs=106.8
Q ss_pred CCCcchhhhhHHHHHhc-CCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~-g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||+||+++ |+|+|||+++||||||+|+|.+.++. +++.+|||+|++|++++++|+.+|++.++++++.+
T Consensus 12 p~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~ 91 (243)
T 1ryp_A 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAE 91 (243)
T ss_dssp TTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999997777 88889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+++|+++++++||++.+|++|++++|.||+++
T Consensus 92 ~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~ 123 (243)
T 1ryp_A 92 AAEFRYKYGYDMPCDVLAKRMANLSQIYTQRA 123 (243)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999974
No 2
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.5e-37 Score=219.65 Aligned_cols=110 Identities=37% Similarity=0.572 Sum_probs=106.8
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.+++++ .++.+||++|+++++++++|+.+|++.|.++++.+
T Consensus 11 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 90 (241)
T 1ryp_D 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVE 90 (241)
T ss_dssp TTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 44889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++.|+++++++||++.+|+++++++|.|||++
T Consensus 91 ~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 122 (241)
T 1ryp_D 91 AQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 122 (241)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHTTSST
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999874
No 3
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.3e-37 Score=220.98 Aligned_cols=110 Identities=32% Similarity=0.565 Sum_probs=107.5
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.++++. .++.+||++|++|++++++|+.+|++.|.++++.++
T Consensus 12 p~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 91 (248)
T 1iru_D 12 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVEC 91 (248)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++|+++++++||++.+++++++++|.|||++
T Consensus 92 ~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 122 (248)
T 1iru_D 92 QSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122 (248)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999975
No 4
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.5e-37 Score=221.37 Aligned_cols=110 Identities=32% Similarity=0.549 Sum_probs=107.6
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++|++++++|+.+|++.|.++++.++
T Consensus 16 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 95 (254)
T 1iru_G 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEA 95 (254)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+.|+++++++||++.+++++++++|.|||++
T Consensus 96 ~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 126 (254)
T 1iru_G 96 SNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126 (254)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999875
No 5
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.2e-38 Score=223.94 Aligned_cols=110 Identities=38% Similarity=0.631 Sum_probs=107.4
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++|++++++|+.+|++.|+++++.++
T Consensus 21 p~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~ 100 (264)
T 3h4p_A 21 PEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEA 100 (264)
T ss_dssp SSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHH
T ss_pred CCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+.|++.++.+||++.+|++|++++|.|||++
T Consensus 101 ~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~ 131 (264)
T 3h4p_A 101 QIYRLTYGEEISIEMLAKKICDIKQAYTQHG 131 (264)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHHHHTTSBS
T ss_pred HhhHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999975
No 6
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.7e-37 Score=224.61 Aligned_cols=110 Identities=37% Similarity=0.587 Sum_probs=107.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.+++++ .+..+||++|++|++|+++|+.+|++.|++++|.++
T Consensus 17 P~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~ 96 (288)
T 3nzj_F 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEA 96 (288)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 667799999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++|+++++++||++.+|++|++++|.|||++
T Consensus 97 ~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~ 127 (288)
T 3nzj_F 97 ASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127 (288)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHcCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999974
No 7
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3.2e-37 Score=218.21 Aligned_cols=110 Identities=40% Similarity=0.671 Sum_probs=107.0
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++++++++||+.+|++.+.++++.+
T Consensus 14 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 93 (244)
T 1ryp_C 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIH 93 (244)
T ss_dssp TTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 67789999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+++|+++++++||++.+++++++++|.|||++
T Consensus 94 ~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 125 (244)
T 1ryp_C 94 AQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 125 (244)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999864
No 8
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.8e-37 Score=217.22 Aligned_cols=110 Identities=44% Similarity=0.678 Sum_probs=107.2
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++++++++||+.+|++.+.++++.++
T Consensus 17 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 96 (233)
T 1yar_A 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISA 96 (233)
T ss_dssp TTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHH
T ss_pred cCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++|++++++++|++.+|+++++++|.|||++
T Consensus 97 ~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~ 127 (233)
T 1yar_A 97 QQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127 (233)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTTBT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999999999964
No 9
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.2e-37 Score=217.71 Aligned_cols=110 Identities=81% Similarity=1.191 Sum_probs=106.7
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.+.++. .++.+||++|+++++++++|+.+|++.+.++++.++
T Consensus 14 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 93 (233)
T 1iru_B 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLA 93 (233)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997777 788899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+.|+++++.+++++.+++++++++|.|||++
T Consensus 94 ~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~ 124 (233)
T 1iru_B 94 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124 (233)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTTSB
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999999999974
No 10
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3.5e-37 Score=216.80 Aligned_cols=109 Identities=28% Similarity=0.454 Sum_probs=105.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++++++++||+.+|++.+.++++.+++
T Consensus 14 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~-~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~ 92 (233)
T 1ryp_F 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS-SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCN 92 (233)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB-CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc-cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875 355999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 81 ~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+|+++++++||++.+++++++++|.|||+.
T Consensus 93 ~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 122 (233)
T 1ryp_F 93 YSSLVFNRKLAVERAGHLLCDKAQKNTQSY 122 (233)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999875
No 11
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=3e-37 Score=218.63 Aligned_cols=110 Identities=37% Similarity=0.587 Sum_probs=106.6
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.+++++ .+..+||++|++++++++||+.+|++.+.++++.++
T Consensus 13 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 92 (244)
T 1ryp_G 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEA 92 (244)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 555699999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++|+++++++||++.+++++++++|.|||++
T Consensus 93 ~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 123 (244)
T 1ryp_G 93 ASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123 (244)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999975
No 12
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=4.7e-37 Score=217.71 Aligned_cols=111 Identities=37% Similarity=0.612 Sum_probs=107.8
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|+++++++++|+.+|++.+.++++.++
T Consensus 17 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 96 (246)
T 1j2p_A 17 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEA 96 (246)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
+.|+++++.++|++.+++++++++|.|||++|
T Consensus 97 ~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~ 128 (246)
T 1j2p_A 97 QINRLTYDIPITVKELAKKICDFKQQYTQYGG 128 (246)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999753
No 13
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.3e-37 Score=220.02 Aligned_cols=111 Identities=34% Similarity=0.603 Sum_probs=108.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++++++++||+.+|++.+.++++.++
T Consensus 9 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 88 (242)
T 1ryp_E 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAA 88 (242)
T ss_dssp TTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHH
T ss_pred CCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 888899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
++|++++++++|++.+++++++++|.|||++|
T Consensus 89 ~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~ 120 (242)
T 1ryp_E 89 VTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120 (242)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999854
No 14
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=7.7e-37 Score=218.36 Aligned_cols=110 Identities=36% Similarity=0.578 Sum_probs=106.4
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++|+++++||+.+|++.|+++++.+
T Consensus 14 p~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 93 (261)
T 1iru_C 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLI 93 (261)
T ss_dssp TTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 44579999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++.|+++++++||++.+++++++++|.|||++
T Consensus 94 ~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 125 (261)
T 1iru_C 94 AQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG 125 (261)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999864
No 15
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.9e-37 Score=216.97 Aligned_cols=111 Identities=31% Similarity=0.546 Sum_probs=107.9
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++++++++||..+|++.+.++++.++
T Consensus 17 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 96 (241)
T 1iru_E 17 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVET 96 (241)
T ss_dssp TTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 788899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhhccCC
Q psy6667 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111 (111)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~ 111 (111)
+.|+.++++++|++.+++++++++|.||+++|
T Consensus 97 ~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~ 128 (241)
T 1iru_E 97 QNHWFTYNETMTVESVTQAVSNLALQFGEEDA 128 (241)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999998753
No 16
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.7e-36 Score=214.74 Aligned_cols=110 Identities=37% Similarity=0.572 Sum_probs=106.4
Q ss_pred CCCcchhhhhHHHHHhc-CCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (111)
Q Consensus 1 p~Gri~Qieya~~av~~-g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (111)
|||||+|||||++|+++ |+|+|||+++||||||+|+|.+.++. .++.+||++|+++++++++|+.+|++.|.++++.+
T Consensus 18 p~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 97 (246)
T 1iru_A 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYE 97 (246)
T ss_dssp TTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999997777 78889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
++.|+++++++||++.+++++++++|.|||+.
T Consensus 98 ~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~ 129 (246)
T 1iru_A 98 AANWKYKYGYEIPVDMLCKRIADISQVYTQNA 129 (246)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999864
No 17
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.7e-36 Score=215.17 Aligned_cols=109 Identities=30% Similarity=0.472 Sum_probs=105.1
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (111)
|||||+|||||+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|+++++++++|+.+|++.|.++++.+++
T Consensus 15 P~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~ 93 (263)
T 1iru_F 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA-AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECL 93 (263)
T ss_dssp TTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB-CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc-cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 455899999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 81 ~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
.|+++++++||++.+++++++++|.|||++
T Consensus 94 ~~~~~~~~~i~v~~la~~l~~~l~~~t~~~ 123 (263)
T 1iru_F 94 DSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123 (263)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999865
No 18
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.8e-35 Score=209.97 Aligned_cols=110 Identities=60% Similarity=0.875 Sum_probs=106.3
Q ss_pred CCCcchhhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||||+|||||++|+++|+|+|||+++||||||+|+|.+.++. .++.+||++|++++++++||+.+|++.+.++++.++
T Consensus 14 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 93 (250)
T 1ryp_B 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVA 93 (250)
T ss_dssp TTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987777 888899999999999999999999999999999999
Q ss_pred HH-HHHHhCCCCCHHHHHHHHHHHHHHhhccC
Q psy6667 80 QQ-YKLVYQENIPTQQLVQRVAAIMQEYTQSG 110 (111)
Q Consensus 80 ~~-~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 110 (111)
+. |+..++.+++++.+++.+++++|.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~ 125 (250)
T 1ryp_B 94 HTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG 125 (250)
T ss_dssp HHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSB
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 99 99999999999999999999999999874
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.96 E-value=1.1e-29 Score=181.36 Aligned_cols=102 Identities=18% Similarity=0.285 Sum_probs=95.9
Q ss_pred CCCcch-hhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHH
Q psy6667 1 PSGKLV-QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (111)
Q Consensus 1 p~Gri~-Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (111)
|||++. |||||++|+++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.++++.++
T Consensus 9 Pe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~ 82 (259)
T 1q5q_A 9 AEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHA 82 (259)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHH
Confidence 899995 9999999999999999999999999999998 245589999999999999999999999999999999
Q ss_pred HHHHHHhC-CCCCHHHHHHHHHH-HHHHhhc
Q psy6667 80 QQYKLVYQ-ENIPTQQLVQRVAA-IMQEYTQ 108 (111)
Q Consensus 80 ~~~~~~~~-~~i~~~~la~~ls~-~~~~~t~ 108 (111)
+.|++.++ .+||++.+++++++ +.|.||.
T Consensus 83 ~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~ 113 (259)
T 1q5q_A 83 DMRGYSYDRRDVTGRSLANAYAQTLGTIFTE 113 (259)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc
Confidence 99999998 49999999999999 7788874
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.95 E-value=4e-27 Score=167.21 Aligned_cols=96 Identities=17% Similarity=0.313 Sum_probs=91.3
Q ss_pred hhhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcccccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHh
Q psy6667 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVY 86 (111)
Q Consensus 7 Qieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 86 (111)
++|||+||+++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.+
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~ 89 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAY 89 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999 2355899999999999999999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHH-HHHHHhhc
Q psy6667 87 Q-ENIPTQQLVQRVA-AIMQEYTQ 108 (111)
Q Consensus 87 ~-~~i~~~~la~~ls-~~~~~~t~ 108 (111)
+ .+|+++.|+++++ .+.|.|||
T Consensus 90 ~~~~i~v~~la~~l~~~l~q~yt~ 113 (248)
T 3mi0_A 90 DRRDVTGRQLANVYAQTLGTIFTE 113 (248)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9 9999999999999 88899997
No 21
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.94 E-value=7.4e-27 Score=161.21 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=92.5
Q ss_pred HHHHhcCCCEEEEEeCCeEEEEEeccCCCCc-c-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCC
Q psy6667 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTIL-F-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQEN 89 (111)
Q Consensus 12 ~~av~~g~t~vgi~~~dgVvlaad~~~~~~~-~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 89 (111)
+||+++|+|+|||+++||||||+|+|.+++. . .++.+||++|++|++++++|+.+|++.+.++++.++++|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5789999999999999999999999999884 4 778899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcc
Q psy6667 90 IPTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 90 i~~~~la~~ls~~~~~~t~~ 109 (111)
+|++.+++++++++|.||++
T Consensus 82 ~~v~~la~~l~~~~~~~~~~ 101 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN 101 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999874
No 22
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.93 E-value=6.4e-26 Score=164.22 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=82.0
Q ss_pred hhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHH
Q psy6667 8 IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLV 85 (111)
Q Consensus 8 ieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 85 (111)
+|||++ +++|+|+|||+++||||||+|+|.+++.+ +++.+|||+|+++++++++|..+|++.|.++++.+++.|++.
T Consensus 48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~ 126 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKL 126 (291)
T ss_dssp -----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhh
Confidence 799999 99999999999999999999999998854 778899999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhc
Q psy6667 86 YQENIPTQQLVQRVAAIMQEYTQ 108 (111)
Q Consensus 86 ~~~~i~~~~la~~ls~~~~~~t~ 108 (111)
++.+++++.+++++++++|.+++
T Consensus 127 ~~~~i~v~~la~~la~~l~~~~~ 149 (291)
T 2jay_A 127 EGVPLTFAGKINRLAIMVRGNLA 149 (291)
T ss_dssp HSSCCCHHHHHHHHHHHHHTCHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999876
No 23
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.93 E-value=6.4e-26 Score=163.97 Aligned_cols=100 Identities=13% Similarity=0.214 Sum_probs=87.6
Q ss_pred hHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhC
Q psy6667 10 YALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ 87 (111)
Q Consensus 10 ya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 87 (111)
++..++++|+|+|||+++||||||+|+|.+.+.+ .++.+||++|+++++++++|..+|++.+.++++.+++.|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999998654 78889999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc
Q psy6667 88 ENIPTQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 88 ~~i~~~~la~~ls~~~~~~t~~ 109 (111)
++|+++.+++++++++|.||++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~~ 168 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKGA 168 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999985
No 24
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.93 E-value=5.3e-26 Score=164.86 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=92.4
Q ss_pred HHHHHhcCCCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q psy6667 11 ALAAVEAGAPSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88 (111)
Q Consensus 11 a~~av~~g~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 88 (111)
|+||+++|+|+|||+++||||||+|+|.+++ +. .++.+|||+|+++++++++|+.+|++.|+++++.++++|+++++.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 8899999999999999999999999999985 44 788899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q psy6667 89 NIPTQQLVQRVAAIMQEYTQ 108 (111)
Q Consensus 89 ~i~~~~la~~ls~~~~~~t~ 108 (111)
+|+++.++++|++++|.+|+
T Consensus 138 ~isv~~la~~la~~l~~~~~ 157 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLG 157 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987
No 25
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.93 E-value=3.7e-25 Score=154.08 Aligned_cols=95 Identities=22% Similarity=0.427 Sum_probs=85.4
Q ss_pred HHHhcCCCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCC
Q psy6667 13 AAVEAGAPSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90 (111)
Q Consensus 13 ~av~~g~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 90 (111)
.++++|+|+|||+++||||||+|+|.+++ +. +++.+||++|++++++++||+.+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999986 44 78889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q psy6667 91 PTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 91 ~~~~la~~ls~~~~~~t 107 (111)
|++.+++++++++|.++
T Consensus 83 ~v~~la~~l~~~~~~~r 99 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK 99 (217)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999999875
No 26
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.92 E-value=8.7e-25 Score=151.50 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=86.7
Q ss_pred HhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy6667 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (111)
Q Consensus 15 v~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (111)
+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++++++++||+.+|++.|.++++.+++.|+++++++|++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 46899999999999999999999999887 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy6667 93 QQLVQRVAAIMQE 105 (111)
Q Consensus 93 ~~la~~ls~~~~~ 105 (111)
+.++++|+++++.
T Consensus 86 ~~la~~l~~~~y~ 98 (213)
T 1iru_M 86 GAIAAMLSTILYS 98 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999953
No 27
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.92 E-value=8.9e-25 Score=150.68 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=87.8
Q ss_pred HhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy6667 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (111)
Q Consensus 15 v~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (111)
+.+|+|+|||+++||||||+|+|.+++++ .++.+||++|++|++++++|+.+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 36899999999999999999999999988 5588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy6667 93 QQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 93 ~~la~~ls~~~~~~t~~ 109 (111)
+.+++++++++ ||++
T Consensus 85 ~~la~~l~~~~--y~~r 99 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR 99 (205)
T ss_dssp HHHHHHHHHHH--HTTT
T ss_pred HHHHHHHHHHH--HHhc
Confidence 99999999999 6654
No 28
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.92 E-value=1.2e-24 Score=149.97 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=86.4
Q ss_pred CCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++ +. .++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998 44 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+++++++|.||+
T Consensus 81 ~~l~~~~~~~~~ 92 (205)
T 1iru_H 81 SLFKEMCYRYRE 92 (205)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhcCc
Confidence 999999999986
No 29
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.92 E-value=1.3e-24 Score=155.29 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=84.9
Q ss_pred HHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q psy6667 11 ALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88 (111)
Q Consensus 11 a~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 88 (111)
.+||+++|+|+|||+++||||||+|+|.+++.+ .++.+||++|++|++++++|+.+|++.+.++++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 368999999999999999999999999998765 778899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q psy6667 89 NIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 89 ~i~~~~la~~ls~~~~~~t 107 (111)
+++++.+++++++.++.|.
T Consensus 102 ~~~v~~~a~~l~~~l~~~~ 120 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKYQ 120 (261)
T ss_dssp CCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 30
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.92 E-value=2.2e-24 Score=148.65 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=87.2
Q ss_pred HhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy6667 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (111)
Q Consensus 15 v~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (111)
+.+|+|+|||+++||||||+|+|.+++++ .++.+||++|+ +++++++|+.+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 46899999999999999999999999988 55889999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy6667 93 QQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 93 ~~la~~ls~~~~~~t~~ 109 (111)
+.+++++++++ ||++
T Consensus 84 ~~la~~l~~~~--y~~~ 98 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERR 98 (204)
T ss_dssp HHHHHHHHHHH--HTTT
T ss_pred HHHHHHHHHHH--HHhc
Confidence 99999999999 6665
No 31
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.92 E-value=5.3e-25 Score=153.21 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=89.1
Q ss_pred HHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHH-HhCC
Q psy6667 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL-VYQE 88 (111)
Q Consensus 12 ~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 88 (111)
++|+++|+|+|||+++||||||+|+|.+++.+ +++.+||++|+++++++++|+.+|++.|.++++.+++.|+. +++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36789999999999999999999999987654 78889999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy6667 89 NIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 89 ~i~~~~la~~ls~~~~~~ 106 (111)
+++++.+++++++++|.+
T Consensus 82 ~~~v~~la~~l~~~ly~~ 99 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSR 99 (219)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999764
No 32
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.92 E-value=2.3e-24 Score=149.34 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=87.1
Q ss_pred CCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++ +. .++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++|++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999985 44 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
+++++++|.||++
T Consensus 81 ~~l~~~~~~~~~~ 93 (212)
T 1ryp_L 81 KILSNLVYQYKGA 93 (212)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHhhCCC
Confidence 9999999999985
No 33
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.91 E-value=3.7e-24 Score=146.81 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=87.0
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++++ +++.+||++|++|++++++|+.+|++.+.++++.+++.|++++++++|++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6999999999999999999998877 66889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
+++++++|.+|+.
T Consensus 82 ~~l~~~l~~~~~~ 94 (198)
T 1ryp_K 82 SFVRQELAKSIRS 94 (198)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccc
Confidence 9999999999854
No 34
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=2.3e-24 Score=150.30 Aligned_cols=91 Identities=24% Similarity=0.331 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy6667 18 GAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (111)
Q Consensus 18 g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (111)
|+|+|||+++||||||+|+|.+++.+ .++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++.++|++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999998755 7888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy6667 96 VQRVAAIMQEYTQ 108 (111)
Q Consensus 96 a~~ls~~~~~~t~ 108 (111)
++++++++|.++.
T Consensus 81 a~~l~~~~~~~~~ 93 (219)
T 3h4p_a 81 ATLLSNILHSSRM 93 (219)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998864
No 35
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.91 E-value=3e-24 Score=147.90 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=86.7
Q ss_pred CCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++ +. .++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999986 44 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
+++++++|.||+.
T Consensus 81 ~~l~~~~~~~r~~ 93 (204)
T 1iru_L 81 KLLANMVYQYKGM 93 (204)
T ss_dssp HHHHHHHHTTTTS
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999875
No 36
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.91 E-value=9.8e-25 Score=153.27 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=89.1
Q ss_pred HHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHH-----
Q psy6667 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL----- 84 (111)
Q Consensus 12 ~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 84 (111)
++|+++|+|+|||+++||||||+|+|.+++.+ +++.+||++|++|++++++|+.+|++.|.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 36789999999999999999999999997654 77889999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHh
Q psy6667 85 VYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 85 ~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+++.+|+++.++++++++++.+
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~ 103 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQR 103 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999664
No 37
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.91 E-value=7.5e-24 Score=145.34 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++.+ .++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999998844 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+++++++|.+++
T Consensus 81 ~~l~~~l~~~~~ 92 (199)
T 3unf_N 81 NVVKNISYKYRE 92 (199)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhcCC
Confidence 999999998864
No 38
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.91 E-value=5.8e-24 Score=148.45 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=87.4
Q ss_pred HhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhC-CCCC
Q psy6667 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ-ENIP 91 (111)
Q Consensus 15 v~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 91 (111)
+++|+|+|||+++||||||+|+|.+++++ .++.+||++|+++++++++|+.+|++.|.++++.++++|+++++ ++|+
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 57899999999999999999999999886 77889999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHh
Q psy6667 92 TQQLVQRVAAIMQEY 106 (111)
Q Consensus 92 ~~~la~~ls~~~~~~ 106 (111)
++.+|++++++++..
T Consensus 86 v~~la~~l~~~ly~~ 100 (222)
T 1ryp_M 86 INSAARNIQHLLYGK 100 (222)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998643
No 39
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.91 E-value=1.8e-24 Score=154.80 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=90.3
Q ss_pred hhhHHHHHhcCCCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHH-
Q psy6667 8 IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL- 84 (111)
Q Consensus 8 ieya~~av~~g~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 84 (111)
.+-+++|+++|+|+|||+++||||||+|+|.+.+.+ +++.+||++|+++++++++|+.+|++.|++++|.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 345678889999999999999999999999987654 77889999999999999999999999999999999999998
Q ss_pred ----HhCCCCCHHHHHHHHHHHHHHh
Q psy6667 85 ----VYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 85 ----~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+++.+++++.++++++++++.+
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~ 136 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQR 136 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999664
No 40
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.91 E-value=1.5e-23 Score=144.24 Aligned_cols=89 Identities=20% Similarity=0.366 Sum_probs=84.8
Q ss_pred CCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++ +. +++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++||++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999986 44 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6667 97 QRVAAIMQEYT 107 (111)
Q Consensus 97 ~~ls~~~~~~t 107 (111)
+++++++|.++
T Consensus 81 ~~l~~~~~~~r 91 (202)
T 1j2q_H 81 TLTSNLLNSYR 91 (202)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhC
Confidence 99999999875
No 41
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.90 E-value=8.2e-24 Score=148.86 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=86.6
Q ss_pred CCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++ +. +++.+||++|++++++++||+.+|++.|.++++.+++.|+++++.+||++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999985 45 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy6667 97 QRVAAIMQEYTQS 109 (111)
Q Consensus 97 ~~ls~~~~~~t~~ 109 (111)
++|++++|.+|++
T Consensus 81 ~~l~~~~~~~~~~ 93 (235)
T 1q5q_H 81 NRLASMVRGNLGA 93 (235)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 42
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.89 E-value=5.5e-23 Score=144.81 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=85.4
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++++ .++.+||++|++|++++++|+.+|++.+.++++.++++|++++|++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 6899999999999999999999886 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6667 97 QRVAAIMQEYT 107 (111)
Q Consensus 97 ~~ls~~~~~~t 107 (111)
+++++++|.|+
T Consensus 81 ~~l~~~l~~~~ 91 (234)
T 3unf_H 81 RILRQTLFRYQ 91 (234)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 43
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.89 E-value=1e-22 Score=143.28 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=86.0
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++++ .++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999999887 56779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy6667 97 QRVAAIMQEYTQ 108 (111)
Q Consensus 97 ~~ls~~~~~~t~ 108 (111)
+++++.+|.|+.
T Consensus 81 ~~l~~~l~~~~~ 92 (234)
T 1iru_I 81 RMLKQMLFRYRG 92 (234)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhcCC
Confidence 999999998864
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.89 E-value=9.8e-23 Score=142.28 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCcc--cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++++ .++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++|+++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998886 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6667 97 QRVAAIMQEYT 107 (111)
Q Consensus 97 ~~ls~~~~~~t 107 (111)
+++++.+|.|.
T Consensus 81 ~~l~~~l~~~~ 91 (222)
T 1ryp_I 81 QMLKQHLFKYQ 91 (222)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhcC
Confidence 99999998874
No 45
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.87 E-value=1e-21 Score=134.97 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCEEEEEeCCeEEEEEeccCCCC-cc-cccceeEEEccCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTI-LF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~-~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (111)
+|+|||+++||||||+|+|.+++ +. .++.+||++|++|++++++|+.+|++.+.++++.+++.|++++++++|++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 69999999999999999999986 44 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy6667 97 QRVAAIM 103 (111)
Q Consensus 97 ~~ls~~~ 103 (111)
+++++.+
T Consensus 82 ~~~~~~l 88 (201)
T 1iru_K 82 NFTRRNL 88 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.83 E-value=2.7e-20 Score=126.30 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=72.4
Q ss_pred hcCCCEEEEEeCCeEEEEEeccCCCC-c-c-cccceeEEEc-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy6667 16 EAGAPSVGIKASNGIVLATEKKQKTI-L-F-EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (111)
Q Consensus 16 ~~g~t~vgi~~~dgVvlaad~~~~~~-~-~-~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (111)
.+|+|+|||+++||||||+|+|.+++ + . +++.+||++| ++|++++++|+.+|++.|.++++.+++.|+ |
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 57999999999999999999999874 6 6 8888999999 999999999999999999999999999988 3
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy6667 92 TQQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 92 ~~~la~~ls~~~~~~t~~ 109 (111)
.+.+.++++.|.++++
T Consensus 76 --~~~~~~~~l~~~~~~~ 91 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSD 91 (180)
T ss_dssp --CHHHHHHHHHHHHHHC
T ss_pred --ChHHHHHHHHHHHHhh
Confidence 2333444555555554
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.82 E-value=3.1e-20 Score=125.19 Aligned_cols=82 Identities=9% Similarity=0.103 Sum_probs=71.0
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCc-c-cccceeEEEc-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTIL-F-EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~-~-~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (111)
+|+|||+++||||||+|+|.+++. . +++.+||++| ++|++++++|+.+|++.|.++++.+++.|+. ++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 689999999999999999999874 4 8888999999 9999999999999999999999999999885 33
Q ss_pred HHHHHHHHHHhhcc
Q psy6667 96 VQRVAAIMQEYTQS 109 (111)
Q Consensus 96 a~~ls~~~~~~t~~ 109 (111)
...++.+.+.+|++
T Consensus 72 ~~~~~~l~~~~~~~ 85 (174)
T 1g3k_A 72 LKSAVELAKDWRTD 85 (174)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 44555556666665
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.81 E-value=8.3e-20 Score=122.73 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=62.2
Q ss_pred CCEEEEEeCCeEEEEEeccCCCCc-c-cccceeEEEc-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHH
Q psy6667 19 APSVGIKASNGIVLATEKKQKTIL-F-EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLV 85 (111)
Q Consensus 19 ~t~vgi~~~dgVvlaad~~~~~~~-~-~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 85 (111)
+|+|||+++||||||+|+|.+++. . +++.+||++| ++|++++++|+.+|++.+.++++.+++.|+.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~ 70 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN 70 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999864 4 7888999999 99999999999999999999999999998744
No 49
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=50.69 E-value=13 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=31.6
Q ss_pred ecchhhHHHHHHHHHHHH---HHHHHHh-------CCCCCHHHHHHHHHHHHHH
Q psy6667 62 SGMGPDYRLLVKKARKIA---QQYKLVY-------QENIPTQQLVQRVAAIMQE 105 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~---~~~~~~~-------~~~i~~~~la~~ls~~~~~ 105 (111)
.|+.-|...+.+.++... .+|++.+ +..++.+.+|.+|-+.+..
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~ 115 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQR 115 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHH
Confidence 567778888888887622 3343333 4568999999999998865
No 50
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=48.20 E-value=25 Score=21.46 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=36.8
Q ss_pred EEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q psy6667 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 59 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t 107 (111)
|.-||...|...++...++...+|.-.++..-.|. +.++..++...+|
T Consensus 25 Cvds~vL~DVs~i~tLTqeF~~hYdSVy~~~ygP~-~~nW~~~l~~Lf~ 72 (131)
T 3bl2_A 25 CVDSAVLVDVSKIITLTQEFRRHYDSVYRADYGPA-LKNWKRDLSKLFT 72 (131)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSTTG-GGGHHHHHHHHHH
T ss_pred ccchhhHhhHHHHHHHHHHHHHHHHHHHhhccchH-HHHHHhhHHHHHH
Confidence 46789999999999999999999999999885443 5555555544444
No 51
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=38.45 E-value=67 Score=19.63 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy6667 64 MGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVA 100 (111)
Q Consensus 64 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls 100 (111)
+..|.-.+++++| .|..++|..+++..|++.+.
T Consensus 46 LTe~HW~VI~flR----~~Y~e~~~~P~iR~l~K~~~ 78 (115)
T 1sau_A 46 LTEEHWKIIRYLR----DYFIKYGVAPPVRMLVKHCK 78 (115)
T ss_dssp CCHHHHHHHHHHH----HHHHHHSSCCCHHHHHHHHH
T ss_pred ECHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHH
Confidence 6677778888777 56777999999999999883
No 52
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=38.30 E-value=23 Score=15.69 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy6667 93 QQLVQRVAAIMQEYTQS 109 (111)
Q Consensus 93 ~~la~~ls~~~~~~t~~ 109 (111)
-.+.+++.+-+++||++
T Consensus 10 gdfvKlI~~TV~KFtkk 26 (26)
T 1dtc_A 10 GDLVKWIIDTVNKFTKK 26 (26)
T ss_dssp HHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45667777777777763
No 53
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=36.89 E-value=68 Score=19.21 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy6667 64 MGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVA 100 (111)
Q Consensus 64 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls 100 (111)
+..+.-.+++++|+ |..++|..+++..|++.++
T Consensus 42 LTe~HW~vI~flR~----yY~e~~~~P~iR~l~K~~~ 74 (105)
T 3or1_C 42 GSADHQKIIDFLQD----YYKANGIAPMVRILSKNTG 74 (105)
T ss_dssp CCHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHC
Confidence 45667778887774 6668999999999998764
No 54
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=36.81 E-value=52 Score=21.47 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQE 105 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~ 105 (111)
..|.++.|..-..-....+.+++...+|..|++.+..
T Consensus 11 ~~LL~KtRkIN~lLq~~~~~~v~f~eia~vLs~vL~~ 47 (170)
T 2gx5_A 11 MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDS 47 (170)
T ss_dssp HHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC
Confidence 4677888877777777778999999999999999864
No 55
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=33.71 E-value=1e+02 Score=20.26 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-........+..+-...|+||++++..
T Consensus 125 Rtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFvl 162 (183)
T 2zhy_A 125 RTVCRRAERSIVALGASEPLNAAPRRYVNRLSDLLFVL 162 (183)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 45555555544444333334556677889999998764
No 56
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=30.75 E-value=99 Score=20.09 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-........+..+-...|+||++++..
T Consensus 119 Rtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFvl 156 (172)
T 1wy1_A 119 RTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLL 156 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 45555555444444333334455667789999998764
No 57
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=30.48 E-value=93 Score=20.96 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-...........+-...|+||++++..
T Consensus 139 RTv~RRAER~~v~L~~~~~v~~~~l~YLNRLSD~LFvl 176 (208)
T 2ah6_A 139 RTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAV 176 (208)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 45555555544444333223444556789999998764
No 58
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=30.26 E-value=1e+02 Score=19.29 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6667 64 MGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIM 103 (111)
Q Consensus 64 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 103 (111)
+..|--.+++++| .|..+++..+++..|++.+...+
T Consensus 62 LTe~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 5667777777776 57777999999999999884433
No 59
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=28.51 E-value=1.1e+02 Score=20.35 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-...........+-...|+||++++..
T Consensus 126 Rtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~LFvl 163 (193)
T 1rty_A 126 RTITRRAERRVVALMKSEEIHETVLRYLNRLSDYFFAG 163 (193)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 45555555544443333223444556789999998764
No 60
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=28.29 E-value=1.1e+02 Score=19.92 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLV-YQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~-~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-..... ......+-...|+||++++..
T Consensus 118 Rtv~RRAER~~v~l~~~~~~v~~~~~~yLNRLSD~lFvl 156 (177)
T 1woz_A 118 RSVARRVERNAVKYTKELPEINRMIIVYLNRLSSLLFAM 156 (177)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 34555555444443333 223344556779999998754
No 61
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=27.77 E-value=1.3e+02 Score=19.83 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHhh
Q psy6667 69 RLLVKKARKIAQQYKLVYQ--ENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~--~~i~~~~la~~ls~~~~~~t 107 (111)
+.+++++...+-......| ....+-...|+||++++...
T Consensus 133 Rtv~RRAER~~v~l~~~~g~~v~~~~~~yLNRLSD~lFvla 173 (193)
T 2g2d_A 133 RTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILS 173 (193)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444433 34556677899999997653
No 62
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=27.13 E-value=97 Score=20.15 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-........+..+-...|+||++++..
T Consensus 116 Rtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFvl 153 (172)
T 1wvt_A 116 RAVCRRAERSVVTLLKESKAKEVHAKYLNRLSSLLFVL 153 (172)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34444444444333322223344556778999998764
No 63
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=26.09 E-value=84 Score=21.30 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIP--TQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~--~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-. .....+++ +-...|+||++++..
T Consensus 145 RTV~RRAER~~v~--L~~~~~v~~~~l~YLNRLSD~LFvl 182 (213)
T 3ke4_A 145 RTVVRRAERSIVS--LQKEVKINEVVLKYVNRLSDYLFAI 182 (213)
T ss_dssp HHHHHHHHHHHHH--HHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhhcCCCHHHHHHHhHHHHHHHHH
Confidence 3444444443333 33334454 445688999998754
No 64
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=24.44 E-value=71 Score=19.13 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=19.1
Q ss_pred EEeCCeEEEEEeccCCCCcccccceeEEEccC
Q psy6667 24 IKASNGIVLATEKKQKTILFEDCIHKVEPITD 55 (111)
Q Consensus 24 i~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~ 55 (111)
|.--|.|++|+|.......+ ..+|++.++-
T Consensus 55 I~~Ad~VIiA~d~~v~~~RF--~GK~v~~~~v 84 (106)
T 2r48_A 55 IREADAIIIAADRSVNKDRF--IGKKLLSVGV 84 (106)
T ss_dssp HHHCSEEEEEESSCCCCGGG--TTSBEEEECH
T ss_pred HHhCCEEEEEeCCccCHhHc--CCCeEEEeCH
Confidence 44578899999987654333 2246666543
No 65
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=24.04 E-value=1e+02 Score=20.19 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 69 RLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
+.+++++...+-...........+-...|+||++++..
T Consensus 119 Rtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFvl 156 (177)
T 1nog_A 119 RAVSRRLERRIVAASKLTEINKNVLIYANRLSSILFMH 156 (177)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 34444444433333222122334456678999998754
No 66
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2
Probab=23.56 E-value=82 Score=19.50 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=29.9
Q ss_pred ecchhhHHHHHHHHHHHHH--HHHHHh-------CCCCCHHHHHHHHHHHHHH
Q psy6667 62 SGMGPDYRLLVKKARKIAQ--QYKLVY-------QENIPTQQLVQRVAAIMQE 105 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~~--~~~~~~-------~~~i~~~~la~~ls~~~~~ 105 (111)
.|+.-|...+.+.++.... +|++.+ +..++.|.+|.+|.+.+..
T Consensus 62 ~Gmv~Df~~lk~~~~~i~~~lDH~~Ln~dv~~f~~~~pT~EnlA~~i~~~l~~ 114 (140)
T 2g64_A 62 SGMVYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKS 114 (140)
T ss_dssp TCCSSCHHHHHHHHHHHHHTTTTEEHHHHCGGGGTSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhcCCCcccchhhcccCCCCCCHHHHHHHHHHHHHH
Confidence 5677778888777773222 222222 4578999999999998865
No 67
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=23.51 E-value=99 Score=21.07 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy6667 90 IPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 90 i~~~~la~~ls~~~~~~ 106 (111)
..+-...|+||++++..
T Consensus 184 ~~~l~YLNRLSD~LFvl 200 (223)
T 2nt8_A 184 QDVLIFINRLSDYFFAA 200 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456678999998754
No 68
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=23.46 E-value=34 Score=15.34 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=6.8
Q ss_pred hhhhHHHHHh
Q psy6667 7 QIEYALAAVE 16 (111)
Q Consensus 7 Qieya~~av~ 16 (111)
-+|||+.+.+
T Consensus 6 aleyaqqale 15 (30)
T 3s0r_A 6 ALEYAQQALE 15 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3688877764
No 69
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*
Probab=23.46 E-value=39 Score=25.54 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=31.0
Q ss_pred EecchhhHHHHHHH------HHHHHHH-----HH--HHhCCCCCHHHHHHHHHHHHHHh
Q psy6667 61 YSGMGPDYRLLVKK------ARKIAQQ-----YK--LVYQENIPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 61 ~sG~~~D~~~l~~~------~~~~~~~-----~~--~~~~~~i~~~~la~~ls~~~~~~ 106 (111)
++|+.+|++.+..+ .|....+ |+ ...|..++.+.+-+.+.++.+.+
T Consensus 351 fvGmlTDsRsflsyi~RheyfRRilc~~Lg~~~~~lve~G~~pd~~~l~~~v~~I~y~N 409 (437)
T 2qee_A 351 FIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVADLFSRN 409 (437)
T ss_dssp SBCCCCCCSBTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTHH
T ss_pred cccCccchhHHhccchHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHH
Confidence 67888888877765 3333222 22 66777667888888888887654
No 70
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2
Probab=22.99 E-value=77 Score=20.45 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=32.2
Q ss_pred ecchhhHHHHHHHHHHHHHHH--HHHh-------------------------------------CCCCCHHHHHHHHHHH
Q psy6667 62 SGMGPDYRLLVKKARKIAQQY--KLVY-------------------------------------QENIPTQQLVQRVAAI 102 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~~~~--~~~~-------------------------------------~~~i~~~~la~~ls~~ 102 (111)
.|+.-|...+.+.++.....+ ++.. ...++.|.+|.+|.+.
T Consensus 66 ~GmV~DF~~lK~~ik~i~~~lDH~~L~~~~~d~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~pTaEnlA~~i~~~ 145 (181)
T 1y13_A 66 DGYVIDFSILKEKVKKVCNKLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILNQ 145 (181)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEEEEETTEEEEEETTSCEEEEEGGGEEEESCSSCCHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHhCChhhhCCCCCchhhhhhccccceeeeccCceeccccccEeECCCCCCCHHHHHHHHHHH
Confidence 678889998888888754443 2221 1468999999999998
Q ss_pred HHH
Q psy6667 103 MQE 105 (111)
Q Consensus 103 ~~~ 105 (111)
+..
T Consensus 146 L~~ 148 (181)
T 1y13_A 146 LIE 148 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 71
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=22.83 E-value=1.1e+02 Score=20.36 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy6667 90 IPTQQLVQRVAAIMQEY 106 (111)
Q Consensus 90 i~~~~la~~ls~~~~~~ 106 (111)
..+-...|+||++++..
T Consensus 155 ~~~~~yLNRLSD~LFvl 171 (194)
T 3ci3_A 155 QDVLIFINRLSDYFFAA 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456678999998754
No 72
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=22.64 E-value=71 Score=19.13 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=19.0
Q ss_pred EEeCCeEEEEEeccCCCCcccccceeEEEccC
Q psy6667 24 IKASNGIVLATEKKQKTILFEDCIHKVEPITD 55 (111)
Q Consensus 24 i~~~dgVvlaad~~~~~~~~~~~~~ki~~i~~ 55 (111)
|.--|.|++|+|.......+ ..+|++.++-
T Consensus 55 I~~Ad~VIiA~d~~v~~~RF--~GK~v~~~~v 84 (106)
T 2r4q_A 55 IEDAPAIIVAADKQVEMERF--KGKRVLQVPV 84 (106)
T ss_dssp HHHCSCEEEEESSCCCCGGG--TTSBEEEECH
T ss_pred HHhCCEEEEEeCCccCHhHc--CCCeEEEeCH
Confidence 44568899999987654333 2246666543
No 73
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=22.61 E-value=66 Score=17.91 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHHH
Q psy6667 87 QENIPTQQLVQRVA 100 (111)
Q Consensus 87 ~~~i~~~~la~~ls 100 (111)
|.++++..+|..++
T Consensus 22 g~~psv~EIa~~lg 35 (77)
T 2jt1_A 22 GAPVKTRDIADAAG 35 (77)
T ss_dssp TSCEEHHHHHHHHT
T ss_pred CCCcCHHHHHHHHC
Confidence 88999999988764
No 74
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=22.55 E-value=80 Score=20.42 Aligned_cols=25 Identities=8% Similarity=-0.166 Sum_probs=21.1
Q ss_pred CCcch-hhhhHHHHHhcCCCEEEEEe
Q psy6667 2 SGKLV-QIEYALAAVEAGAPSVGIKA 26 (111)
Q Consensus 2 ~Gri~-Qieya~~av~~g~t~vgi~~ 26 (111)
.||-- -||-|+++-++|-++|+|.+
T Consensus 87 Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 87 DTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 34444 68999999999999999988
No 75
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=22.12 E-value=79 Score=15.21 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy6667 87 QENIPTQQLVQRVAAIMQE 105 (111)
Q Consensus 87 ~~~i~~~~la~~ls~~~~~ 105 (111)
|..-+++.++++.+.+-|.
T Consensus 9 G~dA~~Eela~Y~~~LrhY 27 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQY 27 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4567899999999887664
No 76
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=21.99 E-value=76 Score=20.19 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=28.0
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy6667 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (111)
Q Consensus 60 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (111)
++-|-.++.+.|.+.+.+|+.+|...+-.|+++
T Consensus 58 ~vgghqaamQ~lkd~INEeAaeWdr~HPgP~p~ 90 (142)
T 2xgv_A 58 VVPGLQADKDMLGAYLEERAREWDAQPQQPLPY 90 (142)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTSSCSSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 456888999999999999999998877766665
No 77
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=20.64 E-value=1.6e+02 Score=18.18 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=29.6
Q ss_pred ecchhhHHHHHHHHHHHHHH--HHHHhC----CCCCHHHHHHHHHHHHHH
Q psy6667 62 SGMGPDYRLLVKKARKIAQQ--YKLVYQ----ENIPTQQLVQRVAAIMQE 105 (111)
Q Consensus 62 sG~~~D~~~l~~~~~~~~~~--~~~~~~----~~i~~~~la~~ls~~~~~ 105 (111)
.|+.-|...+.+.++..+.. |++.+. ..++.|.+|.+|.+.+..
T Consensus 66 ~GmV~Df~~lk~~~~~vi~~lDH~~Lndv~~~~~pTaEnlA~~i~~~L~~ 115 (138)
T 2oba_A 66 TGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKP 115 (138)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHTTSBGGGSTTCSSCCHHHHHHHHHHHHGG
T ss_pred CCEEEeHHHHHHHHHHHHHhCCCccchhcCCCCCCCHHHHHHHHHHHHHH
Confidence 46666788877777764432 222222 367999999999988754
No 78
>3rkl_A STIV-A81; 4-helix bundle, hyperthermophilic viral protein, viral prote; 1.70A {Sulfolobus turreted icosahedral virus}
Probab=20.18 E-value=1.1e+02 Score=16.91 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=30.9
Q ss_pred EEEEecchhhHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHhh
Q psy6667 58 GMVYSGMGPDYRLLVKKARKIAQQYKLV--YQENIPTQQLVQRVAAIMQEYT 107 (111)
Q Consensus 58 ~~~~sG~~~D~~~l~~~~~~~~~~~~~~--~~~~i~~~~la~~ls~~~~~~t 107 (111)
-+..|.+.-|...+.+.+-+.+..-+.. +..++..+ +-+++|+|.
T Consensus 19 efvlsnlqediknlaeivyqlaklieklsqyeeevdte-----lynllheya 65 (87)
T 3rkl_A 19 EFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTE-----LYNLLHEYA 65 (87)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCHH-----HHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHH
Confidence 3567889999999999888888776654 44455553 445555554
Done!