RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6667
(111 letters)
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 152 bits (386), Expect = 6e-48
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY + A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 17 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++ + +
Sbjct: 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDA 128
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 148 bits (376), Expect = 1e-46
Identities = 88/112 (78%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL++ +HKVEPIT +IG+
Sbjct: 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSG
Sbjct: 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG 125
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 146 bits (372), Expect = 9e-46
Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L + + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 123
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 146 bits (370), Expect = 1e-45
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK + L K++ + +IG
Sbjct: 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGC 72
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T S
Sbjct: 73 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS 124
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 146 bits (370), Expect = 1e-45
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A+ G SV ++ + V+ T+KK L + + + IT+ IG
Sbjct: 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIG 77
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+
Sbjct: 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE 130
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 145 bits (369), Expect = 2e-45
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAY 124
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 146 bits (371), Expect = 3e-45
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK + L K++ + +IG
Sbjct: 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T S
Sbjct: 77 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS 128
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 144 bits (366), Expect = 4e-45
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYG 123
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 144 bits (366), Expect = 5e-45
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 68
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 145 bits (367), Expect = 5e-45
Identities = 66/113 (58%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
PSGKL QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG
Sbjct: 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQ-YKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
VYSGMGPDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSG
Sbjct: 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGG 126
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 142 bits (360), Expect = 3e-44
Identities = 49/112 (43%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGG 128
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 143 bits (362), Expect = 4e-44
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L K+ + ++IG+
Sbjct: 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH-QKKILHVDNHIGIS 73
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ D RLL R+ + V+ +P +LV + + Q TQ
Sbjct: 74 IAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYG 124
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 141 bits (358), Expect = 7e-44
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGG 126
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 141 bits (358), Expect = 1e-43
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L ++ K+ + + +
Sbjct: 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ G
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGG 126
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 141 bits (358), Expect = 2e-43
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV G ++GI +G+VLA +++ + L + I K+ I D++
Sbjct: 21 PEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R+L+ +AR AQ Y+L Y E I + L +++ I Q YTQ G
Sbjct: 81 ATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGG 132
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 140 bits (355), Expect = 3e-43
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E ++ + ++GM
Sbjct: 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 75
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ D R L AR+ A ++ + NIP + L RVA + YT +
Sbjct: 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSA 127
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 140 bits (354), Expect = 3e-43
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + KV I ++
Sbjct: 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 70
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSG
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGG 123
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 139 bits (352), Expect = 8e-43
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 17 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R+L+ +AR AQ +L Y I ++L +++ Q+YTQ G
Sbjct: 77 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGG 128
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 79.7 bits (196), Expect = 1e-19
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGP 66
+ E A + G V + +G++ E + HKV + D +G G
Sbjct: 16 RSELARKGIARGRSVVVLTFRDGVLFVAENPSTAL------HKVSELYDRLGFAAVGKYN 69
Query: 67 DYRLLVKKARKIAQQYKLVY-QENIPTQQLVQRVAAIM-QEYTQSG 110
++ L + A Y + ++ + L A + +T+
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQP 115
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 78.8 bits (194), Expect = 2e-19
Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 1 PSGKLVQ-IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGM 59
P + + E A + V + + G++ E +++ K+ + D +G
Sbjct: 9 PEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENPSRSL------QKISELYDRVGF 62
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVY-QENIPTQQLVQRVAAIMQEYTQSGS 111
+G ++ L + + A Y + ++ +QL A + +
Sbjct: 63 AAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQA 115
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 68.8 bits (169), Expect = 9e-16
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
G+ +G++L + + +++ + K+ I I +G+ D + + A
Sbjct: 4 AGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKM 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ + L + + + + Y
Sbjct: 64 ELHALSTGREPRVATVTRILRQTLFRYQG 92
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 63.1 bits (154), Expect = 2e-13
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 1 PSGKLVQIEYAL-AAVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYI 57
+ L + + A G VG+K +NG+V+A + + Q I+ + K+ I+ I
Sbjct: 11 RNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKI 70
Query: 58 GMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+G D + + + + L +Q + + +Y
Sbjct: 71 WCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQG 121
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 58.1 bits (141), Expect = 1e-11
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
VG+K +NG+V+A + + Q I+ + K+ I+ I +G D + +
Sbjct: 4 VGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNI 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ + L +Q + + +Y
Sbjct: 64 ELHSLYTSREPRVVSALQMLKQHLFKYQG 92
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 56.5 bits (137), Expect = 3e-11
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
G+ +GIVL + + + ++ + K+ I+ I +G D + +
Sbjct: 4 AGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ + L + + ++ Y
Sbjct: 64 ELHSLSTGRLPRVVTANRMLKQMLFRYRG 92
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 55.7 bits (135), Expect = 7e-11
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
+E G +VGI + +++ATE++ + + K+ I Y GM +G+ D ++L
Sbjct: 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 63
Query: 72 VKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V+ + + Y+L + N+P + + ++ ++ +
Sbjct: 64 VRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMP 102
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 53.8 bits (129), Expect = 5e-10
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 9 EYALAAVEAGAPSVGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMG 65
+ G V + G++LA +++ I D V +Y +G
Sbjct: 56 MESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDV-EAVYVTDEYSAAGIAGTA 114
Query: 66 PDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEY 106
LV+ + Y+ + + R+A++++
Sbjct: 115 GIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGN 155
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 52.1 bits (125), Expect = 2e-09
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
V + G++LA +++ I D KV +Y +G LV+
Sbjct: 4 VALTYKGGVLLAGDRRATQGNLIASRDV-EKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEY 106
+ Y+ + + R+A++++
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVRGN 90
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 47.2 bits (113), Expect = 7e-08
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
VG+ +G+V+ATEK+ I + K+ I D + M +G D + L + +
Sbjct: 4 VGLVCKDGVVMATEKRATMGNFIASKAA-KKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
A Y++ + + + + ++ Y
Sbjct: 63 ANLYEIRRERKPTVRAIATLTSNLLNSYRYFP 94
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 47.8 bits (114), Expect = 7e-08
Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + GI++A + + + + KV I ++ +G D +
Sbjct: 79 LAFRFQGGIIVAVDSRATAGNWVASQTV-KKVIEINPFLLGTMAGGAADCQFWETWLGSQ 137
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ ++L +E I + ++ ++ +Y +G
Sbjct: 138 CRLHELREKERISVAAASKILSNLVYQYKGAG 169
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 46.8 bits (111), Expect = 1e-07
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
V +K G+V+A +++ Q ++ + KV DY +G +
Sbjct: 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ Y+ + + + R+A +++
Sbjct: 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLA 149
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 45.7 bits (109), Expect = 3e-07
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + GI++A + + + + +V I ++ +G D +
Sbjct: 4 LAFRFQGGIIVAVDSRATAGNWVASQTV-KRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ ++L +E I + ++ ++ +Y +G
Sbjct: 63 CRLHELREKERISVAAASKILSNLVYQYKGAG 94
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 44.5 bits (106), Expect = 6e-07
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ K +G+++A + + I + KV I Y+ +G D + +
Sbjct: 4 LAFKFRHGVIVAADSRATAGAYIASQTV-KKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ Y+L +E I + +A ++ +Y G
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYKGMG 94
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 44.5 bits (106), Expect = 7e-07
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+GI+ + ++LA+ K ++L + K ++ + M ++G D + +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSD-DKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
Q Y + + Q + V + + +S
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQELAKSIRSR 95
Score = 43.8 bits (104), Expect = 1e-06
Identities = 6/92 (6%), Positives = 15/92 (16%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ S T + + V T IG+ ++ +
Sbjct: 5 QMVPPSAYDRAITVFSPEGRLYQVEYAR-EAVRRGTTAIGIACKDGVVLAVDRRITSKLV 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ +
Sbjct: 64 KIRSIEKIFQIDDHVAAATSGLVADARVLIDR 95
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 43.4 bits (103), Expect = 2e-06
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ I + ++A++ + +I D K +TD + SG D L K
Sbjct: 13 LAIAGEDFAIVASDTRLSEGFSIHTRDS-PKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 71
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEY 106
+ YK + + T + ++ I+
Sbjct: 72 LKMYKHSNNKAMTTGAIAAMLSTILYSR 99
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 41.8 bits (99), Expect = 6e-06
Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ +K N + +A ++ Q ++ D K+ P+ D + + +G+ D + + ++ +
Sbjct: 12 MAMKGKNCVAIAADRRFGIQAQLVTTDF-QKIFPMGDRLYIGLAGLATDVQTVAQRLKFR 70
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
Y+L I L+ VA ++ E
Sbjct: 71 LNLYELKEGRQIKPYTLMSMVANLLYEKRFGP 102
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 40.7 bits (96), Expect = 2e-05
Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+GI+ + +++A+++ + +D K+ +++ I ++ G D + +K
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDH-DKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
Q YK+ + + + +S
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSR 95
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 40.3 bits (95), Expect = 2e-05
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ ++ G+V+ ++ + ++ K+ P+ I SG D + + A
Sbjct: 4 MAVEFDGGVVVGSDSRVSAGTAVVNRVF-DKLSPLHQRIFCALSGSAADAQAIADMAAYQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEY 106
+ + L +E V I +Y
Sbjct: 63 LELHGLELEEPPLVLAAANVVKNISYKY 90
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 39.6 bits (93), Expect = 5e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+GI + VLA + +I KV D I M +G D LVK+ +
Sbjct: 13 LGIAGEDFAVLAGDTRNITDYSINSRYE-PKVFDCGDNIVMSANGFAADGDALVKRFKNS 71
Query: 79 AQQYKLVYQE-NIPTQQLVQRVAAIMQEYTQSG 110
+ Y + + + + + ++
Sbjct: 72 VKWYHFDHNDKKLSINSAARNIQHLLYGKRFFP 104
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 38.7 bits (91), Expect = 9e-05
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ ++ G+VL + + I K+ PI D I SG D + +
Sbjct: 4 MAVQFDGGVVLGADSRTTTGSYIANRVT-DKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEY 106
+ + E + Y
Sbjct: 63 LGFHSIELNEPPLVHTAASLFKEMCYRY 90
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 38.2 bits (89), Expect = 2e-04
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 18 GAPSVGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKK 74
G + +K NG+++A + + F ++ P+ D + SG D + + +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGV-ERLIPVGDNTVVGISGDISDMQHIERL 99
Query: 75 ARKIAQQYKLVYQ-----ENIPTQQLVQRVAAIMQEY 106
+ + + E + + + +A +M +
Sbjct: 100 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQR 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 5e-04
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 33/105 (31%)
Query: 9 EY-ALAAVEAGAPSV--GIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMG 65
EY ALA++ A S+ ++ +V + + + + + E GM+ +
Sbjct: 1766 EYAALASL-ADVMSIESLVE----VV-----FYRGMTMQVAVPRDELGRSNYGMI--AIN 1813
Query: 66 P----------DYRLLVKKARKIAQQYKLV----YQENIPTQQLV 96
P + +V++ K + LV Y N+ QQ V
Sbjct: 1814 PGRVAASFSQEALQYVVERVGK--RTGWLVEIVNY--NVENQQYV 1854
Score = 25.8 bits (56), Expect = 3.7
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 24/72 (33%)
Query: 63 GMGPDYRLLVKKARKI---AQQYKL---------VYQENIPT-----------QQLVQRV 99
GMG D K A+ + A + + N P +++ +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENY 1688
Query: 100 AAIMQEYTQSGS 111
+A++ E G
Sbjct: 1689 SAMIFETIVDGK 1700
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 36.5 bits (85), Expect = 5e-04
Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ +K NG+++A + + F ++ P+ D + SG D + + + + +
Sbjct: 12 ISMKYDNGVIIAADNLGSYGSLLRFNGV-ERLIPVGDNTVVGISGDISDMQHIERLLKDL 70
Query: 79 AQQYKLVYQ-----ENIPTQQLVQRVAAIMQEY 106
+ E + + + +A +M +
Sbjct: 71 VTENAYDNPLADAEEALEPSYIFEYLATVMYQR 103
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 34.9 bits (81), Expect = 0.002
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
V + + + +A + Q + K+ ++ + +G+ D L + R
Sbjct: 12 VAMTGKDCVAIACDLRLGSQSLGVSNKF-EKIFHY-GHVFLGITGLATDVTTLNEMFRYK 69
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
YKL + I + Q V++ + E
Sbjct: 70 TNLYKLKEERAIEPETFTQLVSSSLYERRFGP 101
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 34.1 bits (79), Expect = 0.004
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + +G++L + + I K+ + D I SG D + + +
Sbjct: 13 MAVTFKDGVILGADSRTTTGAYIANRVT-DKLTRVHDKIWCCRSGSAADTQAIADIVQYH 71
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEY 106
+ Y Y T+ + E
Sbjct: 72 LELYTSQYGTPS-TETAASVFKELCYEN 98
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 32.2 bits (74), Expect = 0.017
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 22 VGIKASNGIVLATEKKQ---KTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+G+K G+V+A + F + ++ + + + SG D++ L + ++
Sbjct: 12 LGVKFEGGVVIAADMLGSYGSLARFRNI-SRIMRVNNSTMLGASGDYADFQYLKQVLGQM 70
Query: 79 AQQYKLVYQENIPT 92
+L+ + +
Sbjct: 71 VIDEELLGDGHSYS 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.18
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 4 KLVQIEYALAAVEAG-APSVGIKAS 27
L +++ +L AP++ IKA+
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
oxidoreductase, DNA replication, allosteric enzyme,
nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Length = 761
Score = 27.6 bits (62), Expect = 0.89
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 50 VEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYT-Q 108
+EP Y+ + + R +V + Y+L+++ +P ++ IMQ++ Q
Sbjct: 635 IEPPRGYV-SIKASKDGILRQVVPDYEHLHDAYELLWE--MPGNDGYLQLVGIMQKFIDQ 691
Query: 109 SGS 111
S S
Sbjct: 692 SIS 694
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.3
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 71 LVKKARK-IAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
+KA+K + + + E + ++ R+A + + Q
Sbjct: 112 WREKAKKDLEEWNQR-QSEQVEKNKINNRIAD--KAFYQQ 148
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG,
structural genomics center for structural genomics; HET:
MSE TRP; 1.35A {Streptococcus pneumoniae}
Length = 295
Score = 26.8 bits (59), Expect = 1.5
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 45 DCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE-NIPTQQLVQRVAAIM 103
+ I + P IG +YS + + V++ + A++ L + +P+ + +M
Sbjct: 124 ELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVM 183
Query: 104 QE 105
Sbjct: 184 TS 185
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 26.5 bits (59), Expect = 1.8
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQS 109
G+ G PD ++ A Y+++Y+ ++ ++ +++ + Q
Sbjct: 217 EGLRRRGFSPDAISALRSA------YRILYKNSLSLEEAKVQLSELAQAGGDG 263
>2qh8_A Uncharacterized protein; conserved domain protein, structural
genomics, PSI-2, MCSG, BIG_563.1, protein structure
initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar
eltor str} PDB: 3lkv_A*
Length = 302
Score = 26.4 bits (58), Expect = 1.8
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 47 IHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE-NIPTQQLVQRVAAIMQE 105
I ++ P IG+VY+ + L++ + A ++ + E VQ + E
Sbjct: 133 IKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE 192
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQE 105
G+ G + ++ A YKL+Y+ ++ +A + +
Sbjct: 200 EGLKRRGFSREAITAIRNA------YKLIYRSGKTLDEVKPEIAELAET 242
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 25.6 bits (57), Expect = 3.2
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQE 105
+GM +G P+ R +K A YK++Y I T++ + + A
Sbjct: 195 VGMKRAGFSPEVRNAIKHA------YKVIYHSGISTRKALDELEASGNL 237
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 24.7 bits (54), Expect = 7.9
Identities = 5/55 (9%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 57 IGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
G+ +G ++ A Y+ ++ + +++ + S
Sbjct: 224 EGLRRNGFTMSEMKSLRAA------YRKIFMSTETVSLSFEERLTELEQDQELYS 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,634,069
Number of extensions: 89625
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 66
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)