RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6667
(111 letters)
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 105 bits (262), Expect = 6e-30
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E ++ + ++GM
Sbjct: 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 75
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+G+ D R L AR+ A ++ + NIP + L RVA + YT
Sbjct: 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 104 bits (260), Expect = 1e-29
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ PD R+L R+ LV+ + ++ + Q+ TQS
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYG 123
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 101 bits (252), Expect = 2e-28
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK + L K++ + +IG
Sbjct: 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGC 72
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T
Sbjct: 73 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 99.8 bits (248), Expect = 5e-28
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E I K++ I DY+
Sbjct: 5 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 64
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ G
Sbjct: 65 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGG 116
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 99.7 bits (248), Expect = 8e-28
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A+ G SV ++ + V+ T+KK L + + + IT+ IG
Sbjct: 17 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIG 76
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+
Sbjct: 77 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA 128
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 98.2 bits (244), Expect = 3e-27
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
P G+L Q+EY + A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 10 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 69
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++ + +
Sbjct: 70 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDA 121
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 97.8 bits (243), Expect = 4e-27
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ G
Sbjct: 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGG 126
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 97.0 bits (241), Expect = 8e-27
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + KV I ++
Sbjct: 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 70
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSG
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGG 123
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 96.7 bits (240), Expect = 1e-26
Identities = 66/112 (58%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
PSGKL QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG
Sbjct: 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQ-QYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
VYSGMGPDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSG
Sbjct: 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG 125
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 96.7 bits (240), Expect = 1e-26
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L + K+ + + +
Sbjct: 13 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 72
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ G
Sbjct: 73 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGG 125
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 96.3 bits (239), Expect = 1e-26
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 68
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
SG+ D R +++ AR A + L Y E+I + L Q V + + + S
Sbjct: 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 95.5 bits (237), Expect = 3e-26
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L K+ + ++IG+
Sbjct: 12 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH-QKKILHVDNHIGIS 70
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
+G+ D RLL R+ + V+ +P +LV + + Q TQ
Sbjct: 71 IAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYG 121
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 93.9 bits (233), Expect = 1e-25
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 14 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
SG+ D R+L+ +AR AQ +L Y I ++L +++ Q+YTQ G
Sbjct: 74 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 124
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 93.6 bits (232), Expect = 1e-25
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAY 124
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 91.7 bits (227), Expect = 6e-25
Identities = 88/111 (79%), Positives = 102/111 (91%), Gaps = 1/111 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL+++ +HKVEPIT +IG+
Sbjct: 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSG
Sbjct: 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 91.6 bits (227), Expect = 9e-25
Identities = 34/112 (30%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L ++ + K+ + D + M
Sbjct: 11 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 70
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS
Sbjct: 71 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 122
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 82.4 bits (203), Expect = 2e-21
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 6/105 (5%)
Query: 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGP 66
+ E A + G V + +G++ E + HKV + D +G G
Sbjct: 8 RSELARKGIARGRSVVVLTFRDGVLFVAENPSTAL------HKVSELYDRLGFAAVGKYN 61
Query: 67 DYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGS 111
++ L + A Y T + + A +
Sbjct: 62 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQ 106
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 58.6 bits (141), Expect = 2e-12
Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
+ G + +K NG+++A + ++L + + ++ P+ D + SG D + +
Sbjct: 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63
Query: 72 VKKARKIAQQYKLVYQENIPTQQLVQRVAAIM---QEYTQSGS 111
+ + + + + L Y +
Sbjct: 64 ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSK 106
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 58.3 bits (140), Expect = 3e-12
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G +GI + VLA + + + KV D I M +G D LVK+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ + Y + + + + A +Q
Sbjct: 69 KNSVKWYHFDHNDKKLS---INSAARNIQHLLYGK 100
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 56.3 bits (135), Expect = 1e-11
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+GI+ + ++LA+ K + + +D K ++ + M ++G D + +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANI 64
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
Q Y + + Q + V + + +S
Sbjct: 65 QLYSIREDYELSPQAVSSFVRQELAKSIRSR 95
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 53.6 bits (128), Expect = 1e-10
Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 21 SVGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARK 77
+VGI + +++ATE++ + I+ ++ K+ I Y GM +G+ D ++LV+ +
Sbjct: 3 TVGITLKDAVIMATERRVTMENFIMHKNG-KKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 78 IAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ Y+L + N+P + + ++ ++ +
Sbjct: 62 ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMP 94
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 53.3 bits (127), Expect = 2e-10
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G + +K N + +A +++ + L K+ P+ D + + +G+ D + + ++
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ Y+L I L+ VA ++ E
Sbjct: 67 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF 99
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 52.8 bits (126), Expect = 2e-10
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ K +G+++A + + I + KV I Y+ +G D + +
Sbjct: 4 LAFKFRHGVIVAADSRATAGAYIASQTV-KKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ Y+L +E I + +A ++ +Y G
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYKGMG 94
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 53.0 bits (126), Expect = 3e-10
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G + I + ++A++ + + + K +TD + SG D L K
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ YK + + T + ++ I+
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRF 101
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 52.6 bits (125), Expect = 3e-10
Identities = 13/91 (14%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+GI+ + +++A+++ + +D K+ +++ I ++ G D + +K
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
Q YK+ + + + +S
Sbjct: 65 QLYKMRNGYELSPTAAANFTRRNLADCLRSR 95
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 50.9 bits (121), Expect = 1e-09
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
VG+K +NG+V+A + + Q I+ + K+ I+ I +G D + +
Sbjct: 4 VGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNI 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ + L +Q + + +Y
Sbjct: 64 ELHSLYTSREPRVVSALQMLKQHLFKYQG 92
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 50.9 bits (121), Expect = 2e-09
Identities = 13/96 (13%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
+ G +G+K G+V+A + ++ I ++ + + + SG D++ L
Sbjct: 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63
Query: 72 VKKARKIAQQYKLVYQ-ENIPTQQLVQRVAAIMQEY 106
+ ++ +L+ + + + + M
Sbjct: 64 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSR 99
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 50.5 bits (120), Expect = 2e-09
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
G+ +GIVL + + + ++ + K+ I+ I +G D + +
Sbjct: 4 AGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ + L + + ++ Y
Sbjct: 64 ELHSLSTGRLPRVVTANRMLKQMLFRYRG 92
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 49.8 bits (118), Expect = 3e-09
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + GI++A + + + + +V I ++ +G D +
Sbjct: 4 LAFRFQGGIIVAVDSRATAGNWVASQTV-KRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ ++L +E I + ++ ++ +Y +G
Sbjct: 63 CRLHELREKERISVAAASKILSNLVYQYKGAG 94
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 49.7 bits (118), Expect = 3e-09
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+ ++ G+VL + + + + K+ PI D I SG D + +
Sbjct: 4 MAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
+ + E + Y +
Sbjct: 64 GFHSIELNEPPLVHTAASLFKEMCYRYRE 92
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 49.9 bits (118), Expect = 4e-09
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
V + G++LA +++ Q ++ + KV +Y +G LV+
Sbjct: 4 VALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVEL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG 110
+ Y+ + + R+A++++ +
Sbjct: 64 EHYEKIEGVPLTFDGKANRLASMVRGNLGAA 94
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 49.0 bits (116), Expect = 6e-09
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 21 SVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VG+ +G+V+ATEK+ + K+ I D + M +G D + L + +
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
A Y++ + + + + ++ Y
Sbjct: 63 ANLYEIRRERKPTVRAIATLTSNLLNSYRY 92
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 48.3 bits (114), Expect = 1e-08
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G V + + + +A + + +++ + K+ ++ + +G+ D L +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQ 108
R YKL + I + Q V++ + E
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRF 99
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 205
Score = 44.7 bits (105), Expect = 2e-07
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 15 VEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLV 72
V GA + + +G++L + + + K+ + D I SG D + +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 73 KKARKIAQQYKLVYQENIP 91
+ + Y Y
Sbjct: 66 DIVQYHLELYTSQYGTPST 84
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 25.9 bits (56), Expect = 1.2
Identities = 8/89 (8%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMV-YSGMGPDYRLLVKKARK 77
++ ++ + + + ++ + KV + + + ++G D L +K
Sbjct: 9 FAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEA 68
Query: 78 IAQQYKLVYQENIPTQQLVQRVAAIMQEY 106
++Y + R ++++
Sbjct: 69 KLEEYNGNLKRAAVELAKEWRSDKVLRKL 97
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 24.2 bits (52), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIH 48
SG + +E A++ +EAGA +G S+GI +A E ++ ++ E H
Sbjct: 180 ASGGIRDLETAISMIEAGADRIG--TSSGISIAEEFLKRHLILEHHHH 225
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 23.3 bits (50), Expect = 5.5
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEY 106
QY+L + T +L ++V + +
Sbjct: 7 GQYELYMYREVDTLELTRQVKEKLAKN 33
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 24.0 bits (51), Expect = 6.4
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 18 GAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYI 57
GAP++ + GI LA ++++ ++ ++ D++
Sbjct: 45 GAPALEAAGAYGIALAA-REREFADVDELKEHLKKAADFL 83
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania
major [TaxId: 5664]}
Length = 374
Score = 23.6 bits (50), Expect = 7.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 18 GAPSVGIKASNGIVLATEKK 37
GAP++ + A+ GI +AT++K
Sbjct: 53 GAPAIAVSAALGIAVATQRK 72
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 23.5 bits (50), Expect = 8.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 18 GAPSVGIKASNGIVLA 33
GAP++G+ A+ G VL
Sbjct: 47 GAPAIGVAAAFGYVLG 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,456
Number of extensions: 15942
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 45
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)