RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6668
(306 letters)
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 102 bits (256), Expect = 3e-26
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
YAH++FN D + G ++FEDF+KGLSIL RG+ +EKL W F LYDIN DG I+K+++ +
Sbjct: 103 YAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLD 162
Query: 150 IVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
I+ ++Y++MG Y Q VE FQ
Sbjct: 163 IMKAIYDMMGKCTYPVLKEDAPRQHVETFFQ 193
Score = 32.9 bits (75), Expect = 0.078
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 92 HYVFNTLDHNKTGFLN---FEDFVKGLSILCRGSEEEKLR---------WIFCLYDINGD 139
++ FN D NK G++ D +K + + L+ F D N D
Sbjct: 141 NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKD 200
Query: 140 GVISKDDLYNIVS 152
GV++ D+
Sbjct: 201 GVVTIDEFIESCQ 213
Score = 30.2 bits (68), Expect = 0.70
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYD 135
F +D NK G + ++F++ ++E + L++
Sbjct: 191 FFQKMDKNKDGVVTIDEFIESC------QKDENIMRSMQLFE 226
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 100 bits (250), Expect = 1e-25
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
+A YVFN D +K G+++F++F+ LS+ RG +KL W F LYD++ +G+IS
Sbjct: 58 FGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLIS 117
Query: 144 KDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
D++ IV ++Y+++G+ D +RV +F
Sbjct: 118 YDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFN 154
Score = 37.1 bits (86), Expect = 0.003
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 28/160 (17%)
Query: 17 SNMINGSELVCRVKYNNTLPDIPFDCKFIAYPFESTRRGSGNGKNITFIQQQKDNNCLAG 76
S +N SE K D +++ F++ + G I F + + +
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY-----IDFKEFICALSVTSR 94
Query: 77 GRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE------------E 124
G + KL + F D + G +++++ ++ + + + E
Sbjct: 95 GELNDKL--------IWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPE 146
Query: 125 EKLRWIFCLYDINGDGVISKDDLYNIVS---SVYELMGTY 161
+++ IF + D N DG ++ ++ ++ + Y
Sbjct: 147 KRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSLY 186
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 99.5 bits (248), Expect = 2e-25
Identities = 33/95 (34%), Positives = 60/95 (63%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
++A +VFN D NK G + F +F++ LS+ RG+ +EKLRW F LYD++ DG I+++
Sbjct: 60 DPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRN 119
Query: 146 DLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
++ +IV ++Y+++G + +RV+ +F
Sbjct: 120 EMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFA 154
Score = 38.3 bits (89), Expect = 0.001
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 28/160 (17%)
Query: 17 SNMINGSELVCRVKYNNTLPDIPFDCKFIAYPFESTRRGSGNGKNITFIQQQKDNNCLAG 76
S ++ + K D F+ F+ + G I F + + + +
Sbjct: 40 SGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDG-----RIEFSEFIQALSVTSR 94
Query: 77 GRCDHKLDIKQIRYAHYVFNTLDHNKTGFLN---FEDFVKGLSILCRGSE---------E 124
G D KL + F D + G++ D V + + + E
Sbjct: 95 GTLDEKLR--------WAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPE 146
Query: 125 EKLRWIFCLYDINGDGVISKDDLYNIVS---SVYELMGTY 161
+++ IF + D N DG ++ + S+ + + Y
Sbjct: 147 KRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLY 186
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 98.7 bits (246), Expect = 3e-25
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
YAHY+FN D +TG + FEDFV LSIL RG+ EKLRW F LYDIN DG I+K+++ +
Sbjct: 57 YAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMD 116
Query: 150 IVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
IV ++Y++MG Y Y Q V+ FQ
Sbjct: 117 IVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQ 147
Score = 36.3 bits (84), Expect = 0.006
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 92 HYVFNTLDHNKTGFLNFEDF---------VKGLSILCRGSE---EEKLRWIFCLYDINGD 139
+ FN D NK G++N E+ + G E + + F D N D
Sbjct: 95 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 154
Query: 140 GVISKDD 146
G+++ D+
Sbjct: 155 GIVTLDE 161
Score = 29.4 bits (66), Expect = 0.97
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYD 135
F +D NK G + ++F++ E++ + L+
Sbjct: 145 FFQKMDKNKDGIVTLDEFLES------XQEDDNIMRSLQLFQ 180
Score = 26.7 bits (59), Expect = 7.7
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVY-----ELMGTYAYRAFDS 168
++ E + GV++++ I + + Y + AFD+
Sbjct: 16 TKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDT 67
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 99.7 bits (248), Expect = 6e-25
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISK 144
YAH++FN D + G ++FEDFV GLSIL RG+ EKL+W F LYDIN DG I+K
Sbjct: 125 GDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITK 184
Query: 145 DDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
+++ I+ S+Y++MG + Y + VE FQ
Sbjct: 185 EEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQ 220
Score = 36.6 bits (84), Expect = 0.006
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 92 HYVFNTLDHNKTGFLN---FEDFVKGLSILCRGSE---------EEKLRWIFCLYDINGD 139
+ FN D NK G + +K + + E + F D N D
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQD 227
Query: 140 GVISKDDLYNIVS 152
GV++ D+
Sbjct: 228 GVVTIDEFLETCQ 240
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 98.9 bits (246), Expect = 7e-25
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
YAHY+FN D +TG + FEDFV LSIL RG+ EKLRW F LYDIN DG I+K+++ +
Sbjct: 90 YAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMD 149
Query: 150 IVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
IV ++Y++MG Y Y Q V+ FQ
Sbjct: 150 IVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQ 180
Score = 37.3 bits (86), Expect = 0.003
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 92 HYVFNTLDHNKTGFLNFEDF---VKGLSILCRGSEEEKLRW---------IFCLYDINGD 139
+ FN D NK G++N E+ VK + + L+ F D N D
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 187
Query: 140 GVISKDDLYNIVS 152
G+++ D+
Sbjct: 188 GIVTLDEFLESCQ 200
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 98.0 bits (244), Expect = 8e-25
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
++A +VF T D N G ++F +F+ LS+ RG E+KL+W F +YD++G+G IS
Sbjct: 58 YGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYIS 117
Query: 144 KDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
K ++ IV ++Y+++ + D +R E +F+
Sbjct: 118 KAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFR 154
Score = 36.0 bits (83), Expect = 0.007
Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 17 SNMINGSELVCRVKYNNTLPDIPFDCKFIAYPFESTRRGSGNGKNITFIQQQKDNNCLAG 76
S ++ E D + + F++ +G+G I F + + +
Sbjct: 40 SGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDA----NGDGT-IDFREFIIALSVTSR 94
Query: 77 GRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE------------E 124
G+ + KL + F+ D + G+++ + ++ + + + E
Sbjct: 95 GKLEQKL--------KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPE 146
Query: 125 EKLRWIFCLYDINGDGVISKDDLYNIVSS 153
++ IF D N DG +S ++ S
Sbjct: 147 KRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
Score = 27.1 bits (60), Expect = 5.9
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVY-----ELMGTYAYRAFDS 168
+E E W G +S ++ I + + + +R FD+
Sbjct: 23 TEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDA 74
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 96.8 bits (241), Expect = 3e-24
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
+ V+NT D NK GF++F +F+ ++++ + E+KL+W F LYD +G+G I K++L +
Sbjct: 58 HIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLD 117
Query: 150 IVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
+ +V L G + + + +F
Sbjct: 118 MFMAVQALNGQ------QTLSPEEFINLVFH 142
Score = 38.2 bits (89), Expect = 0.001
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 82 KLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDG 140
+ ++ + F +G +F L + + + ++ +D N DG
Sbjct: 15 AVPTQETHVWYRTFMMEY--PSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDG 72
Query: 141 VIS 143
+
Sbjct: 73 FVD 75
Score = 28.2 bits (63), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLS 116
VF+ +D N G L E+F+ G++
Sbjct: 140 VFHKIDINNDGELTLEEFINGMA 162
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 93.7 bits (233), Expect = 4e-23
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 89 RYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLY 148
+Y +F D N ++F ++V L+++ RG+ E KL+W F +YD + +G I + +L
Sbjct: 59 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELL 118
Query: 149 NIVSSVYELMGTYAYRA-----FDSGMVAQRVEYLFQ 180
+IV S+Y+L + + V+ +F
Sbjct: 119 DIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFL 155
Score = 43.3 bits (102), Expect = 3e-05
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 82 KLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGV 141
D Q++ + F L+ +G L +F + + + + +F +D NGD
Sbjct: 18 AADAAQLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNT 75
Query: 142 IS 143
I
Sbjct: 76 ID 77
Score = 30.5 bits (69), Expect = 0.46
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSIL-----------------CRGSEEEKLRWIFCLYDIN 137
F D ++ G ++ ++ + + + + EE + IF L D N
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 138 GDGVISKDD 146
GDG +S ++
Sbjct: 161 GDGQLSLNE 169
Score = 28.6 bits (64), Expect = 2.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLS 116
+F +D N G L+ +FV+G
Sbjct: 153 IFLLVDENGDGQLSLNEFVEGAR 175
Score = 27.1 bits (60), Expect = 6.5
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 12/60 (20%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQV 181
+ W + G + + ++ D+ Q VE +F+
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRF------------FKVPDNEEATQYVEAMFRA 67
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 93.0 bits (231), Expect = 4e-23
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
+A+++F D + GF++FE+F+ LS RG+ EEKL W F LYD+N DG I+ D++
Sbjct: 64 FANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLT 123
Query: 150 IVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
IV+SVY++MG+ D RV+ +F+
Sbjct: 124 IVASVYKMMGSMVTLNEDEATPEMRVKKIFK 154
Score = 36.4 bits (84), Expect = 0.006
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 92 HYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE------------EEKLRWIFCLYDINGD 139
+ F D N G++ F++ + ++ + + E +++ IF L D N D
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNED 161
Query: 140 GVISKDDLYNIVS---SVYELMGTY 161
G I+ D+ S+ + Y
Sbjct: 162 GYITLDEFREGSKVDPSIIGALNLY 186
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 93.3 bits (232), Expect = 4e-23
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 89 RYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLY 148
+Y +F T D NK G+++F ++V LS++ +G ++KLRW F LYD++G+G I + +L
Sbjct: 52 KYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELL 111
Query: 149 NIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
NI+ ++ + ++ + +F
Sbjct: 112 NIIKAIRAINR-----CNEAMTAEEFTNMVFD 138
Score = 40.9 bits (96), Expect = 2e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 82 KLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDG 140
+L + + F T +G L +F + + S + + +F +D N DG
Sbjct: 10 ELSATECHQWYKKFMTEC--PSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDG 67
Query: 141 VIS 143
I
Sbjct: 68 YID 70
Score = 29.7 bits (67), Expect = 0.79
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 72 NCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGL----SILCRGSEEEKL 127
A RC+ + ++ + VF+ +D N G L+ E+F++G+ +L + L
Sbjct: 116 AIRAINRCNEAMTAEEF--TNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDL 173
Query: 128 RWIFCLYDINGDGVISKDDL 147
I L +G + ++
Sbjct: 174 THIVKLIQNDGKNPHAPEEA 193
Score = 27.0 bits (60), Expect = 5.9
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 11/60 (18%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQV 181
S E +W G ++ + + L S + VE +F+
Sbjct: 12 SATECHQWYKKFMTECPSGQLTLYEF----KQFFGLK-------NLSPSANKYVEQMFET 60
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 89.9 bits (223), Expect = 1e-21
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGD 139
K + K+ +A VF+ D G L FE+F + LS+ ++K+ + F LYD+
Sbjct: 77 FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQ 136
Query: 140 GVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
G I + ++ +V + G ++ ++ F+
Sbjct: 137 GFIERQEVKQMVVATLAESGM----NLKDTVIEDIIDKTFE 173
Score = 34.8 bits (80), Expect = 0.019
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 92 HYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--------EEKLRWIFCLYDINGDGVIS 143
H+ F D + GF+ ++ + + S E+ + F D DG I
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
Query: 144 KDDLYNIVS 152
K++ ++V
Sbjct: 185 KEEWRSLVL 193
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 86.7 bits (215), Expect = 7e-21
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 90 YAHYVFNTLDHNKT-GFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ + + L+FEDF+ LS+ + + K + F ++D + DG ++++DL
Sbjct: 61 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 120
Query: 148 YNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
+V+ L G + + Q ++ + +
Sbjct: 121 SRLVNC---LTGEGEDTRLSASEMKQLIDNILE 150
Score = 38.6 bits (90), Expect = 0.001
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 91 AHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLR---------WIFCLYDINGDGV 141
+HY F D + G LN ED + ++ L E+ +L I DI+ DG
Sbjct: 100 SHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGT 159
Query: 142 ISKDDLYNIVSSVYELM 158
I+ + +++S +
Sbjct: 160 INLSEFQHVISRSPDFA 176
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 87.7 bits (217), Expect = 7e-21
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
YA +VF + D N G L+F+++V L + G +KL W F LYD++G+G ISK+++
Sbjct: 72 YAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 131
Query: 150 IVSSVYELMGTYAYR--AFDSGMVAQRVEYLFQ 180
IV ++++++ + D +R E +++
Sbjct: 132 IVMAIFKMITPEDVKLLPDDENTPEKRAEKIWK 164
Score = 35.3 bits (81), Expect = 0.013
Identities = 12/112 (10%), Positives = 39/112 (34%), Gaps = 23/112 (20%)
Query: 56 SGNGKNITFIQQQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGL 115
+ +G + F + + G+ + KL + F+ D + G ++ + ++ +
Sbjct: 83 NLDGT-LDFKEYVIALHMTTAGKTNQKL--------EWAFSLYDVDGNGTISKNEVLEIV 133
Query: 116 SILCRGSE--------------EEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ + E++ I+ + N D +++ + +
Sbjct: 134 MAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
Score = 27.6 bits (61), Expect = 3.7
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 109 EDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVY-----ELMGTYAY 163
++ ++ L + + SEEE W G I++ +I + + + + +
Sbjct: 18 KEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVF 77
Query: 164 RAFDS 168
R+FDS
Sbjct: 78 RSFDS 82
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 87.1 bits (216), Expect = 9e-21
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGD 139
+ ++ +A +F+ D + G + F +FV+ L + EK+++ F LYD+
Sbjct: 66 FRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQT 125
Query: 140 GVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
G I +++L +V ++ M+ V+ F
Sbjct: 126 GFIEREELKEMVVALLHESEL----VLSEDMIEVMVDKAFV 162
Score = 35.9 bits (83), Expect = 0.008
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 92 HYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--------EEKLRWIFCLYDINGDGVIS 143
+ F D +TGF+ E+ + + L SE E + F D DG I
Sbjct: 114 KFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 173
Query: 144 KDDLYNIVS 152
D+ + VS
Sbjct: 174 IDEWKDFVS 182
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 79.5 bits (196), Expect = 6e-18
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 90 YAHYVFNTLDHNK-TGFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ + + L+FEDF+ LS+ + + K + F ++D + DG ++++DL
Sbjct: 92 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 151
Query: 148 YNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
+V+ L G + + Q ++ + +
Sbjct: 152 SRLVNC---LTGEGEDTRLSASEMKQLIDNILE 181
Score = 41.8 bits (98), Expect = 1e-04
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 91 AHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKL---------RWIFCLYDINGDGV 141
+HY F D + G LN ED + ++ L E+ +L I DI+ DG
Sbjct: 131 SHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGT 190
Query: 142 ISKDDLYNIVSSVYELM 158
I+ + +++S +
Sbjct: 191 INLSEFQHVISRSPDFA 207
Score = 29.4 bits (66), Expect = 1.2
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 72 NCLAGGRCDHKLDIKQIRY-AHYVFNTLDHNKTGFLNFEDFVKGLS 116
NCL G D +L +++ + D ++ G +N +F +S
Sbjct: 156 NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 69.0 bits (169), Expect = 4e-14
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSIL----------------CRGSEEEKLRWIFCL 133
+ N +NF F++ L+ S KL + F L
Sbjct: 62 LGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRL 121
Query: 134 YDINGDGVISKDDLYNIVSSVYELMGT 160
YD++ D IS+D+L ++ + + +
Sbjct: 122 YDLDKDDKISRDELLQVLRMMVGVNIS 148
Score = 38.2 bits (89), Expect = 0.001
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 82 KLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGV 141
QI + F +LD + G L+ EDF + + + I + G+
Sbjct: 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDR----IINAFFSEGEDQ 77
Query: 142 IS 143
++
Sbjct: 78 VN 79
Score = 35.5 bits (82), Expect = 0.011
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 92 HYVFNTLDHNKTGFLNFEDFVKGLSILC--RGSEEE---KLRWIFCLYDINGDGVISKDD 146
H+ F D +K ++ ++ ++ L ++ S+E+ D +GD IS +
Sbjct: 116 HFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTE 175
Query: 147 LYNIVSS 153
++
Sbjct: 176 FVKVLEK 182
Score = 34.0 bits (78), Expect = 0.039
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 122 SEEEKLRW--IFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDS 168
S + R F D +G +S++D I +G AF S
Sbjct: 24 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFS 72
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 67.8 bits (165), Expect = 2e-13
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 90 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 149
+++ N D +TG + F G+ LC+ E+K R++F + G + L
Sbjct: 133 CLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGL 191
Query: 150 IVSSVYELMG-TYAYRAFDSGMVAQRVEYLFQ 180
++ ++ +F + V FQ
Sbjct: 192 LLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQ 223
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 59.6 bits (145), Expect = 3e-11
Identities = 20/59 (33%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGDGVISKDDLYNIV 151
V + D + G ++F++F++G+S +G +E+KLR+ F +YD++ DG IS +L+ ++
Sbjct: 43 VIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVL 101
Score = 36.1 bits (84), Expect = 0.005
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
D +I+ F LD + +G L+ E+F+ + R + ++D +G+G +
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPEL---QQNPLVQR-VIDIFDTDGNGEVD 56
Score = 31.0 bits (71), Expect = 0.26
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
E ++L F D++ G +S ++ ++
Sbjct: 4 EIKRLGKRFKKLDLDNSGSLSVEEFMSLPE 33
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 57.2 bits (139), Expect = 3e-11
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+F +D N G +++E+ +S E+ L+ IF D +G+G I +++ S
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Query: 154 V 154
+
Sbjct: 65 I 65
Score = 28.3 bits (64), Expect = 0.58
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 127 LRWIFCLYDINGDGVISKDDL 147
+F D+NGDG +S +++
Sbjct: 2 AEALFKEIDVNGDGAVSYEEV 22
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 60.2 bits (146), Expect = 5e-11
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILC-----------------RGSEEEKLRWIFCLYDI 136
+ + + + ++F FV+ L+ S KL + F LYD+
Sbjct: 66 IIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDL 125
Query: 137 NGDGVISKDDLYNIVSS 153
+ DG IS+ ++ ++
Sbjct: 126 DRDGKISRHEMLQVLRL 142
Score = 39.4 bits (92), Expect = 6e-04
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 83 LDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
+ H+ F LD NK G+L+ D I R I + +G +
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDL---QQIGALAVNPLGDR-IIESFFPDGSQRV 78
Query: 143 S 143
Sbjct: 79 D 79
Score = 34.0 bits (78), Expect = 0.035
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 122 SEEEKLRW--IFCLYDINGDGVISKDDLYNI 150
S+ LR F D N G +S+ DL I
Sbjct: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQQI 54
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 50.8 bits (122), Expect = 6e-08
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNI 150
LD N G + + +F+ + E L+ F D + DG ISK D+ ++
Sbjct: 79 LQALDINDRGNITYTEFM-AGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSL 133
Score = 41.9 bits (99), Expect = 6e-05
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
IK I F LD N G L+ + L+ + G ++ + I DIN G I
Sbjct: 37 HIKYINEL---FYKLDTNHNGSLSHREIYTVLASV--GIKKWDINRILQALDINDRGNI 90
Score = 37.7 bits (88), Expect = 0.002
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDLYNIVSSV 154
+ +F D N +G +S ++Y +++SV
Sbjct: 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASV 68
Score = 32.3 bits (74), Expect = 0.11
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDG 140
++ ++ A FN +D ++ G+++ D V + + + + F G
Sbjct: 103 KNIESTFLKAA---FNKIDKDEDGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIKKG 157
Query: 141 VISKDDLYNI 150
+ + + I
Sbjct: 158 IPREHIINKI 167
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 49.6 bits (119), Expect = 2e-07
Identities = 10/70 (14%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
+ + + +D + +G +++ +F+ ++ + ++ + F ++D++ DG I+
Sbjct: 88 NFDLL------LDQIDSDGSGKIDYTEFIA-AALDRKQLSKKLIYCAFRVFDVDNDGEIT 140
Query: 144 KDDLYNIVSS 153
+L +I+ +
Sbjct: 141 TAELAHILYN 150
Score = 38.4 bits (90), Expect = 0.001
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
++ + L+ F + D +G G I+K+ L
Sbjct: 47 NDYDVEKLKSTFLVLDEDGKGYITKEQL 74
Score = 37.6 bits (88), Expect = 0.002
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE-EEKLRWIFCLYDINGDGVI 142
D+++++ F LD + G++ E KGL G + + D +G G I
Sbjct: 50 DVEKLKST---FLVLDEDGKGYITKEQLKKGLEKD--GLKLPYNFDLLLDQIDSDGSGKI 104
Score = 31.8 bits (73), Expect = 0.17
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVK-----GLSILCRGSEEEKLRWIFCLYD 135
+L K I A F D + G + + + +++ + D
Sbjct: 117 KQLSKKLIYCA---FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVD 173
Query: 136 INGDGVIS 143
N DG I
Sbjct: 174 KNNDGKID 181
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 49.7 bits (119), Expect = 2e-07
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
V D N +G L+ E+F++ L + E + F D +GDGV++ DDL
Sbjct: 78 VCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDL 131
Score = 41.2 bits (97), Expect = 2e-04
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
I+ + F LD + + L+ ++F +GL+ L ++ + + +D NG G +
Sbjct: 36 IQGLARF---FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLD 91
Score = 34.2 bits (79), Expect = 0.026
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 117 ILCRGSEE-EKLRWIFCLYDINGDGVISKDDL 147
L RG+ + L F D +G + D+
Sbjct: 28 CLSRGASGIQGLARFFRQLDRDGSRSLDADEF 59
Score = 30.4 bits (69), Expect = 0.46
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLS-------ILCRGSEEEKLRWIFCLYDIN-GDGVISKD 145
F LD + G + +D S +E+E LR +D + DG ++
Sbjct: 114 AFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLA 173
Query: 146 ---DLYNIVSS 153
D Y+ VS+
Sbjct: 174 EFQDYYSGVSA 184
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 49.1 bits (117), Expect = 6e-07
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 99 DHNKTGFLNFEDFVK--------GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNI 150
D N G L + + L ++ F LYD +G+G I +++L +
Sbjct: 157 DSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDAL 216
Query: 151 VSSVYELMG 159
+ + E
Sbjct: 217 LKDLCEKNK 225
Score = 44.9 bits (106), Expect = 1e-05
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSI---------LCRGSEEEKLRWIFCLYDINGDGVISKDD 146
+ G + + L + E+ + YD + G I ++
Sbjct: 65 DQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEE 124
Query: 147 LYNIVSSVYE 156
L N + + E
Sbjct: 125 LKNFLKDLLE 134
Score = 39.9 bits (93), Expect = 5e-04
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 57 GNGKNITFIQ----QQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFV 112
+GK I ++ + N L RC ++ + D + +GF+ E+
Sbjct: 71 DDGK-IGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKT---WRKYDTDHSGFIETEELK 126
Query: 113 KGLSILCRG--------SEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
L L E + L+D N DG + ++ ++
Sbjct: 127 NFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLP 174
Score = 34.8 bits (80), Expect = 0.025
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEE------EKLRWIFCLY 134
+ Q + D + +G+L ++ + L + ++ +++ Y
Sbjct: 11 SLITASQFFEI---WLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQY 67
Query: 135 DINGDGVISKDDLYNIVSSVYELMGTYAYRAFDS 168
DG I +L +++ + + + + S
Sbjct: 68 GQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKS 101
Score = 33.7 bits (77), Expect = 0.061
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKL-----RWIFCLYDINGDGVISKDDL 147
F D + G+++ + L LC +++E + + ++ G + + DL
Sbjct: 196 AFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDL 254
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 48.1 bits (115), Expect = 6e-07
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
++ I ++D ++ G++ + +FV E+L F +D +G G I+
Sbjct: 88 EVDHI------LQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKIT 141
Query: 144 KDDLYNI 150
++L +
Sbjct: 142 NEELGRL 148
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLF 179
+ EE L IF D NGDG + + +L + + G DS + V+++
Sbjct: 35 TLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGD-TVSDLDSSQIEAEVDHIL 93
Query: 180 Q 180
Q
Sbjct: 94 Q 94
Score = 35.7 bits (83), Expect = 0.010
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE-----------EEKLRWIFC 132
+ K++ F LD+N G L+ ++ ++G L + E ++ I
Sbjct: 38 ETKELTQI---FRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQ 94
Query: 133 LYDINGDGVIS 143
D + +G I
Sbjct: 95 SVDFDRNGYIE 105
Score = 28.8 bits (65), Expect = 1.5
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
F D + +G + E+ + ++E + D N DG +
Sbjct: 129 FQQFDSDGSGKITNEELGRLFG--VTEVDDETWHQVLQECDKNNDGEVD 175
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 47.6 bits (114), Expect = 8e-07
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
DI Q+ +D N +G +++ DF+ ++E F +DI+G+G IS
Sbjct: 94 DIHQV------LRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKIS 147
Query: 144 KDDLYNI 150
++L I
Sbjct: 148 VEELKRI 154
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
+I +R F LD + +G L+ ++ + GL + + + D N G I
Sbjct: 55 EINNLRNI---FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQI 110
Score = 36.0 bits (84), Expect = 0.007
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+ E LR IF D++ G +S ++
Sbjct: 52 CDVEINNLRNIFIALDVDNSGTLSSQEI 79
Score = 27.9 bits (63), Expect = 3.0
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 95 FNTLDHNKTGFLNFEDF--VKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
F D + G ++ E+ + G + ++ + + D+NGDG I
Sbjct: 135 FKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFH 187
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 47.0 bits (112), Expect = 1e-06
Identities = 14/76 (18%), Positives = 33/76 (43%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+ + + +++ +D +K G+++ +F L + ++K F D N +
Sbjct: 93 KGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKN 152
Query: 140 GVISKDDLYNIVSSVY 155
G IS+D+ V+
Sbjct: 153 GQISRDEFLVTVNDFL 168
Score = 44.3 bits (105), Expect = 1e-05
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMG 159
K++ D+ GDG IS++D I + ++
Sbjct: 12 HLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAK 48
Score = 39.7 bits (93), Expect = 4e-04
Identities = 9/103 (8%), Positives = 30/103 (29%), Gaps = 23/103 (22%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEE---------EKLRWIFCLYD 135
+++++ +D GF++ ED+ + + ++ ++ +
Sbjct: 13 LRKMKTR---MQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLG 69
Query: 136 INGDGVISKDDLYNIVSSVY-----------ELMGTYAYRAFD 167
+ IS ++ + + Y D
Sbjct: 70 LAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCID 112
Score = 29.7 bits (67), Expect = 0.75
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKL-RWIF 131
FNTLD NK G ++ ++F+ ++ G EE L +
Sbjct: 143 CFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAFY 181
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 47.6 bits (113), Expect = 1e-06
Identities = 12/70 (17%), Positives = 29/70 (41%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
DI + + G +F +F++ +LC + +L +F D +G+ ++
Sbjct: 89 DITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVD 148
Query: 144 KDDLYNIVSS 153
+++ V
Sbjct: 149 EEEFKRAVPK 158
Score = 34.5 bits (79), Expect = 0.029
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVIS 143
+F+ +D + ++ E+F + + L G++ E +F D NG G ++
Sbjct: 135 MFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVT 185
Score = 32.2 bits (73), Expect = 0.15
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGT 160
+++ +F +D N G + D++Y+ V +L
Sbjct: 46 AKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEF 83
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 46.7 bits (112), Expect = 1e-06
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
+I + D + +G +++++F+ L + E+ L F +D +G G I+
Sbjct: 64 EILDL------MQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYIT 117
Query: 144 KDDL 147
D+L
Sbjct: 118 PDEL 121
Score = 37.1 bits (87), Expect = 0.002
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
SEEE L+ +F + D + G I+ ++L
Sbjct: 22 SEEEIAGLKEMFNMIDADKSGQITFEEL 49
Score = 34.4 bits (80), Expect = 0.019
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
+I ++ FN +D +K+G + FE+ GL + +E ++ + D++ G I
Sbjct: 25 EIAGLKEM---FNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTI 80
Score = 30.2 bits (69), Expect = 0.55
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
F D + +G++ ++ + G E+ ++ + D + DG I
Sbjct: 105 FTYFDKDGSGYITPDELQQACEEF--GVEDVRIEELMRDVDQDNDGRID 151
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 45.6 bits (109), Expect = 2e-06
Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCR---GSEEEKLRWIFCLYDINGDGVISKDDLYNI 150
F ++D + G ++ +F K + ++ L+ ++ L D++GDG ++K+++ +
Sbjct: 42 FKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSF 100
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
+F +D N G +++E+ +S E+ L+ IF D +G+G I
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEID 54
Score = 32.1 bits (74), Expect = 0.075
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 127 LRWIFCLYDINGDGVISKDDL 147
+F D+NGDG +S +++
Sbjct: 2 AEALFKEIDVNGDGAVSYEEV 22
Score = 28.3 bits (64), Expect = 1.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
+ +D + G L E+ ++ + EK+ D NGDG I+
Sbjct: 81 YKLMDVDGDGKLTKEE----VTSFFKKHGIEKVAEQVMKADANGDGYIT 125
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 46.3 bits (110), Expect = 2e-06
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 89 RYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEK--------LRWIFCLYDINGDG 140
Y+ G L E F++ L E ++ I + D N DG
Sbjct: 58 GLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADG 117
Query: 141 VISKDDL 147
I+ D+
Sbjct: 118 QINADEF 124
Score = 46.3 bits (110), Expect = 2e-06
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGT 160
++L+ F +D +G+G + + D + E G
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGK 42
Score = 42.8 bits (101), Expect = 3e-05
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+ + + D N G +N ++F L+ L G + + F D NG+
Sbjct: 93 EASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL--GMSKAEAAEAFNQVDTNGN 150
Query: 140 GVISKD 145
G +S D
Sbjct: 151 GELSLD 156
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 15/75 (20%)
Query: 87 QIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCR-------GSEEEKLRWIFCLY----- 134
F+ D + G L DF K + +E + L+ F
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLA 64
Query: 135 ---DINGDGVISKDD 146
+ DG ++++
Sbjct: 65 KEAGVGSDGSLTEEQ 79
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 46.3 bits (110), Expect = 2e-06
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMG 159
E ++ F +D +G+G I + D ++ G
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFG 38
Score = 44.3 bits (105), Expect = 9e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEK-------LRWIFCLYDINGDGVISKDDL 147
D + + E+FV G R + L + D +GDG ++ D
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+ + H D + G + D + L+ G E+ R D +GD
Sbjct: 89 PDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAF--GVPEDLARQAAAALDTDGD 146
Query: 140 GVISKD 145
G + +
Sbjct: 147 GKVGET 152
Score = 35.5 bits (82), Expect = 0.008
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 23/97 (23%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILC---------------RGSEEEKLRWIFCLYDING 138
F T D + G ++ DF + G E + + + D +G
Sbjct: 9 RFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDG 68
Query: 139 DGVISKDDLYNIVSSVY--------ELMGTYAYRAFD 167
D I++++ E+ + + A
Sbjct: 69 DQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALG 105
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 47.8 bits (114), Expect = 2e-06
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 56 SGNGKNITF------IQQQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFE 109
+G+G+ + + + ++ I D ++ G++++
Sbjct: 358 NGDGQ-LDRQELIDGYSKLSGEEVAVFDLPQIESEVDAI------LGAADFDRNGYIDYS 410
Query: 110 DFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+FV ++KL F +D +G+G IS D+L
Sbjct: 411 EFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 448
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 122 SEEE--KLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLF 179
S+EE +L IF D NGDG + + +L Y + FD + V+ +
Sbjct: 341 SQEETKELTDIFRHIDKNGDGQLDRQELI----DGYSKLSGEEVAVFDLPQIESEVDAIL 396
Query: 180 Q 180
Sbjct: 397 G 397
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILC--------RGSEEEKLRWIFCLYDIN 137
++ + +F +D N G L+ ++ + G S L E ++ I D +
Sbjct: 343 EETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD 402
Query: 138 GDGVI 142
+G I
Sbjct: 403 RNGYI 407
Score = 33.5 bits (77), Expect = 0.090
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
F D + G ++ ++ + E + + + D N DG + ++
Sbjct: 432 FQKFDQDGNGKISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVDFEE 481
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 47.8 bits (114), Expect = 2e-06
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 60 KNITFIQQQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILC 119
++ N+ + + I + LD + +G + + +F+
Sbjct: 358 HEFMRLKGVDSNSLIQNEGSTIEDQIDSL------MPLLDMDGSGSIEYSEFIASAIDRT 411
Query: 120 RGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
E++ F ++D +G G IS +L+ + S
Sbjct: 412 ILLSRERMERAFKMFDKDGSGKISTKELFKLFS 444
Score = 37.0 bits (86), Expect = 0.006
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDG 140
+ + F D + +G ++ ++ K S + E+L I D N DG
Sbjct: 409 DRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDG 468
Query: 141 VISKDD 146
+ ++
Sbjct: 469 EVDFNE 474
Score = 36.2 bits (84), Expect = 0.010
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--------------EEK 126
+ + + +F LD N G L+ ++ V+G R E++
Sbjct: 323 KLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQ 382
Query: 127 LRWIFCLYDINGDGVI 142
+ + L D++G G I
Sbjct: 383 IDSLMPLLDMDGSGSI 398
Score = 35.0 bits (81), Expect = 0.023
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSG--MVAQRVEYLFQ 180
E ++L IF D N DG++ +D+L L G + + + +++ L
Sbjct: 329 ETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMP 388
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 45.8 bits (108), Expect = 3e-06
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 90 YAHYVFNTLD---HNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
+A +F++L L ++ L + +LR F + D N DG ++ ++
Sbjct: 60 FAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEE 119
Query: 147 LYNIVSSV 154
+ I++
Sbjct: 120 VKEIIALS 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 3e-06
Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 90/214 (42%)
Query: 117 ILCR--GSEEEKLRWIFCLYDINGDGVI---------SKDDLYNIVSSVYELMGTYAYRA 165
+ + G +LR + G++ S + + V ++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------- 303
Query: 166 FDSGMVAQRVEYLFQVSTKGFEMSILCSISIPRSPYSLVPEGGEGAPHLNTPLFS---LP 222
F G+ + + S+P S E EG P +P+ S L
Sbjct: 304 FFIGVRCYEA---YPNT------------SLPPSILEDSLENNEGVP---SPMLSISNLT 345
Query: 223 ----------FSSSVPEGQ-------------------SSLQA----IRPI-------QS 242
+S +P G+ SL +R QS
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 243 SVPGLKAIRPPAKSMPDLKPLPLRVSEPESNSYH 276
+P + R S + LP V+ P +H
Sbjct: 406 RIPFSE--RKLKFSN---RFLP--VASP----FH 428
Score = 31.2 bits (70), Expect = 0.48
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 104 GFLNFEDFVKGLSILCRGS-------EEEKLRWIFCLYDINGDGV---ISKDDLYNIVSS 153
++ E V+ + RG +E R + + IN V S++ L +V
Sbjct: 1775 DVMSIESLVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 154 VYELMG 159
V + G
Sbjct: 1833 VGKRTG 1838
Score = 28.5 bits (63), Expect = 4.0
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 33/122 (27%)
Query: 189 SILCSISIPRSPYSLVPEGGEGAPHLNTPLFSLPFSSSVPEGQSSL-QAIRPIQSSVPGL 247
S+ + +P + + + A L F+ +PE P ++ L
Sbjct: 15 SLEHVLLVPTASFFI-------ASQLQE-----QFNKILPEPTEGFAADDEP--TTPAEL 60
Query: 248 KA---------IRP-PAKSMPDLKPLPLRVSEPESNSYHGNGTSGPAVVTAAKVTLLADS 297
+ P + L L ++E E+ GN + A LL ++
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGND------IHALAAKLLQEN 112
Query: 298 QT 299
T
Sbjct: 113 DT 114
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 45.2 bits (108), Expect = 3e-06
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ D + ++DF G IL R +E ++ F L+D + G IS +L
Sbjct: 66 DEYDSEGRHLMKYDDFYIVMGEKILKRDPLDE-IKRAFQLFDDDHTGKISIKNL 118
Score = 34.1 bits (79), Expect = 0.026
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
EE+K + F L+D+N DG + +L
Sbjct: 18 LEEQKQEIYEAFSLFDMNNDGFLDYHEL 45
Score = 31.4 bits (72), Expect = 0.21
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+I+ A F D + TG ++ ++ + L +E+LR + +D++GDG I+++
Sbjct: 96 DEIKRA---FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINEN 152
Query: 146 DLYNIVSS 153
+ I +
Sbjct: 153 EFIAICTD 160
Score = 29.4 bits (67), Expect = 0.73
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--EEKLRWIFCLYDINGDGVI 142
++I A F+ D N GFL++ + + L G E + ++ + YD G ++
Sbjct: 22 KQEIYEA---FSLFDMNNDGFLDYHELKVAMKAL--GFELPKREILDLIDEYDSEGRHLM 76
Query: 143 SKDDLYNIVSSVY-------ELMGTYAYRAFD 167
DD Y ++ E+ A++ FD
Sbjct: 77 KYDDFYIVMGEKILKRDPLDEIK--RAFQLFD 106
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 46.6 bits (110), Expect = 3e-06
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSI------------LCRGSEEEKLRWIFCLYDINGDGV 141
+ D NK G L+ D + L++ + + IF YD++ G
Sbjct: 153 MMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGA 212
Query: 142 ISKDDLYNIVSSVYELMG 159
+ ++ V + EL+
Sbjct: 213 LEGPEVDGFVKDMMELVR 230
Score = 43.5 bits (102), Expect = 3e-05
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 57 GNGKNITF-----IQQQKDNNCLAGGRCDHKLD-IKQIRYAHYVFNTLDHNKTGFLNFED 110
+G+ + + ++ N L R + LD + + D + +G+++ +
Sbjct: 70 FDGR-LQIEELANMILPQEENFLLIFRREAPLDNSVEFMKI---WRKYDADSSGYISAAE 125
Query: 111 FVKGLSILCRGSE--------EEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYA 162
L L + +E + ++D N DG + +DL I++ + +
Sbjct: 126 LKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFK 185
Query: 163 YRAFDSGMVAQRVEYLFQV 181
A + E +F
Sbjct: 186 MDASSQVERKRDFEKIFAH 204
Score = 40.4 bits (94), Expect = 3e-04
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGS-----------EEEKLRWIFCLYDINGDGVI 142
+ D G L E+ + + I+ YD + G I
Sbjct: 62 FMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYI 121
Query: 143 SKDDLYNIVSSVYELMGT 160
S +L N + ++
Sbjct: 122 SAAELKNFLKDLFLQHKK 139
Score = 38.9 bits (90), Expect = 0.001
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 68 QKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCR------- 120
N L + D +++ R +F D ++TG L + + +
Sbjct: 175 ALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSIS 234
Query: 121 -GSEEEKLRWIFCLYDINGDGVISKDDL 147
G ++ + D+N DG I K +L
Sbjct: 235 GGDLDKFRECLLTHCDMNKDGKIQKSEL 262
Score = 34.3 bits (78), Expect = 0.041
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFE---DFVKGLSILCRGSE-------EEKLRWI 130
LD + D + G++ + DF + + + + ++ +
Sbjct: 6 ANLDAAGFLQI---WQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSF 62
Query: 131 FCLYDINGDGVISKDDLYNIVSSVYE 156
YD DG + ++L N++ E
Sbjct: 63 MSAYDATFDGRLQIEELANMILPQEE 88
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 47.0 bits (112), Expect = 4e-06
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 56 SGNGKNITF------IQQQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFE 109
+G+G+ + ++ D ++ V + +D +K G++ +
Sbjct: 347 NGDGQ-LDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQ---VLDAVDFDKNGYIEYS 402
Query: 110 DFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+FV E+L F ++D + G IS +L
Sbjct: 403 EFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTEL 440
Score = 37.0 bits (86), Expect = 0.007
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 122 SEEE--KLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLF 179
S++E +L IF D NGDG + + +L + + G A D+ V V+ +
Sbjct: 330 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDA-SMLDASAVEHEVDQVL 388
Query: 180 Q 180
Sbjct: 389 D 389
Score = 36.6 bits (85), Expect = 0.008
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE-----------EEKLRW 129
+ + +F+ +D N G L+ + ++G L R E ++
Sbjct: 327 KLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQ 386
Query: 130 IFCLYDINGDGVI 142
+ D + +G I
Sbjct: 387 VLDAVDFDKNGYI 399
Score = 33.1 bits (76), Expect = 0.093
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
F D + +G ++ + + E + + D N DG + D+
Sbjct: 423 AFRMFDSDNSGKISSTELATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFDE 473
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 45.7 bits (109), Expect = 4e-06
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ D +K+G +++ +F+ L + EE L F +D +G G I+ D++
Sbjct: 53 DAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEI 104
Score = 36.4 bits (85), Expect = 0.005
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
SEEE L+ +F + D + G I+ D+L
Sbjct: 5 SEEEIGGLKELFKMIDTDNSGTITFDEL 32
Score = 34.1 bits (79), Expect = 0.030
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 99 DHNKTGFLNFEDFVKGLS--ILCRGSEEEKLRWI------FCLYDINGDGVIS 143
D + G +++ +F + G +R L D + VI
Sbjct: 126 DQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIE 178
Score = 33.3 bits (77), Expect = 0.055
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
I ++ F +D + +G + F++ GL + E +++ + DI+ G I
Sbjct: 9 IGGLKEL---FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63
Score = 29.9 bits (68), Expect = 0.72
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
F+ D + +G++ ++ + G ++ + + D + DG I +
Sbjct: 88 FSYFDKDGSGYITLDEIQQACKDF--GLDDIHIDDMIKEIDQDNDGQIDYGE 137
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 44.4 bits (106), Expect = 5e-06
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ +D TG +NF DF+ + + ++EE + F L+D + G IS +L
Sbjct: 49 SEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEE-ILKAFKLFDDDETGKISFKNL 101
Score = 34.8 bits (81), Expect = 0.010
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+EE+K +R F L+D +G G I +L
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKEL 28
Score = 30.1 bits (69), Expect = 0.47
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
F D ++TG ++F++ + L +E+L+ + D +GDG +S+ + I+
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 45.2 bits (107), Expect = 5e-06
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEK---------LRWIFCLYDINGDGVISKD 145
D N+ + E+++K + + E+ + + ++F + D +GD +I K
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Query: 146 DL 147
+
Sbjct: 130 EY 131
Score = 43.7 bits (103), Expect = 2e-05
Identities = 6/59 (10%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 87 QIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+Y +++F+ D + ++ ++ G + F G +++++
Sbjct: 107 LTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSY--GIPKSDCDAAFDTLSDGGKTMVTRE 163
Score = 37.9 bits (88), Expect = 0.002
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 122 SEEE--KLRWIF-CLYDINGDGVISKDDLYNIVSSVYELMGT 160
S+ + K+ +F YD N DGVI DD + + L
Sbjct: 7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSW 48
Score = 36.7 bits (85), Expect = 0.003
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 81 HKLDIKQIRYAHYVFNTL-DHNKTGFLNFEDFVKGLSILCR------GSEEEK------- 126
H+L Q VFNT D N G + ++DF + +C ++
Sbjct: 4 HQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLK 63
Query: 127 --LRWIFCLYDINGDGVISKDD 146
+ D N D ++K++
Sbjct: 64 LIWDGLRKYADENEDEQVTKEE 85
Score = 26.7 bits (59), Expect = 8.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 94 VFNTLDHNKTGFLNFEDFVK 113
F+TL + E F +
Sbjct: 148 AFDTLSDGGKTMVTREIFAR 167
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 46.2 bits (110), Expect = 7e-06
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
++ I +D +K G++ + +F+ EE+LR F L+D + G I+
Sbjct: 400 EVDNI------LKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKIT 453
Query: 144 KDDL 147
K++L
Sbjct: 454 KEEL 457
Score = 38.9 bits (91), Expect = 0.001
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--------EEKLRWIFC 132
+++ + +F LD N G L+ ++ ++G ++L EE++ I
Sbjct: 347 KLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILK 406
Query: 133 LYDINGDGVI 142
D + +G I
Sbjct: 407 EVDFDKNGYI 416
Score = 37.8 bits (88), Expect = 0.004
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
E ++L IF D NGDG + K +L Y ++ + + V + V+ + +
Sbjct: 353 ERKELTDIFKKLDKNGDGQLDKKEL----IEGYNVLRNFKNELGELKNVEEEVDNILK 406
Score = 32.8 bits (75), Expect = 0.12
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDG 140
K + FN D +K+G + E+ + E+ + D N D
Sbjct: 427 DKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGL--TSISEKTWNDVLGEADQNKDN 484
Query: 141 VIS 143
+I
Sbjct: 485 MID 487
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 44.1 bits (105), Expect = 7e-06
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 99 DHNKTGFLNFEDFVKGLSILCR----GSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSV 154
D K+ ++FE F+ L + + G+ E+ F ++D G+G + +L ++++++
Sbjct: 58 DELKSRRVDFETFLPMLQAVAKNRGQGTYED-YLEGFRVFDKEGNGKVMGAELRHVLTTL 116
Query: 155 YELM 158
E M
Sbjct: 117 GEKM 120
Score = 34.1 bits (79), Expect = 0.023
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
++++ + F L+D GDG I
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQC 32
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSV 154
F D G + + L+ L EE++ + + +G I+ + + SV
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKHILSV 151
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 44.5 bits (105), Expect = 8e-06
Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 72 NCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIF 131
+A + L ++F +D + G ++ E+F + + ++
Sbjct: 88 KTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNF--QLQCADVPAVY 145
Query: 132 CLYDINGDGVISKDD 146
+ G +
Sbjct: 146 NVITDGGKVTFDLNR 160
Score = 39.9 bits (93), Expect = 3e-04
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 93 YVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEK---------LRWIFCLYDINGDGVIS 143
+ D NK +++E+++ + + ++F D++GDG++
Sbjct: 64 DLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVD 123
Query: 144 KDDL 147
++
Sbjct: 124 LEEF 127
Score = 39.1 bits (91), Expect = 7e-04
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 114 GLSILCRGSEEEKLRWIF-CLYDINGDGVISKDDLYNIVSSVYELMG 159
GL+ +++K+++ F D+N DG I +D ++++ E+
Sbjct: 1 GLNDF----QKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNK 43
Score = 37.6 bits (87), Expect = 0.002
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 87 QIRYAHYVFNT-LDHNKTGFLNFEDFVKGLSILCR------GSEEEK---------LRWI 130
Q + + F+ LD N G + DF ++ + K R +
Sbjct: 6 QKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDL 65
Query: 131 FCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQV 181
DIN D V+S ++ ++ + + T A R+ +LF+
Sbjct: 66 KGRADINKDDVVSWEEY---LAMWEKTIATCKSVADLPAWCQNRIPFLFKG 113
Score = 27.2 bits (60), Expect = 6.2
Identities = 3/41 (7%), Positives = 10/41 (24%)
Query: 91 AHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIF 131
V+N + + + + L + +
Sbjct: 141 VPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAGNTLM 181
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 44.0 bits (105), Expect = 8e-06
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
N D G + F +F+ G + SE+ LR F +D G G I K L
Sbjct: 49 NEADATGNGKIQFPEFLSMMGRRMKQTTSEDI-LRQAFRTFDPEGTGYIPKAAL 101
Score = 32.5 bits (75), Expect = 0.065
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 123 EEEK--LRWIFCLYDINGDGVISKDDL 147
+++ + F L+D G I+K+ L
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGL 28
Score = 27.8 bits (63), Expect = 2.4
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--EEKLRWIFCLYDINGDGVI 142
+ + + A F D +TGF+ E L G +F D G+G I
Sbjct: 5 VSEFKEA---FELFDSERTGFITKEGLQTVLKQF--GVRVEPAAFNEMFNEADATGNGKI 59
Query: 143 SKDDLYNIVSSVY-------ELMGTYAYRAFD 167
+ +++ L A+R FD
Sbjct: 60 QFPEFLSMMGRRMKQTTSEDILRQ--AFRTFD 89
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 44.4 bits (106), Expect = 9e-06
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
N +D + G ++F +F+ + SEEE +R F ++D +G+G IS +L
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-IREAFRVFDKDGNGYISAAEL 106
Score = 37.9 bits (89), Expect = 0.001
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 99 DHNKTGFLNFEDFV----KGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
D + G +N+E+FV + +E +R
Sbjct: 130 DIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
Score = 34.8 bits (81), Expect = 0.015
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+EE+ + F L+D +GDG I+ +L
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKEL 33
Score = 27.9 bits (63), Expect = 3.5
Identities = 10/59 (16%), Positives = 30/59 (50%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F D + G+++ + ++ L +E++ + DI+GDG ++ ++ ++++
Sbjct: 90 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 42.5 bits (100), Expect = 1e-05
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
H I Q F D KT ++ E+F + + +E+ ++ +N
Sbjct: 21 SHYHAITQE------FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAK 74
Query: 140 GVIS 143
G +
Sbjct: 75 GRLK 78
Score = 34.8 bits (80), Expect = 0.006
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELM 158
S + F +D IS+++ I + +++
Sbjct: 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQIL 57
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 43.2 bits (103), Expect = 1e-05
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
N +D + G ++F +F+ + + SEEE L F ++D +G+G+IS +L
Sbjct: 53 NEVDADGNGTIDFPEFLSLMARKMKEQDSEEE-LIEAFKVFDRDGNGLISAAEL 105
Score = 34.0 bits (79), Expect = 0.025
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+EE+ + F L+D +GDG I+ +L
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKEL 32
Score = 27.8 bits (63), Expect = 2.9
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F D + G ++ + ++ L ++++ + DI+GDG I+ ++ ++ S
Sbjct: 89 FKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS 147
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 43.6 bits (103), Expect = 1e-05
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 122 SEEE--KLRWIFCLYDINGDGVISKDDLYNIVSSVYELMG 159
S+ K++ F D + DG I++ D ++ +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESE 40
Score = 41.6 bits (98), Expect = 6e-05
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+ + F +D N+ ++ +++ +L G ++ F D N D
Sbjct: 85 NPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML--GLDKTMAPASFDAIDTNND 142
Query: 140 GVISKDD 146
G++S ++
Sbjct: 143 GLLSLEE 149
Score = 41.6 bits (98), Expect = 7e-05
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 99 DHNKTGFLNFEDFVKGLSILCRGSEEEK-----LRWIFCLYDINGDGVISKDDL 147
++ F+ + + + E + L F D N D IS+D+
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEY 116
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 87 QIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEE-----EKLR------WIFCLYD 135
++ FN +D +K G + DF + SE + L W L
Sbjct: 4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTA 63
Query: 136 INGDGVISKD 145
+ G I +
Sbjct: 64 VAGGKGIDET 73
Score = 28.1 bits (63), Expect = 2.7
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIF 131
F+ +D N G L+ E+FV S + + +
Sbjct: 133 SFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDSTNKVFW 170
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 43.2 bits (103), Expect = 2e-05
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVKGLS--ILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
N +D + + F +F+ +S + C SE+E L F ++D NGDG+IS +L
Sbjct: 54 NEIDVDGNHAIEFSEFLALMSRQLKCNDSEQE-LLEAFKVFDKNGDGLISAAEL 106
Score = 34.0 bits (79), Expect = 0.023
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+EE+ + F L+D + G IS +L
Sbjct: 6 TEEQIAEFKEAFALFDKDNSGSISASEL 33
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 43.3 bits (103), Expect = 2e-05
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 96 NTLDHNKTGFLNFEDFV----KGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+D + +G ++FE+F+ + + +G EE+L F ++D N DG I ++L
Sbjct: 63 EEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEEL 118
Score = 34.5 bits (80), Expect = 0.019
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
SEE + F ++D +G G IS +L
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKEL 42
Score = 28.7 bits (65), Expect = 1.7
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSV 154
F D N GF++ E+ + L EE + + D N DG I D+ ++ V
Sbjct: 102 FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV 161
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 44.4 bits (105), Expect = 2e-05
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+F ++++ G +++ V ++ + L F D N +G +S+ +
Sbjct: 163 LFVMVENDTKGRMSYITLVA-VAN-----DLAALVADFRKIDTNSNGTLSRKEFREHFVR 216
Query: 154 VYE 156
+
Sbjct: 217 LGF 219
Score = 43.3 bits (102), Expect = 4e-05
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
D +R F + + +G +F+D + L+ E L+ +F + + + G +S
Sbjct: 120 DTNILRQL---FLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMS 176
Query: 144 KDDLYNIVSSVYELMGTYAYRAFD 167
L + + + L+ +R D
Sbjct: 177 YITLVAVANDLAALVA--DFRKID 198
Score = 42.9 bits (101), Expect = 6e-05
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+F D +++ + F ++V L LR ++ D + G +SK+++
Sbjct: 228 LFRYADEDESDDVGFSEYVH----LGL--CLLVLRILYAFADFDKSGQLSKEEV 275
Score = 39.4 bits (92), Expect = 9e-04
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 83 LDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
D+ + F +D N G L+ ++F + L + +F D + +
Sbjct: 185 NDLAALVAD---FRKIDTNSNGTLSRKEFREHFVRLGFDKKSV-QDALFRYADEDESDDV 240
Query: 143 SKDDLYNIVSSVYELMGTYAYRAFD 167
+ ++ + L Y D
Sbjct: 241 GFSEYVHLGLCLLVL--RILYAFAD 263
Score = 32.9 bits (75), Expect = 0.12
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVISKDD 146
++ D +K+G L+ E+ K L S +K F + D++ +S +
Sbjct: 258 LYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQE 311
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 43.3 bits (103), Expect = 2e-05
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ +D + +G ++FE+F+ + R S EE + F L+D + G I+ DL
Sbjct: 71 SEIDKDGSGTIDFEEFLTMMTAKMGERDSREE-ILKAFRLFDDDNSGTITIKDL 123
Score = 33.7 bits (78), Expect = 0.035
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+EE+K +R F L+D +G G I +L
Sbjct: 23 TEEQKQEIREAFDLFDTDGSGTIDAKEL 50
Score = 30.6 bits (70), Expect = 0.34
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
F D + +G + +D + L EE+L+ + D N D I +D+ I+
Sbjct: 107 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 42.9 bits (102), Expect = 2e-05
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 96 NTLDHNKTGFLNFEDFV-----KGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ D G ++F+ F + +++LR F LYD G+G IS D +
Sbjct: 57 DEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVM 113
Score = 30.6 bits (70), Expect = 0.35
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 122 SEEEK--LRWIFCLYD-INGDGVISKDDL 147
S + L F ++ G G +S D +
Sbjct: 8 SSNQVKLLETAFRDFETPEGSGRVSTDQI 36
Score = 27.5 bits (62), Expect = 3.9
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F D G+++ + + L+ L E L + D +G G + ++ +++
Sbjct: 97 FRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 44.5 bits (105), Expect = 2e-05
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 96 NTLDHNKTGFLNFEDFVKGLS--ILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
N +D + G ++F +F+ ++ + SEEE +R F ++D +G+G IS +L +++++
Sbjct: 355 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-IREAFRVFDKDGNGYISAAELRHVMTN 413
Query: 154 VYE 156
+ E
Sbjct: 414 LGE 416
Score = 34.5 bits (79), Expect = 0.041
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 101 NKTGFLNFEDFVKGLSILCRGSEEEK--LRWIFCLYDINGDGVISKDDLYNI 150
+ N + + +EE+ + F L+D +GDG I+ +L +
Sbjct: 286 DFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTV 337
Score = 32.9 bits (75), Expect = 0.11
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDG 140
+L +QI F+ D + G + ++ + L + E +L+ + D +G+G
Sbjct: 304 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG 363
Query: 141 VISKDDLYNIVSSVY-------ELMGTYAYRAFD 167
I + +++ E+ A+R FD
Sbjct: 364 TIDFPEFLTMMARKMKDTDSEEEIRE--AFRVFD 395
Score = 30.6 bits (69), Expect = 0.57
Identities = 11/60 (18%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F D + G+++ + ++ L + ++EE + + DI+GDG ++ ++ ++++
Sbjct: 391 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNYEEFVQMMTA 449
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 42.3 bits (100), Expect = 2e-05
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 96 NTLDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ED + + E L F L +I+ + L
Sbjct: 10 LETTSTTKMETKYEDMLPVMAEKMDVEEFVSE-LCKGFSLLADPERHLITAESL 62
Score = 35.0 bits (81), Expect = 0.007
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSE---EEKLRWIFCLYDINGDGVISKDDLYNI 150
F+ L + + E + IL G E +E + + D++GDG +++ + +
Sbjct: 45 GFSLLADPERHLITAESLRRNSGIL--GIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 41.2 bits (97), Expect = 3e-05
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 83 LDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
D +++ VF D N++G L E+F + L +F D + DG I
Sbjct: 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTEL--RVRPADAEAVFQRLDADRDGAI 78
Query: 143 S 143
+
Sbjct: 79 T 79
Score = 37.7 bits (88), Expect = 4e-04
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 121 GSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
G E +LR +F D N G + +++ + +
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTE 55
Score = 30.0 bits (68), Expect = 0.25
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGL 115
VF LD ++ G + F++F +G
Sbjct: 66 VFQRLDADRDGAITFQEFARGF 87
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 43.3 bits (102), Expect = 3e-05
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRG-----------SEEEKLRWIFCLYDINGDGVI 142
F L ED+V+ + + + D +GDG +
Sbjct: 86 FFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTV 145
Query: 143 SKDDL 147
D+L
Sbjct: 146 DVDEL 150
Score = 42.9 bits (101), Expect = 4e-05
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 122 SEEE--KLRWIFCLYDINGDGVISKDDLYNIVSSVYELMG 159
+ +L F +D++ DG + D++ + +L+
Sbjct: 31 HPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVN 70
Score = 40.2 bits (94), Expect = 3e-04
Identities = 9/94 (9%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 57 GNGKNITFIQ-----QQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDF 111
+ + R I + + ++ LD + G ++ ++
Sbjct: 94 PVNG-LLREDWVEANRVFAEAERERERRGEPSLIALLSNS--YYDVLDDDGDGTVDVDEL 150
Query: 112 VKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+ +E F D + G + +
Sbjct: 151 KTMMKAF--DVPQEAAYTFFEKADTDKSGKLERT 182
Score = 39.8 bits (93), Expect = 4e-04
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 83 LDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE---------EEKLRWIFCL 133
L K + + F+T D + G + ++ + + + + +R F
Sbjct: 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLH 89
Query: 134 YDINGDGVISKDD 146
+ + ++D
Sbjct: 90 KGVEPVNGLLRED 102
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 42.1 bits (100), Expect = 3e-05
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 98 LDHNKTGFLNFEDFVKGLSILCR-------GSEEEKLRWIFCLYDINGDGVISKDDL 147
++ ++ E F L +L R G EE F ++D + G+I +L
Sbjct: 46 IESTLPAEVDMEQF---LQVLNRPNGFDMPGDPEE-FVKGFQVFDKDATGMIGVGEL 98
Score = 34.0 bits (79), Expect = 0.022
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDL 147
+++ + F L+D +G G I K +
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSI 27
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 4e-05
Identities = 42/235 (17%), Positives = 72/235 (30%), Gaps = 69/235 (29%)
Query: 81 HKLD--IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDING 138
H +D + +Y Y + L + + FV C+ ++ +
Sbjct: 5 HHMDFETGEHQY-QYK-DILSVFE------DAFVDNFD--CKDVQDM-PK---------- 43
Query: 139 DGVISKDDLYNIVSSVYELMGTYAYRAFD------SGMVAQRVEYLFQVSTKGFEMSILC 192
++SK+++ +I+ S + GT R F MV + VE + +++ F M
Sbjct: 44 -SILSKEEIDHIIMSKDAVSGT--LRLFWTLLSKQEEMVQKFVEEVLRINY-KFLM---- 95
Query: 193 SISIPRSPYSLVPEGGEGAPHLNTPLFSLPFSSSVPEGQSSLQAIRPIQSSVPGLKAIRP 252
SP P + T + + + Q V R
Sbjct: 96 ------SPIKTEQRQ----PSMMTRM----YIEQRDRLYNDNQVFAKYN--VS-----RL 134
Query: 253 PAKSMPDLKP--LPLRVSEPESN-SYHGNGTSGPAVVTAAKVTLLADSQTQSSFS 304
+ L+ L LR P N G SG V A V + Q
Sbjct: 135 --QPYLKLRQALLELR---PAKNVLIDGVLGSGKTWV-ALDV--CLSYKVQCKMD 181
Score = 30.2 bits (67), Expect = 1.0
Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 46/224 (20%)
Query: 19 MINGSELVCRVKYN-NTLPDIPFDCKFIAYPFESTRRGSGNGKNITFIQQQKDNNCL--- 74
+ +L+ ++ N + D + I S + ++ + NCL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSN---IKLRIHSIQAELRR-----LLKSKPYENCLLVL 250
Query: 75 ---AGGRCDHKLDIK-QI----RYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEK 126
+ + ++ +I R+ V + L T ++ + L + +E
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTL------TPDEV 303
Query: 127 LRWIFCLYDINGDGVISKDDLYNIVSSVYEL-MGTYAYRAFDSGMVAQRVEYLFQVSTKG 185
+ Y ++ DL V + + A +A + V+
Sbjct: 304 KS-LLLKY-LD----CRPQDLPREVLTTNPRRLSIIA--ESIRDGLA-TWDNWKHVNCDK 354
Query: 186 FEMSILCSISIPRSPYSLVPEGGEGAPHLNTPLFSLPFSSSVPE 229
I S++ L P E + L P S+ +P
Sbjct: 355 LTTIIESSLN------VLEPA--EYRKMFDR-LSVFPPSAHIPT 389
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 41.9 bits (98), Expect = 4e-05
Identities = 8/59 (13%), Positives = 26/59 (44%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQ 180
S +E F ++D +G+ ++ +L ++ V++ G+ + ++ + +
Sbjct: 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLR 123
Score = 29.9 bits (67), Expect = 0.50
Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRW---------- 129
+ ++ ++++ + F D++ L+ + ++ + + E+
Sbjct: 61 EAEMSPQELQL--HYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINII 118
Query: 130 --IFCLYDINGDGVIS 143
+ D N DG I
Sbjct: 119 DGVLRDDDKNNDGYID 134
Score = 29.9 bits (67), Expect = 0.50
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGL 115
V D N G++++ +F K L
Sbjct: 121 VLRDDDKNNDGYIDYAEFAKSL 142
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 41.8 bits (99), Expect = 5e-05
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 96 NTLDHNKTGFLNFEDFV-----KGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
++ N G ++F+DFV K L+ ++LR F +D NGDG IS +L
Sbjct: 54 QQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSEL 110
Score = 35.6 bits (83), Expect = 0.006
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
EE LR F +D + DG I+ DL
Sbjct: 6 RPEEIEELREAFREFDKDKDGYINCRDL 33
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 41.8 bits (99), Expect = 6e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 98 LDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ +G +NF F+ G + E+ + F + D +G G I K L
Sbjct: 67 MIKEASGPINFTVFLTMFGEKLKGADPEDV-IMGAFKVLDPDGKGSIKKSFL 117
Score = 35.6 bits (83), Expect = 0.006
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
E E + F + D N DG+I KDDL
Sbjct: 20 DETEIEDFKEAFTVIDQNADGIIDKDDL 47
Score = 30.6 bits (70), Expect = 0.35
Identities = 7/58 (12%), Positives = 24/58 (41%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
F LD + G + + L+ E+++ ++ + + G + ++ +++
Sbjct: 101 FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158
Score = 27.9 bits (63), Expect = 2.9
Identities = 3/28 (10%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 99 DHNKTGFLNFEDFVKGLSILCRGSEEEK 126
+ G +++++ ++ G + E
Sbjct: 141 PPDVAGNVDYKNICY---VITHGEDAEG 165
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 41.4 bits (98), Expect = 6e-05
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 99 DHNKTGFLNFEDFV-------KGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIV 151
L + K L + E+ F ++D G +S DL ++
Sbjct: 51 SLRDASSLTLDQITGLIEVNEKELDATTKAKTED-FVKAFQVFDKESTGKVSVGDLRYML 109
Query: 152 SS 153
+
Sbjct: 110 TG 111
Score = 31.8 bits (73), Expect = 0.11
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 122 SEEEKLRWIFCLYDINGDGVISKDDL 147
S + IF L+D G G I+KD L
Sbjct: 1 SATRANKDIFTLFDKKGQGAIAKDSL 26
Score = 29.5 bits (67), Expect = 0.74
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F D TG ++ D L+ L + ++ E + + +++ +G I V
Sbjct: 89 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAE-VDELLKGVEVDSNGEIDYKKFIEDVLR 147
Score = 28.3 bits (64), Expect = 2.1
Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 22/98 (22%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRG-----SEEEKLRWIFCLYDINGD 139
+ + F D G + + L R + + I +
Sbjct: 3 TRANKDI---FTLFDKKGQGAIAKDS----LGDYLRAIGYNPTNQLVQDIINADSSLRDA 55
Query: 140 GVISKDDLYNIVSSVYELMGTY----------AYRAFD 167
++ D + ++ + + A++ FD
Sbjct: 56 SSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFD 93
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 41.4 bits (98), Expect = 7e-05
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 96 NTLDHNKTGFLNFEDFV-----KGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ +D + +G ++F++F+ SEEE L +F ++D N DG I ++L
Sbjct: 62 DEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEE-LSDLFRMFDKNADGYIDLEEL 117
Score = 29.1 bits (66), Expect = 1.0
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+++ F D N G+++ E+ L E+ + + D N D
Sbjct: 89 SKGKSEEELSDL---FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNND 145
Query: 140 GVISKDDLYNIVSSV 154
G I D+ + V
Sbjct: 146 GRIDYDEFLEFMKGV 160
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 40.9 bits (97), Expect = 8e-05
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 98 LDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ G +NF F+ G + E+ +R F +D G I +D L
Sbjct: 48 MMSEAPGPINFTMFLTMFGEKLNGTDPEDV-IRNAFACFDEEASGFIHEDHL 98
Score = 35.5 bits (83), Expect = 0.005
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+ + + F + D N DG I K+DL
Sbjct: 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDL 29
Score = 30.2 bits (69), Expect = 0.37
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGDGVISKDDLYNIV 151
F D +GF++ + + L+ + R ++EE + ++ I+ G + + I+
Sbjct: 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEE-VDEMYREAPIDKKGNFNYVEFTRIL 138
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 39.6 bits (93), Expect = 9e-05
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 99 DHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
H+ + + + S++ EE++R F + D +G+G IS +L +++++
Sbjct: 3 SHHHHHHGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTN 57
Score = 29.6 bits (67), Expect = 0.31
Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
++IR A F D + G+++ + ++ L +E++ + DI+GDG ++ +
Sbjct: 29 EEIREA---FRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 85
Query: 146 DLYNIVSS 153
+ ++++
Sbjct: 86 EFVQMMTA 93
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 41.0 bits (97), Expect = 1e-04
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 99 DHNKTGFLNFEDFVKGLSILCR------GSEEEKLRWIFCLYDINGDGVISKDDL 147
L FE+F L G+ + F +D G G IS +L
Sbjct: 56 HKMGEKSLPFEEF---LPAYEGLMDCEQGTFAD-YMEAFKTFDREGQGFISGAEL 106
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 122 SEEEK--LRWIFCLYDI--NGDGVISKDDL 147
S++E L+ +F L+D DG + L
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKL 33
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 41.3 bits (97), Expect = 1e-04
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 122 SEEE--KLRWIFCLYDINGDGVISKDDLYNIVSSV 154
+ + + +F D+N +G IS D++ S +
Sbjct: 11 NPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDI 45
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
+F+ +D ++ G + +++ E F + DI+ G + D+
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
Score = 34.0 bits (78), Expect = 0.028
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEK-----------LRWIFCLYDINGDGVIS 143
F ++ +++G L E+ +F + D + +G I+
Sbjct: 68 FGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAIT 127
Query: 144 KDDL 147
D+
Sbjct: 128 LDEW 131
Score = 31.7 bits (72), Expect = 0.16
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGS-----EEEKLRWIFCLYDINGD 139
I + ++ FN LD N G ++ ++ V S + + E+ K G
Sbjct: 15 IGRHKHM---FNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGA 71
Query: 140 GVISKDDL 147
G+ +
Sbjct: 72 GMKYGVET 79
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 40.6 bits (96), Expect = 1e-04
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 99 DHNKTGFLNFEDFVKGLSILCR-------GSEEEKLRWIFCLYDINGDGVISKDDL 147
+ + FE+F L +L G+ E+ ++D G+G + +L
Sbjct: 56 EEMNAAAITFEEF---LPMLQAAANNKDQGTFED-FVEGLRVFDKEGNGTVMGAEL 107
Score = 33.7 bits (78), Expect = 0.029
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
S+ + F L+D GD I+ +
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQV 30
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 40.6 bits (96), Expect = 1e-04
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 104 GFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELM 158
G LNF F+ + SEE +R F ++D ++ + + +++ ++ +
Sbjct: 65 GPLNFTMFLSIFSDKLSGTDSEET-IRNAFAMFDEQETKKLNIEYIKDLLENMGDNF 120
Score = 35.6 bits (83), Expect = 0.008
Identities = 7/28 (25%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+++ ++ F + D++ DG +SK+D+
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDI 40
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 41.1 bits (97), Expect = 1e-04
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ D +NF +F + + + +F YD + G+I K++L +S
Sbjct: 51 SMFDRENKAGVNFSEFTG----VWK--YITDWQNVFRTYDRDNSGMIDKNELKQALSG 102
Score = 36.8 bits (86), Expect = 0.003
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 99 DHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
D G + F+DF++G +L ++L IF YD + DG I
Sbjct: 120 DRQGRGQIAFDDFIQGCIVL------QRLTDIFRRYDTDQDGWIQ 158
Score = 32.6 bits (75), Expect = 0.089
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVIS 143
I + F T D + +G ++ + + LS R S++ + +D G G I+
Sbjct: 73 ITDWQNV---FRTYDRDNSGMIDKNELKQALSGFGYRLSDQF-HDILIRKFDRQGRGQIA 128
Query: 144 KDDLYNIVSSVYELMGTYAYRAFD 167
DD + L T +R +D
Sbjct: 129 FDDFIQGCIVLQRL--TDIFRRYD 150
Score = 31.4 bits (72), Expect = 0.22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
++ L +F D + GVIS +L +S+
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSN 35
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 41.1 bits (97), Expect = 1e-04
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ D N +G + F++F L +R F D +GDG + +++ + S
Sbjct: 70 HMYDKNHSGEITFDEFKD----LHH--FILSMREGFRKRDSSGDGRLDSNEVRAALLS 121
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 99 DHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
D + G L F+D+V+ + ++R +F YD G ++
Sbjct: 139 DRQRRGSLGFDDYVELSIFV------CRVRNVFAFYDRERTGQVT 177
Score = 34.6 bits (80), Expect = 0.019
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
F D + G L+ + L + SE+ + + +D G + DD +
Sbjct: 98 GFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQT-FQALMRKFDRQRRGSLGFDDYVELSI 156
Query: 153 SVYELMGTYAYRAFD 167
V + + +D
Sbjct: 157 FVCRV--RNVFAFYD 169
Score = 29.2 bits (66), Expect = 1.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDL 147
+ ++L F D +G G IS +L
Sbjct: 25 DNQELMEWFRAVDTDGSGAISVPEL 49
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 104 GFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
G +++ F L L ++ + ++ +F + D + G I +++L
Sbjct: 22 GTFDYKRFFH-LVGLKGKTDAQ-VKEVFEILDKDQSGFIEEEEL 63
Score = 30.6 bits (70), Expect = 0.17
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 94 VFNTLDHNKTGFLNFED---FVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNI 150
VF LD +++GF+ E+ +KG S R + + + + D + DG I D+ +
Sbjct: 46 VFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
Query: 151 VSS 153
V+
Sbjct: 106 VAQ 108
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 101 NKTGFLNFEDFVKGLSILCRGSEEEK--LRWIFCLYDINGDGVISKDDL 147
+ +G ++ +D + R SEEE L+ +F + D + G I+ D+L
Sbjct: 1 HSSGHIDDDDKH----MAERLSEEEIGGLKELFKMIDTDNSGTITFDEL 45
Score = 33.6 bits (78), Expect = 0.009
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI 142
+I ++ F +D + +G + F++ GL + E +++ + DI+ G I
Sbjct: 21 EIGGLKEL---FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 76
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 40.9 bits (96), Expect = 2e-04
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
D + G ++F +F+ + E +F + G + ++ +
Sbjct: 94 RIFDTDFNGHISFYEFMAMYKFM------ELAYNLFVMNARARSGTLEPHEILPALQQ 145
Score = 34.8 bits (80), Expect = 0.020
Identities = 12/94 (12%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDG 140
+ + + Q + F +D +++G L + + G + + ++D + +G
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNG 102
Query: 141 VISKDDLYNIVSSVYELMGTYAYRAFD---SGMV 171
IS + + + + SG +
Sbjct: 103 HISFYEFMAMYKFMELAYN--LFVMNARARSGTL 134
Score = 27.8 bits (62), Expect = 3.6
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRG-SEEEKLRWIFCLYDINGDGVISKDD 146
+F ++G L + + L L G ++ + G +
Sbjct: 122 LFVMNARARSGTLEPHEILPALQQL--GFYINQRTSLLLHRLFARGMAFCDLNC 173
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 40.3 bits (95), Expect = 2e-04
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 99 DHNKTGFLNFEDFV----KGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
E+ + + S + +E F +D G G+IS ++
Sbjct: 56 KKMGEKAYKLEEILPIYEEMSSKDTGTAADE-FMEAFKTFDREGQGLISSAEI 107
Score = 30.2 bits (69), Expect = 0.42
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 122 SEEEK--LRWIFCLYDI--NGDGVISKDDL 147
+++E +R +F L+D DG + +
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKV 33
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 39.8 bits (94), Expect = 2e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 104 GFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
G LNF F+ G + E+ LR F ++D +G G I +D L
Sbjct: 63 GQLNFTAFLTLFGEKVSGTDPEDA-LRNAFSMFDEDGQGFIPEDYL 107
Score = 35.2 bits (82), Expect = 0.009
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
S+ + L+ F + D + DG I +DL
Sbjct: 11 SQRQMQELKEAFTMIDQDRDGFIGMEDL 38
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 38.4 bits (90), Expect = 4e-04
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 104 GFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
N++ F L S ++ ++ F + D + G I +D+L
Sbjct: 23 DSFNYKAFFA-KVGLTAKSADD-IKKAFFVIDQDKSGFIEEDEL 64
Score = 30.7 bits (70), Expect = 0.16
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 94 VFNTLDHNKTGFLNFE---DFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
F +D +K+GF+ + F++ S R + + + D +GDG I
Sbjct: 47 AFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIG 99
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 38.0 bits (89), Expect = 5e-04
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 73 CLAGGRCDHK-------LDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE-- 123
C + + L +F +D++++G+L+ ++ L +
Sbjct: 18 CQDPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDAREL 77
Query: 124 -EEKLRWIFCLYDINGDGVIS 143
E + + + D +GDG I
Sbjct: 78 TESETKSLMDAADNDGDGKIG 98
Score = 38.0 bits (89), Expect = 5e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 104 GFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ F + GLS +++ IF D + G + D+L
Sbjct: 22 DTFEPQKFFQTSGLS----KMSASQVKDIFRFIDNDQSGYLDGDEL 63
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 38.0 bits (88), Expect = 5e-04
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 127 LRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVA----QRVEYLFQ 180
+ F L+DIN DGV+ + +L + + E + D + + E++ +
Sbjct: 22 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMK 79
Score = 29.9 bits (67), Expect = 0.29
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 16/68 (23%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSIL-------------CRGSEEEKLR---WIFCLYDIN 137
F D N G L+ ++ + R EEE+LR + D N
Sbjct: 25 FFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTN 84
Query: 138 GDGVISKD 145
D +++ +
Sbjct: 85 QDRLVTLE 92
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 38.0 bits (89), Expect = 5e-04
Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 101 NKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
N++ F ++ ++++ +F + D + G I +++L
Sbjct: 20 QAADSFNYKSFFS--TVGLSSKTPDQIKKVFGILDQDKSGFIEEEEL 64
Score = 33.4 bits (77), Expect = 0.021
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 73 CLAGGRCDHK-------LDIKQIRYAHYVFNTLDHNKTGFLNFE---DFVKGLSILCRGS 122
C A ++K L K VF LD +K+GF+ E F+K S R
Sbjct: 19 CQAADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVL 78
Query: 123 EEEKLRWIFCLYDINGDGVIS 143
+ + D +GDG I
Sbjct: 79 TSAETKAFLAAGDTDGDGKIG 99
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 37.9 bits (89), Expect = 6e-04
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 104 GFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
G N + F L L S + ++ +F D + G I +++L
Sbjct: 23 GSFNHKKFFA-LVGLKAMSAND-VKKVFKAIDADASGFIEEEEL 64
Score = 30.2 bits (69), Expect = 0.23
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 94 VFNTLDHNKTGFLNFED---FVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
VF +D + +GF+ E+ +K + R + + + D +GDG I D
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 37.7 bits (88), Expect = 6e-04
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 104 GFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ + F + GL + ++ +F + D + G I +D+L
Sbjct: 22 DSFDHKKFFQMVGLK----KKSADDVKKVFHILDKDKSGFIEEDEL 63
Score = 36.1 bits (84), Expect = 0.003
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSE---EEKLRWIFCLYDINGDGVISKDDLYNI 150
VF+ LD +K+GF+ ++ L + ++ + + D +GDG I ++ +
Sbjct: 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL 105
Query: 151 VSS 153
V+
Sbjct: 106 VAE 108
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 38.3 bits (90), Expect = 6e-04
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 98 LDHNKTGFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ L +E +++ + + + + EE L +F +D N G ++K + NI+++
Sbjct: 56 IKELYGDNLTYEQYLEYLSICVHDKDNVEE-LIKMFAHFDNNCTGYLTKSQMKNILTT 112
Score = 33.0 bits (76), Expect = 0.054
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
EE+ + + G IS D+
Sbjct: 10 LEEKVDESDVRIYFNEKSSGGKISIDNA 37
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 37.0 bits (86), Expect = 8e-04
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+F D + GF++ + + G L I+ L D G +SKD
Sbjct: 15 IFLKTDKDMDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKLSKD 64
Score = 28.5 bits (64), Expect = 0.91
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 122 SEEEKLRW--IFCLYDINGDGVISKDDLYNI 150
S EK ++ IF D + DG +S ++ I
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREI 35
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 36.8 bits (86), Expect = 8e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDL 147
+ +L F D NGDG ++ +L
Sbjct: 5 VKAELEAAFKKLDANGDGYVTALEL 29
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 38.6 bits (90), Expect = 9e-04
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDLYNIVSSV 154
+ + +F DING+G I+ D++ + S
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDD 49
Score = 37.4 bits (87), Expect = 0.003
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILCRGSE-----------EEKLRWIFCLYDINGDGVIS 143
F + F F+ G L E +F ++D +G G I+
Sbjct: 72 FRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTIT 131
Query: 144 KDDL 147
D+
Sbjct: 132 LDEW 135
Score = 28.9 bits (65), Expect = 1.5
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+ L + F+ D + +G + +++ I +E F D++
Sbjct: 107 EPTLIREWGDAV---FDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNA 163
Query: 140 GVIS 143
G +
Sbjct: 164 GDLD 167
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
LD + TG + F F + L + F D +G G + +L +
Sbjct: 47 AMLDRDHTGKMGFNAFKE----LWA--ALNAWKENFMTVDQDGSGTVEHHELRQAIGL 98
Score = 32.0 bits (73), Expect = 0.11
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F T+D + +G + + + + ++ + L I Y +G I DD
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFFDDYVACCVK 132
Query: 154 VYELMGTYAYRAFD 167
+ L T +R D
Sbjct: 133 LRAL--TDFFRKRD 144
Score = 32.0 bits (73), Expect = 0.14
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 100 HNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
++K G + F+D+V L L F D G +
Sbjct: 115 YSKNGRIFFDDYVACCVKL------RALTDFFRKRDHLQQGSAN 152
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
SEE + F ++D +G G IS +L
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKEL 42
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 36.1 bits (84), Expect = 0.001
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+ EE+ + F L+D + D ++ ++L
Sbjct: 9 TAEEQQEYKEAFQLFDKDNDNKLTAEEL 36
Score = 28.0 bits (63), Expect = 1.1
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
+ ++ + A F D + L E+ + L ++K+ I YD + G
Sbjct: 12 EQQEYKEA---FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFD 68
Query: 144 KDDLYNIVS 152
++ I+
Sbjct: 69 QETFLTIML 77
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 36.1 bits (84), Expect = 0.002
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+ ++ IF +D NGDG IS +L
Sbjct: 6 TPQDIADRERIFKRFDTNGDGKISSSEL 33
Score = 30.7 bits (70), Expect = 0.10
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
DI F D N G ++ + L L + +E +R + D +GDG IS
Sbjct: 9 DIADRERI---FKRFDTNGDGKISSSELGDALKTLGSVTPDE-VRRMMAEIDTDGDGFIS 64
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 37.4 bits (87), Expect = 0.002
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ LD + +G + F +F + L R F +D + G + +L +++
Sbjct: 49 SMLDRDMSGTMGFNEFKE----LWA--VLNGWRQHFISFDSDRSGTVDPQELQKALTT 100
Score = 32.0 bits (73), Expect = 0.13
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
F + D +++G ++ ++ K L+ + + + I Y G I+ DD
Sbjct: 77 HFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS--TSGKITFDDYIACCVK 134
Query: 154 VYELMGTYAYRAFD 167
+ L T ++R D
Sbjct: 135 LRAL--TDSFRRRD 146
Score = 32.0 bits (73), Expect = 0.14
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 102 KTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI--SKDDLYNIVSSV 154
+G + F+D++ L L F D G++ S DD V +V
Sbjct: 119 TSGKITFDDYIACCVKL------RALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 167
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
SEE+K ++ F L+D N G I +L
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHEL 29
Score = 29.4 bits (67), Expect = 0.25
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSE--EEKLRWIFCLYDINGDGVI 142
++I+ A F+ D NKTG +++ + + L G + + ++ + YD G+G I
Sbjct: 6 KQEIKEA---FDLFDTNKTGSIDYHELKVAMRAL--GFDVKKPEILELMNEYDREGNGYI 60
Query: 143 SKDDLYNIVS 152
DD +I++
Sbjct: 61 GFDDFLDIMT 70
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 104 GFLNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ + F + G+S +L+ IF + D + G I +D+L
Sbjct: 22 DSFSPKKFFQISGMS----KKSSSQLKEIFRILDNDQSGFIEEDEL 63
Score = 35.3 bits (82), Expect = 0.004
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 71 NNCLAGGRCDHK-------LDIKQIRYAHYVFNTLDHNKTGFLNFED---FVKGLSILCR 120
+C A K + K +F LD++++GF+ ++ F++ R
Sbjct: 16 RDCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGAR 75
Query: 121 GSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ + D +GDG I ++ +V S
Sbjct: 76 VLTASETKTFLAAADHDGDGKIGAEEFQEMVQS 108
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 36.7 bits (86), Expect = 0.003
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 106 LNFEDFVK--GLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
+ F I + +++ F D G+G I + +L
Sbjct: 55 FDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAEL 98
Score = 34.4 bits (80), Expect = 0.016
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDL 147
++++ F ++D + DG +S ++L
Sbjct: 3 SADQIQECFQIFDKDNDGKVSIEEL 27
Score = 27.5 bits (62), Expect = 3.0
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVISK 144
K++ A F LD G + + + L L + E + + ++GDG I+
Sbjct: 76 KEMLDA---FRALDKEGNGTIQEAELRQLLLNLGDALTSSE-VEELMKEVSVSGDGAINY 131
Query: 145 DDLYNIVSSVYEL 157
+ +++ + Y L
Sbjct: 132 ESFVDMLVTGYPL 144
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 124 EEKLRWIFCLYDINGDGVISKDDL 147
+ + IF +D NGDG IS +L
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSEL 25
Score = 26.8 bits (60), Expect = 2.6
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
+F D N G ++ + L L S +E ++ + D +GDG I ++
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTLGSTSADE-VQRMMAEIDTDGDGFIDFNE 59
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 35.5 bits (82), Expect = 0.003
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+Q +Y F T+ + GF+ + + +L I+ L D + DG ++ D
Sbjct: 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGALTLD 63
Score = 27.4 bits (61), Expect = 2.1
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 122 SEEEKLRW--IFCLYDINGDGVISKDDLYNI 150
++E++ + F + +G I
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEF 34
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 35.6 bits (83), Expect = 0.003
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 104 GFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
++F + + ++ F + D + G I +D+L
Sbjct: 22 DSFKHKEFFA--KVGLASKSLDDVKKAFYVIDQDKSGFIEEDEL 63
Score = 30.2 bits (69), Expect = 0.28
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 94 VFNTLDHNKTGFLNFED---FVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
F +D +K+GF+ ++ F++ S R + + + D +GDG+I
Sbjct: 46 AFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIG 98
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 36.3 bits (84), Expect = 0.005
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
+ LD + +G + F +F + ++L R F +D + G + +L +++
Sbjct: 80 SMLDRDMSGTMGFNEFKELWAVL------NGWRQHFISFDTDRSGTVDPQELQKALTT 131
Score = 31.3 bits (71), Expect = 0.29
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 100 HNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVI--SKDDLYNIVSSV 154
++ G + F+D++ L L F D GV+ DD V SV
Sbjct: 148 YSTNGKITFDDYIACCVKL------RALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
Score = 30.1 bits (68), Expect = 0.59
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSIL-CRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
F + D +++G ++ ++ K L+ + R S + + I Y +G I+ DD
Sbjct: 108 HFISFDTDRSGTVDPQELQKALTTMGFRLSPQA-VNSIAKRYS--TNGKITFDDYIACCV 164
Query: 153 SVYELMGTYAYRAFDSGM 170
+ L T ++R D+
Sbjct: 165 KLRAL--TDSFRRRDTAQ 180
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 35.1 bits (81), Expect = 0.006
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+FN+ D +G L L + +L I+ L DI+ DG ++ +
Sbjct: 19 LFNSHDKTMSGHLTGPQARTILMQS--SLPQAQLASIWNLSDIDQDGKLTAE 68
Score = 27.8 bits (62), Expect = 1.7
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 122 SEEEKLRW--IFCLYDINGDGVISKDDLYNI 150
+ +L++ +F +D G ++ I
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTI 39
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 33.7 bits (78), Expect = 0.008
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDL 147
+EE++ F ++D NGDGVI D+
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEF 30
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 36.8 bits (84), Expect = 0.009
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
FN D KTG ++ EDF L + E + I + D N GV++ + +S
Sbjct: 730 SFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMSR 789
Query: 154 VYE 156
Sbjct: 790 ETA 792
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 35.5 bits (82), Expect = 0.010
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSV 154
+D + TG L FE+F + + +K + I+ +D++ G I +L +
Sbjct: 54 AVMDSDTTGKLGFEEFKYLWNNI------KKWQAIYKQFDVDRSGTIGSSELPGAFEAA 106
Score = 30.5 bits (69), Expect = 0.45
Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
++ D +++G + + E I Y + G + D+ + +
Sbjct: 82 IYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVR 140
Query: 154 VYELMGTYAYRAFD---SGMV 171
+ + A+++ D +G +
Sbjct: 141 LDAM--FRAFKSLDKDGTGQI 159
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 35.4 bits (82), Expect = 0.010
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
++ + + F L D + DG ISK+D+
Sbjct: 52 TQHQVQEFKEAFQLIDQDKDGFISKNDI 79
Score = 28.0 bits (63), Expect = 2.6
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 99 DHNKTGFLNFEDFVKGLSILCRGSEEE 125
+ G ++ + F + IL +G++EE
Sbjct: 171 PIDGNGLIDIKKFAQ---ILTKGAKEE 194
Score = 26.5 bits (59), Expect = 9.6
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 95 FNTLDHNKTGFLNFEDFVKGLSILC-RGSEEEKLRWIFCLYDINGDGVISKDDLYNIVS 152
FN D G E + L+ + S++E + I+G+G+I I++
Sbjct: 132 FNLFD-EGDGKCKEETLKRSLTTWGEKFSQDE-VDQALSEAPIDGNGLIDIKKFAQILT 188
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 33.2 bits (77), Expect = 0.011
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSS 153
VF D NK G L+ ++F + +E + F D++G+G ++ D+ + +
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65
Score = 32.8 bits (76), Expect = 0.013
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 127 LRWIFCLYDINGDGVISKDDL 147
+ +F +D N DG +S D+
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEF 23
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 34.0 bits (78), Expect = 0.013
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
F +L + + F++ + +L +I+ L D + DG ++
Sbjct: 27 QFRSLQPDPSSFISGSVAKNFFTKS--KLSIPELSYIWELSDADCDGALTLP 76
Score = 26.3 bits (58), Expect = 6.9
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 122 SEEEKLRW--IFCLYDINGDGVISKDDLYNI 150
+EE++ + F + IS N
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNF 47
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 32.9 bits (76), Expect = 0.015
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 120 RGSEEEKLRWIFCLYDINGDGVISKDDL 147
R E+ L+ F +D +GDG I+ D+L
Sbjct: 2 RAGLED-LQVAFRAFDQDGDGHITVDEL 28
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 33.5 bits (77), Expect = 0.019
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 122 SEEEK--LRWIFCLYDINGDGVISKDDL 147
+ + + +D+NG+G I L
Sbjct: 27 LPSKLEGFKEKYMEFDLNGNGDIDIMSL 54
Score = 28.1 bits (63), Expect = 1.5
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISK 144
++ + + D N G ++ + L L +L+ + S
Sbjct: 31 LEGFKEK---YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSY 87
Query: 145 DD 146
D
Sbjct: 88 PD 89
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 33.0 bits (76), Expect = 0.023
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDL 147
EE+L+ F ++D + +G IS +L
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASEL 31
Score = 27.2 bits (61), Expect = 2.1
Identities = 12/76 (15%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISK 144
++++ A F D ++ G+++ + + L +E++ + D++GDG ++
Sbjct: 8 EEELKEA---FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 64
Query: 145 DDLYNIVSSVYELMGT 160
++ ++ +V G
Sbjct: 65 EEFVKMMMTVRGGGGG 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.029
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 32/59 (54%)
Query: 235 QAIRPIQSSVPGLKAIRPPAKSMPDLKPLPLRVSEPESNSYHGNGTSGPAVVTAAKVTL 293
QA++ +Q+S L++ + S PA+ A K T+
Sbjct: 20 QALKKLQAS---------------------LKLYADD---------SAPAL--AIKATM 46
Score = 31.1 bits (69), Expect = 0.25
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 226 SVPEGQSSLQAIRPIQSSVPGLKAIR 251
++ + Q+SL+ S P L AI+
Sbjct: 21 ALKKLQASLKLYAD--DSAPAL-AIK 43
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 32.1 bits (73), Expect = 0.091
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 123 EEEKLRWIFCLYDINGDGVISKDDL 147
+ + + +D+N +G I L
Sbjct: 48 KLTAFKEKYMEFDLNNEGEIDLMSL 72
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 33.2 bits (75), Expect = 0.13
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL-------- 147
+D + TG L FE+F + + K + I+ ++ + G I ++L
Sbjct: 781 AVMDSDTTGKLGFEEFKYLWNNIK------KWQGIYKRFETDRSGTIGSNELPGAFEAAG 834
Query: 148 YNIVSSVYELM 158
+++ +Y ++
Sbjct: 835 FHLNQHIYSMI 845
Score = 31.3 bits (70), Expect = 0.41
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 96 NTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL-------- 147
N +D + G L +F + + IF +D++ G +S ++
Sbjct: 584 NLMDRDGNGKLGLVEFNILWNRIR------NYLTIFRKFDLDKSGSMSAYEMRMAIEAAG 637
Query: 148 YNIVSSVYELM 158
+ + +++++
Sbjct: 638 FKLPCQLHQVI 648
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 33.0 bits (74), Expect = 0.13
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 12/131 (9%)
Query: 24 ELVCRVKYNNTLPDIPFDCKFIAYPFESTRRGSGNGKNITFIQQQKDNNCLAGGRCDHKL 83
+ N ++ + + K I CL+ + D
Sbjct: 139 SYAYNLLSLNKNQLGEWEKLYFRLTTVEMEKNKIPVKAIQ--------KCLSKDKDDRAR 190
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVIS 143
K + + D +F+ F K L SE + IF N G I+
Sbjct: 191 ISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALLERSE---IEGIFKELSKNK-GNIT 246
Query: 144 KDDLYNIVSSV 154
+ ++ +
Sbjct: 247 TVMFRDFLNDM 257
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 31.8 bits (72), Expect = 0.13
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 98 LDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
L+ FL+ + + S+ E + + +D+NG+G I L
Sbjct: 24 LEGINKQFLDDPKYSNDEDL---PSKLEAFKVKYMEFDLNGNGDIDIMSL 70
Score = 30.3 bits (68), Expect = 0.43
Identities = 8/61 (13%), Positives = 18/61 (29%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
++ + D N G ++ + L L +L+ + + S
Sbjct: 45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYS 104
Query: 146 D 146
D
Sbjct: 105 D 105
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 30.1 bits (68), Expect = 0.20
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILC 119
+ + A F LD N G +NF++F V + +
Sbjct: 44 QYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAA 82
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 30.4 bits (68), Expect = 0.26
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 81 HKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDG 140
KL +K+ + G LNF++ + L +G + ++ IF YD +GD
Sbjct: 40 VKLKLKKNTVDD--ISESLRQGGGKLNFDELRQDL--KGKGHTDAEIEAIFTKYDQDGDQ 95
Query: 141 VISKDD 146
+++ +
Sbjct: 96 ELTEHE 101
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 31.8 bits (71), Expect = 0.33
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 89 RYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 147
YA +F DH++T L E+ +L + +E + F + + +S + L
Sbjct: 47 GYARKIFRECDHSQTDSLEDEEIETFYKMLTQRAE---IDRAFEEAAGSAE-TLSVERL 101
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 29.8 bits (67), Expect = 0.36
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 85 IKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILCRGSEEEKLR 128
+K + +LD N+ L F ++ + L+ R ++ K+R
Sbjct: 58 LKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEIRKKKDLKIR 104
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 29.4 bits (66), Expect = 0.46
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLY 148
+ ++ TG + D L G + L I+ L D +G GV+SK + +
Sbjct: 16 YYRQVEAGNTGRVLALDAAAFLK--KSGLPDLILGKIWDLADTDGKGVLSKQEFF 68
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 30.9 bits (69), Expect = 0.51
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 61 NITFIQQQKDNNCLAGGRCDHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCR 120
I+ + Q + R D K D I + + LD + +G L ++F + +
Sbjct: 547 EISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI-- 604
Query: 121 GSEEEKLRWIFCLYDINGDGVISKDDL--------YNIVSSVYELM 158
+K + I+ D++ G ++ ++ + + +++++
Sbjct: 605 ----QKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVI 646
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 29.0 bits (65), Expect = 0.55
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILC 119
K + LD N G ++F++F V L++ C
Sbjct: 47 VQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 28.6 bits (64), Expect = 0.71
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDFVK---GLSILC 119
+ LD + G + F+ F GL+I C
Sbjct: 54 IMKDLDQCRDGKVGFQSFFSLIAGLTIAC 82
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding
site, enzyme functio initiative, EFI; HET: SO4; 1.53A
{Proteus mirabilis}
Length = 365
Score = 30.1 bits (67), Expect = 0.80
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 158 MGTYAYRAFDSGMVAQRVEYLFQVSTKGFEMSILCSISIPRSPYSLVPEGGEGAPHLNT 216
+ + + V VE + + +G+ I+ S + GG G +
Sbjct: 257 LDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVFLKQM-WAKNGGNGWGFVPN 314
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 28.2 bits (63), Expect = 1.1
Identities = 5/29 (17%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDFVK---GLSILC 119
+ + LD N+ ++F+++ ++++C
Sbjct: 58 LMSNLDSNRDNEVDFQEYCVFLSCIAMMC 86
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 28.2 bits (63), Expect = 1.2
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVK---GLSILCRGSEEEKLR 128
D + A + LD N G ++F+++ G++ E+ +
Sbjct: 50 DTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITGPIAKLIHEQEQ 97
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 28.3 bits (63), Expect = 1.2
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 82 KLDIKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILC 119
K + K + ++ LD N L+FE+F + L+
Sbjct: 49 KKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWAS 89
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 27.7 bits (62), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFV 112
+K R +F LD N G ++FE+F
Sbjct: 42 LLKGPRTLDDLFQELDKNGDGEVSFEEFQ 70
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILC 119
K + N LD NK ++F +F V L++ C
Sbjct: 48 SQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALTVAC 86
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.8 bits (62), Expect = 1.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDF---VKGLSILC 119
V TLD N G +F++F V ++ C
Sbjct: 57 VMETLDSNGDGECDFQEFMAFVAMITTAC 85
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.8 bits (62), Expect = 1.4
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 82 KLDIKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILC 119
D K Y VF D N+ ++F +F + ++
Sbjct: 45 ACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATDY 85
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.8 bits (62), Expect = 1.4
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDF---VKGLSILC 119
+ +LD N ++F+++ + L +
Sbjct: 55 LMKSLDKNSDQEIDFKEYSVFLTMLCMAY 83
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like
helicases, viral RNA detection, LGP2/dsRNA complex,
ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB:
2w4r_A 2rqa_A
Length = 145
Score = 28.5 bits (63), Expect = 1.6
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 84 DIKQIRYAHYV---------FNTLDHNKTGFLNFEDFVKGLSILCR 120
D++++ H+V +N F+D+ G I CR
Sbjct: 28 DLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR 73
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 27.8 bits (62), Expect = 1.6
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDFVK---GLSILC 119
+IK +F LD N+ ++F++F+
Sbjct: 50 NIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAA 88
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 28.0 bits (62), Expect = 1.6
Identities = 5/29 (17%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDFVK---GLSILC 119
+ + LD N+ ++F+++ ++++C
Sbjct: 70 LMSNLDSNRDNEVDFQEYCVFLSCIAMMC 98
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 27.9 bits (62), Expect = 1.7
Identities = 4/29 (13%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDFVK---GLSILC 119
+ + LD N+ ++F+++ ++++
Sbjct: 61 LMSNLDSNRDNEVDFQEYCVFLSSIAMMS 89
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.9 bits (62), Expect = 1.7
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 84 DIKQIRYAHYVFNTLDHNKTGFLNFEDF---VKGLSILC 119
+ K + LD + G L+F++F + GL+I C
Sbjct: 51 NQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAIAC 89
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic
region; mixed alpha-beta structure, structural
genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Length = 97
Score = 27.4 bits (61), Expect = 1.9
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 5 CFPVTIIRTLK-LSNMINGSELVCRVKYNNTLPDIPFDCKFIAYPFESTRRGSG 57
C P + TL+ + + G L ++ +IP D + Y ++
Sbjct: 37 C-PYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGP 89
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 27.5 bits (61), Expect = 2.0
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDF---VKGLSILC 119
+ LD N ++F +F V ++ C
Sbjct: 57 LLKDLDANGDAQVDFSEFIVFVAAITSAC 85
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 94 VFNTLDHNKTGFLNFEDFVK---GLSILC 119
+ LD NK ++F ++V+ L + C
Sbjct: 58 FMSVLDTNKDCEVDFVEYVRSLACLCLYC 86
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics;
NMR {Thermotoga maritima} SCOP: d.68.3.3
Length = 98
Score = 27.0 bits (60), Expect = 2.9
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 5 CFPVTIIRTLK-LSNMINGSELVCRVKYNNTLPDIPFDCKFIAYPFESTRR 54
C PV + T + L NM G L + Y + IP K + +
Sbjct: 36 C-PVPDVETKRALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIEE 85
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 27.0 bits (60), Expect = 2.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 95 FNTLDHNKTGFLNFEDF---VKGLSILC 119
LD NK +NF+++ + L+++
Sbjct: 57 MEDLDRNKDQEVNFQEYVTFLGALALIY 84
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 26.7 bits (59), Expect = 3.6
Identities = 4/28 (14%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 95 FNTLDHNKTGFLNFEDF---VKGLSILC 119
+LD N ++F+++ + ++++
Sbjct: 60 MGSLDENSDQQVDFQEYAVFLALITVMS 87
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 26.7 bits (59), Expect = 4.0
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 KQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKD 145
+ +F++L GFL+ + L + L ++ L DI+ DG++ +D
Sbjct: 12 EDKAKYDAIFDSLS-PVNGFLSGDKVKPVLL--NSKLPVDILGRVWELSDIDHDGMLDRD 68
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 28.1 bits (62), Expect = 4.0
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 80 DHKLDIKQIRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGD 139
+ ++ Y+ N T + D V+ + L C D +
Sbjct: 125 PFRFELFA-MIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHCDPLCE 183
Query: 140 GVISKDDLYNIVSSVYELMGTYAYRAFDSGMVA 172
+ + IV +E G +D G ++
Sbjct: 184 NFLDTGERMWIVD--WEYSG-MNDPLWDLGDLS 213
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 25.7 bits (57), Expect = 5.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 134 YDINGDGVISKDDL 147
D+N DGVI+ DD
Sbjct: 40 ADLNNDGVINSDDA 53
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 26.4 bits (58), Expect = 8.5
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 49 FESTRRGSGNGKNITFIQQQKDNNCLAGGRC-DHKLDIKQIRYAHYVFNTLDHNKTGFLN 107
F+ + G + + ++ + L G L + +RY+ + G ++
Sbjct: 82 FQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS---------DSVGRVS 132
Query: 108 FEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGV-ISKDDLYNIV 151
F V L L E + F +G G+ +++ + ++V
Sbjct: 133 FPSLVCFLMRL------EAMAKTFRNLSKDGKGLYLTEMEWMSLV 171
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 26.0 bits (57), Expect = 8.6
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 94 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 146
F++L +GF+ + G + L I+ L D+N DG + + +
Sbjct: 38 QFHSLK-PISGFITGDQARNFFF--QSGLPQPVLAQIWALADMNNDGRMDQVE 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,513,502
Number of extensions: 261623
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 374
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)