BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy667
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 31/242 (12%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P WDWR K DQ CGSCWAFS+ G +EGQ
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGN-----------------------VEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT---HQAGLESEKDYPYKNANGE 268
+ + G L+ S+ +L++C K C G PS Y+ + GLE+E DY Y+ G
Sbjct: 38 WFLNQGTLLSLSEQELLDCDKMDKACMGGL--PSNAYSAIKNLGGLETEDDYSYQ---GH 92
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
C + K K++ + + L K GP+SV +N+ + Y R
Sbjct: 93 MQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRP 152
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
CSP+ + HAVLLVGYG++ ++P+W ++NSWG ++G++ + RG+ ACG+ +A A
Sbjct: 153 LCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212
Query: 389 ID 390
+D
Sbjct: 213 VD 214
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 119/246 (48%), Gaps = 44/246 (17%)
Query: 153 PDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWRKK N P +Q +CGSCW FS G LE
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGA-----------------------LESA 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQCS--GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE 268
AI TGK++ ++ QLV+CA+ + GC G + EY + G+ E YPYK G+
Sbjct: 39 VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK---GQ 95
Query: 269 KFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSV---LLNSDLIHD---YNG 320
C + K F KD + N E M + + Y P+S + N L++ Y+
Sbjct: 96 DDHCKFQPDKAIAFV-KDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS 154
Query: 321 TPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGI 380
T K +P + HAVL VGYG+++ IPYW+V+NSWGP G+F IERG N CG+
Sbjct: 155 TSCHK-----TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 209
Query: 381 EQIAGY 386
A Y
Sbjct: 210 AACASY 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 29/244 (11%)
Query: 149 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGML 208
+G PD+ D+RKK P +Q CGSCWAFS G L
Sbjct: 97 EGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------AL 133
Query: 209 EGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANG 267
EGQ KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G
Sbjct: 134 EGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---G 190
Query: 268 EKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN 326
++ C Y+ + K G + + +K+ + + GP+SV +++ L +
Sbjct: 191 QEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY 250
Query: 327 DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 385
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A
Sbjct: 251 DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 310
Query: 386 YATI 389
+ +
Sbjct: 311 FPKM 314
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 29/243 (11%)
Query: 150 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLE 209
G PD+ D+RKK P +Q CGSCWAFS G LE
Sbjct: 1 GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALE 37
Query: 210 GQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGE 268
GQ KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G+
Sbjct: 38 GQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQ 94
Query: 269 KFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND 327
+ C Y+ + K G + + +K+ + + GP+SV +++ L + D
Sbjct: 95 EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD 154
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 386
E+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A +
Sbjct: 155 ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASF 214
Query: 387 ATI 389
+
Sbjct: 215 PKM 217
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 29/241 (12%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
PD+ D+RKK P +Q CGSCWAFS G LEGQ
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKF 270
KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G+
Sbjct: 38 LKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDE 94
Query: 271 KCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
C Y+ + K G + + +K+ + + GP+SV +++ L + DE
Sbjct: 95 SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDEN 154
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYAT 388
CS +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A +
Sbjct: 155 CSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFPK 214
Query: 389 I 389
+
Sbjct: 215 M 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 29/240 (12%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
PD+ D+RKK P +Q CGSCWAFS G LEGQ
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALEGQL 37
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFK 271
KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G++
Sbjct: 38 KKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEES 94
Query: 272 CAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
C Y+ + K G + + +K+ + + GP+SV +++ L + DE+C
Sbjct: 95 CMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC 154
Query: 331 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 155 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 29/241 (12%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
PD+ D+RKK P +Q CGSCWAFS G LEGQ
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKF 270
KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G++
Sbjct: 38 LKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEE 94
Query: 271 KCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
C Y+ + K G + + +K+ + + GP+SV +++ L + DE+
Sbjct: 95 SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES 154
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYAT 388
C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A +
Sbjct: 155 CNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPK 214
Query: 389 I 389
+
Sbjct: 215 M 215
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 30/241 (12%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P A DWR+K P DQ CGSCWAFS G +EGQ
Sbjct: 1 APAAVDWREKGAVTPVKDQGQCGSCWAFSTIGN-----------------------IEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY---THQAGLESEKDYPYKNANGE 268
+ + LV S+ LV C GC G + + + ++ + +E YPY + NGE
Sbjct: 38 WQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGE 97
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
+ +C + ++ + + L + GPL++ +++ DYNG +
Sbjct: 98 QPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILT---- 153
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
+C+ L H VLLVGY N PYW+++NSW + ++G+ +IE+G N C + Q A
Sbjct: 154 SCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
Query: 389 I 389
+
Sbjct: 214 V 214
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
VPD DWR+ DQ CGS WAFS G +EGQ
Sbjct: 92 VPDKIDWRESGYVTEVKDQGNCGSGWAFSTTG-----------------------TMEGQ 128
Query: 212 YAIKTGKLVEFSKSQLVECAKQC--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEK 269
Y + FS+ QLV+C++ +GC G E + +Y Q GLE+E YPY G+
Sbjct: 129 YMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEGQ- 187
Query: 270 FKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN 326
C Y+K V TG +H +K ++ GP +V ++ SD + +G
Sbjct: 188 --CRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQ 242
Query: 327 DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+TCSP + HAVL VGYG Q YW+V+NSWG + G+ ++ R N CGI +A
Sbjct: 243 SQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 29/241 (12%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
PD+ D+R+K P +Q CGSCWAFS G LEGQ
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKF 270
KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G++
Sbjct: 38 LKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEE 94
Query: 271 KCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
C Y+ + K G + + +K+ + + GP+SV +++ L + DE+
Sbjct: 95 SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES 154
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYAT 388
C+ +L HAVL VGYG+ +W+++NSWG G+ K+ R NNACGI +A +
Sbjct: 155 CNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPK 214
Query: 389 I 389
+
Sbjct: 215 M 215
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 29/239 (12%)
Query: 154 DAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYA 213
D+ D+RKK P +Q CGSCWAFS G LEGQ
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALEGQLK 37
Query: 214 IKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKC 272
KTGKL+ S LV+C + GC G + + +Y + G++SE YPY G++ C
Sbjct: 38 KKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESC 94
Query: 273 AYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS 331
Y+ + K G + + +K+ + + GP+SV +++ L + DE+C+
Sbjct: 95 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 154
Query: 332 PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
+L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 155 SDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 150/345 (43%), Gaps = 50/345 (14%)
Query: 64 ILETFKAFIVKRGRQYANDEE-------IKERFEYFKQDGHKKHE-----RYGTSEFSDR 111
+ E ++ F R Y N +E +++ E F++ K + G + F+D
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 112 SPEEILCKT-GFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQ 170
+PEE+ T G ++ + + P ++DWR + + P +Q
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR---YPASFDWRDQGMVSPVKNQ 134
Query: 171 AACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVE--FSKSQLV 228
+CGS WAFS G +E Q I G + S+ QLV
Sbjct: 135 GSCGSSWAFSSTGA-----------------------IESQMKIANGAGYDSSVSEQQLV 171
Query: 229 ECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKD 286
+C GC G + + Y Q G++SE YPY+ A+G C YD ++V +G
Sbjct: 172 DCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYV 228
Query: 287 FLHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 345
+L + ++ GP++V ++D Y+G + TC HAVL+VGYG
Sbjct: 229 YLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYG 286
Query: 346 KQDNIPYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATI 389
++ YWLV+NSWG +G+FKI R NN CGI +A T+
Sbjct: 287 NENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P + DWRKK P +Q CGSCWAFS G LEGQ
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGE 268
KTGKLV S+ LV+C++ GC+G F + +Y + GL+SE+ YPY +
Sbjct: 38 MFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-- 95
Query: 269 KFKCAY-DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRK 325
C Y ++ V TG + + + K + GP+SV +++ Y +
Sbjct: 96 -EICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFE 154
Query: 326 NDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 380
D CS +L H VL+VGYG DN YWLV+NSWGP G+ KI + NN CGI
Sbjct: 155 PD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212
Query: 381 EQIAGYATI 389
A Y +
Sbjct: 213 ATAASYPNV 221
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 110/238 (46%), Gaps = 29/238 (12%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
PD+ D+RKK P +Q CGSCWAFS G LEGQ
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVG-----------------------ALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKF 270
TG L+ + LV+C + GC G + + +Y + G++SE YPY G+
Sbjct: 38 LKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDE 94
Query: 271 KCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
C Y+ + K G + +K+ + GP+SV +++ L + DE
Sbjct: 95 SCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDEN 154
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 386
CS L HAVL VGYG Q +W+++NSWG + G+ + R NNACGI +A +
Sbjct: 155 CSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 37/250 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P++WDW KK V Q CGS WAFS G +E
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATG-----------------------AIEAA 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE-- 268
+AI TG LV S+ +L++C + GC + S E+ G+ SE DYPYK +G+
Sbjct: 39 HAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCK 98
Query: 269 ----KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 324
+ K D V++ + + S +L + P+SV +++ H Y+G I
Sbjct: 99 ANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ--PISVSIDAKDFHFYSGG-IY 155
Query: 325 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGI 380
SPY + H VL+VGYG +D + YW+ +NSWG +G+ +I+R GN CG+
Sbjct: 156 DGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGM 215
Query: 381 EQIAGYATID 390
A Y I+
Sbjct: 216 NYFASYPIIE 225
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 36/245 (14%)
Query: 151 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEG 210
P+ + DWR N DQ CGS W+FS G +EG
Sbjct: 115 PLAASVDWRS-NAVSEVKDQGQCGSSWSFSTTG-----------------------AVEG 150
Query: 211 QYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE 268
Q A++ G+L S+ L++C+ +GCDG + + + Y H G+ SE YPY+ A G+
Sbjct: 151 QLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYE-AQGD 209
Query: 269 KFKCAYDKSK-VKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKN 326
C +D S+ V +G L ++ + + GP++V ++ +D + Y+G
Sbjct: 210 Y--CRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY-- 265
Query: 327 DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIA 384
D+TC+ DL H VL+VGYG + YW+++NSWG + G+++ R GNN CGI A
Sbjct: 266 DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAA 324
Query: 385 GYATI 389
Y +
Sbjct: 325 SYPAL 329
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 116/249 (46%), Gaps = 39/249 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P + DWRKK P +Q CGS WAFS G LEGQ
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGE 268
KTGKLV S+ LV+C++ GC+G F + +Y + GL+SE+ YPY +
Sbjct: 38 MFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-- 95
Query: 269 KFKCAY-DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRK 325
C Y ++ V TG + + + K + GP+SV +++ Y +
Sbjct: 96 -EICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFE 154
Query: 326 NDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 380
D CS +L H VL+VGYG DN YWLV+NSWGP G+ KI + NN CGI
Sbjct: 155 PD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212
Query: 381 EQIAGYATI 389
A Y +
Sbjct: 213 ATAASYPNV 221
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 39 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 98
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 99 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 154
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 155 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 213
Query: 385 GYATI 389
Y I
Sbjct: 214 SYPEI 218
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 40
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 41 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 100
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 101 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 156
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 157 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 215
Query: 385 GYATI 389
Y I
Sbjct: 216 SYPEI 220
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 97
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 98 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 97
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 98 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 39 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 98
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 99 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 154
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 155 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 213
Query: 385 GYATI 389
Y I
Sbjct: 214 SYPEI 218
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 97
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 98 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 97
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + + L + + +K+ + GP+SV +++ +
Sbjct: 98 ---KCQYD-SKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG ++G+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 115/250 (46%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGSCWAFS G LEGQ
Sbjct: 39 APRSVDWREKGYVTPVKNQGQCGSCWAFSAT-----------------------GALEGQ 75
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 76 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 132
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 133 EESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 191
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 192 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 248
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 249 IASAASYPTV 258
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 115/250 (46%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGSCWAFS G LEGQ
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSCWAFSAT-----------------------GALEGQ 38
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 39 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 95
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 96 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 154
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 155 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 211
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 212 IASAASYPTV 221
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 115/250 (46%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGSCWAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 154 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 210
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 211 IASAASYPTV 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 115/250 (46%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGSCWAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 154 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 210
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 211 IASAASYPTV 220
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+ WAFS G LE Q
Sbjct: 99 LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVG-----------------------ALEAQ 135
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 136 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 195
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 196 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 251
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 252 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 310
Query: 385 GYATI 389
Y I
Sbjct: 311 SYPEI 315
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+ WAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD- 96
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 97 --LKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 97
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD S + T + + L + + +K+ + GP+SV +++ +
Sbjct: 98 ---KCQYD-SAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG ++G+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+ WAFS G LE Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVG-----------------------ALEAQ 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 39 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 98
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 99 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 154
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 155 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 213
Query: 385 GYATI 389
Y I
Sbjct: 214 SYPEI 218
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+ WAFS G LE Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVG-----------------------ALEAQ 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 38 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 97
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 98 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 153
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 154 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 212
Query: 385 GYATI 389
Y I
Sbjct: 213 SYPEI 217
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+ WAFS G LE Q
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVG-----------------------ALEAQ 39
Query: 212 YAIKTGKLVEFSKSQLVECAKQ---CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + GC+G F + +Y G++S+ YPYK +
Sbjct: 40 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 99
Query: 268 EKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRK 325
KC YD SK + T + L + + +K+ + GP+SV +++ +
Sbjct: 100 ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 155
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 156 YEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP 214
Query: 385 GYATI 389
Y I
Sbjct: 215 SYPEI 219
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 97 APRSVDWREKGYVTPVKNQGQCGSXWAFSAT-----------------------GALEGQ 133
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 134 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 190
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 191 EESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 249
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 250 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 306
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 307 IASAASYPTV 316
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 154 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 210
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 211 IASAASYPTV 220
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 2 APRSVDWREKGYVTPVKNQGQCGSAWAFSAT-----------------------GALEGQ 38
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 39 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 95
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 96 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 154
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 155 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 211
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 212 IASAASYPTV 221
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CG
Sbjct: 154 PD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 210
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 211 IASAASYPTV 220
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P A DWR + DQ CGSCWAFS G +E Q+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGN-----------------------VECQW 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEK 269
+ L S+ LV C K SGC G + E+ Q + +E YPY + G
Sbjct: 39 FLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGIS 98
Query: 270 FKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
C V TG L + ++ + L GP++V +++ Y G +
Sbjct: 99 PPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVMT---- 153
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 389 I 389
+
Sbjct: 214 V 214
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 37/240 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWRKK P +Q CGSCWAFS + + I+Q
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFS--------TVSTVESINQ------------- 39
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKF 270
I+TG L+ S+ QLV+C K+ GC G F + +Y G+++E +YPYK G
Sbjct: 40 --IRTGNLISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP-- 95
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
C K V++ K H N + K + + +++ +S Y T
Sbjct: 96 -CRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGT- 153
Query: 331 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 388
L H V++VGY K YW+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 154 ---KLNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 93 APRSVDWREKGYVTPVKNQGQCGSSWAFSAT-----------------------GALEGQ 129
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 130 MFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 186
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 187 EESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 245
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + D YWLV+NSWG G+ K+ + N CG
Sbjct: 246 PD---CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 302
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 303 IASAASYPTV 312
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 37/240 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR K P +Q CGSCWAFS + + I+Q
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFST--------VTTVESINQ------------- 39
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKF 270
I+TG L+ S+ QLV+C+K+ GC G +F+ + +Y G+++E +YPYK G
Sbjct: 40 --IRTGNLISLSEQQLVDCSKKNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP-- 95
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
C K V++ K N + + + +++ +S Y G T
Sbjct: 96 -CRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGT- 153
Query: 331 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 388
L H V++VGYGK YW+VRNSWG ++G+ +++R G CGI ++ Y T
Sbjct: 154 ---KLNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P A DWR + DQ CGSCWAFS G +E Q+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGN-----------------------VECQW 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEK 269
+ L S+ LV C K SGC G + E+ Q + +E YPY + G
Sbjct: 39 FLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGIS 98
Query: 270 FKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
C V TG L + ++ + L GP++V +++ Y G +
Sbjct: 99 PPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVMT---- 153
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 389 I 389
+
Sbjct: 214 V 214
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 114/250 (45%), Gaps = 42/250 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACG 379
+ CS D+ H VL+VGYG + D+ YWLV+NSWG G+ K+ + N CG
Sbjct: 154 PD---CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 210
Query: 380 IEQIAGYATI 389
I A Y T+
Sbjct: 211 IASAASYPTV 220
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P A DWR + DQ CGSCWAFS G +E Q+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGN-----------------------VECQW 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEK 269
+ L ++ LV C K SGC G + E+ Q + +E YPY + G
Sbjct: 39 FLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGIS 98
Query: 270 FKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
C V TG L + ++ + L GP++V +++ Y G +
Sbjct: 99 PPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVMT---- 153
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 389 I 389
+
Sbjct: 214 V 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P A DWR + DQ CGSCWAFS G +E Q+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGN-----------------------VECQW 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEK 269
+ L ++ LV C K SGC G + E+ Q + +E YPY + G
Sbjct: 39 FLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGIS 98
Query: 270 FKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
C V TG L + ++ + L GP++V +++ Y G +
Sbjct: 99 PPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVMT---- 153
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
+C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A A
Sbjct: 154 SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 389 I 389
+
Sbjct: 214 V 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 43/246 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD DWR DQ CGSCWAFS +EG
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAA-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE 268
I TG L+ S+ +LV+C + GCDG F ++ + G+ +E +YPY E
Sbjct: 38 NKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AE 94
Query: 269 KFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNS---DLIHDYNGTPI 323
+ +C D + K + + + +N ++ + Y P+SV L + + H +G
Sbjct: 95 EGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFT 153
Query: 324 RKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGI 380
C + HAV +VGYG + I YW+V+NSWG +EG+ +I+R G CGI
Sbjct: 154 GP----CGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
Query: 381 EQIAGY 386
+ A Y
Sbjct: 209 AKKASY 214
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 51/240 (21%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P++ DWR+K P +Q CGSCWAFS +EG
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVA-----------------------TIEGIN 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC 272
I TG+L+ S+ +L++C ++ GCDG + S++Y G+ +E++YPY+ G +C
Sbjct: 39 KIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RC 95
Query: 273 -AYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNS--DLIHDYNG----TPIR 324
A DK K++ TG ++ N ++ + + P+SV+ +S Y G P
Sbjct: 96 RAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCG 154
Query: 325 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 380
N + HAV VGYGK Y L++NSWGP ++G+ +I+R + CG+
Sbjct: 155 TNTD--------HAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 43/250 (17%)
Query: 152 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGML 208
+P++WDWR N P +Q +CGSC++F+ G ML
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLG-----------------------ML 242
Query: 209 EGQYAIKT--GKLVEFSKSQLVECAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNA 265
E + I T + S ++V C+ GCDG F + + +Y G+ E +PY
Sbjct: 243 EARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTAT 302
Query: 266 NGEKFKCAYDKSKVKLFTGKDFLHFN-----GSETMKKILYKYGPLSVL--LNSDLIHDY 318
+ C ++ ++ ++ + + MK L K+GP++V ++ D +H +
Sbjct: 303 DA---PCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYH 359
Query: 319 NGTPIRKN-DETCSPYDL-GHAVLLVGYGKQ--DNIPYWLVRNSWGPIGPDEGFFKIERG 374
+G + +P++L HAVLLVGYGK + YW+V+NSWG + G+F+I RG
Sbjct: 360 SGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG 419
Query: 375 NNACGIEQIA 384
+ C IE IA
Sbjct: 420 TDECAIESIA 429
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 110/239 (46%), Gaps = 45/239 (18%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P + DWR K P +Q ACGS WAFS +EG
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIA-----------------------TVEGIN 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC 272
I TG L+E S+ +LV+C K GC G + S++Y G+ + K YPY+ +++KC
Sbjct: 39 KIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQ---AKQYKC 95
Query: 273 -AYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN---- 326
A DK K+ TG + N + L PLSVL+ + G P +
Sbjct: 96 RATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVLVEA------GGKPFQLYKSGV 148
Query: 327 -DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGI 380
D C L HAV VGYG D Y +++NSWGP ++G+ +++R GN+ CG+
Sbjct: 149 FDGPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 53/259 (20%)
Query: 152 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGML 208
+P +WDWR N P +QA+CGSC++F+ G ML
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMG-----------------------ML 243
Query: 209 EGQYAIKT--GKLVEFSKSQLVECAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNA 265
E + I T + S ++V C++ GC+G F + + +Y GL E +PY
Sbjct: 244 EARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY--- 300
Query: 266 NGEKFKCAYDKSKVKLFTGKDFLHFNGS-------ETMKKILYKYGPLSVLLN--SDLIH 316
G C + + ++ + H+ G MK L +GP++V D +H
Sbjct: 301 TGTDSPCKMKEDCFRYYSSE--YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 358
Query: 317 ----DYNGTPIRKNDETCSPYDL-GHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFF 369
Y+ T +R + +P++L HAVLLVGYG + YW+V+NSWG + G+F
Sbjct: 359 YKKGIYHHTGLR---DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYF 415
Query: 370 KIERGNNACGIEQIAGYAT 388
+I RG + C IE IA AT
Sbjct: 416 RIRRGTDECAIESIAVAAT 434
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 112/249 (44%), Gaps = 48/249 (19%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
VP + DWRKK DQ CGSCWAFS ++ +EG
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFS--------------------TIV---AVEGI 38
Query: 212 YAIKTGKLVEFSKSQLVEC-AKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEK 269
IKT KLV S+ +LV+C Q GC+G + + E+ Q G+ +E +YPY+ +G
Sbjct: 39 NQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG-- 96
Query: 270 FKCAYDKSKVKLFT--GKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND 327
C K + G + + N + K + P+SV + D G+ +
Sbjct: 97 -TCDVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAI------DAGGSDFQFYS 148
Query: 328 E-----TCSPYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNA 377
E +C +L H V +VGYG D YW V+NSWGP ++G+ ++ERG
Sbjct: 149 EGVFTGSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGL 207
Query: 378 CGIEQIAGY 386
CGI A Y
Sbjct: 208 CGIAMEASY 216
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+ P +Q CGSCWAFS +EG
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTV-----------------------AAVEGI 39
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKF 270
I TG L+ S+ QLV+C GC G + P+ ++ + G+ SE+ YPY+ +G
Sbjct: 40 NQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG-IC 98
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
+ V + + ++ N K + + P+SV +++ D+ +C
Sbjct: 99 NSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ--PVSVTMDA-AGRDFQLYRSGIFTGSC 155
Query: 331 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 386
+ HA+ +VGYG +++ +W+V+NSWG + G+ + ER + CGI + A Y
Sbjct: 156 N-ISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 109/246 (44%), Gaps = 43/246 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD DWR DQ CGS WAFS +EG
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAA-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE 268
I TG L+ S+ +LV+C + GCDG F ++ + G+ +E +YPY E
Sbjct: 38 NKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AE 94
Query: 269 KFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNS---DLIHDYNGTPI 323
+ +C D + K + + + +N ++ + Y P+SV L + + H +G
Sbjct: 95 EGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFT 153
Query: 324 RKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGI 380
C + HAV +VGYG + I YW+V+NSWG +EG+ +I+R G CGI
Sbjct: 154 GP----CGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
Query: 381 EQIAGY 386
+ A Y
Sbjct: 209 AKKASY 214
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 109/249 (43%), Gaps = 45/249 (18%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P + DWR+K DQ CGSCWAFS +EG
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVS-----------------------VEGI 40
Query: 212 YAIKTGKLVEFSKSQLVEC-AKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG-- 267
AI+TG LV S+ +L++C GC G + + EY + GL +E YPY+ A G
Sbjct: 41 NAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTC 100
Query: 268 EKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND 327
+ A + V G + N E + + + P+SV + + +G
Sbjct: 101 NVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAVEA------SGKAFMFYS 153
Query: 328 E-----TCSPYDLGHAVLLVGYG-KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA---- 377
E C +L H V +VGYG +D YW V+NSWGP ++G+ ++E+ + A
Sbjct: 154 EGVFTGECG-TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGL 212
Query: 378 CGIEQIAGY 386
CGI A Y
Sbjct: 213 CGIAMEASY 221
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 66/338 (19%)
Query: 62 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 113
E +++ F+++++K + Y N +E RFE FK + +KK+ Y G + F+D S
Sbjct: 60 ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSN 119
Query: 114 EEILCK-TG-----FKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPA 167
+E K TG + +E +YE ++ D D +P+ DWR+K P
Sbjct: 120 DEFKEKYTGSIAGNYTTTELSYEEVLND------------GDVNIPEYVDWRQKGAVTPV 167
Query: 168 GDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL 227
+Q +CGS WAFS +E I+TG L E+S+ +L
Sbjct: 168 KNQGSCGSAWAFSAVS-----------------------TIESIIKIRTGNLNEYSEQEL 204
Query: 228 VECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--K 285
++C ++ GC+G + +++ Q G+ YPY+ +++ + +K T +
Sbjct: 205 LDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVR 262
Query: 286 DFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVG 343
+N + I + P+SV+L + D+ + + P + HAV VG
Sbjct: 263 QVQPYNEGALLYSIANQ--PVSVVLEA-AGKDFQ---LYRGGIFVGPCGNKVDHAVAAVG 316
Query: 344 YGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
YG Y L+RNSWG + G+ +I+RG N+ G+
Sbjct: 317 YGPN----YILIRNSWGTGWGENGYIRIKRGTGNSYGV 350
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 42/246 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P DWR K +Q CGSCWAFS +E
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAA-----------------------VESI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKF 270
I+TG+L+ S+ +LV+C GC+G + + +Y G++++++YPY G
Sbjct: 38 NKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS-- 95
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
C + +V G + N ++ + P+SV + + G P +
Sbjct: 96 -CKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEAA------GAPFQHYSSGI 147
Query: 331 SPYDLG----HAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 382
G H V++VGYG Q YW+VRNSWG ++G+ +ER + CGI Q
Sbjct: 148 FTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQ 207
Query: 383 IAGYAT 388
+ Y T
Sbjct: 208 LPSYPT 213
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 39/241 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWRKK P +Q +CGSCWAFS + + I+Q
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFST--------VSTVESINQ------------- 39
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKF 270
I+TG L+ S+ +LV+C K+ GC G F + +Y + G++++ +YPYK G
Sbjct: 40 --IRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP-- 95
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKK-ILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
SKV G + + F +K+ + + +++ +S Y+ T
Sbjct: 96 --CQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT 153
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYA 387
L H V +VGY Q N YW+VRNSWG ++G+ ++ R G CGI ++ Y
Sbjct: 154 ----KLNHGVTIVGY--QAN--YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
Query: 388 T 388
T
Sbjct: 206 T 206
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 149/343 (43%), Gaps = 54/343 (15%)
Query: 62 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 113
E +++ F ++++ + Y N +E RFE FK + +KK+ Y G +EF+D S
Sbjct: 16 ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSN 75
Query: 114 EEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAAC 173
+E K + T E+ + +P+ DWRKK P Q +C
Sbjct: 76 DEFNEKYVGSLIDATIEQSYDEEFINEDIVN-------LPENVDWRKKGAVTPVRHQGSC 128
Query: 174 GSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQ 233
GSCWAFS +EG I+TGKLVE S+ +LV+C ++
Sbjct: 129 GSCWAFSAVA-----------------------TVEGINKIRTGKLVELSEQELVDCERR 165
Query: 234 CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 293
GC G + ++EY + G+ YPYK G VK +G + N
Sbjct: 166 SHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNE 224
Query: 294 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDN 349
+ + K P+SV++ S G P + E + AV VGYGK
Sbjct: 225 GNLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGG 277
Query: 350 IPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 388
Y L++NSWG ++G+ +I+R GN+ CG+ + + Y T
Sbjct: 278 KGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 320
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 113/247 (45%), Gaps = 39/247 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CG+ +AFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGA-----------------------LEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---AT 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDVGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFS 153
Query: 325 KNDETCSPYDLGHAVLLVGYG-KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 382
+ + S L HA+L+VGYG +N YWLV+NSWG G+ K+ + N CGI
Sbjct: 154 SDCSSSS---LNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIAS 210
Query: 383 IAGYATI 389
A Y T+
Sbjct: 211 AASYPTV 217
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 100/245 (40%), Gaps = 35/245 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWRKK DQ ACG CWAF G +EG
Sbjct: 1 APASIDWRKKGAVTSVKDQGACGMCWAFGAT-----------------------GAIEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKF 270
AI TG+L+ S+ Q+V+C G + + + G+ S+ +YPY +G
Sbjct: 38 DAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDG--- 94
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
C +K G + + S + + + +++ +S Y G I +C
Sbjct: 95 TCDLNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAG-SSC 153
Query: 331 S--PYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERGNN----ACGIEQI 383
S P + H VL+VGYG N YW+V+NSWG +G+ I R N C I+
Sbjct: 154 SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAW 213
Query: 384 AGYAT 388
Y T
Sbjct: 214 GSYPT 218
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 41/245 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P DWR Q CG CWAFS +EG
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIAT-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE 268
I TG L+ S+ +L++C + GC+G + ++ + G+ +E++YPY +GE
Sbjct: 38 NKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE 97
Query: 269 KFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIR 324
C D K T + + +N ++ + Y P+SV L++ D Y+
Sbjct: 98 ---CNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFT 153
Query: 325 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIE 381
T + HAV +VGYG + I YW+V+NSW +EG+ +I R G CGI
Sbjct: 154 GPCGTA----IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIA 209
Query: 382 QIAGY 386
+ Y
Sbjct: 210 TMPSY 214
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P DWR Q CG WAFS +EG
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIAT-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE 268
I +G L+ S+ +L++C + GCDG + ++ + G+ +E++YPY +G+
Sbjct: 38 NKITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGD 97
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKN 326
D+ V + T ++ + N E + Y P+SV L++ D Y
Sbjct: 98 CDVALQDQKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGP 155
Query: 327 DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQI 383
T + HA+++VGYG + + YW+V+NSW +EG+ +I R G CGI +
Sbjct: 156 CGTA----VDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATM 211
Query: 384 AGY 386
Y
Sbjct: 212 PSY 214
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 33/214 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P DWR + P DQ CGSCWAFS G LEG
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGA-----------------------LEGA 43
Query: 212 YAIKTGKLVEFSKSQLVEC--AKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE 268
+ KTGKLV S+ +L++C A+ C G + +Y G+ SE YPY A E
Sbjct: 44 HCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL-ARDE 102
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 328
+ + + VK+ KD SE K P+S+ + +D + + D
Sbjct: 103 ECRAQSCEKVVKILGFKDVPRR--SEAAMKAALAKSPVSIAIEADQM-PFQFYHEGVFDA 159
Query: 329 TCSPYDLGHAVLLVGYG--KQDNIPYWLVRNSWG 360
+C DL H VLLVGYG K+ +W+++NSWG
Sbjct: 160 SCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWG 192
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 99/235 (42%), Gaps = 33/235 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
VP D R P Q CGSCWAFS + L Y N
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRN----------------- 53
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
++ S+ +LV+CA Q GC G IEY Q G+ E+ YPY + +
Sbjct: 54 ------TSLDLSEQELVDCASQ-HGCHGDTIPRGIEYIQQNGVVEERSYPYV---AREQR 103
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYK-YGPLSVLLN-SDL--IHDYNGTPIRKND 327
C S+ + ++ + +++ L + + ++V++ DL Y+G I ++D
Sbjct: 104 CRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHD 163
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 382
P HAV +VGYG YW+VRNSW D G+ + GNN IEQ
Sbjct: 164 NGYQPNY--HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQ 216
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWRKK P Q +CGSCWAFS +EG
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVA-----------------------TVEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TGKLVE S+ +LV+C ++ GC G + ++EY + G+ YPYK G
Sbjct: 38 NKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRA 97
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND---- 327
VK +G + N + + K P+SV++ S G P +
Sbjct: 98 KQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIF 149
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQI 383
E + HAV VGYGK Y L++NSWG ++G+ +I+R GN+ CG+ +
Sbjct: 150 EGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKS 209
Query: 384 AGYAT 388
+ Y T
Sbjct: 210 SYYPT 214
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 109/243 (44%), Gaps = 35/243 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWRKK P Q +CGSCWAFS +EG
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVA-----------------------TVEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TGKLVE S+ +LV+C ++ GC G + ++EY + G+ YPYK G
Sbjct: 38 NKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRA 97
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET 329
VK +G + N + + K P+SV++ S Y G T
Sbjct: 98 KQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCGT 155
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAG 385
+ HAV VGYGK Y L++NSWG ++G+ +I+R GN+ CG+ + +
Sbjct: 156 ----KVEHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSY 211
Query: 386 YAT 388
Y T
Sbjct: 212 YPT 214
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 45/231 (19%)
Query: 155 AWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAI 214
A+DWR + P DQ CGSCWAFS G +E QYAI
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGS-----------------------VESQYAI 57
Query: 215 KTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCA 273
+ KL+ S+ +LV+C+ + GC+G + E G+ + DYPY + C
Sbjct: 58 RKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCN 115
Query: 274 YDKSKVKLFTGKDFLHFNGSETMKKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCS 331
D+ K + K++L ++ +K+ L GP +SV ++ D G D C
Sbjct: 116 IDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGIF----DGECG 169
Query: 332 PYDLGHAVLLVGYGKQDNIP----------YWLVRNSWGPIGPDEGFFKIE 372
L HAV+LVG+G ++ + Y++++NSWG + GF IE
Sbjct: 170 D-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE 219
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 43/235 (18%)
Query: 155 AWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAI 214
A+DWR P DQA CGSCWAFS G +E QYAI
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGS-----------------------VESQYAI 59
Query: 215 KTGKLVEFSKSQLVECAKQCSGCDGCFFEPSI-EYTHQAGLESEKDYPYKNANGEKFKCA 273
+ L FS+ +LV+C+ + +GC G + + + GL S+ DYPY + E C
Sbjct: 60 RKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCN 117
Query: 274 YDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSP 332
+ + +T K ++ + K+ L GP+S+ + SD Y G + +P
Sbjct: 118 LKRCNER-YTIKSYVSIP-DDKFKEALRYLGPISISIAASDDFAFYRGG-FYDGECGAAP 174
Query: 333 YDLGHAVLLVGYGKQD----------NIPYWLVRNSWGPIGPDEGFFKIERGNNA 377
HAV+LVGYG +D Y++++NSWG + G+ +E N
Sbjct: 175 ---NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENG 226
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGSCWAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEAT--- 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG 345
+ CS D+ H VL+VGYG
Sbjct: 154 PD---CSSEDMDHGVLVVGYG 171
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 105/259 (40%), Gaps = 51/259 (19%)
Query: 150 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFP 205
P+P ++D W DQ+ACGSCWA + A S D+FC +
Sbjct: 92 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMS----------DRFCTM--- 138
Query: 206 GMLEGQYAIKTGKLVEFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY-- 262
G ++ V S L+ C C GC+G + + Y GL S+ PY
Sbjct: 139 GGVQD---------VHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPF 189
Query: 263 -------KNANG---------EKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYK 302
K+ NG + KC Y D + + + + + G + + L+
Sbjct: 190 PHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFF 249
Query: 303 YGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI 362
GP V D+ D+ Y GHAV LVG+G + +PYW + NSW
Sbjct: 250 RGPFEVAF--DVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTE 307
Query: 363 GPDEGFFKIERGNNACGIE 381
+G+F I RG++ CGIE
Sbjct: 308 WGMDGYFLIRRGSSECGIE 326
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 151 PVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPG 206
P+P ++D W DQ+ACGSCWA + A S D+FC + G
Sbjct: 70 PLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMS----------DRFCTM---G 116
Query: 207 MLEGQYAIKTGKLVEFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY--- 262
++ V S L+ C C GC+G + + Y GL S+ PY
Sbjct: 117 GVQD---------VHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFP 167
Query: 263 ------KNANG---------EKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKY 303
K+ NG + KC Y D + + + + + G + + L+
Sbjct: 168 HCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFR 227
Query: 304 GPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIG 363
GP V D+ D+ Y GHAV LVG+G + +PYW + NSW
Sbjct: 228 GPFEVAF--DVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEW 285
Query: 364 PDEGFFKIERGNNACGIE 381
+G+F I RG++ CGIE
Sbjct: 286 GMDGYFLIRRGSSECGIE 303
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P++ DWR K P Q C SCWAFS +EG
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVA-----------------------TVEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
IKTG LVE S+ +LV+C Q GC+ + S++Y Q G+ YPY
Sbjct: 38 NKIKTGNLVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQNGIHLRAKYPYIAKQQTCRA 97
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDET 329
KVK N + I ++ P+SV++ S +Y G + T
Sbjct: 98 NQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQ--PVSVVVESAGRDFQNYKGGIFEGSCGT 155
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGI 380
+ HAV VGYGK Y L++NSWGP + G+ +I R GN+ CG+
Sbjct: 156 ----KVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 151 PVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPG 206
P+P ++D W DQ+ACGSCWA + A S D+FC + G
Sbjct: 71 PLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMS----------DRFCTM---G 117
Query: 207 MLEGQYAIKTGKLVEFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY--- 262
++ V S L+ C C GC+G + + Y GL S+ PY
Sbjct: 118 GVQD---------VHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFP 168
Query: 263 ------KNANG---------EKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKY 303
K+ NG + KC Y D + + + + + G + + L+
Sbjct: 169 HCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFR 228
Query: 304 GPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIG 363
GP V D+ D+ Y GHAV LVG+G + +PYW + NSW
Sbjct: 229 GPFEVAF--DVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEW 286
Query: 364 PDEGFFKIERGNNACGIE 381
+G+F I RG++ CGIE
Sbjct: 287 GMDGYFLIRRGSSECGIE 304
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 45/231 (19%)
Query: 155 AWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAI 214
A+DWR + P DQ CGS WAFS G +E QYAI
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGS-----------------------VESQYAI 56
Query: 215 KTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCA 273
+ KL+ S+ +LV+C+ + GC+G + E G+ + DYPY + C
Sbjct: 57 RKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCN 114
Query: 274 YDKSKVKLFTGKDFLHFNGSETMKKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCS 331
D+ K + K++L ++ +K+ L GP +SV ++ D G D C
Sbjct: 115 IDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGIF----DGECG 168
Query: 332 PYDLGHAVLLVGYGKQDNIP----------YWLVRNSWGPIGPDEGFFKIE 372
L HAV+LVG+G ++ + Y++++NSWG + GF IE
Sbjct: 169 D-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE 218
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR+K P +Q +CGSCWAFS +EG
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVV-----------------------TIEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TG L E+S+ +L++C ++ GC+G + +++ Q G+ YPY+ +++
Sbjct: 38 IKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYC 95
Query: 272 CAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
+ +K T + +N + I + P+SV+L + D+ + +
Sbjct: 96 RSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIF 149
Query: 330 CSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
P + HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 150 VGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR+K P +Q +CGSCWAFS +EG
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAV-----------------------VTIEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TG L ++S+ +L++C ++ GC+G + +++ Q G+ YPY+ +++
Sbjct: 38 IKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYC 95
Query: 272 CAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
+ +K T + +N + I + P+SV+L + D+ + +
Sbjct: 96 RSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIF 149
Query: 330 CSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
P + HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 150 VGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 37/201 (18%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P + DWR+K P +Q CGS WAFS G LEGQ
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSAT-----------------------GALEGQ 37
Query: 212 YAIKTGKLVEFSKSQLVECA--KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGE 268
KTG+L+ S+ LV+C+ + GC+G + + +Y GL+SE+ YPY+
Sbjct: 38 MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEAT--- 94
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIR 324
+ C Y+ K + F+ E + K + GP+SV +++ + G
Sbjct: 95 EESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE 153
Query: 325 KNDETCSPYDLGHAVLLVGYG 345
+ CS D+ H VL+VGYG
Sbjct: 154 PD---CSSEDMDHGVLVVGYG 171
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 40/233 (17%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P+ DWR+K P +Q +CGSCWAFS +EG
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVV-----------------------TIEGII 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC 272
I+TG L ++S+ +L++C ++ GC+G + +++ Q G+ YPY+ +++
Sbjct: 39 KIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCR 96
Query: 273 AYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
+ +K T + +N + I + P+SV+L + D+ + +
Sbjct: 97 SREKGPYAAKTDGVRQVQPYNQGALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFV 150
Query: 331 SP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
P + HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 151 GPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR+K P +Q +CGS WAFS +EG
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVV-----------------------TIEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TG L E+S+ +L++C ++ GC+G + +++ Q G+ YPY+ +++
Sbjct: 38 IKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYC 95
Query: 272 CAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
+ +K T + +N + I + P+SV+L + D+ + +
Sbjct: 96 RSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIF 149
Query: 330 CSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
P + HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 150 VGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR+K P +Q +CGS WAFS +EG
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVV-----------------------TIEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TG L ++S+ +L++C ++ GC+G + +++ Q G+ YPY+ +++
Sbjct: 38 IKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYC 95
Query: 272 CAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
+ +K T + +N + I + P+SV+L + D+ + +
Sbjct: 96 RSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIF 149
Query: 330 CSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
P + HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 150 VGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 39/235 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P + DWR+K P +Q CGSCW FS +EG
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVA-----------------------AVEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I TG+L+ S+ +L++C ++ GC G F +++Y +G+ + YPY+ +
Sbjct: 38 NKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRA 97
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET 329
KVK N +++I + P+S+++ + +Y G T
Sbjct: 98 SQAKGPKVKTDGVGRVPRNNEQALIQRIAIQ--PVSIVVEAKGRAFQNYRGGIFAGPCGT 155
Query: 330 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 380
+ HAV VGYG Y L++NSWG + G+ +I+RG+ ACG+
Sbjct: 156 ----SIDHAVAAVGYGND----YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR+K P +Q +CGS WAFS +EG
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVV-----------------------TIEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TG L ++S+ +L++C ++ GC+G + +++ Q G+ YPY+ +++
Sbjct: 38 IKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYC 95
Query: 272 CAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET 329
+ +K T + +N + I + P+SV+L + D+ + +
Sbjct: 96 RSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIF 149
Query: 330 CSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI 380
P + HAV VGYG Y L++NSWG + G+ +I+RG N+ G+
Sbjct: 150 VGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 65/270 (24%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+P+++D R++ P DQ +CGSCWAF S+ + + N
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTN------------- 53
Query: 208 LEGQYAIKTGKL-VEFSKSQLVECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY---- 260
G++ VE S L+ C QC GC+G + + + + GL S Y
Sbjct: 54 ---------GRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHI 104
Query: 261 ---PY------KNANGEKFKCAYD--------------KSKVKLFTGKDFLHFNGSETMK 297
PY + NG + C + + K + ++ S++ K
Sbjct: 105 GCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEK 164
Query: 298 KIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 352
+I+ YK GP+ + + SD + +G + + GHA+ ++G+G ++ +PY
Sbjct: 165 EIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPY 220
Query: 353 WLVRNSWGPIGPDEGFFKIERGNNACGIEQ 382
WLV NSW D GFFKI RG N CGIE
Sbjct: 221 WLVANSWNADWGDNGFFKILRGENHCGIES 250
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 65/270 (24%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+P+++D R++ P DQ +CGSCWAF S+ + + N
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTN------------- 47
Query: 208 LEGQYAIKTGKL-VEFSKSQLVECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY---- 260
G++ VE S L+ C QC GC+G + + + + GL S Y
Sbjct: 48 ---------GRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHI 98
Query: 261 ---PY------KNANGEKFKCAYD--------------KSKVKLFTGKDFLHFNGSETMK 297
PY + NG + C + + K + ++ S++ K
Sbjct: 99 GCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEK 158
Query: 298 KIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 352
+I+ YK GP+ + + SD + +G + + GHA+ ++G+G ++ +PY
Sbjct: 159 EIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPY 214
Query: 353 WLVRNSWGPIGPDEGFFKIERGNNACGIEQ 382
WLV NSW D GFFKI RG N CGIE
Sbjct: 215 WLVANSWNADWGDNGFFKILRGENHCGIES 244
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 114/273 (41%), Gaps = 73/273 (26%)
Query: 152 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+P ++D RKK DQ+ CGSCWAF S D+ C
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMS----------DRSC------- 45
Query: 208 LEGQYAIKTG--KLVEFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGL--ESEKD--- 259
I++G + VE S L+ C + C GC+G P+ +Y + G+ S K+
Sbjct: 46 ------IQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHA 99
Query: 260 ----YPY------------------------KNANGEKFKCAYDKSKVKLFTGKDFLHF- 290
YP+ K +K+K Y + K + GK +
Sbjct: 100 GCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHR---GKSSYNVK 156
Query: 291 NGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 348
N + ++K + KYGP+ + D ++ +G ET GHA+ ++G+G ++
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLG----GHAIRIIGWGVEN 212
Query: 349 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 381
PYWL+ NSW + G+F+I RG + C IE
Sbjct: 213 KAPYWLIANSWNEDWGENGYFRIVRGRDECSIE 245
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 37/226 (16%)
Query: 149 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGML 208
+G P D R+ P Q CGSCWAFS + L Y N
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRN-------------- 52
Query: 209 EGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE 268
+ ++ ++ +LV+CA Q GC G IEY G+ E Y Y
Sbjct: 53 ---------QSLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---AR 99
Query: 269 KFKCAYDKSKVKLFTGKDFLHF---NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTP 322
+ C + + F ++ N ++ + + + ++V++ + D Y+G
Sbjct: 100 EQSC--RRPNAQRFGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRT 157
Query: 323 IRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGF 368
I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 158 IIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 39/227 (17%)
Query: 149 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFS-IAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+G P D R+ P Q CGSCWAFS +A S YL +D
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLD---------- 56
Query: 208 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANG 267
++ +LV+CA Q GC G IEY G+ E Y Y
Sbjct: 57 --------------LAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---A 98
Query: 268 EKFKCAYDKSKVKLFTGKDFLHF---NGSETMKKILYKYGPLSVLL---NSDLIHDYNGT 321
+ C + + F ++ N ++ + + + ++V++ + D Y+G
Sbjct: 99 REQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGR 156
Query: 322 PIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGF 368
I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 157 TIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 102/259 (39%), Gaps = 63/259 (24%)
Query: 169 DQAACGSCWAFSIAGKFSNYLLQYLN-HIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL 227
DQ +CGSCWAF S+ + + N H+ VE S L
Sbjct: 85 DQGSCGSCWAFGAVEAISDRICIHTNAHVS----------------------VEVSAEDL 122
Query: 228 VEC-AKQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEKFKC 272
+ C C GC+G + + + + GL S Y PY + NG + C
Sbjct: 123 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 273 AYDKSKVKLF---------TGKDFLHF--------NGSETMKKILYKYGPL--SVLLNSD 313
+ K T K H+ N + + +YK GP+ + + SD
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 373
+ +G E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 243 FLLYKSGVYQHVTGEMMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 298
Query: 374 GNNACGIEQ--IAGYATID 390
G + CGIE +AG D
Sbjct: 299 GQDHCGIESEVVAGIPRTD 317
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 65/270 (24%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+P+++D R++ P DQ +CGS WAF S+ + + N
Sbjct: 63 LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTN------------- 109
Query: 208 LEGQYAIKTGKL-VEFSKSQLVECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY---- 260
G++ VE S L+ C QC GC+G + + + + GL S Y
Sbjct: 110 ---------GRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHI 160
Query: 261 ---PY------KNANGEKFKCAYD--------------KSKVKLFTGKDFLHFNGSETMK 297
PY + NG + C + + K + ++ S++ K
Sbjct: 161 GCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEK 220
Query: 298 KIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 352
+I+ YK GP+ + + SD + +G + + GHA+ ++G+G ++ +PY
Sbjct: 221 EIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPY 276
Query: 353 WLVRNSWGPIGPDEGFFKIERGNNACGIEQ 382
WLV NSW D GFFKI RG N CGIE
Sbjct: 277 WLVANSWNADWGDNGFFKILRGENHCGIES 306
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 102/259 (39%), Gaps = 63/259 (24%)
Query: 169 DQAACGSCWAFSIAGKFSNYLLQYLN-HIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL 227
DQ +CGSCWAF S+ + + N H+ VE S L
Sbjct: 24 DQGSCGSCWAFGAVEAISDRICIHTNAHVS----------------------VEVSAEDL 61
Query: 228 VEC-AKQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEKFKC 272
+ C C GC+G + + + + GL S Y PY + NG + C
Sbjct: 62 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 273 AYDKSKVKLF---------TGKDFLHF--------NGSETMKKILYKYGPL--SVLLNSD 313
+ K T K H+ N + + +YK GP+ + + SD
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 373
+ +G E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 182 FLLYKSGVYQHVTGEMMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 237
Query: 374 GNNACGIEQ--IAGYATID 390
G + CGIE +AG D
Sbjct: 238 GQDHCGIESEVVAGIPRTD 256
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 102/259 (39%), Gaps = 63/259 (24%)
Query: 169 DQAACGSCWAFSIAGKFSNYLLQYLN-HIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL 227
DQ +CGSCWAF S+ + + N H+ VE S L
Sbjct: 23 DQGSCGSCWAFGAVEAISDRICIHTNAHVS----------------------VEVSAEDL 60
Query: 228 VEC-AKQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEKFKC 272
+ C C GC+G + + + + GL S Y PY + NG + C
Sbjct: 61 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 273 AYDKSKVKLF---------TGKDFLHF--------NGSETMKKILYKYGPL--SVLLNSD 313
+ K T K H+ N + + +YK GP+ + + SD
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 373
+ +G E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 181 FLLYKSGVYQHVTGEMMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 236
Query: 374 GNNACGIEQ--IAGYATID 390
G + CGIE +AG D
Sbjct: 237 GQDHCGIESEVVAGIPRTD 255
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 101/259 (38%), Gaps = 63/259 (24%)
Query: 169 DQAACGSCWAFSIAGKFSNYLLQYLN-HIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL 227
DQ +CGSCWAF S+ + + N H+ VE S L
Sbjct: 22 DQGSCGSCWAFGAVEAISDRICIHTNAHVS----------------------VEVSAEDL 59
Query: 228 VEC-AKQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEKFKC 272
+ C C GC+G + + + + GL S Y PY + NG + C
Sbjct: 60 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 273 AYDKSKVKLF---------TGKDFLHF--------NGSETMKKILYKYGPLSVLLN--SD 313
+ K T K H+ N + + +YK GP+ + SD
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 373
+ +G E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 180 FLLYKSGVYQHVTGEMMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
Query: 374 GNNACGIEQ--IAGYATID 390
G + CGIE +AG D
Sbjct: 236 GQDHCGIESEVVAGIPRTD 254
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 39/227 (17%)
Query: 149 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFS-IAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+G P D R+ P Q CGS WAFS +A S YL + DQ
Sbjct: 87 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLA----YRDQ--------- 133
Query: 208 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANG 267
++ ++ +LV+CA Q GC G IEY G+ E Y Y
Sbjct: 134 -----------SLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---A 178
Query: 268 EKFKCAYDKSKVKLFTGKDFLHF---NGSETMKKILYKYGPLSVLL---NSDLIHDYNGT 321
+ C + + F ++ N ++ + + + ++V++ + D Y+G
Sbjct: 179 REQSCR--RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGR 236
Query: 322 PIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGF 368
I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 237 TIIQRDNGYQPN--YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 101/259 (38%), Gaps = 63/259 (24%)
Query: 169 DQAACGSCWAFSIAGKFSNYLLQYLN-HIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL 227
DQ +CGS WAF S+ + + N H+ VE S L
Sbjct: 28 DQGSCGSAWAFGAVEAISDRICIHTNAHVS----------------------VEVSAEDL 65
Query: 228 VEC-AKQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEKFKC 272
+ C C GC+G + + + + GL S Y PY + NG + C
Sbjct: 66 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 273 AYDKSKVKLF---------TGKDFLHF--------NGSETMKKILYKYGPL--SVLLNSD 313
+ K T K H+ N + + +YK GP+ + + SD
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 185
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 373
+ +G E GHA+ ++G+G ++ PYWLV NSW D GFFKI R
Sbjct: 186 FLLYKSGVYQHVTGEMMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 241
Query: 374 GNNACGIEQ--IAGYATID 390
G + CGIE +AG D
Sbjct: 242 GQDHCGIESEVVAGIPRTD 260
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 39/227 (17%)
Query: 149 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFS-IAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+G P D R+ P Q CGS WAFS +A S YL +D
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLD---------- 56
Query: 208 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANG 267
++ +LV+CA Q GC G IEY G+ E Y Y
Sbjct: 57 --------------LAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---A 98
Query: 268 EKFKCAYDKSKVKLFTGKDFLHF---NGSETMKKILYKYGPLSVLL---NSDLIHDYNGT 321
+ C + + F ++ N ++ + + + ++V++ + D Y+G
Sbjct: 99 REQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGR 156
Query: 322 PIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGF 368
I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 157 TIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 42/238 (17%)
Query: 152 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFP 205
+P +WDWR ++T CGSCWA + ++ I+ +P
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMAD-------RINIKRKGAWP 53
Query: 206 GMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNA 265
L S +++C S C+G +Y HQ G+ E Y+
Sbjct: 54 STL-------------LSVQNVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAK 99
Query: 266 NGE-----------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSD 313
+ E +FK + L+ D+ +G E M +Y GP+S ++ ++
Sbjct: 100 DQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATE 159
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 371
+ +Y G + +T + H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 160 RLANYTGGIYAEYQDTTY---INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 42/238 (17%)
Query: 152 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFP 205
+P +WDWR ++T CGSCWA + ++ I+ +P
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMAD-------RINIKRKGAWP 88
Query: 206 GMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNA 265
L S +++C S C+G +Y HQ G+ E Y+
Sbjct: 89 STL-------------LSVQNVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAK 134
Query: 266 NGE-----------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSD 313
+ E +FK + L+ D+ +G E M +Y GP+S ++ ++
Sbjct: 135 DQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATE 194
Query: 314 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 371
+ +Y G + +T + H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 195 RLANYTGGIYAEYQDTTY---INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 25/250 (10%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLNHI--------DQF 199
+P+++D R++ P DQ +CGSCWAF S+ + + N D
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 200 CLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCDGCFFEPSIEYTH--QAGLE 255
+G ++K LV S GC P + + +
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 256 SEKDYPYKNANGEK-FKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--S 312
E D P + E + +Y + K F + N + + +YK GP+ + S
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDK--HFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYS 178
Query: 313 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIE 372
D + +G + E GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 179 DFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKIL 234
Query: 373 RGNNACGIEQ 382
RG + CGIE
Sbjct: 235 RGQDHCGIES 244
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 35/255 (13%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLNHI--------DQF 199
+P+++D R++ P DQ +CGSCWAF S+ + + N D
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 200 CLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCDGCFFEPSIEYTHQAGLESE 257
+G ++K LV S GC P + + +
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGS----- 115
Query: 258 KDYPYKNANGEKFKCA------YDKS--KVKLFTGKDFLHFNGSETMKKILYKYGPLSVL 309
P G+ KC+ Y S + K F + N + + +YK GP+
Sbjct: 116 --RPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGA 173
Query: 310 LN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEG 367
+ SD + +G + E GHA+ ++G+G ++ PYWLV NSW D G
Sbjct: 174 FSVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNG 229
Query: 368 FFKIERGNNACGIEQ 382
FFKI RG + CGIE
Sbjct: 230 FFKILRGQDHCGIES 244
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 331 SPYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 387
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I RG + C IE IA A
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 388 T 388
T
Sbjct: 64 T 64
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 336 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 390
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CGIE +AG D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 291 NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 348
N E M +I YK GP+ + + SD + +G + E GHA+ ++G+G ++
Sbjct: 108 NEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVEN 162
Query: 349 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 382
PYWLV NSW D GFFKI RG + CGIE
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 43/180 (23%)
Query: 152 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGML 208
+P +WDWR N P +QA+CGSC++F+ GML
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASM-----------------------GML 37
Query: 209 EGQYAIKT--GKLVEFSKSQLVECAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNA 265
E + I T + S ++V C++ GC+G F + + +Y GL E +PY
Sbjct: 38 EARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY--- 94
Query: 266 NGEKFKCAYDKSKVKLFTGKDFLHFNGS-------ETMKKILYKYGPLSVLLN--SDLIH 316
G C + + ++ + H+ G MK L +GP++V D +H
Sbjct: 95 TGTDSPCKMKEDCFRYYSSE--YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 152
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 324 RKNDETCSPYDLGHAVLLVGYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIE 372
+K C HAV +VGYG N YW+VRNSWGP DEG+FK++
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 324 RKNDETCSPYDLGHAVLLVGYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIE 372
+K C HAV +VGYG N YW+VRNSWGP DEG+FK++
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 349 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
N YWLV+NSWG G+ K+ + N CGI A Y T+
Sbjct: 1 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 319 NGTPIR-----KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFF 369
N P+R KND + GHAVL VGY D I ++ +RNSWG ++G+F
Sbjct: 218 NSLPVRIPLPTKNDTL----EGGHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLN 194
+P+++D R++ P DQ +CGSCWAF S+ + + N
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSN 47
>pdb|3KE2|A Chain A, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
From Shewanella Amazonensis Sb2b At 2.50 A Resolution
pdb|3KE2|B Chain B, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
From Shewanella Amazonensis Sb2b At 2.50 A Resolution
pdb|3KE2|C Chain C, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
From Shewanella Amazonensis Sb2b At 2.50 A Resolution
Length = 117
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 320 GTPIRK-NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNAC 378
G P R D S D+G V V G++ N Y+ +R +WGPI ++ +
Sbjct: 44 GXPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIR-TWGPISSAWXDTHVDEVKSLL 102
Query: 379 GIEQIAGYAT 388
G++ G AT
Sbjct: 103 GVDDAVGQAT 112
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 152 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGKFSNYLLQYLN 194
+P ++D R++ P DQ +CGSCWAF S+ + + N
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 47
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 340 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 383
LL G+ + + P W ++ W +EG F +ERG +A ++++
Sbjct: 137 LLEGWDQAEASPEWTLQERWRAFAAEEG-FPVERGLHAKRLKEV 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,448,095
Number of Sequences: 62578
Number of extensions: 545020
Number of successful extensions: 1591
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 130
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)