Query psy667
Match_columns 392
No_of_seqs 340 out of 1804
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:06:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 4.3E-84 9.3E-89 613.3 20.5 290 64-389 67-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.7E-76 8E-81 581.5 27.9 293 61-389 31-340 (348)
3 PTZ00200 cysteine proteinase; 100.0 1.7E-74 3.8E-79 584.0 29.2 322 33-389 88-445 (448)
4 PTZ00021 falcipain-2; Provisio 100.0 6.5E-73 1.4E-77 574.6 25.5 292 65-390 166-489 (489)
5 KOG1543|consensus 100.0 2E-66 4.4E-71 508.7 24.7 276 72-386 30-320 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.7E-58 3.7E-63 437.2 20.8 209 152-387 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 1.7E-57 3.7E-62 429.5 21.3 206 152-388 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 5.7E-57 1.2E-61 416.3 20.5 206 153-387 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 6.1E-57 1.3E-61 424.9 19.2 207 153-386 1-235 (236)
10 PF00112 Peptidase_C1: Papain 100.0 7.8E-55 1.7E-59 402.8 17.3 208 152-388 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 3.9E-54 8.4E-59 446.4 21.3 215 150-391 379-678 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 1.2E-53 2.7E-58 438.4 20.9 215 150-387 203-457 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.3E-49 2.7E-54 358.4 17.0 166 152-384 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 2.7E-46 5.8E-51 346.3 18.2 196 155-379 1-216 (223)
15 PTZ00462 Serine-repeat antigen 100.0 7.9E-46 1.7E-50 394.2 20.0 201 164-391 544-783 (1004)
16 KOG1544|consensus 100.0 8E-43 1.7E-47 327.5 9.9 255 106-387 169-458 (470)
17 COG4870 Cysteine protease [Pos 99.9 7.1E-28 1.5E-32 232.1 8.7 191 151-375 98-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 3.3E-23 7.1E-28 209.3 14.9 186 165-374 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.6 1.8E-15 3.9E-20 153.3 13.6 187 165-374 56-400 (438)
20 PF08246 Inhibitor_I29: Cathep 99.4 2.3E-13 5E-18 100.3 5.5 49 68-116 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.2 2.1E-11 4.6E-16 89.1 4.1 48 68-115 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.7 3.4E-08 7.4E-13 95.0 7.3 75 299-373 307-401 (444)
23 KOG4128|consensus 96.7 0.0008 1.7E-08 65.2 2.0 81 292-372 305-412 (457)
24 PF05543 Peptidase_C47: Stapho 95.3 0.19 4.2E-06 44.9 10.0 120 169-361 18-146 (175)
25 PF13529 Peptidase_C39_2: Pept 95.2 0.06 1.3E-06 45.3 6.6 55 292-359 88-144 (144)
26 PF09778 Guanylate_cyc_2: Guan 89.2 1.4 3.1E-05 40.8 7.2 64 292-357 112-180 (212)
27 PF14399 Transpep_BrtH: NlpC/p 83.8 3.3 7.2E-05 40.2 7.1 57 292-357 77-133 (317)
28 COG4990 Uncharacterized protei 72.0 8.4 0.00018 34.8 5.2 47 292-360 122-168 (195)
29 cd02549 Peptidase_C39A A sub-f 64.1 20 0.00043 29.9 6.0 45 296-359 70-114 (141)
30 cd00044 CysPc Calpains, domain 53.1 20 0.00043 35.2 4.6 28 334-361 234-263 (315)
31 PF12385 Peptidase_C70: Papain 42.9 59 0.0013 28.9 5.3 39 292-347 97-135 (166)
32 smart00230 CysPc Calpain-like 25.8 1.2E+02 0.0026 29.8 5.2 28 334-361 226-255 (318)
33 PF01640 Peptidase_C10: Peptid 23.6 2.8E+02 0.0061 25.0 6.8 51 293-370 140-192 (192)
No 1
>KOG1542|consensus
Probab=100.00 E-value=4.3e-84 Score=613.32 Aligned_cols=290 Identities=40% Similarity=0.755 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHhCCCcCChHHHHHHHHHHHHHHH--hhh-------hhccCCcCCCCChHHHhhhcCccccccc--hhhh
Q psy667 64 ILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--KKH-------ERYGTSEFSDRSPEEILCKTGFKWSERT--YERI 132 (392)
Q Consensus 64 ~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h-------~~lgiN~FsDlT~eEf~~~~~~~~~~~~--~~~~ 132 (392)
..+.|..|+.+|+|+|.+.+|+..|+.||++|++ +++ ..+|+|+|||||+||| ++.|++.+.. ..+.
T Consensus 67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEF--kk~~l~~~~~~~~~~~ 144 (372)
T KOG1542|consen 67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEF--KKIYLGVKRRGSKLPG 144 (372)
T ss_pred hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHH--HHHhhccccccccCcc
Confidence 4789999999999999999999999999999999 444 7789999999999999 8887765542 1111
Q ss_pred hhhhhHHHHHhhhccCCCCCCCeeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHH
Q psy667 133 VADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212 (392)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~ 212 (392)
.....+ ..+..++|++||||++|+||||||||.||||||||++++ +|+++
T Consensus 145 ~~~~~~-------~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~-----------------------vEga~ 194 (372)
T KOG1542|consen 145 DAAEAP-------IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGA-----------------------VEGAW 194 (372)
T ss_pred ccccCc-------CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhh-----------------------hhhHH
Confidence 111111 123458999999999999999999999999999999999 99999
Q ss_pred HHHhCCccccchhhhhhhccCCCCCCCCCchhhHHHH-HhCCCCCCCCCCCCCCCCCCc-ccccCCCCceeEecccceec
Q psy667 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKF-KCAYDKSKVKLFTGKDFLHF 290 (392)
Q Consensus 213 ~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~~~-~C~~~~~~~~~~i~~~y~~~ 290 (392)
+|++|++++||||+|+||+..++||+||.+..||+|+ +..|+..|++|||+ +..+ .|..++....+.|+ +|..+
T Consensus 195 ~i~~g~LvsLSEQeLvDCD~~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~---g~~~~~C~~~~~~~~v~I~-~f~~l 270 (372)
T KOG1542|consen 195 AIATGKLVSLSEQELVDCDSCDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYT---GKKGNQCHFDKSKIVVSIK-DFSML 270 (372)
T ss_pred HhhcCcccccchhhhhcccCcCCcCCCCChhHHHHHHHHhCCccccccCCcc---ccCCCccccchhhceEEEe-ccEec
Confidence 9999999999999999999999999999999999996 88999999999999 8887 99999999999999 99999
Q ss_pred C-CHHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecC-CccEEEEEcCCCCCCCCCcE
Q psy667 291 N-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-NIPYWLVRNSWGPIGPDEGF 368 (392)
Q Consensus 291 ~-~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~-g~~ywiikNSWG~~WG~~GY 368 (392)
+ ++++|.+.|.++|||+|+|++..+|+|.+||+.+....|++..++|||+|||||... .++|||||||||++|||+||
T Consensus 271 ~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY 350 (372)
T KOG1542|consen 271 SNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGY 350 (372)
T ss_pred CCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccce
Confidence 9 999999999999999999999899999999999966689987899999999999987 89999999999999999999
Q ss_pred EEEEecCCccccccceeEEEE
Q psy667 369 FKIERGNNACGIEQIAGYATI 389 (392)
Q Consensus 369 ~~i~r~~n~cgi~~~~~~~~~ 389 (392)
+|+.||.|.|||++.++.+.+
T Consensus 351 ~~l~RG~N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 351 YKLCRGSNACGIADMVSSAAV 371 (372)
T ss_pred EEEeccccccccccchhhhhc
Confidence 999999999999999988765
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.7e-76 Score=581.55 Aligned_cols=293 Identities=29% Similarity=0.552 Sum_probs=243.8
Q ss_pred hhHHHHHHHHHHHHhCCCcCChHHHHHHHHHHHHHHH--hhh------hhccCCcCCCCChHHHhhhcCcccccc-chhh
Q psy667 61 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--KKH------ERYGTSEFSDRSPEEILCKTGFKWSER-TYER 131 (392)
Q Consensus 61 ~~~~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h------~~lgiN~FsDlT~eEf~~~~~~~~~~~-~~~~ 131 (392)
..+++.+|++|+++|+|.|.+.+|+.+|+.||++|++ ++| |++|+|+|+|||+||| .+.+++... ...+
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf--~~~~l~~~~~~~~~ 108 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEF--AARYLNGAAYFAAA 108 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHH--HHHhcCCCcccccc
Confidence 4456678999999999999998899999999999999 666 8899999999999999 655543111 0000
Q ss_pred hhhhhhHHHHHhhhccCCCCCCCeeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHH
Q psy667 132 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211 (392)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~ 211 (392)
.......... ......++|++||||++|+|+||||||.||||||||++++ +|++
T Consensus 109 ~~~~~~~~~~---~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~a-----------------------iEs~ 162 (348)
T PTZ00203 109 KQHAGQHYRK---ARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGN-----------------------IESQ 162 (348)
T ss_pred cccccccccc---cccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHH-----------------------HHHH
Confidence 0000000000 0001136899999999999999999999999999999999 9999
Q ss_pred HHHHhCCccccchhhhhhhccCCCCCCCCCchhhHHHHHh---CCCCCCCCCCCCCCCCCCc---ccccCCC-CceeEec
Q psy667 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKF---KCAYDKS-KVKLFTG 284 (392)
Q Consensus 212 ~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~---~Gi~~e~~yPY~~~~~~~~---~C~~~~~-~~~~~i~ 284 (392)
+++++++.+.||+|+|+||+..+.||+||++..||+|+.+ +|+++|++|||. +.++ .|..... ...+++.
T Consensus 163 ~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~---~~~~~~~~C~~~~~~~~~~~i~ 239 (348)
T PTZ00203 163 WAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYV---SGNGDVPECSNSSELAPGARID 239 (348)
T ss_pred HHHhcCCCccCCHHHHHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCc---cCCCCCCcCCCCcccccceEec
Confidence 9999999999999999999987899999999999999943 468999999999 5444 6874332 2346787
Q ss_pred ccceecC-CHHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCC
Q psy667 285 KDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIG 363 (392)
Q Consensus 285 ~~y~~~~-~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG~~W 363 (392)
+|..++ +++.|+.+|+++|||+|+|++++|++|++|||. .|....++|||+|||||.++|++|||||||||++|
T Consensus 240 -~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~Y~~GIy~----~c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~W 314 (348)
T PTZ00203 240 -GYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLT----SCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDW 314 (348)
T ss_pred -ceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcCccCceee----ccCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCc
Confidence 998887 888999999999999999999899999999996 37655689999999999988999999999999999
Q ss_pred CCCcEEEEEecCCccccccceeEEEE
Q psy667 364 PDEGFFKIERGNNACGIEQIAGYATI 389 (392)
Q Consensus 364 G~~GY~~i~r~~n~cgi~~~~~~~~~ 389 (392)
||+|||||+||.|.|||++++..+.+
T Consensus 315 Ge~GY~ri~rg~n~Cgi~~~~~~~~~ 340 (348)
T PTZ00203 315 GEKGYVRVTMGVNACLLTGYPVSVHV 340 (348)
T ss_pred CcCceEEEEcCCCcccccceEEEEec
Confidence 99999999999999999988887654
No 3
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.7e-74 Score=584.03 Aligned_cols=322 Identities=29% Similarity=0.535 Sum_probs=264.2
Q ss_pred CCCCCcchhhhhhhhhhhhhhcCCCCCChh---HHHHHHHHHHHHhCCCcCChHHHHHHHHHHHHHHH--hhh-----hh
Q psy667 33 LPSLTDRITDQVVARVDTLAIEGSLTFDNE---NILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--KKH-----ER 102 (392)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h-----~~ 102 (392)
+|..+++.++.++.++.+|...+.+..++. ++..+|++|+++|+|.|.+.+|+.+|+.||++|++ ++| |+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~ 167 (448)
T PTZ00200 88 FPRLDKSKRDSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYS 167 (448)
T ss_pred CCCcChhHHHHHHHHHHHHhhCCCcCCCccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeE
Confidence 366667777888999999988877655543 34568999999999999999999999999999999 666 88
Q ss_pred ccCCcCCCCChHHHhhhcCccccccchh-----hh---hh---hhhHH-HHHh------hhc-cCCCCCCCeeecccCCC
Q psy667 103 YGTSEFSDRSPEEILCKTGFKWSERTYE-----RI---VA---DREKV-EKML------MEV-EKDGPVPDAWDWRKKNV 163 (392)
Q Consensus 103 lgiN~FsDlT~eEf~~~~~~~~~~~~~~-----~~---~~---~~~~~-~~~~------~~~-~~~~~lP~~~Dwr~~g~ 163 (392)
+|+|+|||||+||| .+.+++...+.. +. .. ..... .... .+. .....+|+++|||+.|+
T Consensus 168 lgiN~FsDlT~eEF--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~ 245 (448)
T PTZ00200 168 KEINKFSDLTEEEF--RKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADA 245 (448)
T ss_pred EeccccccCCHHHH--HHHhccCCCcccccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCC
Confidence 99999999999999 665654322100 00 00 00000 0000 000 00123699999999999
Q ss_pred CCCCCCCC-CCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCCccccchhhhhhhccCCCCCCCCCc
Q psy667 164 TGPAGDQA-ACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFF 242 (392)
Q Consensus 164 v~pVkdQg-~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~ 242 (392)
|+|||||| .||||||||++++ +|+++++++++.+.||+|+|+||+..+.||+||++
T Consensus 246 vtpVkdQG~~CGSCWAFat~~a-----------------------iEs~~~i~~~~~~~LSeQqLvDC~~~~~GC~GG~~ 302 (448)
T PTZ00200 246 VTKVKDQGLNCGSCWAFSSVGS-----------------------VESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGYP 302 (448)
T ss_pred CCCcccCCCccchHHHHhHHHH-----------------------HHHHHHHhcCCCeecCHHHHhhccCccCCCCCCcH
Confidence 99999999 9999999999999 99999999999999999999999988899999999
Q ss_pred hhhHHHHHhCCCCCCCCCCCCCCCCCCcccccCCCCceeEecccceecCCHHHHHHHHHcCCCeEEEEEcC-CCcccCCc
Q psy667 243 EPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGT 321 (392)
Q Consensus 243 ~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~~~~ik~~l~~~gPV~v~i~~~-~f~~y~~G 321 (392)
..|++|++++|+++|++|||. +..+.|..... ..+.|. +|..+++.+.+++++. +|||+|+|++. +|++|++|
T Consensus 303 ~~A~~yi~~~Gi~~e~~YPY~---~~~~~C~~~~~-~~~~i~-~y~~~~~~~~l~~~l~-~GPV~v~i~~~~~f~~Yk~G 376 (448)
T PTZ00200 303 DTALEYVKNKGLSSSSDVPYL---AKDGKCVVSST-KKVYID-SYLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSG 376 (448)
T ss_pred HHHHHHHhhcCccccccCCCC---CCCCCCcCCCC-CeeEec-ceEecCHHHHHHHHHh-cCCEEEEeecccccccCCCC
Confidence 999999988899999999999 88889986543 346787 8887776666777765 89999999995 89999999
Q ss_pred eeeCCCCCCCCCCCCeEEEEEEEee--cCCccEEEEEcCCCCCCCCCcEEEEEec---CCccccccceeEEEE
Q psy667 322 PIRKNDETCSPYDLGHAVLLVGYGK--QDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 389 (392)
Q Consensus 322 iy~~~~~~c~~~~~~Hav~iVGyg~--~~g~~ywiikNSWG~~WG~~GY~~i~r~---~n~cgi~~~~~~~~~ 389 (392)
||.+ .|+. .++|||+|||||. ++|.+|||||||||++|||+|||||+|+ .|.|||++.+.||++
T Consensus 377 Iy~~---~C~~-~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 377 VYNG---ECGK-SLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred cccc---ccCC-CCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence 9987 5876 4899999999985 4688999999999999999999999996 489999999999987
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=6.5e-73 Score=574.61 Aligned_cols=292 Identities=31% Similarity=0.572 Sum_probs=243.1
Q ss_pred HHHHHHHHHHhCCCcCChHHHHHHHHHHHHHHH--hhh-------hhccCCcCCCCChHHHhhhcCccccccchhhh--h
Q psy667 65 LETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--KKH-------ERYGTSEFSDRSPEEILCKTGFKWSERTYERI--V 133 (392)
Q Consensus 65 ~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h-------~~lgiN~FsDlT~eEf~~~~~~~~~~~~~~~~--~ 133 (392)
...|++|+.+|+|+|.+.+|+.+|+.||++|++ ++| |++|+|+|||||+||| ++.+++........ .
T Consensus 166 ~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF--~~~~l~~~~~~~~~~~~ 243 (489)
T PTZ00021 166 VNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEF--KKKYLTLKSFDFKSNGK 243 (489)
T ss_pred HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHH--HHHhccccccccccccc
Confidence 368999999999999999999999999999999 666 8899999999999999 66665432110000 0
Q ss_pred -hhhh-HHHHHhhh-ccCC-CCCCCeeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchh
Q psy667 134 -ADRE-KVEKMLME-VEKD-GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLE 209 (392)
Q Consensus 134 -~~~~-~~~~~~~~-~~~~-~~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le 209 (392)
.... ........ .+.. ...|+++|||+.|+|+||||||.||||||||++++ +|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~a-----------------------lE 300 (489)
T PTZ00021 244 KSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGV-----------------------VE 300 (489)
T ss_pred cccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHH-----------------------HH
Confidence 0000 00000000 0111 12499999999999999999999999999999999 99
Q ss_pred HHHHHHhCCccccchhhhhhhccCCCCCCCCCchhhHHHH-HhCCCCCCCCCCCCCCCCC-CcccccCCCCceeEecccc
Q psy667 210 GQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGE-KFKCAYDKSKVKLFTGKDF 287 (392)
Q Consensus 210 ~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~-~~~C~~~~~~~~~~i~~~y 287 (392)
+++++++++.+.||+|+|+||+..+.||+||++..|++|+ ..+||++|++|||. +. .+.|........++|. +|
T Consensus 301 s~~~I~~g~~v~LSeQqLVDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~---~~~~~~C~~~~~~~~~~i~-~y 376 (489)
T PTZ00021 301 SQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYV---SDTPELCNIDRCKEKYKIK-SY 376 (489)
T ss_pred HHHHHHcCCCcccCHHHHhhhccCCCCCCCcchHhhhhhhhhccccCcccccCcc---CCCCCccccccccccceee-eE
Confidence 9999999999999999999999888999999999999999 66699999999999 65 4789866555668888 99
Q ss_pred eecCCHHHHHHHHHcCCCeEEEEEcC-CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecC----------CccEEEEE
Q psy667 288 LHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD----------NIPYWLVR 356 (392)
Q Consensus 288 ~~~~~~~~ik~~l~~~gPV~v~i~~~-~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~----------g~~ywiik 356 (392)
..++ +++|+++|+.+|||+|+|++. +|++|++|||.+ .|+. .++|||+|||||+++ +.+|||||
T Consensus 377 ~~i~-~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~---~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVK 451 (489)
T PTZ00021 377 VSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDG---ECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIK 451 (489)
T ss_pred EEec-HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCC---CCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEE
Confidence 8886 578999999899999999995 899999999986 5876 589999999999753 24799999
Q ss_pred cCCCCCCCCCcEEEEEecC----CccccccceeEEEEE
Q psy667 357 NSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID 390 (392)
Q Consensus 357 NSWG~~WG~~GY~~i~r~~----n~cgi~~~~~~~~~~ 390 (392)
||||++|||+|||||+|+. |.|||++.+.||+++
T Consensus 452 NSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 452 NSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLIE 489 (489)
T ss_pred CCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEecC
Confidence 9999999999999999986 599999999999874
No 5
>KOG1543|consensus
Probab=100.00 E-value=2e-66 Score=508.69 Aligned_cols=276 Identities=34% Similarity=0.624 Sum_probs=237.1
Q ss_pred HHHhCCCcCChHHHHHHHHHHHHHHH--hhh-------hhccCCcCCCCChHHHhhhcCccccccchhhhhhhhhHHHHH
Q psy667 72 IVKRGRQYANDEEIKERFEYFKQDGH--KKH-------ERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKM 142 (392)
Q Consensus 72 ~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h-------~~lgiN~FsDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (392)
+.+|.+.|.+..|...|+.+|.+|++ +.| |++++|+|+|+|.+|+ .+.+.+...+.........+
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~--~~~~~~~~~~~~~~~~~~~~---- 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEF--KRKKTGKKPPEIKRDKFTEK---- 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHH--HHhhccccCccccccccccc----
Confidence 67777778777889999999999987 333 7899999999999999 76665544321100000000
Q ss_pred hhhccCCCCCCCeeecccCCC-CCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhC-Ccc
Q psy667 143 LMEVEKDGPVPDAWDWRKKNV-TGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTG-KLV 220 (392)
Q Consensus 143 ~~~~~~~~~lP~~~Dwr~~g~-v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~-~~~ 220 (392)
....++|++||||++|. ++||||||.||||||||++++ ||++++|++| .++
T Consensus 104 ----~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~a-----------------------ie~~~~i~~g~~l~ 156 (325)
T KOG1543|consen 104 ----LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGA-----------------------LEDRYNIKTGGKLL 156 (325)
T ss_pred ----cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHH-----------------------HHHHHHHHhCCccC
Confidence 11247999999999975 555999999999999999999 9999999999 999
Q ss_pred ccchhhhhhhcc-CCCCCCCCCchhhHHHHHhCCCCC-CCCCCCCCCCCCCcccccCCCCceeEecccceecC-CHHHHH
Q psy667 221 EFSKSQLVECAK-QCSGCDGCFFEPSIEYTHQAGLES-EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMK 297 (392)
Q Consensus 221 ~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~-~~~~ik 297 (392)
.||+|+|+||+. .++||+||.+..|++|++.+|+++ +++|||. +..+.|........+.+. ++..++ ++++|+
T Consensus 157 sLSeq~lvdC~~~~~~GC~GG~~~~A~~yi~~~G~~t~~~~Ypy~---~~~~~C~~~~~~~~~~~~-~~~~~~~~e~~i~ 232 (325)
T KOG1543|consen 157 SLSEQDLVDCCGECGDGCNGGEPKNAFKYIKKNGGVTECENYPYI---GKDGTCKSNKKDKTVTIK-GFYNVPANEEAIA 232 (325)
T ss_pred ccChhhhhhccCCCCCCcCCCCHHHHHHHHHHhCCCCCCcCCCCc---CCCCCccCCCccceeEee-eeeecCcCHHHHH
Confidence 999999999996 489999999999999997778777 9999999 888899988876777887 888787 999999
Q ss_pred HHHHcCCCeEEEEEcC-CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCCCCcEEEEEecCC
Q psy667 298 KILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN 376 (392)
Q Consensus 298 ~~l~~~gPV~v~i~~~-~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG~~WG~~GY~~i~r~~n 376 (392)
.+|+.+|||+|+|++. +|+.|++|||.++ .|....++|||+|||||+.++.+|||||||||+.|||+|||||.|+.|
T Consensus 233 ~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~--~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~ 310 (325)
T KOG1543|consen 233 EAVAKNGPVSVAIDAYEDFSLYKGGVYAEE--KGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN 310 (325)
T ss_pred HHHHhcCCeEEEEeehhhhhhccCceEeCC--CCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC
Confidence 9999999999999995 8999999999997 554435999999999999667899999999999999999999999999
Q ss_pred ccccccceeE
Q psy667 377 ACGIEQIAGY 386 (392)
Q Consensus 377 ~cgi~~~~~~ 386 (392)
.|+|++.+.|
T Consensus 311 ~~~I~~~~~~ 320 (325)
T KOG1543|consen 311 KCGIASEASY 320 (325)
T ss_pred chhhhccccc
Confidence 9999999988
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.7e-58 Score=437.25 Aligned_cols=209 Identities=32% Similarity=0.625 Sum_probs=183.2
Q ss_pred CCCeeecccCC----CCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCC------ccc
Q psy667 152 VPDAWDWRKKN----VTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGK------LVE 221 (392)
Q Consensus 152 lP~~~Dwr~~g----~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~------~~~ 221 (392)
||++||||+.+ +|+||+|||.||||||||++++ +|+++.+++++ .+.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~-----------------------ies~~~i~~~~~~~~~~~~~ 57 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYA-----------------------LEARIMIASNKTDPLGQQPI 57 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHH-----------------------HHHHHHHHhCCCCccccCcc
Confidence 69999999998 9999999999999999999999 99999998876 789
Q ss_pred cchhhhhhhccCCCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCCC-CCcccccCC-CCceeEeccccee------cCCH
Q psy667 222 FSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANG-EKFKCAYDK-SKVKLFTGKDFLH------FNGS 293 (392)
Q Consensus 222 lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~-~~~~C~~~~-~~~~~~i~~~y~~------~~~~ 293 (392)
||+|+|+||+..+.||+||++..|++|+++.|+++|++|||. + ..+.|.... ....+++. +|.. +.++
T Consensus 58 lS~q~l~dC~~~~~GC~GG~~~~a~~~~~~~Gi~~e~~yPY~---~~~~~~C~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 133 (243)
T cd02621 58 LSPQHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYT---ADDDRPCKASPSECRRYYFS-DYNYVGGCYGCTNE 133 (243)
T ss_pred cCHHHhhhhcCCCCCCCCCCHHHHHHHHHhcCcCCCceeCCC---CCCCCCCCCCcccccccccc-ceeEcccccccCCH
Confidence 999999999977899999999999999999999999999999 5 677887654 33334444 4443 3488
Q ss_pred HHHHHHHHcCCCeEEEEEcC-CCcccCCceeeCCC--CCCCC--------CCCCeEEEEEEEeecC--CccEEEEEcCCC
Q psy667 294 ETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKND--ETCSP--------YDLGHAVLLVGYGKQD--NIPYWLVRNSWG 360 (392)
Q Consensus 294 ~~ik~~l~~~gPV~v~i~~~-~f~~y~~Giy~~~~--~~c~~--------~~~~Hav~iVGyg~~~--g~~ywiikNSWG 360 (392)
++||++|+++|||+++|++. +|++|++|||..+. ..|+. ..++|||+|||||++. +.+|||||||||
T Consensus 134 ~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG 213 (243)
T cd02621 134 DEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWG 213 (243)
T ss_pred HHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCC
Confidence 99999999999999999994 89999999998751 11643 2579999999999876 899999999999
Q ss_pred CCCCCCcEEEEEecCCccccccceeEE
Q psy667 361 PIGPDEGFFKIERGNNACGIEQIAGYA 387 (392)
Q Consensus 361 ~~WG~~GY~~i~r~~n~cgi~~~~~~~ 387 (392)
++||++|||||+|+.|.|||++.+.++
T Consensus 214 ~~WGe~Gy~~i~~~~~~cgi~~~~~~~ 240 (243)
T cd02621 214 SSWGEKGYFKIRRGTNECGIESQAVFA 240 (243)
T ss_pred CCCCcCCeEEEecCCcccCcccceEee
Confidence 999999999999999999999998765
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.7e-57 Score=429.45 Aligned_cols=206 Identities=29% Similarity=0.602 Sum_probs=183.0
Q ss_pred CCCeeecccCC---CCCCCCCCC---CCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhC---Ccccc
Q psy667 152 VPDAWDWRKKN---VTGPAGDQA---ACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTG---KLVEF 222 (392)
Q Consensus 152 lP~~~Dwr~~g---~v~pVkdQg---~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~---~~~~l 222 (392)
||++||||+.+ +|+|||||| .||||||||++++ ||+++.++++ +.+.|
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~a-----------------------ies~~~i~~~~~~~~~~l 57 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSA-----------------------LADRINIARKGAWPSVYL 57 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHH-----------------------HHHHHHHHHCCCCCCccc
Confidence 69999999988 999999998 8999999999999 9999998875 36899
Q ss_pred chhhhhhhccCCCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCCCCCccccc---------------CCCCceeEecccc
Q psy667 223 SKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAY---------------DKSKVKLFTGKDF 287 (392)
Q Consensus 223 S~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~---------------~~~~~~~~i~~~y 287 (392)
|+|+|+||+. +.||+||++..|++|+++.|+++|++|||. +....|.. .+....++++ +|
T Consensus 58 S~Q~lldC~~-~~gC~GG~~~~a~~~~~~~Gl~~e~~yPY~---~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~-~~ 132 (239)
T cd02698 58 SVQVVIDCAG-GGSCHGGDPGGVYEYAHKHGIPDETCNPYQ---AKDGECNPFNRCGTCNPFGECFAIKNYTLYFVS-DY 132 (239)
T ss_pred CHHHHHhCCC-CCCccCcCHHHHHHHHHHcCcCCCCeeCCc---CCCCCCcCCCCCCCcccCcccccccccceEEee-ec
Confidence 9999999987 789999999999999988999999999998 54444542 1122346777 88
Q ss_pred eecCCHHHHHHHHHcCCCeEEEEEcC-CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecC-CccEEEEEcCCCCCCCC
Q psy667 288 LHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-NIPYWLVRNSWGPIGPD 365 (392)
Q Consensus 288 ~~~~~~~~ik~~l~~~gPV~v~i~~~-~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~-g~~ywiikNSWG~~WG~ 365 (392)
..++++++||++|.++|||+|+|.+. +|+.|++|||... .|.. .++|||+|||||+++ +++|||||||||++|||
T Consensus 133 ~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~--~~~~-~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe 209 (239)
T cd02698 133 GSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEY--VQDP-LINHIISVAGWGVDENGVEYWIVRNSWGEPWGE 209 (239)
T ss_pred eecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEccC--CCCC-cCCeEEEEEEEEecCCCCEEEEEEcCCCcccCc
Confidence 88888899999999999999999995 8999999999885 4543 689999999999876 89999999999999999
Q ss_pred CcEEEEEecC-----CccccccceeEEE
Q psy667 366 EGFFKIERGN-----NACGIEQIAGYAT 388 (392)
Q Consensus 366 ~GY~~i~r~~-----n~cgi~~~~~~~~ 388 (392)
+|||||+|+. |+||||+.++++.
T Consensus 210 ~Gy~~i~rg~~~~~~~~~~i~~~~~~~~ 237 (239)
T cd02698 210 RGWFRIVTSSYKGARYNLAIEEDCAWAD 237 (239)
T ss_pred CceEEEEccCCcccccccccccceEEEe
Confidence 9999999999 9999999999875
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=5.7e-57 Score=416.33 Aligned_cols=206 Identities=45% Similarity=0.883 Sum_probs=191.0
Q ss_pred CCeeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCCccccchhhhhhhcc
Q psy667 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAK 232 (392)
Q Consensus 153 P~~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~~~~lS~q~l~dc~~ 232 (392)
|++||||+.+.++||+|||.||+|||||++++ +|++++++++....||+|+|++|..
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~-----------------------le~~~~i~~~~~~~lS~q~l~~c~~ 57 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGA-----------------------LEGAYAIKTGKLVSLSEQQLVDCST 57 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHH-----------------------HHHHHHHHcCCCcccCHHHHhccCC
Confidence 78999999999999999999999999999999 9999999999999999999999996
Q ss_pred C-CCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCCCCCcccccCCCCceeEecccceecC--CHHHHHHHHHcCCCeEEE
Q psy667 233 Q-CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVL 309 (392)
Q Consensus 233 ~-~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~--~~~~ik~~l~~~gPV~v~ 309 (392)
. +.||+||++..|++++++.|+++|++|||. .....|........++|. +|..++ ++++||++|+++|||+++
T Consensus 58 ~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~-~~~~i~~~~~~~ik~~l~~~gPV~~~ 133 (210)
T cd02248 58 SGNNGCNGGNPDNAFEYVKNGGLASESDYPYT---GKDGTCKYNSSKVGAKIT-GYSNVPPGDEEALKAALANYGPVSVA 133 (210)
T ss_pred CCCCCCCCCCHHHhHHHHHHCCcCccccCCcc---CCCCCccCCCCcccEEEe-eEEEcCCCcHHHHHHHHhhcCCEEEE
Confidence 5 889999999999999999999999999999 677789877666788998 999887 589999999999999999
Q ss_pred EEcC-CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccccceeEE
Q psy667 310 LNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 387 (392)
Q Consensus 310 i~~~-~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG~~WG~~GY~~i~r~~n~cgi~~~~~~~ 387 (392)
+.+. +|+.|++|||..+ .|....++|||+|||||++.+.+|||||||||++||++||+||+|+.|.|||++.+.+|
T Consensus 134 ~~~~~~f~~y~~Giy~~~--~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 134 IDASSSFQFYKGGIYSGP--CCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred EecCcccccCCCCceeCC--CCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 9995 8999999999986 56455789999999999988899999999999999999999999999999999887765
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=6.1e-57 Score=424.91 Aligned_cols=207 Identities=29% Similarity=0.547 Sum_probs=176.9
Q ss_pred CCeeecccC--CC--CCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhC--Cccccchhh
Q psy667 153 PDAWDWRKK--NV--TGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTG--KLVEFSKSQ 226 (392)
Q Consensus 153 P~~~Dwr~~--g~--v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~--~~~~lS~q~ 226 (392)
|++||||++ ++ |+||+|||.||||||||++++ ||+++.++++ +.+.||+|+
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~-----------------------le~~~~i~~~~~~~~~LS~Q~ 57 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEA-----------------------FSDRLCIQSNGKENVLLSAQD 57 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHH-----------------------HhhHHHHhcCCCCccccCHHH
Confidence 889999997 44 459999999999999999999 9999999888 789999999
Q ss_pred hhhhccC-CCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCCCC---------------CcccccCCC----CceeEeccc
Q psy667 227 LVECAKQ-CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE---------------KFKCAYDKS----KVKLFTGKD 286 (392)
Q Consensus 227 l~dc~~~-~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~---------------~~~C~~~~~----~~~~~i~~~ 286 (392)
|+||+.. +.||+||++..|++|+++.|+++|++|||...... ...|..... ...+++. +
T Consensus 58 lidC~~~~~~gC~GG~~~~a~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~-~ 136 (236)
T cd02620 58 LLSCCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGK-S 136 (236)
T ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeec-c
Confidence 9999965 88999999999999998899999999999832111 113543221 2234555 5
Q ss_pred ceecC-CHHHHHHHHHcCCCeEEEEEc-CCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCC
Q psy667 287 FLHFN-GSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGP 364 (392)
Q Consensus 287 y~~~~-~~~~ik~~l~~~gPV~v~i~~-~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG~~WG 364 (392)
+..+. ++++||++|+++|||+++|.+ ++|+.|++|||..+ |+...++|||+|||||++++++|||||||||++||
T Consensus 137 ~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~~---~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WG 213 (236)
T cd02620 137 AYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHT---SGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWG 213 (236)
T ss_pred eeeeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEeec---CCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCC
Confidence 55555 789999999999999999999 58999999999863 55556899999999999889999999999999999
Q ss_pred CCcEEEEEecCCccccccceeE
Q psy667 365 DEGFFKIERGNNACGIEQIAGY 386 (392)
Q Consensus 365 ~~GY~~i~r~~n~cgi~~~~~~ 386 (392)
|+|||||+|+.|.|||++.+..
T Consensus 214 e~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 214 ENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred CCcEEEEEccCcccccccceec
Confidence 9999999999999999998764
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=7.8e-55 Score=402.78 Aligned_cols=208 Identities=38% Similarity=0.742 Sum_probs=184.3
Q ss_pred CCCeeecccC-CCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHh-CCccccchhhhhh
Q psy667 152 VPDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKT-GKLVEFSKSQLVE 229 (392)
Q Consensus 152 lP~~~Dwr~~-g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~-~~~~~lS~q~l~d 229 (392)
||++||||+. +.++||+|||.||+|||||++++ +|+++++++ +..+.||+|+|++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~-----------------------~e~~~~~~~~~~~~~lS~q~l~~ 57 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAA-----------------------LESRLAIQNNGKNVDLSEQYLID 57 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHH-----------------------HHHHHHHHHTSSCEEB-HHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccc-----------------------eeccccccccccccccccccccc
Confidence 7999999998 48999999999999999999999 999999999 7899999999999
Q ss_pred hcc-CCCCCCCCCchhhHHHHHh-CCCCCCCCCCCCCCCCCC-cccccCCCCc-eeEecccceecC--CHHHHHHHHHcC
Q psy667 230 CAK-QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEK-FKCAYDKSKV-KLFTGKDFLHFN--GSETMKKILYKY 303 (392)
Q Consensus 230 c~~-~~~gC~GG~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~-~~C~~~~~~~-~~~i~~~y~~~~--~~~~ik~~l~~~ 303 (392)
|.. .+.+|+||++..|++++++ .|+++|++|||. +.. ..|....... ..++. +|..+. ++++||++|+++
T Consensus 58 ~~~~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~pY~---~~~~~~c~~~~~~~~~~~i~-~~~~~~~~~~~~ik~~L~~~ 133 (219)
T PF00112_consen 58 CSNKYNKGCDGGSPFDALKYIKNNNGIVTEEDYPYN---GNENPTCKSKKSNSYYVKIK-GYGKVKDNDIEDIKKALMKY 133 (219)
T ss_dssp HSTGTSSTTBBBEHHHHHHHHHHHTSBEBTTTS--S---SSSSCSSCHSGGGEEEBEES-EEEEEESTCHHHHHHHHHHH
T ss_pred cccccccccccCcccccceeecccCccccccccccc---cccccccccccccccccccc-ccccccccchhHHHHHHhhC
Confidence 996 6789999999999999977 999999999999 666 6888765443 36787 888877 589999999999
Q ss_pred CCeEEEEEc-C-CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCCCCcEEEEEecCC-cccc
Q psy667 304 GPLSVLLNS-D-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN-ACGI 380 (392)
Q Consensus 304 gPV~v~i~~-~-~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG~~WG~~GY~~i~r~~n-~cgi 380 (392)
|||+++|.+ + +|+.|++|||..+ .|.+..++|||+|||||++.+++|||||||||++||++||+||+|+.+ +|||
T Consensus 134 gpV~~~~~~~~~~f~~~~~gi~~~~--~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i 211 (219)
T PF00112_consen 134 GPVVASIDVSSEDFQNYKSGIYDPP--DCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGI 211 (219)
T ss_dssp SSEEEEEEEESHHHHTEESSEECST--SSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGT
T ss_pred ceeeeeeeccccccccccceeeecc--ccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCcc
Confidence 999999999 4 4999999999997 687778999999999999999999999999999999999999999997 9999
Q ss_pred ccceeEEE
Q psy667 381 EQIAGYAT 388 (392)
Q Consensus 381 ~~~~~~~~ 388 (392)
++.++||+
T Consensus 212 ~~~~~~~~ 219 (219)
T PF00112_consen 212 ESQAVYPI 219 (219)
T ss_dssp TSSEEEEE
T ss_pred CceeeecC
Confidence 99999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=3.9e-54 Score=446.45 Aligned_cols=215 Identities=27% Similarity=0.533 Sum_probs=180.6
Q ss_pred CCCCCeeecccC----CCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCC-----c-
Q psy667 150 GPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGK-----L- 219 (392)
Q Consensus 150 ~~lP~~~Dwr~~----g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~-----~- 219 (392)
.+||++||||+. ++++||+|||.||||||||++++ +|++++|++++ .
T Consensus 379 ~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~a-----------------------lEsR~~Ia~~~~l~~~~~ 435 (693)
T PTZ00049 379 DELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYA-----------------------FKRRIEIALTKNLDKKYL 435 (693)
T ss_pred ccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHH-----------------------HHHHHHHHhccccccccc
Confidence 489999999985 57999999999999999999999 88888877632 1
Q ss_pred ----cccchhhhhhhccCCCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCCCCCcccccCCC------------------
Q psy667 220 ----VEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS------------------ 277 (392)
Q Consensus 220 ----~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~------------------ 277 (392)
..||+|+|+||+..+.||+||++..|++|+++.||++|++|||. +..+.|.....
T Consensus 436 ~~~~~~LS~QqLLDCs~~nqGC~GG~~~~A~kya~~~GI~tEscYPY~---a~~g~C~~~~~~~~~~~~g~~~~~~~~~~ 512 (693)
T PTZ00049 436 NNFDDLLSIQTVLSCSFYDQGCNGGFPYLVSKMAKLQGIPLDKVFPYT---ATEQTCPYQVDQSANSMNGSANLRQINAV 512 (693)
T ss_pred cccccCcCHHHhcccCCCCCCcCCCcHHHHHHHHHHCCCCcCCccCCc---CCCCCCCCCCCCccccccccccccccccc
Confidence 27999999999988899999999999999988899999999999 66667753211
Q ss_pred ---------------------CceeEecccceec---------CCHHHHHHHHHcCCCeEEEEEcC-CCcccCCceeeCC
Q psy667 278 ---------------------KVKLFTGKDFLHF---------NGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKN 326 (392)
Q Consensus 278 ---------------------~~~~~i~~~y~~~---------~~~~~ik~~l~~~gPV~v~i~~~-~f~~y~~Giy~~~ 326 (392)
..++.++ +|..+ .++++|+++|+++|||+|+|++. +|++|++|||..+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~r~y~k-~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~ 591 (693)
T PTZ00049 513 FFSSETQSDMHADFEAPISSEPARWYAK-DYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVE 591 (693)
T ss_pred cccccccccccccccccccccccceeee-eeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCc
Confidence 1123344 55554 26889999999999999999995 8999999999864
Q ss_pred C----CCCCCC--------------CCCeEEEEEEEeec--CCc--cEEEEEcCCCCCCCCCcEEEEEecCCccccccce
Q psy667 327 D----ETCSPY--------------DLGHAVLLVGYGKQ--DNI--PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 384 (392)
Q Consensus 327 ~----~~c~~~--------------~~~Hav~iVGyg~~--~g~--~ywiikNSWG~~WG~~GY~~i~r~~n~cgi~~~~ 384 (392)
+ ..|+.. ..+|||+|||||.+ +|. +|||||||||++||++|||||+||.|.|||++.+
T Consensus 592 ~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a 671 (693)
T PTZ00049 592 DFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQS 671 (693)
T ss_pred ccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccce
Confidence 1 136421 46999999999975 453 7999999999999999999999999999999999
Q ss_pred eEEEEEe
Q psy667 385 GYATIDV 391 (392)
Q Consensus 385 ~~~~~~~ 391 (392)
.++..|+
T Consensus 672 ~~~~pd~ 678 (693)
T PTZ00049 672 LFIEPDF 678 (693)
T ss_pred eEEeeec
Confidence 9998775
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.2e-53 Score=438.35 Aligned_cols=215 Identities=22% Similarity=0.466 Sum_probs=179.9
Q ss_pred CCCCCeeecccCC---CCCCCCCCCC---CchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHh------C
Q psy667 150 GPVPDAWDWRKKN---VTGPAGDQAA---CGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKT------G 217 (392)
Q Consensus 150 ~~lP~~~Dwr~~g---~v~pVkdQg~---cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~------~ 217 (392)
.+||++||||++| +|+||||||. ||||||||++++ +|+++++++ +
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~a-----------------------lEsr~~I~tn~~~~~g 259 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAA-----------------------MMARVMVASNRTDPLG 259 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHH-----------------------HHHHHHHHhCCCcccC
Confidence 5799999999987 7899999999 999999999999 999999987 4
Q ss_pred CccccchhhhhhhccCCCCCCCCCchhhHHHHHhCCCCCCCCC--CCCCCCCCCcccccCCCCceeEecc-----cceec
Q psy667 218 KLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDY--PYKNANGEKFKCAYDKSKVKLFTGK-----DFLHF 290 (392)
Q Consensus 218 ~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~C~~~~~~~~~~i~~-----~y~~~ 290 (392)
+.+.||+|+|+||+..++||+||++..|++|++++||++|++| ||....+....|........+++.+ +|..+
T Consensus 260 ~~~~LS~QqLVDCs~~n~GCdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~ 339 (548)
T PTZ00364 260 QQTFLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGA 339 (548)
T ss_pred cccCcCHHHHhcccCCCCCCCCCcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeec
Confidence 5789999999999977899999999999999988999999999 9983222233687655444444440 34333
Q ss_pred C-CHHHHHHHHHcCCCeEEEEEcC-CCcccCCceeeCC-----C-CCCC----------CCCCCeEEEEEEEee-cCCcc
Q psy667 291 N-GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKN-----D-ETCS----------PYDLGHAVLLVGYGK-QDNIP 351 (392)
Q Consensus 291 ~-~~~~ik~~l~~~gPV~v~i~~~-~f~~y~~Giy~~~-----~-~~c~----------~~~~~Hav~iVGyg~-~~g~~ 351 (392)
. ++++|+.+|+++|||+|+|++. +|+.|++|||.+. + ..|. ....+|||+|||||. ++|.+
T Consensus 340 ~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~ 419 (548)
T PTZ00364 340 VTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGD 419 (548)
T ss_pred CCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCce
Confidence 3 7889999999999999999994 8999999998631 0 0111 135799999999997 47889
Q ss_pred EEEEEcCCCC--CCCCCcEEEEEecCCccccccceeEE
Q psy667 352 YWLVRNSWGP--IGPDEGFFKIERGNNACGIEQIAGYA 387 (392)
Q Consensus 352 ywiikNSWG~--~WG~~GY~~i~r~~n~cgi~~~~~~~ 387 (392)
|||||||||+ +|||+|||||+||.|+|||++.+..+
T Consensus 420 YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~ 457 (548)
T PTZ00364 420 YWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVM 457 (548)
T ss_pred EEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeee
Confidence 9999999999 99999999999999999999998844
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.3e-49 Score=358.44 Aligned_cols=166 Identities=46% Similarity=0.947 Sum_probs=152.4
Q ss_pred CCCeeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCCccccchhhhhhhc
Q psy667 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECA 231 (392)
Q Consensus 152 lP~~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~~~~lS~q~l~dc~ 231 (392)
||++||||+.++++||+|||.||+|||||++++ +|+++++++++.+.||+|+|++|.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~-----------------------ie~~~~i~~~~~~~lS~q~l~~C~ 57 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGA-----------------------LEGRYCIKTGKLVSLSEQQLVDCS 57 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHH-----------------------HHHHHHHhcCCccccCHHHHhhhc
Confidence 699999999999999999999999999999999 999999999989999999999999
Q ss_pred cC-CCCCCCCCchhhHHHHHhC-CCCCCCCCCCCCCCCCCcccccCCCCceeEecccceecCCHHHHHHHHHcCCCeEEE
Q psy667 232 KQ-CSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVL 309 (392)
Q Consensus 232 ~~-~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~~~~ik~~l~~~gPV~v~ 309 (392)
.. +.||+||++..|++|+++. |+++|++|||. + ++.
T Consensus 58 ~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~---~---------------------------------------~~~ 95 (174)
T smart00645 58 TGGNNGCNGGLPDNAFEYIKKNGGLETESCYPYT---G---------------------------------------SVA 95 (174)
T ss_pred CCCCCCCCCcCHHHHHHHHHHcCCcccccccCcc---c---------------------------------------EEE
Confidence 64 6799999999999999776 99999999999 3 556
Q ss_pred EEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeec-CCccEEEEEcCCCCCCCCCcEEEEEecC-Cccccccce
Q psy667 310 LNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 384 (392)
Q Consensus 310 i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~-~g~~ywiikNSWG~~WG~~GY~~i~r~~-n~cgi~~~~ 384 (392)
+.+++|++|++|||+.+ .|+...++|||+|||||.+ ++++|||||||||+.||++|||||.|+. |.|||+...
T Consensus 96 ~~~~~f~~Y~~Gi~~~~--~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 96 IDASDFQFYKSGIYDHP--GCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred EEcccccCCcCeEECCC--CCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 66667999999999886 6876568999999999987 8899999999999999999999999998 999997654
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=2.7e-46 Score=346.34 Aligned_cols=196 Identities=29% Similarity=0.375 Sum_probs=167.9
Q ss_pred eeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhC--Cccccchhhhhhhcc
Q psy667 155 AWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTG--KLVEFSKSQLVECAK 232 (392)
Q Consensus 155 ~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~--~~~~lS~q~l~dc~~ 232 (392)
.+|||+.+ ++||+|||.||+|||||++++ +|+.+.++++ +.+.||+|+|++|..
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~-----------------------les~~~~~~~~~~~~~lS~q~l~~c~~ 56 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYA-----------------------LESAYRIKGGEDEYVDLSPQYLYICAN 56 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHH-----------------------HHHHHHHhcCCcccccCCHHHHHHhcc
Confidence 48999998 999999999999999999999 9999999988 899999999999984
Q ss_pred C-----CCCCCCCCchhhHH-HHHhCCCCCCCCCCCCCCCCCCccccc----CCCCceeEecccceecC--CHHHHHHHH
Q psy667 233 Q-----CSGCDGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAY----DKSKVKLFTGKDFLHFN--GSETMKKIL 300 (392)
Q Consensus 233 ~-----~~gC~GG~~~~a~~-~~~~~Gi~~e~~yPY~~~~~~~~~C~~----~~~~~~~~i~~~y~~~~--~~~~ik~~l 300 (392)
. ..||+||.+..++. +++..|+++|++|||. .....|.. .......++. +|..+. ++++||++|
T Consensus 57 ~~~~~~~~~c~gG~~~~~~~~~~~~~Gi~~e~~~Py~---~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~ik~aL 132 (223)
T cd02619 57 DECLGINGSCDGGGPLSALLKLVALKGIPPEEDYPYG---AESDGEEPKSEAALNAAKVKLK-DYRRVLKNNIEDIKEAL 132 (223)
T ss_pred ccccccCCCCCCCcHHHHHHHHHHHcCCCccccCCCC---CCCCCCCCCCccchhhcceeec-ceeEeCchhHHHHHHHH
Confidence 3 37999999999998 8899999999999999 55555542 2334557787 888877 579999999
Q ss_pred HcCCCeEEEEEcC-CCcccCCceee---CCCCCCCCCCCCeEEEEEEEeecC--CccEEEEEcCCCCCCCCCcEEEEEec
Q psy667 301 YKYGPLSVLLNSD-LIHDYNGTPIR---KNDETCSPYDLGHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERG 374 (392)
Q Consensus 301 ~~~gPV~v~i~~~-~f~~y~~Giy~---~~~~~c~~~~~~Hav~iVGyg~~~--g~~ywiikNSWG~~WG~~GY~~i~r~ 374 (392)
+++|||++++.+. .|..|++|+|. .....|....++|||+|||||++. +++|||||||||+.||++||+||+++
T Consensus 133 ~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~ 212 (223)
T cd02619 133 AKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYE 212 (223)
T ss_pred HHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehh
Confidence 9999999999995 89999999973 111145555789999999999976 89999999999999999999999997
Q ss_pred CCccc
Q psy667 375 NNACG 379 (392)
Q Consensus 375 ~n~cg 379 (392)
+.+.
T Consensus 213 -~~~~ 216 (223)
T cd02619 213 -DVYE 216 (223)
T ss_pred -hhhh
Confidence 3443
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=7.9e-46 Score=394.17 Aligned_cols=201 Identities=23% Similarity=0.422 Sum_probs=166.2
Q ss_pred CCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCCccccchhhhhhhcc--CCCCCCCCC
Q psy667 164 TGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCDGCF 241 (392)
Q Consensus 164 v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~~~~lS~q~l~dc~~--~~~gC~GG~ 241 (392)
..||+|||.||||||||++++ +|+++++++++.+.||+|+|+||+. .+.||.||+
T Consensus 544 ~i~VKDQG~CGSCWAFASaaa-----------------------LES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~ 600 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYH-----------------------LETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGS 600 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHH-----------------------HHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCC
Confidence 579999999999999999999 9999999999999999999999983 478999997
Q ss_pred ch-hhHHHHHh-CCCCCCCCCCCCCCCCCCcccccCCC------------------CceeEecccceecCC---------
Q psy667 242 FE-PSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS------------------KVKLFTGKDFLHFNG--------- 292 (392)
Q Consensus 242 ~~-~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~------------------~~~~~i~~~y~~~~~--------- 292 (392)
.. .++.|+++ +|+++|++|||... +..+.|+.... .....+. +|..+..
T Consensus 601 ~~~efl~yI~e~GgLptESdYPYt~k-~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~k-gY~~~~s~~~~~n~d~ 678 (1004)
T PTZ00462 601 NPLEFLQIIEDNGFLPADSNYLYNYT-KVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGK-AYRAYESEHFHDKMDA 678 (1004)
T ss_pred cHHHHHHHHHHcCCCcccccCCCccC-CCCCCCCCCcccccccccccccccccccccceeecc-ceEEecccccccchhh
Confidence 55 56688855 46899999999721 14457864321 0123344 6655531
Q ss_pred -HHHHHHHHHcCCCeEEEEEcCCCcccC-CceeeCCCCCCCCCCCCeEEEEEEEeec-----CCccEEEEEcCCCCCCCC
Q psy667 293 -SETMKKILYKYGPLSVLLNSDLIHDYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ-----DNIPYWLVRNSWGPIGPD 365 (392)
Q Consensus 293 -~~~ik~~l~~~gPV~v~i~~~~f~~y~-~Giy~~~~~~c~~~~~~Hav~iVGyg~~-----~g~~ywiikNSWG~~WG~ 365 (392)
++.||++|+++|||+|+|++++|+.|. +|||... .|+...++|||+|||||.+ .+++|||||||||+.||+
T Consensus 679 ~i~~IK~eI~~kGPVaV~IdAsdf~~Y~~sGIyv~~--~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGE 756 (1004)
T PTZ00462 679 FIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQN--LCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGD 756 (1004)
T ss_pred HHHHHHHHHHhcCCEEEEEEeehHHhhhcCCccccC--CCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCC
Confidence 468999999999999999998888884 8998776 7986678999999999974 257999999999999999
Q ss_pred CcEEEEEe-cCCccccccceeEEEEEe
Q psy667 366 EGFFKIER-GNNACGIEQIAGYATIDV 391 (392)
Q Consensus 366 ~GY~~i~r-~~n~cgi~~~~~~~~~~~ 391 (392)
+|||||.| +.|.|||+....+|+|++
T Consensus 757 nGYFKI~r~g~n~CGin~i~t~~~fn~ 783 (1004)
T PTZ00462 757 EGYFKVDMYGPSHCEDNFIHSVVIFNI 783 (1004)
T ss_pred CeEEEEEeCCCCCCccchheeeeeEee
Confidence 99999998 689999999999999975
No 16
>KOG1544|consensus
Probab=100.00 E-value=8e-43 Score=327.50 Aligned_cols=255 Identities=24% Similarity=0.412 Sum_probs=192.0
Q ss_pred CcCCCCChHHHhhhcCccccccchhhhhhhhhHHHHHhhhccCCCCCCCeeecccC--CCCCCCCCCCCCchhhhHhhhh
Q psy667 106 SEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK--NVTGPAGDQAACGSCWAFSIAG 183 (392)
Q Consensus 106 N~FsDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~v~pVkdQg~cgsCwAfa~~~ 183 (392)
.+|-.||.++- -+.-++.-++..... ..+.+...+++..+||+.||-|.+ +++.||.|||+|++.|||++++
T Consensus 169 SaFWGmtL~DG--iKyRLGTL~Ps~sv~----nMNEi~~~l~p~~~LPE~F~As~KWp~liH~plDQgnCa~SWafSTaa 242 (470)
T KOG1544|consen 169 SAFWGMTLDDG--IKYRLGTLRPSSSVM----NMNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLDQGNCAGSWAFSTAA 242 (470)
T ss_pred hhhhccccccc--ceeeecccCchhhhh----hHHhHhhccCcccccchhhhhhhcCCccccCccccCCcccceeeeeeh
Confidence 47778887764 222233322211111 112222233444689999999998 5899999999999999999999
Q ss_pred hhhhhHHhhhcccchhhhcccccchhHHHHHHhCCccccchhhhhhhc-cCCCCCCCCCchhhHHHHHhCCCCCCCCCCC
Q psy667 184 KFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECA-KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY 262 (392)
Q Consensus 184 ~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~~~~lS~q~l~dc~-~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY 262 (392)
. -+||+-|. -++++ ...||+|+|++|. ....||+||+.+.|+-|+.+.|++...+|||
T Consensus 243 v----------asDRiAI~-----S~GR~------t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKrGvVsdhCYP~ 301 (470)
T KOG1544|consen 243 V----------ASDRVAIH-----SLGRM------TPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKRGVVSDHCYPF 301 (470)
T ss_pred h----------ccceeEEe-----ecccc------ccccChHHhcchhhhhhccCccCcccchheeeecccccccccccc
Confidence 8 34665544 33333 6789999999999 5668999999999999999999999999999
Q ss_pred CCC-CCCCcccccCC--------------------CCceeEecccceecCCHHHHHHHHHcCCCeEEEEEc-CCCcccCC
Q psy667 263 KNA-NGEKFKCAYDK--------------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS-DLIHDYNG 320 (392)
Q Consensus 263 ~~~-~~~~~~C~~~~--------------------~~~~~~i~~~y~~~~~~~~ik~~l~~~gPV~v~i~~-~~f~~y~~ 320 (392)
... ++..+.|...+ ++..++++.-|..-+++++|++.|+++|||.+.+.| .+|..|++
T Consensus 302 ~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~Ykg 381 (470)
T KOG1544|consen 302 SGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKG 381 (470)
T ss_pred cCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Confidence 742 22333443221 223455553444444999999999999999999999 69999999
Q ss_pred ceeeCCCCCCCC-----CCCCeEEEEEEEeecC-----CccEEEEEcCCCCCCCCCcEEEEEecCCccccccceeEE
Q psy667 321 TPIRKNDETCSP-----YDLGHAVLLVGYGKQD-----NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 387 (392)
Q Consensus 321 Giy~~~~~~c~~-----~~~~Hav~iVGyg~~~-----g~~ywiikNSWG~~WG~~GY~~i~r~~n~cgi~~~~~~~ 387 (392)
|||.+.+..-.. ..+.|+|.|.|||++. ..+|||..||||+.|||+|||||-||.|.|.||++++.+
T Consensus 382 GiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgA 458 (470)
T KOG1544|consen 382 GIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGA 458 (470)
T ss_pred ceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhh
Confidence 999986422221 2678999999999863 368999999999999999999999999999999987654
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.1e-28 Score=232.06 Aligned_cols=191 Identities=25% Similarity=0.356 Sum_probs=129.8
Q ss_pred CCCCeeecccCCCCCCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhCCccccchhhh---
Q psy667 151 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQL--- 227 (392)
Q Consensus 151 ~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~~~~~lS~q~l--- 227 (392)
.+|+.||||..|-|+||||||.||+||||+++++ +|+...-.. ...+|+-.+
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~s-----------------------les~l~~~~--~w~~s~~nm~~l 152 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRS-----------------------LESYLNPES--AWDFSENNMKNL 152 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhh-----------------------hhheecccc--cccccccchhhh
Confidence 5899999999999999999999999999999999 777662222 233443332
Q ss_pred --hhhc-cCCCC-CCCCCchhhHHHH-HhCCCCCCCCCCCCCCCCCCcccccCCCCceeEecccceecC------CHHHH
Q psy667 228 --VECA-KQCSG-CDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN------GSETM 296 (392)
Q Consensus 228 --~dc~-~~~~g-C~GG~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~------~~~~i 296 (392)
+-|. ....+ -+||....+..|+ +..|-+.+.+-||. .....|..... ...++. .-..++ +.-.|
T Consensus 153 l~~~ye~~fd~~~~d~g~~~m~~a~l~e~sgpv~et~d~y~---~~s~~~~~~~p-~~k~~~-~~~~i~~~~~~LdnG~i 227 (372)
T COG4870 153 LGVPYEKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYS---ENSYFSPTNLP-VTKHVQ-EAQIIPSRKKYLDNGNI 227 (372)
T ss_pred cCCCccccCCCccccCCccccccccccccCCcchhhcCccc---cccccCCcCCc-hhhccc-cceecccchhhhcccch
Confidence 3332 11111 1267777777777 78899999999998 44444443211 111111 112222 34458
Q ss_pred HHHHHcCCCeEEEEEcC--CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeec----------CCccEEEEEcCCCCCCC
Q psy667 297 KKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----------DNIPYWLVRNSWGPIGP 364 (392)
Q Consensus 297 k~~l~~~gPV~v~i~~~--~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~----------~g~~ywiikNSWG~~WG 364 (392)
++++..+|-+...|.++ .+..-..+.|... +....+|||+||||++. .|.+.||||||||++||
T Consensus 228 ~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~~----s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG 303 (372)
T COG4870 228 KAMFGFYGAVSSSMYIDATNSLGICIPYPYVD----SGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWG 303 (372)
T ss_pred HHHHhhhccccceeEEecccccccccCCCCCC----ccccccceEEEEeccccccccccccCCCCCceEEEECccccccc
Confidence 88998889888666553 3333333444432 22478999999999985 25679999999999999
Q ss_pred CCcEEEEEecC
Q psy667 365 DEGFFKIERGN 375 (392)
Q Consensus 365 ~~GY~~i~r~~ 375 (392)
++|||||++..
T Consensus 304 ~~GYfwisY~y 314 (372)
T COG4870 304 ENGYFWISYYY 314 (372)
T ss_pred cCceEEEEeee
Confidence 99999999975
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.90 E-value=3.3e-23 Score=209.29 Aligned_cols=186 Identities=22% Similarity=0.273 Sum_probs=134.7
Q ss_pred CCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHH-hCCccccchhhhhhhc------------
Q psy667 165 GPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIK-TGKLVEFSKSQLVECA------------ 231 (392)
Q Consensus 165 ~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~-~~~~~~lS~q~l~dc~------------ 231 (392)
.||+||+.-|.||.||+... ++..+..+ +.+.+.||+.++.--+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~-----------------------lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~i 111 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNV-----------------------LRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENI 111 (437)
T ss_pred CCcccCCCCchhHHHHCHHH-----------------------HHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999 99987664 5578999998776421
Q ss_pred ----------------cCCCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCCC------------------------CCc-
Q psy667 232 ----------------KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANG------------------------EKF- 270 (392)
Q Consensus 232 ----------------~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~------------------------~~~- 270 (392)
......+||....+...++++|+++.+.||-..... ..+
T Consensus 112 i~~~~~~~~~R~v~~ll~~~~~DGGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~ 191 (437)
T cd00585 112 IETADEPLDDRLVQFLLANPQNDGGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGA 191 (437)
T ss_pred HHHhcCCCccHHHHHHHhCCcCCCCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 135567899999999999999999999999652200 000
Q ss_pred -cc---------------------------------------------------------cc--------CCC-----Cc
Q psy667 271 -KC---------------------------------------------------------AY--------DKS-----KV 279 (392)
Q Consensus 271 -~C---------------------------------------------------------~~--------~~~-----~~ 279 (392)
.. .. .+. ..
T Consensus 192 ~~~~l~~~~~~~~~~iy~il~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~ 271 (437)
T cd00585 192 SKEEIEAKKEEMLKEVYRILAIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNK 271 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCc
Confidence 00 00 000 00
Q ss_pred eeEec-------c---cceecCCHHHHH----HHHHcCCCeEEEEEcCCCcccCCceeeCCCC-----------------
Q psy667 280 KLFTG-------K---DFLHFNGSETMK----KILYKYGPLSVLLNSDLIHDYNGTPIRKNDE----------------- 328 (392)
Q Consensus 280 ~~~i~-------~---~y~~~~~~~~ik----~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~----------------- 328 (392)
.+.+. . .|.++ ..+.|+ ++|.+++||.++++++.|..|++||+.....
T Consensus 272 ~y~ve~~~Nv~~g~~~~y~Nv-p~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeR 350 (437)
T cd00585 272 LYTVEYLGNVVGGRPILYLNV-PMDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAER 350 (437)
T ss_pred eEEEecCCcccccccceEEec-CHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHH
Confidence 01111 0 23333 334444 6788899999999998888999999965310
Q ss_pred -CCCCCCCCeEEEEEEEeecC-Cc-cEEEEEcCCCCCCCCCcEEEEEec
Q psy667 329 -TCSPYDLGHAVLLVGYGKQD-NI-PYWLVRNSWGPIGPDEGFFKIERG 374 (392)
Q Consensus 329 -~c~~~~~~Hav~iVGyg~~~-g~-~ywiikNSWG~~WG~~GY~~i~r~ 374 (392)
.|.....+|||+|||||.+. |+ .||+||||||+.||++||++|+++
T Consensus 351 l~~~es~~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 351 LDYGESLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred HhhcCCcCCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 13333678999999999754 65 699999999999999999999875
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.64 E-value=1.8e-15 Score=153.26 Aligned_cols=187 Identities=21% Similarity=0.323 Sum_probs=113.5
Q ss_pred CCCCCCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHHHHHhC-Cccccchhhhh---------------
Q psy667 165 GPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTG-KLVEFSKSQLV--------------- 228 (392)
Q Consensus 165 ~pVkdQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~~~~~~-~~~~lS~q~l~--------------- 228 (392)
.||.||+.-|.||.||+... ++..+..+.+ +...||+-+|.
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~-----------------------lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~i 112 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNV-----------------------LRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENI 112 (438)
T ss_dssp -S--B--BSSTHHHHHHHHH-----------------------HHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcchhhchHH-----------------------HHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999 9988877765 78999998875
Q ss_pred -hhc------------cCCCCCCCCCchhhHHHHHhCCCCCCCCCCCCCCC---------------------------CC
Q psy667 229 -ECA------------KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNAN---------------------------GE 268 (392)
Q Consensus 229 -dc~------------~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~---------------------------~~ 268 (392)
++. ......+||....+...++++|+++.+.||-.... +.
T Consensus 113 i~~~~~~~d~R~v~~ll~~~~~DGGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~ 192 (438)
T PF03051_consen 113 IDTADEPLDDRLVRFLLKNPVSDGGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGK 192 (438)
T ss_dssp HHCCTS-TTSHHHHHHHHSTT-S-B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCcchHHHHHHHhcCCCCCCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 221 11345779999999999999999999999976321 00
Q ss_pred C-----------------------cccc------c-CCC---------------------------------------Cc
Q psy667 269 K-----------------------FKCA------Y-DKS---------------------------------------KV 279 (392)
Q Consensus 269 ~-----------------------~~C~------~-~~~---------------------------------------~~ 279 (392)
. |.++ . ++. ..
T Consensus 193 ~~~~l~~~k~~~l~~iy~il~~~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~ 272 (438)
T PF03051_consen 193 SEEELRKLKEEMLAEIYRILAIYLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNK 272 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccce
Confidence 0 0000 0 000 01
Q ss_pred eeEecc----------cceecC---CHHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCC-----------------
Q psy667 280 KLFTGK----------DFLHFN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET----------------- 329 (392)
Q Consensus 280 ~~~i~~----------~y~~~~---~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~----------------- 329 (392)
.+.+.- .|.+++ =.+.+.++|.++.||..+-+++.+...+.||.+..-..
T Consensus 273 ~y~ve~~~Nv~~g~~~~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl 352 (438)
T PF03051_consen 273 LYTVEYLGNVVGGRPVRYLNVPIDELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERL 352 (438)
T ss_dssp EEEETTTTSSTT-EEEEEEE--HHHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHH
T ss_pred eEEEccCCCEECCcceeEeccCHHHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHH
Confidence 111110 133444 12456778888899999999987677788987653110
Q ss_pred -CCCCCCCeEEEEEEEee-cCCc-cEEEEEcCCCCCCCCCcEEEEEec
Q psy667 330 -CSPYDLGHAVLLVGYGK-QDNI-PYWLVRNSWGPIGPDEGFFKIERG 374 (392)
Q Consensus 330 -c~~~~~~Hav~iVGyg~-~~g~-~ywiikNSWG~~WG~~GY~~i~r~ 374 (392)
......+|||+|||.+. ++|+ .+|+|+||||+..|.+||+.|+..
T Consensus 353 ~~~eS~~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 353 DYGESTMTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp HTTSS--EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred HhCCCCCceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 01125689999999997 5665 599999999999999999999863
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.42 E-value=2.3e-13 Score=100.29 Aligned_cols=49 Identities=39% Similarity=0.692 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCcCChHHHHHHHHHHHHHHH--hhh-------hhccCCcCCCCChHHH
Q psy667 68 FKAFIVKRGRQYANDEEIKERFEYFKQDGH--KKH-------ERYGTSEFSDRSPEEI 116 (392)
Q Consensus 68 F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h-------~~lgiN~FsDlT~eEf 116 (392)
|++|+++|+|.|.+.+|+..|+.+|++|++ ++| |++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999 555 8899999999999998
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.18 E-value=2.1e-11 Score=89.15 Aligned_cols=48 Identities=35% Similarity=0.630 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCcCChHHHHHHHHHHHHHHH--hhh-------hhccCCcCCCCChHH
Q psy667 68 FKAFIVKRGRQYANDEEIKERFEYFKQDGH--KKH-------ERYGTSEFSDRSPEE 115 (392)
Q Consensus 68 F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~--~~h-------~~lgiN~FsDlT~eE 115 (392)
|++|+.+|+|.|.+.+|...|+.+|++|++ +.| |++|+|+|||||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999 555 889999999999987
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.69 E-value=3.4e-08 Score=94.97 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=54.7
Q ss_pred HHHcCCCeEEEEEcCCCcccCCceeeCCCC------------------CCCCCCCCeEEEEEEEeec-CC-ccEEEEEcC
Q psy667 299 ILYKYGPLSVLLNSDLIHDYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYGKQ-DN-IPYWLVRNS 358 (392)
Q Consensus 299 ~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~------------------~c~~~~~~Hav~iVGyg~~-~g-~~ywiikNS 358 (392)
.+..+-||-.+-++..+..-+.||....-. ..+.....|||+|.|.+.+ +| .-=|.|.||
T Consensus 307 q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkVENS 386 (444)
T COG3579 307 QMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKVENS 386 (444)
T ss_pred HHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEeecc
Confidence 345577999999998888888887643210 0011145799999999854 44 346999999
Q ss_pred CCCCCCCCcEEEEEe
Q psy667 359 WGPIGPDEGFFKIER 373 (392)
Q Consensus 359 WG~~WG~~GY~~i~r 373 (392)
||..=|.+|||-++-
T Consensus 387 WG~d~G~~GyfvaSd 401 (444)
T COG3579 387 WGKDVGKKGYFVASD 401 (444)
T ss_pred cccccCCCceEeehH
Confidence 999999999998763
No 23
>KOG4128|consensus
Probab=96.70 E-value=0.0008 Score=65.23 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=53.1
Q ss_pred CHHHHHHHH----HcCCCeEEEEEcCCCcccCCceeeCCCC-----------CCC--------CCCCCeEEEEEEEee-c
Q psy667 292 GSETMKKIL----YKYGPLSVLLNSDLIHDYNGTPIRKNDE-----------TCS--------PYDLGHAVLLVGYGK-Q 347 (392)
Q Consensus 292 ~~~~ik~~l----~~~gPV~v~i~~~~f~~y~~Giy~~~~~-----------~c~--------~~~~~Hav~iVGyg~-~ 347 (392)
+.+.|++.+ ..+-||-.+-++..+..-++|+.+-.-- .-. .....||+++.|-|. +
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~kd 384 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIRKAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGLKD 384 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccHhhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccccC
Confidence 456666554 3456888888776666667775432100 000 113579999999883 2
Q ss_pred ---CCccEEEEEcCCCCCCCCCcEEEEE
Q psy667 348 ---DNIPYWLVRNSWGPIGPDEGFFKIE 372 (392)
Q Consensus 348 ---~g~~ywiikNSWG~~WG~~GY~~i~ 372 (392)
.+-.-|-|.||||.+-|-+||..|.
T Consensus 385 ~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 385 PATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cccCCchhhhhhchhhhhccccchhhhh
Confidence 3445699999999999999996653
No 24
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=95.27 E-value=0.19 Score=44.93 Aligned_cols=120 Identities=20% Similarity=0.243 Sum_probs=69.6
Q ss_pred CCCCCchhhhHhhhhhhhhhHHhhhcccchhhhcccccchhHHH--------HHHhCCccccchhhhhhhccCCCCCCCC
Q psy667 169 DQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY--------AIKTGKLVEFSKSQLVECAKQCSGCDGC 240 (392)
Q Consensus 169 dQg~cgsCwAfa~~~~~~~~~~~~~~~~dr~c~~~~~~~le~~~--------~~~~~~~~~lS~q~l~dc~~~~~gC~GG 240 (392)
.||.-+=|-+|+.++. |.... .+-..-...+|+++|.+++.
T Consensus 18 tQg~~pWCa~Ya~aai-----------------------lN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~-------- 66 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAI-----------------------LNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL-------- 66 (175)
T ss_dssp --SSSS-HHHHHHHHH-----------------------HHHHCT-S---HHHHHHHHSTTS-CCCHHH--B--------
T ss_pred ccCcCcHHHHHHHHHH-----------------------HHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC--------
Confidence 4888899999999998 33221 11122256788888877642
Q ss_pred CchhhHHHHHhCCCCCCCCCCCCCCCCCCcccccCCCCceeEecccceecCCHHHHHHHHHcCCCeEEEEEcCCCcccCC
Q psy667 241 FFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNG 320 (392)
Q Consensus 241 ~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~~~~ik~~l~~~gPV~v~i~~~~f~~y~~ 320 (392)
.+...++|.+..|... . --...++.+++++.+.++-|+.+..+.- .+
T Consensus 67 ~~~~~i~y~ks~g~~~---------------------------~-~~n~~~s~~eV~~~~~~nk~i~i~~~~v-----~~ 113 (175)
T PF05543_consen 67 TPNQMIKYAKSQGRNP---------------------------Q-YNNRMPSFDEVKKLIDNNKGIAILADRV-----EQ 113 (175)
T ss_dssp -HHHHHHHHHHTTEEE---------------------------E-EECS---HHHHHHHHHTT-EEEEEEEET-----TS
T ss_pred CHHHHHHHHHHcCcch---------------------------h-HhcCCCCHHHHHHHHHcCCCeEEEeccc-----cc
Confidence 3457777776544311 0 0011226789999999989998876531 11
Q ss_pred ceeeCCCCCCCCCCCCeEEEEEEEee-cCCccEEEEEcCCCC
Q psy667 321 TPIRKNDETCSPYDLGHAVLLVGYGK-QDNIPYWLVRNSWGP 361 (392)
Q Consensus 321 Giy~~~~~~c~~~~~~Hav~iVGyg~-~~g~~ywiikNSWG~ 361 (392)
. .....+||++||||-. .+|.++.++=|-|-.
T Consensus 114 --------~-~~~~~gHAlavvGya~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 114 --------T-NGPHAGHALAVVGYAKPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp --------C-TTB--EEEEEEEEEEEETTSEEEEEEE-TT-S
T ss_pred --------C-CCCccceeEEEEeeeecCCCCeEEEEeCCccC
Confidence 1 1225789999999987 567899999999854
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=95.21 E-value=0.06 Score=45.26 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=35.0
Q ss_pred CHHHHHHHHHcCCCeEEEEEcC--CCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCC
Q psy667 292 GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSW 359 (392)
Q Consensus 292 ~~~~ik~~l~~~gPV~v~i~~~--~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSW 359 (392)
+.+.|++.|.++.||.+.+... .. .++.+.. ...+|.|+|+||+.+. +++|..+|
T Consensus 88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~~-------~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 88 SFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYDG-------TYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp -HHHHHHHHHTT--EEEEEETTSS-----TTEEEEE--------TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred cHHHHHHHHHCCCcEEEEEEcccccC---CCCCcCC-------CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 6789999999999999999742 11 1222322 2578999999999743 78888877
No 26
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=89.22 E-value=1.4 Score=40.84 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=40.6
Q ss_pred CHHHHHHHHHcCCCeEEEEEcCCCc--ccCCceeeCCCCCC---CCCCCCeEEEEEEEeecCCccEEEEEc
Q psy667 292 GSETMKKILYKYGPLSVLLNSDLIH--DYNGTPIRKNDETC---SPYDLGHAVLLVGYGKQDNIPYWLVRN 357 (392)
Q Consensus 292 ~~~~ik~~l~~~gPV~v~i~~~~f~--~y~~Giy~~~~~~c---~~~~~~Hav~iVGyg~~~g~~ywiikN 357 (392)
+.++|...|..+||+.+.++..-+. .-+..........| .+...+|-|+|+||+...+ =++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~--~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATK--EFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCCCC--eEEEeC
Confidence 7889999999999999999886332 11222221110022 1336799999999997543 355555
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=83.79 E-value=3.3 Score=40.21 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=37.6
Q ss_pred CHHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEc
Q psy667 292 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRN 357 (392)
Q Consensus 292 ~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikN 357 (392)
..+.|++.|.++.||.+.++.-.+. |...-| .....+|.|+|+||++++ ..|.++-+
T Consensus 77 ~~~~l~~~l~~g~pv~~~~D~~~lp-y~~~~~-------~~~~~~H~i~v~G~d~~~-~~~~v~D~ 133 (317)
T PF14399_consen 77 AWEELKEALDAGRPVIVWVDMYYLP-YRPNYY-------KKHHADHYIVVYGYDEEE-DVFYVSDP 133 (317)
T ss_pred HHHHHHHHHhCCCceEEEeccccCC-CCcccc-------ccccCCcEEEEEEEeCCC-CEEEEEcC
Confidence 4568999999888999998763222 222111 122568999999999743 34666544
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.04 E-value=8.4 Score=34.79 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=36.4
Q ss_pred CHHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCC
Q psy667 292 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWG 360 (392)
Q Consensus 292 ~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG 360 (392)
+..+||..|.++.||.+-... |.. ..-|+|+|.||++ .++..-++||
T Consensus 122 sl~~ik~ql~kg~PV~iw~T~--~~~----------------~s~H~v~itgyDk----~n~yynDpyG 168 (195)
T COG4990 122 SLSDIKGQLLKGRPVVIWVTN--FHS----------------YSIHSVLITGYDK----YNIYYNDPYG 168 (195)
T ss_pred cHHHHHHHHhcCCcEEEEEec--ccc----------------cceeeeEeecccc----cceEeccccc
Confidence 789999999999999977653 221 2359999999996 4677777775
No 29
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=64.08 E-value=20 Score=29.91 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=31.8
Q ss_pred HHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCC
Q psy667 296 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSW 359 (392)
Q Consensus 296 ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSW 359 (392)
+++.|....||.+.++.+ .+ ....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~-----------~~-----~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG-----------VS-----ITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC-----------cc-----cCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 788999899999988751 11 124689999999981 1335666765
No 30
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=53.11 E-value=20 Score=35.15 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.6
Q ss_pred CCCeEEEEEEEeecC--CccEEEEEcCCCC
Q psy667 334 DLGHAVLLVGYGKQD--NIPYWLVRNSWGP 361 (392)
Q Consensus 334 ~~~Hav~iVGyg~~~--g~~ywiikNSWG~ 361 (392)
..+||=.|++.-..+ +.+.-.+||.||.
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccC
Confidence 568999999998766 8899999999995
No 31
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=42.89 E-value=59 Score=28.88 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=28.5
Q ss_pred CHHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeec
Q psy667 292 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 347 (392)
Q Consensus 292 ~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~ 347 (392)
+.+.+...|.++||+-++.... ......|+++|.|-..+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P-----------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP-----------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC-----------------CCcceeeEEEEEeecCC
Confidence 4678999999999999886431 11234699999986643
No 32
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=25.76 E-value=1.2e+02 Score=29.76 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCCeEEEEEEEeecCCcc--EEEEEcCCCC
Q psy667 334 DLGHAVLLVGYGKQDNIP--YWLVRNSWGP 361 (392)
Q Consensus 334 ~~~Hav~iVGyg~~~g~~--ywiikNSWG~ 361 (392)
..+||=.|++...-++.+ -..+||-||.
T Consensus 226 v~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 568999999988655545 8999999993
No 33
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=23.58 E-value=2.8e+02 Score=24.99 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCCcccCCceeeCCCCCCCCCCCCeEEEEEEEeecCCccEEEEEcCCCCCCC--CCcEEE
Q psy667 293 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGP--DEGFFK 370 (392)
Q Consensus 293 ~~~ik~~l~~~gPV~v~i~~~~f~~y~~Giy~~~~~~c~~~~~~Hav~iVGyg~~~g~~ywiikNSWG~~WG--~~GY~~ 370 (392)
.+.|+..|.++.||...-.. . ..+||.+|=||.. ..||-+ -|| || .+||++
T Consensus 140 ~~~i~~el~~~rPV~~~g~~------------~--------~~GHawViDGy~~---~~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNS------------K--------SGGHAWVIDGYDS---DGYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEE------------T--------TEEEEEEEEEEES---SSEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEec------------C--------CCCeEEEEcCccC---CCeEEE--eeC--ccCCCCCccC
Confidence 35788999989999854321 1 1289999999964 346654 455 44 579985
Done!