RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy667
(392 letters)
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 221 bits (565), Expect = 1e-69
Identities = 95/360 (26%), Positives = 152/360 (42%), Gaps = 64/360 (17%)
Query: 56 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 106
+ + E ++ F R Y N +E R + F++ + H +K+ + S
Sbjct: 10 GSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL 69
Query: 107 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 162
F+D +PEE+ G ++ + + + + + + P ++DWR +
Sbjct: 70 GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED---LGLNASVRYPASFDWRDQG 126
Query: 163 VTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEF 222
+ P +Q +CGS WAFS G +E Q I G +
Sbjct: 127 MVSPVKNQGSCGSSWAFSSTGA-----------------------IESQMKIANGAGYDS 163
Query: 223 SKS--QLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKV 279
S S QLV+C GC G + + Y Q G++SE YPY+ A+G C YD ++V
Sbjct: 164 SVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQV 220
Query: 280 KLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETC 330
+G +L + ++ GP++V ++D Y TC
Sbjct: 221 AARLSGYVYLSGPDENMLADMVATKGPVAVAFDAD--DPFGSYSGGVYYN-------PTC 271
Query: 331 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
HAVL+VGYG ++ YWLV+NSWG +G+FKI R NN CGI +A T+
Sbjct: 272 ETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 220 bits (563), Expect = 1e-69
Identities = 63/337 (18%), Positives = 115/337 (34%), Gaps = 47/337 (13%)
Query: 63 NILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGTSEFSDRSPEEIL 117
+ ++TF+ + + YA E+ + + F + + + SD S +E
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----AINHLSDLSLDEFK 58
Query: 118 CK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 176
+ + + + + +G P D R+ P Q CGS
Sbjct: 59 NRFLMSAEAFEHLKT----QFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 177 WAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 236
WAFS E Y + ++ ++ +LV+CA Q G
Sbjct: 115 WAFSGVAA-----------------------TESAYLAYRDQSLDLAEQELVDCASQ-HG 150
Query: 237 CDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 296
C G IEY G+ E Y Y C ++ + ++ + +
Sbjct: 151 CHGDTIPRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIYPPNANKI 207
Query: 297 KKILYK-YGPLSVLLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 352
++ L + + ++V++ + Y+G I HAV +VGY + Y
Sbjct: 208 REALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDY 265
Query: 353 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 389
W+VRNSW D G+ + IE+ +
Sbjct: 266 WIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 302
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 219 bits (560), Expect = 6e-69
Identities = 88/344 (25%), Positives = 143/344 (41%), Gaps = 59/344 (17%)
Query: 66 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 113
E + F + + Y++ E R FK H K E+ + +F D S
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 114 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 173
EE F + + + + V P+ + DWR V+ DQ C
Sbjct: 85 EE------FL-AYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAVS-EVKDQGQC 136
Query: 174 GSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQ 233
GS W+FS G +EGQ A++ G+L S+ L++C+
Sbjct: 137 GSSWSFSTTGA-----------------------VEGQLALQRGRLTSLSEQNLIDCSSS 173
Query: 234 C--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHF 290
+GCDG + + + Y H G+ SE YPY+ C +D S+ +G L
Sbjct: 174 YGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQGD---YCRFDSSQSVTTLSGYYDLPS 230
Query: 291 NGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRK---NDETCSPYDLGHAVLLVGYGK 346
++ + + GP++V ++ +D + Y D+TC+ DL H VL+VGYG
Sbjct: 231 GDENSLADAVGQAGPVAVAIDATDELQFY-----SGGLFYDQTCNQSDLNHGVLVVGYGS 285
Query: 347 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
+ YW+++NSWG + G+++ R N CGI A Y +
Sbjct: 286 DNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL 329
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 214 bits (547), Expect = 2e-68
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 29/240 (12%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P WDWR K DQ CGSCWAFS+ G +EGQ+
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGN-----------------------VEGQW 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFK 271
+ G L+ S+ +L++C K C G + GLE+E DY Y+
Sbjct: 39 FLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---S 95
Query: 272 CAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC 330
C + K K+ +D + + +E + L K GP+SV +N+ + Y R C
Sbjct: 96 CQFSAEKAKV-YIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLC 154
Query: 331 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 390
SP+ + HAVLLVGYG++ ++P+W ++NSWG ++G++ + RG+ ACG+ +A A +D
Sbjct: 155 SPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 214 bits (547), Expect = 4e-67
Identities = 91/351 (25%), Positives = 146/351 (41%), Gaps = 58/351 (16%)
Query: 59 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 106
+ E + ++ + +QY N + R +++ H + +
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 107 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 166
D + EE + T ++ + L E +G PD+ D+RKK P
Sbjct: 62 HLGDMTSEE------VV-QKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTP 114
Query: 167 AGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQ 226
+Q CGSCWAFS G LEGQ KTGKL+ S
Sbjct: 115 VKNQGQCGSCWAFSSVGA-----------------------LEGQLKKKTGKLLNLSPQN 151
Query: 227 LVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TG 284
LV+C + GC G + + +Y G++SE YPY C Y+ + G
Sbjct: 152 LVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRG 208
Query: 285 KDFLHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRK---NDETCSPYDLGHAV 339
+ + +K+ + + GP+SV +++ L Y K DE+C+ +L HAV
Sbjct: 209 YREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY-----SKGVYYDESCNSDNLNHAV 263
Query: 340 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
L VGYG Q +W+++NSWG ++G+ + R NNACGI +A + +
Sbjct: 264 LAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 213 bits (545), Expect = 7e-67
Identities = 92/348 (26%), Positives = 144/348 (41%), Gaps = 68/348 (19%)
Query: 66 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 113
+ + + ++Y ++ + R +++ H +H+ + +F+D +
Sbjct: 3 DLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 114 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 173
EE FK ++ E A + E + VPD DWR+ DQ C
Sbjct: 62 EE------FK-AKYLTEMSRASDILSHGVPYEAN-NRAVPDKIDWRESGYVTEVKDQGNC 113
Query: 174 GSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAKQ 233
GS WAFS G +EGQY + FS+ QLV+C++
Sbjct: 114 GSGWAFSTTGT-----------------------MEGQYMKNERTSISFSEQQLVDCSRP 150
Query: 234 C--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHF 290
+GC G E + +Y Q GLE+E YPY G +C Y+K TG +H
Sbjct: 151 WGNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTVHS 207
Query: 291 NGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYDLGHAVLLV 342
+K ++ GP +V ++ + D Y +TCSP + HAVL V
Sbjct: 208 GSEVELKNLVGAEGPAAVAVDVE--SDFMMYRSGIYQS-------QTCSPLRVNHAVLAV 258
Query: 343 GYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
GYG Q YW+V+NSWG + G+ ++ R N CGI +A +
Sbjct: 259 GYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 205 bits (525), Expect = 4e-65
Identities = 70/244 (28%), Positives = 100/244 (40%), Gaps = 38/244 (15%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P A DWR + DQ CGSCWAFS G +E Q+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGN-----------------------VECQW 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEK 269
+ L S+ LV C K SGC G + E+ Q + +E YPY + G
Sbjct: 39 FLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGIS 98
Query: 270 FKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNG---TPIRK 325
C V TG L + + L GP++V +++ Y G T
Sbjct: 99 PPCTTSGHTVGATITGHVELPQD-EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS--- 154
Query: 326 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAG 385
C L H VLLVGY +PYW+++NSW +EG+ +I +G+N C +++ A
Sbjct: 155 ----CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEAS 210
Query: 386 YATI 389
A +
Sbjct: 211 SAVV 214
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 205 bits (523), Expect = 2e-63
Identities = 94/353 (26%), Positives = 145/353 (41%), Gaps = 68/353 (19%)
Query: 61 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSEFSDRS 112
E +++ F ++++ + Y N +E RFE FK D KK+ Y G +EF+D S
Sbjct: 15 TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLS 74
Query: 113 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAA 172
+E F + I A E+ E +P+ DWRKK P Q +
Sbjct: 75 NDE------FN-EKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGS 127
Query: 173 CGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQLVECAK 232
CGSCWAFS +EG I+TGKLVE S+ +LV+C +
Sbjct: 128 CGSCWAFSAVAT-----------------------VEGINKIRTGKLVELSEQELVDCER 164
Query: 233 QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHF 290
+ GC G + ++EY + G+ YPYK G C + + +
Sbjct: 165 RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQP 221
Query: 291 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 341
N + + K P+SV++ S + G C + AV
Sbjct: 222 NNEGNLLNAIAK-QPVSVVVESK--GRPFQLYKGGIFEG--------PCGT-KVDGAVTA 269
Query: 342 VGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 390
VGYGK Y L++NSWG ++G+ +I+R CG+ + + Y T +
Sbjct: 270 VGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 203 bits (519), Expect = 5e-63
Identities = 98/365 (26%), Positives = 149/365 (40%), Gaps = 80/365 (21%)
Query: 56 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 106
SLTFD ++ + + R Y +EE R +++ + H +++ S
Sbjct: 1 SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58
Query: 107 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 162
F D + EE GF+ + ++ + E P + DWR+K
Sbjct: 59 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APRSVDWREKG 107
Query: 163 VTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEF 222
P +Q CGSCWAFS G LEGQ KTG+L+
Sbjct: 108 YVTPVKNQGQCGSCWAFSATGA-----------------------LEGQMFRKTGRLISL 144
Query: 223 SKSQLVECAKQ--CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKV 279
S+ LV+C+ GC+G + + +Y GL+SE+ YPY+ C Y+
Sbjct: 145 SEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYS 201
Query: 280 KLFTGKDFLHFNGSET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDET 329
F+ E + K + GP+SV +++ H+ Y +
Sbjct: 202 VA-NDAGFVDIPKQEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPD 251
Query: 330 CSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 384
CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ + N CGI A
Sbjct: 252 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 311
Query: 385 GYATI 389
Y T+
Sbjct: 312 SYPTV 316
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 203 bits (518), Expect = 9e-63
Identities = 86/352 (24%), Positives = 139/352 (39%), Gaps = 60/352 (17%)
Query: 59 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 106
+ + + + G+QY E R +++ H +H S
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 107 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 166
D + EE + + + + + +PD+ DWR+K
Sbjct: 63 HLGDMTSEE------VM---SLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTE 113
Query: 167 AGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVEFSKSQ 226
Q +CG+ WAFS G LE Q +KTGKLV S
Sbjct: 114 VKYQGSCGAAWAFSAVGA-----------------------LEAQLKLKTGKLVSLSAQN 150
Query: 227 LVECAKQCSGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF 282
LV+C+ + G GC F + +Y G++S+ YPYK + KC YD
Sbjct: 151 LVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAAT 207
Query: 283 -TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLI--HDY-NGTPIRKNDETCSPYDLGHA 338
+ L + + +K+ + GP+SV +++ Y +G + +C+ ++ H
Sbjct: 208 CSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHG 263
Query: 339 VLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 389
VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI Y I
Sbjct: 264 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 197 bits (503), Expect = 8e-62
Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 33/245 (13%)
Query: 149 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGML 208
+G P D R+ P Q CGS WAFS
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAA-----------------------T 43
Query: 209 EGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE 268
E Y + ++ ++ +LV+CA Q GC G IEY G+ E Y Y
Sbjct: 44 ESAYLAYRQQSLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQ- 101
Query: 269 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYK-YGPLSVLLNSDLIHD---YNGTPIR 324
C ++ + ++ + +++ L + + ++V++ + Y+G I
Sbjct: 102 --SCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI- 158
Query: 325 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 384
HAV +VGY + YW+VRNSW D G+ + IE+
Sbjct: 159 -IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYP 217
Query: 385 GYATI 389
+
Sbjct: 218 YVVIL 222
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 200 bits (510), Expect = 2e-60
Identities = 82/340 (24%), Positives = 129/340 (37%), Gaps = 54/340 (15%)
Query: 73 VKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGT----SEFSDRSPEEILCKTGFK 123
V + + + K +K ++ T E+ + +++ ++G
Sbjct: 125 VYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG-- 182
Query: 124 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK---NVTGPAGDQAACGSCWAFS 180
+ R + + +K +P +WDWR N P +QA+CGSC++F+
Sbjct: 183 ----GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFA 238
Query: 181 IAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCD 238
G MLE + I T S ++V C++ GC+
Sbjct: 239 SMG-----------------------MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCE 275
Query: 239 GCFFEPSIEYTHQA-GLESEKDYPYKNANGE-KFKCAYDKSKVKLFTGKDFLHFNGSET- 295
G F Q GL E +PY + K K + + + +E
Sbjct: 276 GGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEAL 335
Query: 296 MKKILYKYGPLSVLLN--SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQD 348
MK L +GP++V D +H Y D HAVLLVGYG
Sbjct: 336 MKLELVHHGPMAVAFEVYDDFLH-YKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSAS 394
Query: 349 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 388
+ YW+V+NSWG + G+F+I RG + C IE IA AT
Sbjct: 395 GMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 188 bits (481), Expect = 2e-58
Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 47/249 (18%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
PD+ D+RKK P +Q CGSCWAFS G LEGQ
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGA-----------------------LEGQL 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFK 271
KTGKL+ S LV+C + GC G + + +Y G++SE YPY
Sbjct: 39 KKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---S 95
Query: 272 CAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGT 321
C Y+ + G + + +K+ + + GP+SV +++ Y
Sbjct: 96 CMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDAS--LTSFQFYSKGVY--- 150
Query: 322 PIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 380
DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ + R NNACGI
Sbjct: 151 ----YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGI 206
Query: 381 EQIAGYATI 389
+A + +
Sbjct: 207 ANLASFPKM 215
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 189 bits (482), Expect = 2e-58
Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
P++WDW KK V Q CGS WAFS G +E
Sbjct: 2 APESWDWSKKGVITKVKFQGQCGSGWAFSATGA-----------------------IEAA 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKF 270
+AI TG LV S+ +L++C + GC + S E+ + G+ SE DYPYK +G
Sbjct: 39 HAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDG--- 95
Query: 271 KCAYDKSKVKL----FTGKDFLHFN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPI 323
KC ++ + K+ + + + + +E+ + P+SV +++ H Y+G
Sbjct: 96 KCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY 155
Query: 324 RKNDETCS-PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----C 378
+ CS PY + H VL+VGYG +D + YW+ +NSWG +G+ +I+R C
Sbjct: 156 --DGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVC 213
Query: 379 GIEQIAGYATID 390
G+ A Y I+
Sbjct: 214 GMNYFASYPIIE 225
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 185 bits (473), Expect = 3e-57
Identities = 82/250 (32%), Positives = 112/250 (44%), Gaps = 52/250 (20%)
Query: 153 PDAWDWRKK--NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEG 210
P + DWRKK V+ P +Q +CGSCW FS G LE
Sbjct: 2 PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGA-----------------------LES 37
Query: 211 QYAIKTGKLVEFSKSQLVECAKQC--SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANG 267
AI TGK++ ++ QLV+CA+ GC G + EY G+ E YPYK +
Sbjct: 38 AVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD 97
Query: 268 EKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD--------Y 318
C + K F + N E M + + Y P+S +D Y
Sbjct: 98 ---HCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT--NDFLMYRKGIY 152
Query: 319 NGTPIRKNDETC--SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN 376
+ +C +P + HAVL VGYG+++ IPYW+V+NSWGP G+F IERG N
Sbjct: 153 S-------STSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKN 205
Query: 377 ACGIEQIAGY 386
CG+ A Y
Sbjct: 206 MCGLAACASY 215
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 188 bits (479), Expect = 6e-57
Identities = 68/317 (21%), Positives = 102/317 (32%), Gaps = 71/317 (22%)
Query: 106 SEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWD----WRKK 161
+ + E G ++ E E P+P ++D W
Sbjct: 32 GVMQNITLREAKRLNGVIKKNNN------ASILPKRRFTEEEARAPLPSSFDSAEAWPNC 85
Query: 162 NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKTG-KLV 220
DQ+ACGSCWA + A + ++ G + V
Sbjct: 86 PTIPQIADQSACGSCWAVAAAS-----------------------AMSDRFCTMGGVQDV 122
Query: 221 EFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE----------- 268
S L+ C C GC+G + + Y GL S+ PY +
Sbjct: 123 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPP 182
Query: 269 -----------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLI 315
+ C V + G + + L+ GP V + D I
Sbjct: 183 CSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFI 242
Query: 316 HDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFKI 371
Y + Y GHAV LVG+G + +PYW + NSW G +G+F I
Sbjct: 243 A-Y------NSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLI 294
Query: 372 ERGNNACGIEQIAGYAT 388
RG++ CGIE
Sbjct: 295 RRGSSECGIEDGGSAGI 311
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 181 bits (463), Expect = 7e-56
Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 39/247 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWRKK P Q +CGSCWAFS +EG
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVAT-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TGKLVE S+ +LV+C ++ GC G + ++EY + G+ YPYK G
Sbjct: 38 NKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---T 94
Query: 272 CAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKND 327
C + + + N + + K P+SV++ S Y G +
Sbjct: 95 CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIF---E 150
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 383
C + HAV VGYGK Y L++NSWG ++G+ +I+R CG+ +
Sbjct: 151 GPCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKS 209
Query: 384 AGYATID 390
+ Y T +
Sbjct: 210 SYYPTKN 216
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 177 bits (452), Expect = 3e-54
Identities = 75/247 (30%), Positives = 112/247 (45%), Gaps = 39/247 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+K Q +CG+CWAFS G LE Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGA-----------------------LEAQ 38
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANG 267
+KTGKLV S LV+C+ + G GC F + +Y G++S+ YPYK +
Sbjct: 39 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 98
Query: 268 EKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN---SDLIHDYNGTPI 323
KC YD + L + + +K+ + GP+SV ++ +G
Sbjct: 99 ---KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-- 153
Query: 324 RKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 382
+ +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ ++ R N CGI
Sbjct: 154 -YYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
Query: 383 IAGYATI 389
Y I
Sbjct: 212 FPSYPEI 218
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 177 bits (451), Expect = 5e-54
Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P DWR K +Q CGSCWAFS +E
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAA-----------------------VESI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKF 270
I+TG+L+ S+ +LV+C GC+G + + +Y G++++++YPY G
Sbjct: 38 NKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG--- 94
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDE 328
C + +V G + N ++ + P+SV + + Y+
Sbjct: 95 SCKPYRLRVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIF---TG 150
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIA 384
C H V++VGYG Q YW+VRNSWG ++G+ +ER + CGI Q+
Sbjct: 151 PCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLP 209
Query: 385 GYAT 388
Y T
Sbjct: 210 SYPT 213
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 178 bits (453), Expect = 5e-54
Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
A+DWR P DQA CGSCWAFS G +E Q
Sbjct: 20 DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGS-----------------------VESQ 56
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKF 270
YAI+ L FS+ +LV+C+ + +GC G + + + GL S+ DYPY + E
Sbjct: 57 YAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE-- 114
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKN 326
C + + T K ++ + K+ L GP+S+ + SD Y G
Sbjct: 115 TCNLKRCNERY-TIKSYVSIP-DDKFKEALRYLGPISISIAASDDFAFYRGGFYDG---- 168
Query: 327 DETCSPYDLGHAVLLVGYG----------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNN 376
C HAV+LVGYG + + Y++++NSWG + G+ +E N
Sbjct: 169 --ECGA-APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
Query: 377 A----CGIEQIAGYATID 390
C I A ++
Sbjct: 226 GYKKTCSIGTEAYVPLLE 243
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 176 bits (450), Expect = 6e-54
Identities = 79/255 (30%), Positives = 112/255 (43%), Gaps = 54/255 (21%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P + DWR+K P +Q CGSCWAFS G LEGQ
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGA-----------------------LEGQM 38
Query: 213 AIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEK 269
KTG+L+ S+ LV+C+ GC+G + + +Y GL+SE+ YPY+
Sbjct: 39 FRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE-- 96
Query: 270 FKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLNSDLIHD---------YN 319
C Y+ F+ E + K + GP+SV +++ H+ Y
Sbjct: 97 -SCKYNPKYSVA-NDTGFVDIPKQEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY- 151
Query: 320 GTPIRKNDETCSPYDLGHAVLLVGYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERG- 374
+ CS D+ H VL+VGYG + DN YWLV+NSWG G+ K+ +
Sbjct: 152 ------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 375 NNACGIEQIAGYATI 389
N CGI A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 176 bits (448), Expect = 1e-53
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P + DWR+K P +Q CGSCW FS +EG
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAA-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I TG+L+ S+ +L++C ++ GC G F +++Y +G+ + YPY+ +
Sbjct: 38 NKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANSGIHLRQYYPYEGVQR---Q 94
Query: 272 CAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKND 327
C ++K + N + + + + P+S+++ + +Y G
Sbjct: 95 CRASQAKGPKVKTDGVGRVPRNNEQALIQRIAI-QPVSIVVEAKGRAFQNYRGGIF---A 150
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 383
C + HAV VGYG Y L++NSWG + G+ +I+RG+ CG+
Sbjct: 151 GPCGT-SIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSD 205
Query: 384 AGYATID 390
+ + T +
Sbjct: 206 SVFPTKN 212
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 176 bits (449), Expect = 2e-53
Identities = 70/263 (26%), Positives = 108/263 (41%), Gaps = 55/263 (20%)
Query: 148 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGM 207
++ A+DWR + P DQ CGSCWAFS G
Sbjct: 14 EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGS----------------------- 50
Query: 208 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNAN 266
+E QYAI+ KL+ S+ +LV+C+ + GC+G + E + G+ + DYPY +
Sbjct: 51 VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDA 110
Query: 267 GEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN-SDLIHDYNG---T 321
C D+ K + + + +K+ L GP+S+ + SD Y
Sbjct: 111 PN--LCNIDRCTEK---YGIKNYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFD 165
Query: 322 PIRKNDETCSPYDLGHAVLLVGYG----------KQDNIPYWLVRNSWGPIGPDEGFFKI 371
C L HAV+LVG+G K + Y++++NSWG + GF I
Sbjct: 166 G------ECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218
Query: 372 ERGNNA----CGIEQIAGYATID 390
E + CG+ A I+
Sbjct: 219 ETDESGLMRKCGLGTDAFIPLIE 241
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 174 bits (444), Expect = 5e-53
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 39/245 (15%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD+ DWR+ P +Q CGSCWAFS +EG
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAA-----------------------VEGI 39
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKF 270
I TG L+ S+ QLV+C GC G + P+ ++ G+ SE+ YPY+ +G
Sbjct: 40 NQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG--- 96
Query: 271 KCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKND 327
C + + + + + ++++K + P+SV +++ Y
Sbjct: 97 ICNSTVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIF---T 152
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 383
+C+ HA+ +VGYG +++ +W+V+NSWG + G+ + ER CGI +
Sbjct: 153 GSCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRF 211
Query: 384 AGYAT 388
A Y
Sbjct: 212 ASYPV 216
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 175 bits (447), Expect = 6e-53
Identities = 57/279 (20%), Positives = 90/279 (32%), Gaps = 67/279 (24%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
D DQ C + W F+ LE
Sbjct: 10 CNRLKDENNCISNLQVEDQGNCDTSWIFASKYH-----------------------LETI 46
Query: 212 YAIKTGKLVEFSKSQLVECAKQC--SGCDGCF----FEPSIEYTHQAGLESEKDYPYK-- 263
+K + + S + C K CD F IE L +E +YPY
Sbjct: 47 RCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIEDYG--FLPAESNYPYNYV 104
Query: 264 -------------NANGEKFKCAYDKSKVKLFTGKDFLHFNGS----------ETMKKIL 300
+ K ++K++ GK + + + +K +
Sbjct: 105 KVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEV 164
Query: 301 YKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI-----PYW 353
G + + + + ++++G +K C HAV +VGYG N YW
Sbjct: 165 MNKGSVIAYIKAENVMGYEFSG---KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYW 221
Query: 354 LVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 391
+VRNSWGP DEG+FK++ G C I +V
Sbjct: 222 IVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 174 bits (443), Expect = 6e-53
Identities = 70/244 (28%), Positives = 101/244 (41%), Gaps = 39/244 (15%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P + DWR K P +Q ACGSCWAFS +EG
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSCWAFSTIAT-----------------------VEGIN 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC 272
I TG L+E S+ +LV+C K GC G + S++Y G+ + K YPY+ KC
Sbjct: 39 KIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQY---KC 95
Query: 273 AYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDE 328
+ + N + L PLSVL+ + Y D
Sbjct: 96 RATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF---DG 151
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIA 384
C L HAV VGYG D Y +++NSWGP ++G+ +++R + CG+ + +
Sbjct: 152 PCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSS 210
Query: 385 GYAT 388
Y
Sbjct: 211 YYPF 214
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 173 bits (442), Expect = 8e-53
Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 43/247 (17%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWR+K P +Q +CGSCWAFS +EG
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVT-----------------------IEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
I+TG L ++S+ +L++C ++ GC+G + +++ Q G+ YPY+
Sbjct: 38 IKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---Y 94
Query: 272 CAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKND 327
C + + + + P+SV+L + Y G
Sbjct: 95 CRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIF---V 150
Query: 328 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 383
C + HAV VGYG Y L++NSWG + G+ +I+RG CG+
Sbjct: 151 GPCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205
Query: 384 AGYATID 390
+ Y +
Sbjct: 206 SFYPVKN 212
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 172 bits (438), Expect = 3e-52
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 43/242 (17%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P++ DWR+K P +Q CGSCWAFS +EG
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVAT-----------------------IEGIN 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC 272
I TG+L+ S+ +L++C ++ GCDG + S++Y G+ +E++YPY+ G +C
Sbjct: 39 KIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RC 95
Query: 273 AYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDE 328
K + + N ++ + + P+SV+ +S Y G +
Sbjct: 96 RAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIY---EG 151
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIA 384
C + HAV VGYGK Y L++NSWGP ++G+ +I+R CG+ +
Sbjct: 152 PCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSS 206
Query: 385 GY 386
+
Sbjct: 207 FF 208
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 170 bits (434), Expect = 2e-51
Identities = 75/256 (29%), Positives = 109/256 (42%), Gaps = 58/256 (22%)
Query: 152 VPDAWDWRKKN-VTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEG 210
VP + DWRKK VT DQ CGSCWAFS +EG
Sbjct: 2 VPASVDWRKKGAVT-SVKDQGQCGSCWAFSTIVA-----------------------VEG 37
Query: 211 QYAIKTGKLVEFSKSQLVECAKQCS-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE 268
IKT KLV S+ +LV+C + GC+G + + E+ + G+ +E +YPY+ +G
Sbjct: 38 INQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG- 96
Query: 269 KFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHD--------- 317
C K + + N + K + P+SV +++
Sbjct: 97 --TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAG--GSDFQFYSEGV 151
Query: 318 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG-- 374
+ G +C +L H V +VGYG D YW V+NSWGP ++G+ ++ERG
Sbjct: 152 FTG--------SCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGIS 202
Query: 375 --NNACGIEQIAGYAT 388
CGI A Y
Sbjct: 203 DKEGLCGIAMEASYPI 218
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 168 bits (428), Expect = 1e-50
Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 55/254 (21%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+PD DWR DQ CGS WAFS +EG
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSAWAFSTIAA-----------------------VEGI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE 268
I TG L+ S+ +LV+C + GCDG F ++ + G+ +E +YPY G
Sbjct: 38 NKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG- 96
Query: 269 KFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSDLIHD--------- 317
+C D + K + + + +N ++ + P+SV L +
Sbjct: 97 --QCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAY-QPVSVALEAA--GYNFQHYSSGI 151
Query: 318 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG--- 374
+ G C + HAV +VGYG + I YW+V+NSWG +EG+ +I+R
Sbjct: 152 FTG--------PCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGG 202
Query: 375 NNACGIEQIAGYAT 388
CGI + A Y
Sbjct: 203 VGQCGIAKKASYPV 216
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 170 bits (432), Expect = 2e-50
Identities = 61/278 (21%), Positives = 93/278 (33%), Gaps = 66/278 (23%)
Query: 145 EVEKDGPVPDAWDWRKK---NVTGPAGDQAA---CGSCWAFSIAGKFSNYLLQYLNHIDQ 198
E +P +WDWR N +Q CGSCWA +
Sbjct: 29 EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTS--------------- 73
Query: 199 FCLLIFPGMLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLE 255
+ + IK S +++C C+G +Y HQ G+
Sbjct: 74 --------AMADRINIKRKGAWPSTLLSVQNVIDCGN-AGSCEGGNDLSVWDYAHQHGIP 124
Query: 256 SEKDYPYKNANGE-----------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYG 304
E Y+ + E +FK + L+ D+ +G E M +Y G
Sbjct: 125 DETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANG 184
Query: 305 PLSVLLN--SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSW 359
P+S + L + Y G E + H V + G+G D YW+VRNSW
Sbjct: 185 PISCGIMATERLAN-YTGGIYA------EYQDTTYINHVVSVAGWGISDGTEYWIVRNSW 237
Query: 360 GPI-GPDEGFFKIERGNNACG--------IEQIAGYAT 388
G G + G+ +I G IE+ +
Sbjct: 238 GEPWG-ERGWLRIVTSTYKDGKGARYNLAIEEHCTFGD 274
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 166 bits (423), Expect = 4e-50
Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 41/242 (16%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P+ DWRKK P +Q +CGSCWAFS +E
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVST-----------------------VESI 37
Query: 212 YAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKF 270
I+TG L+ S+ +LV+C K+ GC G F + +Y G++++ +YPYK G
Sbjct: 38 NQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG--- 94
Query: 271 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDE 328
C V + G + + F +E K P +V +++ Y+
Sbjct: 95 PCQAASKVVSI-DGYNGVPFC-NEXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----S 148
Query: 329 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGY 386
L H V +VGY YW+VRNSWG ++G+ ++ R G CGI ++ Y
Sbjct: 149 GPCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204
Query: 387 AT 388
T
Sbjct: 205 PT 206
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 166 bits (422), Expect = 4e-49
Identities = 68/288 (23%), Positives = 103/288 (35%), Gaps = 75/288 (26%)
Query: 148 KDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLI 203
+D +P ++D R++ DQ +CGS WAF
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVE-------------------- 42
Query: 204 FPGMLEGQYAIKTGKL--VEFSKSQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKD 259
+ + I T VE S L+ C C GC+G + + + + GL S
Sbjct: 43 ---AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGL 99
Query: 260 Y-------PYK------NANGEKFKCAYDK-----------------SKVKLFTGKDFLH 289
Y PY + NG + C + + K + +
Sbjct: 100 YESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSV 159
Query: 290 FNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGY 344
N + + +YK GP+ + SD + Y K+ GHA+ ++G+
Sbjct: 160 SNSEKDIMAEIYKNGPVEGAFSVYSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGW 212
Query: 345 GKQDNIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAGYATIDV 391
G ++ PYWLV NSW G D GFFKI RG + CGIE
Sbjct: 213 GVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVVAGIPRT 259
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 167 bits (425), Expect = 4e-49
Identities = 75/356 (21%), Positives = 118/356 (33%), Gaps = 93/356 (26%)
Query: 86 KERFEYFKQDGHKKHERYGTS-----EFSDRSPEEILCKTGFKWSERTYERIVADREKVE 140
+ F + + T+ F + + G + V
Sbjct: 4 RPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMF----- 58
Query: 141 KMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHI 196
+D +P ++D R++ DQ +CGSCWAF
Sbjct: 59 ------TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE------------- 99
Query: 197 DQFCLLIFPGMLEGQYAIKTGKL--VEFSKSQLVECA-KQCS-GCDGCFFEPSIEYTHQA 252
+ + I T VE S L+ C C GC+G + + + +
Sbjct: 100 ----------AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK 149
Query: 253 GLESEKDYPYK-------------NANGEKFKCAYDK-----------------SKVKLF 282
GL S Y + NG + C + + K +
Sbjct: 150 GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHY 209
Query: 283 TGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCSPYDLGH 337
+ N + + +YK GP+ + SD + Y K+ GH
Sbjct: 210 GYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLL-Y------KSGVYQHVTGEMMGGH 262
Query: 338 AVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQ--IAGYATID 390
A+ ++G+G ++ PYWLV NSW G D GFFKI RG + CGIE +AG D
Sbjct: 263 AIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 165 bits (419), Expect = 6e-49
Identities = 62/283 (21%), Positives = 104/283 (36%), Gaps = 75/283 (26%)
Query: 152 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGM 207
+P ++D RKK DQ+ CGSCWAF
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVE-----------------------A 39
Query: 208 LEGQYAIKTG--KLVEFSKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK- 263
+ + I++G + VE S L+ C + C GC+G P+ +Y + G+ +
Sbjct: 40 MSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHA 99
Query: 264 ------------NANGEKFKCAYDK------------------SKVKLFTGKDFLHFNGS 293
+ G+ C ++ K + N
Sbjct: 100 GCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDE 159
Query: 294 ETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQD 348
+ ++K + KYGP+ D ++ Y K+ GHA+ ++G+G ++
Sbjct: 160 KAIQKEIMKYGPVEAGFTVYEDFLN-Y------KSGIYKHITGETLGGHAIRIIGWGVEN 212
Query: 349 NIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAGYATID 390
PYWL+ NSW G + G+F+I RG + C IE I+
Sbjct: 213 KAPYWLIANSWNEDWG-ENGYFRIVRGRDECSIESEVTAGRIN 254
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 165 bits (420), Expect = 7e-49
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 61/259 (23%)
Query: 152 VPDAWDWRKKN-VTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEG 210
+P + DWR+K VT DQ CGSCWAFS +EG
Sbjct: 4 LPPSVDWRQKGAVT-GVKDQGKCGSCWAFSTVVS-----------------------VEG 39
Query: 211 QYAIKTGKLVEFSKSQLVECAKQCS-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE 268
AI+TG LV S+ +L++C + GC G + + EY + GL +E YPY+ A G
Sbjct: 40 INAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG- 98
Query: 269 KFKCAYDKSKVKL-----FTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD------ 317
C ++ G + N E + + + P+SV + +
Sbjct: 99 --TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEAS--GKAFMFYS 153
Query: 318 ---YNGTPIRKNDETCSPYDLGHAVLLVGYGK-QDNIPYWLVRNSWGPIGPDEGFFKIER 373
+ G C +L H V +VGYG +D YW V+NSWGP ++G+ ++E+
Sbjct: 154 EGVFTG--------ECGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEK 204
Query: 374 GNNA----CGIEQIAGYAT 388
+ A CGI A Y
Sbjct: 205 DSGASGGLCGIAMEASYPV 223
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 163 bits (414), Expect = 2e-48
Identities = 67/256 (26%), Positives = 102/256 (39%), Gaps = 56/256 (21%)
Query: 152 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQ 211
+P DWR + P DQ CGSCWAFS G LEG
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGA-----------------------LEGA 43
Query: 212 YAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE 268
+ KTGKLV S+ +L++C++ C G + +Y G+ SE YPY +
Sbjct: 44 HCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE- 102
Query: 269 KFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD---------Y 318
+C + + G + MK L K P+S+ + +D +
Sbjct: 103 --ECRAQSCEKVVKILGFKDVPRRSEAAMKAALAK-SPVSIAIEAD--QMPFQFYHEGVF 157
Query: 319 NGTPIRKNDETCSPYDLGHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERG-- 374
+ +C DL H VLLVGYG K+ +W+++NSWG +G+ +
Sbjct: 158 DA--------SCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKG 208
Query: 375 -NNACGIEQIAGYATI 389
CG+ A + +
Sbjct: 209 EEGQCGLLLDASFPVM 224
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 160 bits (406), Expect = 2e-47
Identities = 68/245 (27%), Positives = 97/245 (39%), Gaps = 37/245 (15%)
Query: 153 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQY 212
P + DWRKK DQ ACG CWAF G +EG
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGA-----------------------IEGID 38
Query: 213 AIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFK 271
AI TG+L+ S+ Q+V+C G + + + G+ S+ +YPY +G
Sbjct: 39 AITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDG---T 95
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDE- 328
C +K G + + S + P+SV + + Y G I
Sbjct: 96 CDLNKPIAARIDG--YTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSC 153
Query: 329 TCSPYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 383
+ P + H VL+VGYG N YW+V+NSWG +G+ I R N C I+
Sbjct: 154 SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAW 213
Query: 384 AGYAT 388
Y T
Sbjct: 214 GSYPT 218
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 153 bits (389), Expect = 4e-44
Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 54/260 (20%)
Query: 145 EVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIF 204
E +P D DQ GSC A ++A
Sbjct: 50 EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALA---------------------- 84
Query: 205 PGMLEGQYAIKTGKLVEFSKSQLVECAKQ-----CSGCD-GCFFEPSIEYTHQAGLESEK 258
++ + I + EF S+L + D G I+ H+ G+ EK
Sbjct: 85 -AAIQFER-IHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEK 142
Query: 259 DYPYKNANGEKFKCAYDKS-------------KVKLFTGKDFLHFNGSET-MKKILYKYG 304
++PY + + + + + ++ +K L
Sbjct: 143 EWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGS 202
Query: 305 PLSV--LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI 362
P + + + + + + GHAVL VGY D I ++ +RNSWG
Sbjct: 203 PFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNN 260
Query: 363 -GPDEGFFKIERG-NNACGI 380
G ++G+F + + +
Sbjct: 261 VG-EDGYFWMPYEYISNTQL 279
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 106
Score = 43.2 bits (102), Expect = 9e-06
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 56 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSE 107
+ + + F +F + YA +EE + R+ FK H ++ Y +
Sbjct: 13 IWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNH 72
Query: 108 FSDRSPEEILCK-TGFKWSER 127
F D S +E K GFK S
Sbjct: 73 FGDLSRDEFRRKYLGFKKSRN 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 8e-05
Identities = 54/308 (17%), Positives = 94/308 (30%), Gaps = 99/308 (32%)
Query: 43 QVVARVDTLAIEGSLTFD-----NENILETFKAFIVKRGRQYANDEEIKERFEYFK---- 93
V R D + + F N + F ++G++ I+E +
Sbjct: 1644 DVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKR------IRENYSAMIFETI 1696
Query: 94 QDGHKKHER------YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEV- 146
DG K E+ ++ ++ RS + +L T F T + +EK E
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-----TQPALTL----MEKAAFEDL 1747
Query: 147 EKDGPVPDAWDWRKKNVTGPAGDQAACG-S--------CWA--FSIA---------GKFS 186
+ G +P D G S A SI G
Sbjct: 1748 KSKGLIPA--------------DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM-- 1791
Query: 187 NYLLQYLNHIDQFCLLIFPGMLEGQYAIKTGKLVE-FSKSQLVECAKQCSGCDGCFFEPS 245
+Q D+ + GM+ AI G++ FS+ L ++ G E
Sbjct: 1792 --TMQVAVPRDELGRSNY-GMI----AINPGRVAASFSQEALQYVVERVGKRTGWLVEI- 1843
Query: 246 IEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGP 305
+Y N +++ A D + T + L+F ++KI
Sbjct: 1844 ------V------NY---NVENQQYVAAGDLRALDTVT--NVLNFIK---LQKI--DIIE 1881
Query: 306 LSVLLNSD 313
L L+ +
Sbjct: 1882 LQKSLSLE 1889
Score = 34.6 bits (79), Expect = 0.056
Identities = 67/398 (16%), Positives = 107/398 (26%), Gaps = 158/398 (39%)
Query: 15 IMLIQAVFLLCGVASCLCL---P--------SLTDRITDQVVARVDTLAIEGSLTFDN-- 61
I +IQ L V + L P T V A +AI + ++++
Sbjct: 241 IGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA----VAIAETDSWESFF 293
Query: 62 ENILETFKA--FIVKRGRQYANDEEIKERF-EYFKQDGHKKHERYGTSEFSDRSPEEILC 118
++ + FI R + + + E ++ G SP +L
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE------GVP-----SP--MLS 340
Query: 119 KTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWA 178
+ +E+V+ + K N PAG Q
Sbjct: 341 ISN------------LTQEQVQDYV---------------NKTNSHLPAGKQV------- 366
Query: 179 FSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEG------QYAIKTGKL---VEFSKSQLVE 229
I+ L +N + P L G + +G + FS+ +L
Sbjct: 367 -EIS------L---VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK- 415
Query: 230 CAKQCSGCDGCF---FEP--SIEYTHQAGLESEKDYPYKNA--NGEKFKCA-YDKSKVKL 281
F P S A KD N N + + YD
Sbjct: 416 -------FSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-----T 462
Query: 282 FTGKDFLHFNGS-----------------ETMKK----ILYKYGPLSVLLNSDLIHD-YN 319
F G D +GS T + IL +GP L H +
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHRNKD 521
Query: 320 GTPIR----------KNDETCSPYDLGHAVLLVGYGKQ 347
GT +R +D+ G+ KQ
Sbjct: 522 GTGVRVIVAGTLDINPDDD-------------YGF-KQ 545
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 41.8 bits (97), Expect = 3e-04
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 35/126 (27%)
Query: 157 DWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYAIKT 216
K+N +Q G+CW +S + LE +
Sbjct: 15 TTVKENPITSVKNQNRAGTCWCYS-----------SYS------------FLESELLRMG 51
Query: 217 GKLVEFSKSQLVECAK------------QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKN 264
+ S+ V S G F ++ GL E++
Sbjct: 52 KGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGM 111
Query: 265 ANGEKF 270
+
Sbjct: 112 MYADTL 117
Score = 39.4 bits (91), Expect = 0.001
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 337 HAVLLVGYGKQDN-IPYWLVRNSWGPIGPDEGFFKI 371
H + + G K Y++V+NSWG G +
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic
disorder P like protein, hydrolase; NMR {Drosophila
melanogaster}
Length = 80
Score = 35.4 bits (82), Expect = 0.003
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 56 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHE------RY 103
SL D E + + K + Y +E+ R + + + H +K E +
Sbjct: 3 SLVSDEE-----WVEYKSKFDKNYEAEED-LMRRRIYAESKARIEEHNRKFEKGEVTWKM 56
Query: 104 GTSEFSDRSPEEILCKTGFK 123
G + +D +PEE ++G K
Sbjct: 57 GINHLADLTPEEFAQRSGKK 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.004
Identities = 60/375 (16%), Positives = 101/375 (26%), Gaps = 117/375 (31%)
Query: 8 LVL----EKKAIMLIQAVFLLCGVASCLCLPSLTDR---ITDQVVA--RVDTLAIEGSLT 58
LVL KA F L SC L LT R +TD + A S+T
Sbjct: 248 LVLLNVQNAKAW----NAFNL----SCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 59 FDNENILETFKAFIVKRGRQYAND-----------------EEIKE---RFEYFKQDGHK 98
+ + ++ R D E I++ ++ +K
Sbjct: 298 LTPDEVKSLLLKYLDCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 99 KHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDA--- 155
K S + P E + ++R+ + +P
Sbjct: 354 KLTTIIESSLNVLEPAEY---------RKMFDRLS--------VFPP---SAHIPTILLS 393
Query: 156 --WDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCLLIFPGMLEGQYA 213
W K+ ++ +S+ K + I L LE +YA
Sbjct: 394 LIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKESTISIPSI----YLELKVKLENEYA 444
Query: 214 IKTGKLVEFSKSQLVECAKQCS--GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFK 271
+ +V+ + D F+ I + H +E + E+
Sbjct: 445 LHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGH-HLKNIE----------HPERM- 490
Query: 272 CAYDKSKVKLFTGKDFLHFNGSETMKKILYK----YGPLSVLLNSDLIHD---YNGTPIR 324
LF FL F E +KI + S+L + + Y I
Sbjct: 491 --------TLFR-MVFLDFRFLE--QKIRHDSTAWNASGSIL---NTLQQLKFYKPY-IC 535
Query: 325 KNDETCSPY--DLGH 337
ND +
Sbjct: 536 DNDPKYERLVNAILD 550
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR
{Streptomyces lividans} SCOP: a.181.1.1
Length = 143
Score = 35.3 bits (81), Expect = 0.009
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 86 KERFEYFKQDGHKKH-----ERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVE 140
+E+FE F ++ ER+G ++ +S E+ +++ ++RI + +++
Sbjct: 7 EEKFEVFGDFDPDQYEEEVRERWGNTDAYRQSKEKTA-----SYTKEDWQRIQDEADELT 61
Query: 141 KMLMEVEKDGPVPDA 155
+ + + G D+
Sbjct: 62 RRFVALMDAGEPADS 76
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 34.3 bits (78), Expect = 0.063
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 10/132 (7%)
Query: 139 VEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQ 198
+ + ++ + P +Q + G W FS ++ LN I++
Sbjct: 35 LLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLN-IEE 93
Query: 199 FCL----LIFPGMLEG-----QYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYT 249
F L F +E + T + E +LV+ DG ++ +
Sbjct: 94 FEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIV 153
Query: 250 HQAGLESEKDYP 261
+ G+ +K +P
Sbjct: 154 EKYGVIPKKCFP 165
Score = 32.4 bits (73), Expect = 0.27
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 337 HAVLLVGYGKQDNIP----YWLVRNSWGPIGPDEGFF 369
HA+ ++D+ W V NSWG +G+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 34.3 bits (78), Expect = 0.072
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 337 HAVLLVGYGKQDN---IPYWLVRNSWGPIGPDEGFF 369
A+L+ G + + V NSWG +G +
Sbjct: 373 AAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
Score = 28.6 bits (63), Expect = 4.0
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 164 TGPAGDQAACGSCWAFSIAGKFSNYLLQYLNHIDQFCL----LIFPGMLEG-----QYAI 214
+ P +Q + G CW F+ + +L LN + +F L L F LE +
Sbjct: 65 STPVTNQKSSGRCWLFAATNQLRLNVLSELN-LKEFELSQAYLFFYDKLEKANYFLDQIV 123
Query: 215 KTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYP 261
+ + S+LV+ DG + + + GL + Y
Sbjct: 124 SSAD--QDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYG 168
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.079
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 113 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK 161
PE I KW E +R+ + + K++ + ++ D +W ++
Sbjct: 84 PESIR-----KWREEQRKRL-QELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 30.5 bits (68), Expect = 0.72
Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 45 VARVDTLAIEGSLTFDNENIL---ETFKAFIVKRGRQ-YANDEEIKERFEYFKQDGHKKH 100
+A+ D L E E+I E + + + ++E +E+ + ++ +++
Sbjct: 74 IAQADRLTQEP------ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 101 -ERYGTSEFSDRSPEE 115
E+ ++ ++R ++
Sbjct: 128 SEQVEKNKINNRIADK 143
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 29.9 bits (68), Expect = 0.42
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 35 SLTDRITDQ-VVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 93
+ D + + +D + EG +F+ K F G + + ++K+ F+
Sbjct: 2 AAKDLLKADDIKKALDAVKAEG--SFN-------HKKFFALVGLKAMSANDVKKVFKAID 52
Query: 94 QDG 96
D
Sbjct: 53 ADA 55
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 29.8 bits (68), Expect = 0.44
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 68 FKAFIVKRGRQYANDEEIKERFEYFKQDG 96
+K F G + D ++KE FE +D
Sbjct: 26 YKRFFHLVGLKGKTDAQVKEVFEILDKDQ 54
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga
maritima}
Length = 587
Score = 31.4 bits (72), Expect = 0.56
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 1 MTSSIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAI 53
+ ++ R + ++ +F++ V L P+L RI D+ +AR D +
Sbjct: 10 GSKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLV 62
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.6 bits (67), Expect = 0.58
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 35 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 93
SLTD ++ + A + + +F K F G + ++KE F
Sbjct: 1 SLTDILSPSDIAAALR--DCQAPDSFS-------PKKFFQISGMSKKSSSQLKEIFRILD 51
Query: 94 QDG 96
D
Sbjct: 52 NDQ 54
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 29.1 bits (66), Expect = 0.77
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 68 FKAFIVKRGRQYANDEEIKERFEYFKQDG 96
K F K G + +++K+ F QD
Sbjct: 26 HKEFFAKVGLASKSLDDVKKAFYVIDQDK 54
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 28.8 bits (65), Expect = 0.98
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 35 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 93
S+TD ++ + + S FD K F G + + +++K+ F
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADS--FD-------HKKFFQMVGLKKKSADDVKKVFHILD 51
Query: 94 QDG 96
+D
Sbjct: 52 KDK 54
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 30.3 bits (67), Expect = 1.1
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 23/144 (15%)
Query: 226 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKD---YPYKNANGEKFK-CAYDKSKVKL 281
++ E S C G + T + D Y + + CA +++
Sbjct: 198 KIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIE 257
Query: 282 FT---GKDFLHFNGSET---MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDL 335
+ G+D + G + + ++ + +L S + + L
Sbjct: 258 YGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQS-------------VSQNPNDPHL 304
Query: 336 GHAVLLVGYGKQDNIPYWLVRNSW 359
GHA+ +VG K ++ + N W
Sbjct: 305 GHALAVVGNAKINDQEKLIYWNPW 328
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 30.4 bits (68), Expect = 1.2
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 134 ADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGKFS---NYL 189
RE+ K + P + + ++ G A + GK S YL
Sbjct: 171 VSREQAGKAGLG-TVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYL 228
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 30.3 bits (69), Expect = 1.2
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 56 SLTFDN-------------ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHER 102
S TFDN + + + K + + + + DG +
Sbjct: 237 SKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKI 296
Query: 103 YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEK-MLMEVEKDGPV 152
G + I G K T I KV EK P
Sbjct: 297 VG------QPATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHEKLSPT 341
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 28.4 bits (64), Expect = 1.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 35 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 93
+ + + D V A + A E + +F+ +KAF K G + ++IK+ F
Sbjct: 2 AFSGILADADVAAALK--ACEAADSFN-------YKAFFAKVGLTAKSADDIKKAFFVID 52
Query: 94 QDG 96
QD
Sbjct: 53 QDK 55
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking,
activity, smase D, hydrolase; HET: EPE; 1.75A
{Loxosceles laeta} PDB: 2f9r_A*
Length = 285
Score = 29.3 bits (65), Expect = 1.9
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 52 AIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDR 111
A+E +TF T+ GR E + ++ + G +++ D
Sbjct: 30 ALEADVTFKGSVPTYTYHGTPCDFGRDCIRWEYFNVFLKTLRE-----YTTPGNAKYRDG 84
Query: 112 SPEEILC-KTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPD 154
+L KTG +++ A +++L +G
Sbjct: 85 FILFVLDLKTGSLSNDQVRP---AGENVAKELLQNYWNNGNNGG 125
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 28.0 bits (63), Expect = 2.3
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 35 SLTDRITD-QVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK 93
S+TD ++ + A + + F+ + F G + ++K+ F +
Sbjct: 1 SITDILSAEDIAAALQECQDPDT--FE-------PQKFFQTSGLSKMSASQVKDIFRFID 51
Query: 94 QDG 96
D
Sbjct: 52 NDQ 54
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 27.6 bits (62), Expect = 2.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 68 FKAFIVKRGRQYANDEEIKERFEYFKQDG 96
+K+F G ++IK+ F QD
Sbjct: 27 YKSFFSTVGLSSKTPDQIKKVFGILDQDK 55
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 28.7 bits (64), Expect = 2.5
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 23 LLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENI-LETFKAFIVKRGRQYAN 81
+ G L L T R+ D D GS + + F F + +
Sbjct: 70 VYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLML-CYIYD 128
Query: 82 DEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEK 141
E+ F+ G+ + EF + + K A E
Sbjct: 129 FFELTVMFDEIDASGNMLVDE---EEF-----KRAVPKLEAW---------GAKVEDPAA 171
Query: 142 MLMEVEKDG 150
+ E++K+G
Sbjct: 172 LFKELDKNG 180
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding
protei; 1.39A {Hypocrea virens}
Length = 120
Score = 27.7 bits (61), Expect = 3.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 166 PAGDQAACGSCWAFSIAGKFSNYL 189
+ A+CG+CW +G L
Sbjct: 53 AGWNSASCGTCWKLQYSGHTIYVL 76
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET:
E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Length = 174
Score = 28.3 bits (62), Expect = 3.0
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 17/130 (13%)
Query: 237 CDGCFFEPSIEYTHQAGLESEKD---YPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--N 291
C G + T+ + + + N G++F+ FTG
Sbjct: 24 CAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQ----------FTGLTPREMIYF 73
Query: 292 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR-KNDETCSPYDLGHAVLLVGYGK-QDN 349
G + + +L + G I E+ + GHA+ +VG K +
Sbjct: 74 GQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNG 133
Query: 350 IPYWLVRNSW 359
++ N W
Sbjct: 134 QEVIIIWNPW 143
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 3.1
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 58/161 (36%)
Query: 82 DEEIKERF---------------EYFKQDGHKKHERYGTSEFSDR--SPEEILCKTGFKW 124
D+++K ++ E F +K E + P E
Sbjct: 887 DKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMI-QEVIVEEDLEPFEA-------- 937
Query: 125 SERTYERIV-ADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFS--I 181
S+ T E+ +KV+ +P+ ++ V G F +
Sbjct: 938 SKETAEQFKHQHGDKVD--------IFEIPETGEYS---VKLLKGATLYIPKALRFDRLV 986
Query: 182 AG----KF--SNYLL--QYLNHIDQFCLLIFPGMLEGQYAI 214
AG + Y + ++ +D + +
Sbjct: 987 AGQIPTGWNAKTYGISDDIISQVDPIT----------LFVL 1017
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 28.9 bits (65), Expect = 3.2
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 53 IEGSLTFDN-------------ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKK 99
I S TFDN E A K+G + +D E + ++ +
Sbjct: 239 ILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSM 298
Query: 100 HERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPV 152
+S + I G I + + K+ EK P+
Sbjct: 299 -----NPAIVGKSVQHIANLAGLTVPADARVLIAEETKVGAKIPYSREKLAPI 346
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP:
d.3.1.1 PDB: 1y4h_A
Length = 183
Score = 27.2 bits (59), Expect = 6.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 335 LGHAVLLVGYGKQDNIPYWLVRNSW 359
LGHA+ +VG K ++ + N W
Sbjct: 128 LGHALAVVGNAKINDQEKLIYWNPW 152
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 27.2 bits (61), Expect = 7.7
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 77 RQYANDEEIKERFEYFKQDGHKKHERYG---TSEFSDRSPEEILCKTGFKWSERTYERIV 133
R+ + + I F F D G T+E IL K +
Sbjct: 116 RKQLSKKLIYCAFRVFDVDND------GEITTAEL-----AHILYNGNKKGNITQR---- 160
Query: 134 ADREKVEKMLMEVEKDG 150
D +V++M+ +V+K+
Sbjct: 161 -DVNRVKRMIRDVDKNN 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 27.6 bits (61), Expect = 7.8
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 40 ITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYF 92
+++ + + +E SL ++ KR ++IK + F
Sbjct: 279 MSEDAYTVLTRIGLETSLR-YAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 27.8 bits (60), Expect = 8.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 84 EIKERF-EYFKQDGHKKHERYGTSEFSDRSPEEIL 117
E++E F +F+ H R R +++L
Sbjct: 61 EMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVL 95
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 25.7 bits (57), Expect = 9.1
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 18/71 (25%)
Query: 83 EEIKERFEYFKQDGHKKHERYG---TSEFSDRSPEEILCKTGFKWSERTYERIVADREKV 139
E++ F+ +G G E + + + + +E
Sbjct: 7 AELEAAFKKLDANGD------GYVTALEL-----QTFMVTLDAYKALSKDK----VKEAS 51
Query: 140 EKMLMEVEKDG 150
K++ +K+
Sbjct: 52 AKLIKMADKNS 62
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.3 bits (60), Expect = 9.8
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 273 AYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYN 319
+ KS + + K F +N S T+ + + +D + +N
Sbjct: 371 DHLKSFMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFN 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,141,417
Number of extensions: 371906
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 103
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)