BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6674
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 52/54 (96%)
Query: 205 ARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
++ KK+FIC+FC RHFTKSYNLLIHERTHTDERPY+CD+C+KAFRRQDHLRDHR
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + HR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
F+C C+R F + +L H R+HT+E+PY C +CN+AF R+D L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 206 RPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
R ++++ C C + F+ S +L H RTHT E+PY CD C KAF ++ HL H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 27.3 bits (59), Expect = 8.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 230 ERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
E + R Y CD C K+F L HR
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHR 38
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S +L H R HT ++P+ C +C + F R DHL H
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F+ S NL H R HT ++P+ C +C + F R DHL H
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S L H R HT ++P+ C +C + F R DHL H
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S +L H R HT ++P+ C +C + F R DHL H
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S L H R HT ++P+ C +C + F R DHL H
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S L H R HT ++P+ C +C + F R DHL H
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 52
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S L H R HT ++P+ C +C + F R DHL H
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++S +L H+RTHT E+PY C C K+F R DHL H+
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRR----QDHLRDH 257
K + C C + F++S NL H+RTHT E+PY C C K+F + Q H R H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++ NL H+RTHT E+PY+C C K+F + HLR H+
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++ NL H+RTHT E+PY C C K+F R+D L H+
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++ +L H+RTHT E+PY C C K+F R+D+L H+
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F+ +L H+RTHT E+PY C C K+F ++ +LR H+
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
K + C C + F++S +L H+RTHT E+PY C C K+F
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C +C + F +Y L IH RTHT E+PY C+ C A ++ LR H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
+K F CR C R+F++ +L H RTHT E+P++CD+C + F
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++ NL H R HT ++P+ C +C + F +Q L H
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH 53
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
+K F CR C R+F++ L H RTHT E+P++CD+C + F
Sbjct: 32 QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++ NL H R HT ++P+ C +C + F + L H
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH 53
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 47.8 bits (112), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+K + C C + F++S L+ H+R HT E+PY C C KAF + L +H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQD----HLRDH 257
C C + F Y+L H+ +H+ E+PYSC VC F+R+D H+R H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDE--RPYSCDVCNKAFRRQDHLRDH 257
+K + C C F + + H R+H +PY C C K F R DHL H
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
K F C+ C R F++S +L H RTHT E+P+SC C K F R D L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
K + C F C R F++S L H+R HT +P+ C C + F R DHL+ H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 202 ASTARPKKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
AS RP F+C + C++ + K +L +H R HT E+PY CD C + F R D L+ H
Sbjct: 1 ASEKRP---FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 181 TPTKTIVTDSISKPVQKSTPVASTAR---PKKQFICRF--CSRHFTKSYNLLIHERTHTD 235
T T T K KS+ + + R +K + C + C F +S L H R HT
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 236 ERPYSCDVCNKAFRRQDHL 254
RP+ C C++AF R DHL
Sbjct: 64 HRPFQCQKCDRAFSRSDHL 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
+K F C F C + F+ +NL H R HT +RPY C D CNK F + +L+ H
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 212 ICRFCSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
+C C + F +S L H+ HT E+P+ C + C K F +LR H
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
++ F C FC + + + L H R H RP SC C K FR Q + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
K + C C F NL H+ HT E+PY C++C F R +L+ H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C F + NL H R H+ E+P
Sbjct: 43 EKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
++PY CD C +FR + +L H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHK 37
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 181 TPTKTIVTDSISKPVQKSTPVASTAR---PKKQFICRF--CSRHFTKSYNLLIHERTHTD 235
T T T K KS+ + + R +K + C + C F +S L H R HT
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 236 ERPYSCDVCNKAFRRQDHL 254
RP+ C C++AF R DHL
Sbjct: 63 HRPFQCQKCDRAFSRSDHL 81
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHL 254
C F +S L H R HT +P+ C VCN++F R DHL
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
C++ +TKS +L H RTHT E+PY C + C+ F R D L H
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C R F++S L H R HT ++P+ C +C + F R DHL H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHT 234
+K F CR C R+F++S +L H RTHT
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
++IC C K L H RTHTD RPY C CN +F+ + +L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFR----RQDHLRDH 257
+K F C F C + F +S NL IH+RTHT E+P+ C+ C++ F R+ H+ H
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 220 FTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
F Y L+ H R HT E+P+ C C K F R ++L+ H+
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C + F Y L +H R HT E+P+ C C K + R+++L +H
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 206 RPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
R ++ F C C F + L +H +HT E PY C C++ F ++ L+ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHT---DERPYSCDVCNKAFRRQDHLRDH 257
+K F C C + + + NLL HE + E+ ++C VC + FRR+ LR H
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
C + + KS +L H RTHT E+P+SC C + F R D L HR
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 208 KKQFICRF--CSRH---FTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
+K+F+C + CSR F Y L++H R HT E+P+ C + C K++ R ++L+ H
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAF 248
C + +++ NL H R+HT E+PY C + C+KAF
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHE-RTHTDERPYSCDV--CNKAFRRQDHLRDH 257
+K ++C CS+ F+ + + H+ RTH++E+PY C + C K + LR H
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ C C + F ++L+ H + HT +PY C++C K F +D H
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C + FT H H RPY C VC K F+ + HL H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
F C+ C + F +S L H H+D RPY C C K F ++ ++ H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 201 VASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ S RP + C++C + F + ++ H HT E+P+ C VC KAF + +L H
Sbjct: 23 IHSDTRP---YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 195 VQKSTPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTD 235
++K T + + +P K C+ C + F++S NL+ H R HT
Sbjct: 45 MKKHTFIHTGEKPHK---CQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
S+ R +KQ C C + F Y+L H+ +H+ E+PYS
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDERP 238
FIC C + FT NL+IH++ HT ERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 211 FICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
++C F C + F K L +H+ +HT + PY C + C+K F L+ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQD----HLRDH 257
K + C+ C S +L H R H+DERP+ C +C A R HLR H
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKA 247
C C + F++ L H R HT +PY C C+ A
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYA 45
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 238 PYSCDVCNKAFRRQDHLRDH 257
P+ C+VC K F R+D L+ H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH 27
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.031, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
KK F C C + FT+S +L +H+R HT E+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.035, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C C KAF R HL +HR
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHR 32
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
K++IC F C + K++ L H HT E+P+ C + C K F HL H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
C + FT ++L H THT E+ ++C D C+ F + +++ H
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+PYSC+VC KAF HL H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQH 31
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + F NL++H+RTHT E+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDH 257
RTHT E+PY+C C+K FR++ L H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMH 34
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.068, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K ++C +C + F S L+ H+R HT E+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY CD C KAF L H+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQ 32
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 196 QKSTPVASTARPKKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQ 251
+K+ PV K++IC F C + K++ L H HT E+P+ C + C K F
Sbjct: 3 EKALPVVY-----KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSL 57
Query: 252 DHLRDH 257
HL H
Sbjct: 58 HHLTRH 63
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 211 FICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
++C F C + F K L +H+ +HT + PY C + C+K F L+ H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.082, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
++ +IC C + FT NL+ H++ HT E+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
ERPY C VC KAF + +L H+
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQ 32
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
+K++ CR+C + F + HE HT ER Y C C K+F
Sbjct: 48 EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF 88
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
+IC C R + +L H H+ E+ Y C C K F
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C+ CS+ FT+ +L H++THT E+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.37, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C VC+KAF ++ HL H+
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQ 32
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
T E+P+ CD C+K+FR++ L HR
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHR 32
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+PY C VC KAFR HL H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH 31
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C+ C + F S +L+ H H+ ERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+S + +K F C C + F+ LL+H++TH +E+P
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+S + +K ++C+ C + FT+S L IH R HT E
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+PY C C KAF + L HR
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHR 30
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 209 KQFICRFCSRHFTKSYNLLIH-ERTHTDERPYSCDV 243
K +IC+ C + F++ +L H ++ HT ERP+ C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.6 bits (70), Expect = 0.47, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
+PY C C K F R DHL H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGH 31
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
ERPY C+ C K F R HL +H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEH 31
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + + +NL +H++ HT ERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+S + +K ++C C + F L+IHER HT E
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERP 238
C C + F++ Y L+ H+RTH E+P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 8.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E PY C C KAF R+ L H+
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQ 32
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C C K FRR HL H+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQ 32
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 211 FICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
++C F C + F K L +H+ +HT + PY C + C+K F L+ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.26, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FTK L +H++ HT E+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C +C K+F ++ L H+
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ 32
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + FT++ +L H+R HT E+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+P+ C+ C K F + HL H+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQ 32
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K +IC C + FT NL+ H++ HT ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
+S + +K + C+ C + F++ +L +HER HT P S
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
ERP+ C+ C K F R+ HL H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGH 31
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + FT++ L H+R HT E+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F++S +L H+R HT E+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+ Y CDVC K F + HL+ H+
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQ 32
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.33, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
+ E PY C C KAF R+D L H+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQ 30
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.35, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C+ C + F+++ +L+ H+R HT E+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C C KAF + HL H+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQ 32
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 234 TDERPYSCDVCNKAFRRQD----HLRDH 257
+ E+PYSC VC F+R+D H+R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.42, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C+ C + F+++ LL HER H+ E+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K + C C + F L+IH RTHT E+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 237 RPYSCDVCNKAFRRQD----HLRDH 257
+PY C C KAFR + H+R H
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.6 bits (70), Expect = 0.46, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 204 TARPKKQFICRFCSRHFTKSYNLLIHERT--HTDERPYSCDVCNKAFRRQDHLRDH 257
T + + C+ CSR +T N H T + + Y C C K F R+D++ H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.48, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
++ + C C + F + L++H+R HT E+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.48, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C K F + HL HR
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR 32
Score = 27.3 bits (59), Expect = 9.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FT++ +L H HT E+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.50, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+K + C C + F NL++H+RTHT E
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 27.3 bits (59), Expect = 9.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C KAF + +L H+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQ 32
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C K F + HL HR
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR 32
Score = 27.7 bits (60), Expect = 6.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FT++ +L H R HT +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.52, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K F C C + FT+ L +H++ HT E+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FT NL H++ HT E+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 206 RPKKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
RP K C C + F +S +L+ H+R HT E+P
Sbjct: 11 RPHK---CNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
ERP+ C+ C K+F + HL H+
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQ 32
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C K F + HL HR
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHR 32
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FT++ +L+ H HT E+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.59, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERP 238
CR C + F+ + L++H+R HT E P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.64, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C K+F ++ HL HR
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHR 32
Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K +IC C + F + +L H R HT E+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY CDVC KAF L H+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ 32
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F+ +L H+R H+ E+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 226 LLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
L IHER H +RP+ C+ C+ ++ +L H
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.67, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDER 237
S+ K F C +C++ F ++L H R HT+E+
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
K F C+ C R F++S +L H RTHT E+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
+P+ C C + F R DHL+ H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTH 21
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 0.68, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F + NL H+R HT E+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C C KAF ++ +L H+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ 32
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.72, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY CDVC+K+FR L H+
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQ 32
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F +L +H+R HT E+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.72, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F+ L+IH RTH+ E+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.8 bits (68), Expect = 0.75, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDER 237
+K F C C + F NL+ H+R HT E+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+P+ C C KAFR+ HL H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH 31
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C+ C + F ++ +L H R HT E+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
S+ +K + C C + F ++ L++H+RTH+ E
Sbjct: 4 GSSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
T E+PY C C KAF R L H+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQ 32
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+S + +K ++C C + F + + + HER HT E
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDH 257
+ E+PY C C KAF R+ H H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH 29
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+S + KK +C C + F +S L H+R H+ E+P
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDERP 238
+ C C + F+ LL+H+R HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.93, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+PY C+ C K F + HL +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNH 31
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FT++ +L H R HT E+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.96, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
T E+PY C C KAFR + +L H+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQ 32
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.97, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C K F + HL +H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQ 32
Score = 27.7 bits (60), Expect = 6.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + FT++ +L H+R HT +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE 236
K ++C C + F L+IH RTHT E
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 27.3 bits (59), Expect = 8.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
+PY C+ C KAFR + +L H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIH 31
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + F+ S L H+R HT E+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDER 237
+S + +K + C C + F+ L++H+R HT E+
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDER 237
+ F+C +C + FT+S L H+RTHT E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
+ C+VC +AF RQ+HL+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRH 21
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDER 237
F+C C+R F + +L H R+HT+E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDER 237
+K + C C + FT+ L IH+++HT ER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C C KAF R+ L H+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQ 32
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
+S + ++ + C+ C + F + +L +HER HT P S
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+S + +K + C C + F L+IH+RTHT E
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDH 257
RTH+ E+PY C +C+ F + ++ H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F K L +H+R HT E P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
++PY C+ C K F + HL HR
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHR 32
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
KK + C C + FT++ +L H HT E+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDER 237
CR C + FT S NL H R H+ E+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C KAFR +L H+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQ 32
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERP 238
C C + F ++ N + H R HT E+P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F++ L H+RTHT E+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K + C C + F+ SY L H THT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C K FR +L H+
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQ 32
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C+ C + F + LL H+R H+ E+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY+C+ C KAF L++H+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQ 32
Score = 27.3 bits (59), Expect = 8.2, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F L H+R HT E+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F+++ L H+R HT E+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 236 ERPYSCDVCNKAFRRQD----HLRDH 257
E+PY CD C KAF ++ H+R H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
+K + C C + F++ +L++H R HT P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + + + +L H+R HT E+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K + C C + F+++ L H+R HT E+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+PYSC+ C KAF + L H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHK 30
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+S + +K + C C + FT L++H+ HT +P
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDHR 258
R T +P+ C C+++F R DHL HR
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+PY C+ C F + HLR H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAH 30
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K++ C C + F+++ L H++ HT E+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + F++ L +H + HT E+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDER 237
+K + C C + FT L IH++ HT ER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C C K+F + LR H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ 32
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C VC KAF + L H+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ 32
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F+ +L +H+R H+ ++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E PY C C K F R+D L H+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQ 32
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
Y+C +CN+AF R+D L H
Sbjct: 3 YACGLCNRAFTRRDLLIRH 21
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
E+PY C+ C KAFR + L H+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQ 32
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + C C + F +L IH+ TH+ E+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTD 235
K+ F+CR C FT N H + HTD
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTD 32
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
T +P+ C C+ +F R DHL HR
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHR 27
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 213 CRF--CSRHFTKSYNLLIHER-THTDERPYSCD--VCNKAFRRQDHLRDH 257
C F C R F+ L H++ H ++ +SC C K+F + HL++H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K + C C++ F+ L++H+R+HT +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDER 237
F+C C+R F + L H R+HT+E+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
QF+C C F+ S +L H R E C VC K F D DH
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTSTDSALDH 119
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K C C R FT +L H+R HT E+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHT 234
S+ + +K F C C + F+ S L HER HT
Sbjct: 4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDER 237
C C + FT++ +L+ H R HT E+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHERTHTDER 237
KKQ IC C + + K+ +L H R HT ER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 5.0, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHT 234
+S + +K ++C C + FT L++H+ HT
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 5.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+S + +K C C + F+ L+IH+R HT E P
Sbjct: 2 SSGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
+ C+VC +AF RQ++L+ H
Sbjct: 3 FVCEVCTRAFARQEYLKRH 21
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDER 237
F+C C+R F + L H R+HT+E+
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.1 bits (61), Expect = 5.0, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
RPYSC VC K F + + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETH 22
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 5.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K + CR C F+++ +L +H+ H E+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+S + +K C C + F+ L+IH+R HT E
Sbjct: 2 SSGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
T E P+ C+ C K F HL H+
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQ 32
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 207 PKKQFICRF--CSRHFTKSYNLLIHERTHTDER 237
P K F C F C++ F + YN+ H +TH ++R
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
++ + C C + F +L+ H R+HT E+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+PY C++C FR L+ H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSH 30
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDER 237
KK + C+ C + F + +L H+R HT ER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDER 237
+K + C C + + + NL +H+R H E+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 8.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + F+ L H R HT E+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 8.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+P+ CD+C K+F + L H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 9.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
+K F C C + F + H+R+H+ E+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 9.7, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERP 238
++ + C C + F + L +H+R H E+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,092,993
Number of Sequences: 62578
Number of extensions: 157381
Number of successful extensions: 749
Number of sequences better than 100.0: 168
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 344
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)