RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6674
(258 letters)
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 76.4 bits (189), Expect = 2e-18
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + HR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 68.7 bits (169), Expect = 2e-15
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K F C C R F +S H P D + + HL +
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEV 78
Score = 33.2 bits (77), Expect = 0.013
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 209 KQFICRFCSRHFTKSYNLLIHE---RTHTDER 237
+ +K+Y+L + ER
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 76.7 bits (190), Expect = 3e-18
Identities = 44/50 (88%), Positives = 49/50 (98%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K+FIC+FC RHFTKSYNLLIHERTHTDERPY+CD+C+KAFRRQDHLRDHR
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 62.1 bits (152), Expect = 8e-13
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + C C + F + +L H H+ E+P+ C C K F + L H+
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 54.4 bits (132), Expect = 5e-10
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 223 SYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
S ++ + C C + F + +L H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE 37
Score = 42.8 bits (102), Expect = 8e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C+ C + F +S L +H+ H +
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 73.7 bits (182), Expect = 1e-17
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ F+C C+R F + +L H R+HT+E+PY C +CN+AF R+D L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 41.7 bits (99), Expect = 7e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 237 RPYSCDVCNKAFRRQDHLRDHR 258
R + C+VC +AF RQ+HL+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 32.5 bits (75), Expect = 0.014
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHE-RTHTDE 236
K + C C+R FT+ L+ H + H+
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 74.6 bits (184), Expect = 1e-17
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C + C F +S L H R HT +P+ C VCN++F R DHL H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 70.7 bits (174), Expect = 4e-16
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 203 STARPKKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDHR 258
++ C + C++ +TKS +L H RTHT E+PY C + C+ F R D L H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Score = 40.7 bits (96), Expect = 4e-05
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTD 235
K F C C+R F++S +L +H + H +
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 39.5 bits (93), Expect = 1e-04
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 220 FTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
S L R H + P C K + + HL+ H
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL 37
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 74.1 bits (183), Expect = 2e-17
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C F +S L H R HT RP+ C C++AF R DHL H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 69.5 bits (171), Expect = 1e-15
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
C + C + +TKS +L H RTHT E+PY CD C F R D L H
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 37.9 bits (89), Expect = 3e-04
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDH 257
T C K + + HL+ H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH 26
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTH 233
+ F C+ C R F++S +L +H + H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 73.0 bits (180), Expect = 3e-17
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERT--HTDERPYSCDVCNKAFRRQDHLRDHR 258
+ C+ CSR +T N H T + + Y C C K F R+D++ H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 56.0 bits (136), Expect = 6e-11
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 230 ERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
E T E Y C VC++ + + H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 37.5 bits (88), Expect = 3e-04
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHT 234
K + C FC + FT+ N+ H +
Sbjct: 39 KVYPCPFCFKEFTRKDNMTAHVKIIH 64
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 72.1 bits (178), Expect = 9e-17
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K F CR C R+F++S +L H RTHT E+P++CD+C + F R D + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 68.3 bits (168), Expect = 3e-15
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + C C R F++S +L H R HT ++P+ C +C + F R DHL H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 39.0 bits (92), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
K F C C R F +S H + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 71.2 bits (175), Expect = 2e-16
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 193 KPVQKSTPVASTARPKKQFICR--FCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRR 250
+P + + + + C C R F++S L H R HT ++P+ C +C + F R
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 251 QDHLRDHR 258
DHL H
Sbjct: 62 SDHLTTHI 69
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHT 234
K F CR C R+F++S +L H RTHT
Sbjct: 48 KPFQCRICMRNFSRSDHLTTHIRTHT 73
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 70.9 bits (174), Expect = 2e-16
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTD---ERPYSCDVCNKAFRRQDHLRDHR 258
C C + +L H+R H + + C+ C K F + D + HR
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 47.0 bits (112), Expect = 1e-07
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDHR 258
+ C++C R++ L H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ 27
Score = 42.4 bits (100), Expect = 7e-06
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERT-HTDERPYSCDVCNKAF 248
+F C FC + F K ++ H H + +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 69.7 bits (171), Expect = 6e-16
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 203 STARPKKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
+ + IC C + + KS +L H RTHT E+P+SC C + F R D L HR
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 42.0 bits (99), Expect = 7e-06
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 229 HERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
+ + R + C C K + + HL+ H
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAH 38
Score = 32.7 bits (75), Expect = 0.016
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTH 233
K F C + C R F +S L H RTH
Sbjct: 46 KPFSCSWKGCERRFARSDELSRHRRTH 72
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 69.5 bits (171), Expect = 8e-16
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE--RPYSCDVCNKAFRRQDHLRDH 257
K + C C FT+S + +H E + C C+ R+ L H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 60.6 bits (148), Expect = 2e-12
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 225 NLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ RTH+ E+PY C +C+ F + ++ H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 44.4 bits (106), Expect = 1e-06
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 204 TARPKKQFICRFCSRHFTKSYNLLIHERT-HTDERPYS 240
+F C C + +L +H R H+ P S
Sbjct: 39 HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 70.2 bits (173), Expect = 1e-15
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C F C R F++S L H+R HT +P+ C C + F R DHL+ H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 67.9 bits (167), Expect = 9e-15
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
K F C+ C R F++S +L H RTHT E+P+SC C K F R D L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 65.2 bits (160), Expect = 8e-14
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
+ F+C C++ + K +L +H R HT E+PY CD C + F R D L+ H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Score = 37.9 bits (89), Expect = 6e-04
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 234 TDERPYSCD--VCNKAFRRQDHLRDH 257
+++RP+ C CNK + + HL+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH 27
Score = 32.5 bits (75), Expect = 0.042
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTH 233
K F CR+ C + F +S L+ H H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 68.4 bits (168), Expect = 2e-15
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 211 FICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
++C F C + F K L +H+ +HT + PY C C+K F L+ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 62.3 bits (152), Expect = 5e-13
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ C C + F+ L HE+ H D C+ + H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 67.9 bits (167), Expect = 5e-15
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C C + F Y+L H+ +H+ E+PYSC VC F+R+D + H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 61.7 bits (151), Expect = 9e-13
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE--RPYSCDVCNKAFRRQDHLRDH 257
K + C C F + + H R+H +PY C C K F R DHL H
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 43.2 bits (103), Expect = 5e-06
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDHR 258
+ +C++C K FR HL H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHK 27
Score = 30.2 bits (69), Expect = 0.16
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 204 TARPKKQFICRFCSRHFTKSYNLLIHE-RTHTDER 237
K +IC+ C + F++ +L H + H+
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 66.0 bits (162), Expect = 1e-14
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
C CS + L IHER H +RP+ C+ C+ ++ +L H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 46.3 bits (111), Expect = 2e-07
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + P C C+ + + LR H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
Score = 34.0 bits (79), Expect = 0.005
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ F C +CS + NL H + +
Sbjct: 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 66.7 bits (164), Expect = 1e-14
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
C+ C S +L H R H+DERP+ C +C A R L H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 65.1 bits (160), Expect = 5e-14
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
C C + F++ L H R HT +PY C C+ A L H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 47.8 bits (115), Expect = 1e-07
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 232 THTDERPYSCDVCNKAFRRQDHLRDHR 258
+ P+ C+VC K F R+D L+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHM 28
Score = 45.1 bits (108), Expect = 9e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ F C+ C S L +H R+HT + S
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 67.6 bits (166), Expect = 3e-14
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
C R F Y L++H R HT E+P+ C C K++ R ++L+ H
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 64.5 bits (158), Expect = 3e-13
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
K C F C + +++ NL H R+HT E+PY C + C+KAF H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 62.2 bits (152), Expect = 2e-12
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 209 KQFICRF--CSRHFTKSYNLLIH-ERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
K ++C CS+ F+ + + H RTH++E+PY C + C K + LR H
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 57.2 bits (139), Expect = 1e-10
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 209 KQFICRFCSRHFTKSYNLLIH---ERTHTDERPYSCDVCN-----KAFRRQDHLRDH 257
CS+ F L+ H E H + + + C + F+ Q L H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 40.3 bits (95), Expect = 1e-04
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E D C++ F Q+ L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHH 22
Score = 34.9 bits (81), Expect = 0.010
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHT 234
K ++C+ C++ +T +L H +T
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 65.6 bits (161), Expect = 5e-14
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C C + F Y L +H R HT E+P+ C C K + R+++L +H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 65.2 bits (160), Expect = 9e-14
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ F C C F + L +H +HT E PY C C++ F ++ L+ H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 61.8 bits (151), Expect = 1e-12
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 209 KQFICRFCSRHFTKSYNLLIHER---THTDERPYSCDVCNKAFRRQDHLRDH 257
K F C C + + + NLL HE + E+ ++C VC + FRR+ LR H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 42.5 bits (101), Expect = 2e-05
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDH 257
+ C C+K F + +L+ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH 26
Score = 30.6 bits (70), Expect = 0.22
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIH-ERTHTDER 237
+ C CS+ F + +L H + H+
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 64.1 bits (157), Expect = 8e-14
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHER-THTDERPYSCD--VCNKAFRRQDHLRDHR 258
C F C R F+ L H++ H ++ +SC C K+F + HL++H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 61.8 bits (151), Expect = 5e-13
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
K F C C + F +L H + H+D R Y C+ +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 42.9 bits (102), Expect = 4e-06
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 233 HTDERPYSCDV--CNKAFRRQDHLRDHR 258
+ CD C + F + +L H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHK 29
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 64.0 bits (157), Expect = 8e-14
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C F NL H+ HT E+PY C++C F R +L+ H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 55.9 bits (136), Expect = 8e-11
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 223 SYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
++ H ++PY CD C +FR + +L H+
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
Score = 40.5 bits (96), Expect = 2e-05
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPY 239
K + C C F + NL H R H+ E+PY
Sbjct: 44 KPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 65.8 bits (161), Expect = 1e-13
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
C + F Y L+ H R HT E+P+ C C K F R ++L+ H+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
K F C F C + F +S NL IH+RTHT E+P+ C+ C++ F + H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 58.5 bits (142), Expect = 5e-11
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYS---------CDVCNKAFRRQDHLRDH 257
+ C R F+ + L+ H P C K+F+ + L +H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 56.9 bits (138), Expect = 2e-10
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
L + + C++ F L H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTH 44
Score = 49.6 bits (119), Expect = 7e-08
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCD 242
K F C F C R F S + H HT ++
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 63.6 bits (156), Expect = 1e-13
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
C+ C + F +S L H H+D RPY C C K F ++ ++ H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 62.8 bits (154), Expect = 3e-13
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + C++C + F + ++ H HT E+P+ C VC KAF + +L H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 31.2 bits (72), Expect = 0.058
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHT 234
K C+ C + F++S NL+ H R HT
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 30.1 bits (69), Expect = 0.14
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 239 YSCDVCNKAFRRQDHLRDHR 258
+ C +C K+F+R L H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL 21
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 63.2 bits (155), Expect = 2e-13
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+++ C C + F+ S +L H RTHT E+PY CD C KAF ++ HL H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 56.3 bits (137), Expect = 6e-11
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 222 KSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
S + E + R Y CD C K+F L HR
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38
Score = 38.2 bits (90), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPY 239
C C + F + +L+ H R HT P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 62.9 bits (154), Expect = 2e-13
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++S L+ H+R HT E+PY C C KAF + L +H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 51.3 bits (124), Expect = 3e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 226 LLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
H+ E+PY C C KAF R L H+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34
Score = 39.0 bits (92), Expect = 7e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPY 239
K + C C + F+++ L+ H+R HT
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 61.5 bits (149), Expect = 3e-13
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 200 PVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCN 245
S+ R +KQ C C + F Y+L H+ +H+ E+PYS +
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 44.2 bits (104), Expect = 7e-07
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + +C++C K FR HL H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK 32
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 63.7 bits (156), Expect = 3e-13
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
K F C F C + F+ +NL H R HT +RPY C CNK F + +L+ H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 62.5 bits (153), Expect = 7e-13
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
+ +C C + F +S L H+ HT E+P+ C C K F +LR H
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Score = 58.7 bits (143), Expect = 2e-11
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ C C++ F + + H TH R + C C KAF L+ H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRH 53
Score = 43.7 bits (104), Expect = 5e-06
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPY 239
+ ++C F C++ F +S NL H TH +
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 65.2 bits (160), Expect = 4e-13
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++ +L H+RTHT E+PY C C K+F R+D+L H+
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 65.2 bits (160), Expect = 4e-13
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F++S +L H+RTHT E+PY C C K+F + L H+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Score = 64.4 bits (158), Expect = 6e-13
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
K + C C + F++ NL H+RTHT E+PY C C K+F R+D L H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 63.6 bits (156), Expect = 1e-12
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C C + F+ +L H+RTHT E+PY C C K+F ++ +LR H+
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Score = 63.6 bits (156), Expect = 1e-12
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
K + C C + F++ NL H+RTHT E+PY+C C K+F + HLR H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 60.9 bits (149), Expect = 1e-11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 220 FTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
S + + E+PY+C C K+F R DHL +H
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 37.0 bits (87), Expect = 0.002
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERP 238
K + C C + F++ L +H+RTHT ++
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 62.8 bits (154), Expect = 5e-13
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 216 CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C + FT H H RPY C VC K F+ + HL H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 60.9 bits (149), Expect = 2e-12
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + C C + F ++L+ H + HT +PY C++C K F +D HR
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HR 83
Score = 52.1 bits (126), Expect = 4e-09
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLR 255
K + C C++ F + H + + Y +
Sbjct: 64 KPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 45.1 bits (108), Expect = 1e-06
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 230 ERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ ++ Y C C K+F + H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHM 29
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 64.5 bits (158), Expect = 6e-13
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCD--VCNKAFRRQDHLRDH 257
K++IC F C + K++ L H HT E+P+ C C K F HL H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Score = 63.0 bits (154), Expect = 2e-12
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDERPYSCD--VCNKAFRRQDHLRDHR 258
K F C C + FT ++L H THT E+ ++CD C+ F + +++ H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Score = 60.7 bits (148), Expect = 2e-11
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHERTHTDERPYSC--DVCNKAFRRQDHLRDH 257
++C F C + F K L +H+ +HT + PY C + C+K F L+ H
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 55.7 bits (135), Expect = 9e-10
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDER--PYSCDV--CNKAFRRQDHLRDH 257
K F C C FT N+ H + + Y C C KAF++ + L+ H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Score = 53.8 bits (130), Expect = 5e-09
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ C C + F+ L HE+ H D C+ + H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 49.1 bits (118), Expect = 2e-07
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 229 HERTHTDERPYSCDV--CNKAFRRQDHLRDH 257
+ + Y C C A+ + L+ H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH 33
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 60.2 bits (147), Expect = 2e-12
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE----RPYSCDVCNKAFRRQDHLRDH 257
K + C C + F + L +H + + D + C C K F R++ + H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 57.2 bits (139), Expect = 3e-11
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 225 NLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ RTHT E+PY+C C+K FR++ L H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
Score = 55.2 bits (134), Expect = 2e-10
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 207 PKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAF 248
F+C C + FT+ + H + +
Sbjct: 44 VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 56.0 bits (136), Expect = 4e-11
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 209 KQFICRFCSRHFTKSYNLLIHE-RTHTDERPYSCDVCNKAF 248
K +IC+ C + F++ +L H + HT ERP+ C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 54.1 bits (131), Expect = 2e-10
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + +PY C C K F R DHL H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 7e-11
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+ Y CDVC K F + HL+ H+
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F++S +L H+R HT E+P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 55.0 bits (133), Expect = 8e-11
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
R T +P+ C C+++F R DHL HR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 35.4 bits (82), Expect = 8e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTH 233
K F C C R F++S +L +H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 54.8 bits (133), Expect = 8e-11
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E+PY C+ C F + HLR H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 44.8 bits (107), Expect = 4e-07
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
K + C C F + +L H HT P S
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+PYSC+VC KAF HL H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 42.1 bits (100), Expect = 4e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCD 242
K + C C + F S +L H R HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + ERPY C+ C K F R HL +H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ + C C ++F + +L+ H + H E+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 54.3 bits (130), Expect = 2e-10
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
++IC C K L H RTHTD RPY C CN +F+ + +L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 32.4 bits (73), Expect = 0.014
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDER 237
+ + C +C+ F NL H ++ +
Sbjct: 27 VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 53.7 bits (130), Expect = 2e-10
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E+PY C++C FR L+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
K + C C F L H R HT P S
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P+ CD+C K+F + L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 44.0 bits (105), Expect = 7e-07
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCD 242
K F C C + F L H HT E+P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 56.1 bits (134), Expect = 3e-10
Identities = 25/104 (24%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 159 PAFPGETSYPSLLLY-QPVSTASTPTKTIVTDSISKP----VQKSTPVASTARPKKQFIC 213
+ L Y Q + IV I P ++ QF+C
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 214 RFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C F+ S +L H R E C VC K F D DH
Sbjct: 78 PLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 27.2 bits (59), Expect = 3.0
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 151 NLKTSLEFPAFPGETSYPSLLLYQPVSTASTPTKTIVTDSISKPVQKSTPVASTARPKKQ 210
+KT + P E+SY L S + S V + T K
Sbjct: 46 IVKTLIHNPQLLDESSY--LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK-- 101
Query: 211 FICRFCSRHFTKSYNLLIH-ERTHT 234
+C C + FT + + L H + H
Sbjct: 102 -VCPVCKKEFTSTDSALDHVCKKHN 125
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.4 bits (129), Expect = 3e-10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ TD + Y+C+ C KAF R HL H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 36.8 bits (86), Expect = 3e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT+ ++L H++ HT + S
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + ++PY C C K F + HL H+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C+ C + F + +L H+R HT ER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C VC KAFR HL H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 41.3 bits (98), Expect = 6e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C+ C + F S +L+ H H+ ERP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+PY C+ C K+F ++ HL HR
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K +IC C + F + +L H R HT E+P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + E+PY C C KAF R HL +HR
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
Score = 40.9 bits (97), Expect = 8e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F + +L H R HT RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 6e-10
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C VC+KAF ++ HL H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C+ CS+ FT+ +L H++THT E+P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 7e-10
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+P+ C C KAFR+ HL H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C+ C + F ++ +L H R HT E+P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 7e-10
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+PY C C K ++R+ L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 44.8 bits (107), Expect = 4e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCD 242
K + C C + + + +L H+R HT E+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 8e-10
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C K FRR HL H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 40.5 bits (96), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F ++ +L H+ HT E+P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.2 bits (126), Expect = 9e-10
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T ++P+ C C K+FR + +L H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + F NL+ H+R HT E+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 9e-10
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+PY C+ C K F + HL HR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 41.7 bits (99), Expect = 4e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT++ +L H R HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.1 bits (126), Expect = 9e-10
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T +PY C+ C KAFR + +L H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 46.3 bits (111), Expect = 1e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K ++C C + F L+IH RTHT E S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P+ C C K++ ++ HL H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + + + +L H+R HT E+P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C K FR +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 41.7 bits (99), Expect = 4e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F + L H+R HT E+P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 1e-09
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T +PY C+ C KAF + L H+
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F+++ L H+R HT E+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 1e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C K F + HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT++ +L H+R HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+PY C+ C K + R+ +L H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 45.6 bits (109), Expect = 2e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + + + NL +H+R H E+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + E+P+ C+ C K F + HL H+
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ 32
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + FT++ +L H+R HT E+P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY CDVC KAF L H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSC 241
C C + F+ +L H+R H+ E+P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 2e-09
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+PY C+ C K F + HL HR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
Score = 41.7 bits (99), Expect = 5e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT++ +L+ H HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + ERP+ C+ C K F R+ HL H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ F C C + F + +L H R H+ E+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+P+ C C KAF L HR
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
Score = 44.0 bits (105), Expect = 7e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + F+ L H R HT E+P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+PY CD C KAF L H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 44.0 bits (105), Expect = 8e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K ++C +C + F S L+ H+R HT E+P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.3 bits (124), Expect = 2e-09
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C KAF + +L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 45.9 bits (110), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F NL++H+RTHT E S
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T ++PY C+ C K F + HL HR
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
Score = 41.0 bits (97), Expect = 9e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT++ +L H HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C +C K+F ++ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 46.4 bits (111), Expect = 9e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FTK L +H++ HT E+P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 2e-09
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+PY C+ C K F + HL HR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 41.3 bits (98), Expect = 6e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT++ +L H HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+ Y C+ C K F R L H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 42.1 bits (100), Expect = 4e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K++ C C + F+++ L H++ HT E+P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 51.1 bits (123), Expect = 2e-09
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 229 HERTHTDERPYSCDV--CNKAFRRQDHLRDHR 258
+ T E+P++C C F R D L HR
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 49.2 bits (118), Expect = 1e-08
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDERPYSCD 242
K F C + C F++S L H R+H+ +P
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E PY C C KAF R+ L H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ C C + F++ Y L+ H+RTH E+P
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C KAFR +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 41.3 bits (98), Expect = 7e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F NL H+ HT E+P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C K + + +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 46.8 bits (112), Expect = 7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + + +NL +H++ HT ERP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T ERP+ C+ C K+F + HL H+
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQ 32
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ C C + F +S +L+ H+R HT E+P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C KAF ++ +L H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 43.6 bits (104), Expect = 9e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F + NL H+R HT E+P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY+C+ C KAF L++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 42.5 bits (101), Expect = 3e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F L H+R HT E+P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+P+ C+ C K F + L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 44.1 bits (105), Expect = 6e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + FT++ L H+R HT E+P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY CDVC+K+FR L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F +L +H+R HT E+P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+PY C+ C K F ++ L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 44.1 bits (105), Expect = 6e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F++ L H+RTHT E+P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 3e-09
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T ER Y C C KAF R+ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 44.8 bits (107), Expect = 3e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ + C C + F + L++H+R HT E+P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.7 bits (122), Expect = 3e-09
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P+ C C F L H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
Score = 47.2 bits (113), Expect = 5e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCD 242
K F C+ C +F+ S +L H R+H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T +PY C+ C KAF L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 41.7 bits (99), Expect = 4e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K ++C C + F+ +L H+ HT E+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C KAFR + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 44.5 bits (106), Expect = 4e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F +L IH+ TH+ E+P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+P+ C+ C K F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 46.0 bits (110), Expect = 1e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCD 242
K F C C + F + H+R+H+ E+P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T +RPY C C KAF+ + L HR
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHR 32
Score = 45.2 bits (108), Expect = 3e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ + C C + F +L+ H R+HT E+P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+PY C+ C KAF + L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F+++ L H+R HT E+P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+ + C C+ F + LR H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
Score = 45.6 bits (109), Expect = 2e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + CR C F+++ +L +H+ H E+P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ + E+PY C+ C K F + HL +H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT++ +L H R HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+ Y+C C K+F R L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 44.8 bits (107), Expect = 4e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C+ C + F+++ LL HER H+ E+P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C KAF R+ L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 47.5 bits (114), Expect = 4e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT+ L IH+++HT ER
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P+ C C K+F L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 44.4 bits (106), Expect = 5e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + F+ S L H+R HT E+P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T ER Y C C KAF ++ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 44.1 bits (105), Expect = 7e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ + C C + F + L +H+R H E+P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T ERPY C VC KAF + +L H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 46.3 bits (111), Expect = 1e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ +IC C + FT NL+ H++ HT E+P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ T E+P+ C C K F R+ L H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHH 32
Score = 44.4 bits (106), Expect = 5e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + F++ L +H + HT E+P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 228 IHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C VC KAF + L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 43.7 bits (104), Expect = 9e-07
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSC 241
C C + F+ +L +H+R H+ ++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 6e-09
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C K+F ++ L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F K L +H+R HT E P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 49.9 bits (120), Expect = 6e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T ++PY C C KAF + L H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 209 KQFICRFCSRHFTKSYNLLIHER-THTDERPYSC 241
K + C C + F ++ +L+ H R HT E+P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 6e-09
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E PY C C K F R+D L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 45.2 bits (108), Expect = 3e-07
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ C C + F++ L+ H++TH+ + S
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 6e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C KAF + L H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 42.1 bits (100), Expect = 3e-06
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F+ +L H+ HT ++P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 6e-09
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T + + C C KAF R+ L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 44.0 bits (105), Expect = 6e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + FT+ L +H++ HT E+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 49.9 bits (120), Expect = 6e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY+C C K+FR L H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C+ C + F + LL H+R H+ E+P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 49.5 bits (119), Expect = 6e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E+PY CD C KAF ++ L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
K + C C + F++ +L++H R HT P S
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 7e-09
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
FIC C + FT NL+IH++ HT ERP
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 48.6 bits (117), Expect = 1e-08
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E P+ C C K F + +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 7e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C+ C K F + L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 44.5 bits (106), Expect = 6e-07
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F +L H HT E+P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 7e-09
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ ER + C C K F + + HR
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHR 32
Score = 45.2 bits (108), Expect = 3e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ C C + F ++ N + H R HT E+P
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 7e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C KAF + +L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT NL H++ HT E+P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 49.4 bits (119), Expect = 7e-09
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C KAF + HL H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C+ C + F+++ +L+ H+R HT E+P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 8e-09
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C KAF H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 42.2 bits (100), Expect = 3e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F + + H+R HT +RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 8e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C K+F + LR H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + FT L IH++ HT ER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.5 bits (119), Expect = 9e-09
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+PY C+ C KAF + L H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F L++HERTH S
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 9e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E+PY C C KAF + +L H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 47.2 bits (113), Expect = 5e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F+ L+IH RTH+ E+P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 9e-09
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + + + C C + F + HL H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K C C R FT +L H+R HT E+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ PY C C K+F + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 46.0 bits (110), Expect = 1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ C C + F+ LL+H+R HT E+P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T +PY C C K F + L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 47.1 bits (113), Expect = 6e-08
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C++ F+ L++H+R+HT +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+PY C C KAF + +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K +IC C + FT NL+ H++ HT ++P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 2e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P+ C C KAF + +L H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 48.2 bits (116), Expect = 2e-08
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + F NL++H+RTHT E+P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P+ C C K+F L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K CR C + F+ + L++H+R HT E P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 50.0 bits (119), Expect = 2e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 206 RPKKQFICRF--CSRH---FTKSYNLLIHERTHTDERPYSC 241
+ +C + C R F Y L+ H R HT E+
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 43.8 bits (103), Expect = 3e-06
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 207 PKKQFICRFCSRHFTKSYNLLIH-ERTHTDERPYSCDVC--------NKAFRRQDHLRDH 257
+ + C R F+ + L+ H H + VC K+F+ + L +H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 35.7 bits (82), Expect = 0.002
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 232 THTDERPYSCDVCNKAFRRQDHLRDH 257
+ C++ F L H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ ++ + C+ C K F + L H+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ 32
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + FT+S +L +H+R HT E+P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E+PY C C K+F L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 44.5 bits (106), Expect = 5e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C + F+ SY L H THT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ T E+P C C KAF + L H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 47.2 bits (113), Expect = 5e-08
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K C C + F L++H+RTH D++
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 47.9 bits (115), Expect = 3e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K F C C + F+ LL+H++TH +E+P
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 43.7 bits (104), Expect = 9e-07
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 230 ERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E+P+ C C KAF + +L H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.6 bits (114), Expect = 4e-08
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + E+ ++CD C K F LR H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 39.9 bits (94), Expect = 3e-05
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCD 242
K C C ++F L IH+R H E+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 47.1 bits (113), Expect = 6e-08
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 230 ERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E PY C C KAF R+D L H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH 29
Score = 45.2 bits (108), Expect = 2e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
+ C C + F + L+ H+RTH E S
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 46.5 bits (111), Expect = 8e-08
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
++C C + FT+ +L +H+R+ + P S
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.1 bits (97), Expect = 7e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ E PY C C K+F ++ L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 46.7 bits (110), Expect = 4e-07
Identities = 8/54 (14%), Positives = 14/54 (25%)
Query: 204 TARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + +LL E ++ C C +F L H
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 44.8 bits (105), Expect = 2e-06
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 221 TKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + ++ T + C C+ A+ L H
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
Score = 36.3 bits (83), Expect = 0.002
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+F C+ CS + L +H T + ++ R
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKR 66
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 44.6 bits (106), Expect = 4e-07
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
+ F+C C+R F + +L H R+HT+E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 42.3 bits (100), Expect = 2e-06
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
R + C+VC +AF RQ+HL+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.2 bits (105), Expect = 6e-07
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+PYSC C + F + L H+
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQ 30
Score = 38.8 bits (91), Expect = 5e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSC 241
K + C C F+ + L+ H++ HT + S
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 44.1 bits (105), Expect = 6e-07
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 230 ERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ +R Y C C K+FR++ L H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 41.0 bits (97), Expect = 9e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
+ + C+ C + F + +L +HER HT P S
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.1 bits (104), Expect = 7e-07
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ E P+ C C++ F ++++L H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 38.3 bits (89), Expect = 9e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
+ F C C R FT+ L+ HERTH + S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 42.3 bits (100), Expect = 3e-06
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 208 KKQFICRF--CSRHFTKSYNLLIHERTHTDER 237
KKQ IC C + + K+ +L H R HT ER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 32.7 bits (75), Expect = 0.007
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 236 ERPYSCDV--CNKAFRRQDHLRDHR 258
++ + C + C K + + HLR H
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHL 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 46.0 bits (108), Expect = 7e-06
Identities = 25/165 (15%), Positives = 42/165 (25%), Gaps = 19/165 (11%)
Query: 91 HRLSSTVNSPQRVSNSNNNNNNNTTTKTALALADID------------ALGNIEDEVPDD 138
T N Q + + T L + + D L N E D+
Sbjct: 42 TTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDE 101
Query: 139 LLETSSPETADLNLKTSLEFPAFPGETSYPSLLLYQPVS-------TASTPTKTIVTDSI 191
E + + D + + + G + L V + T +I
Sbjct: 102 ADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAI 161
Query: 192 SKPVQKSTPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
+ TA + C CS +L H +H
Sbjct: 162 VSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 66/213 (30%)
Query: 9 SSSQEEDIHSTEDVLA--LPDAGNIVKSLQTTLQEELLQRSLQNVALT-LQTAMVSSLQQ 65
+ +++ + +++ L ++V+ + +++L L L+ + +L
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-- 104
Query: 66 AALLPPNSPAAAALNLQALESYLTLHRLSSTVNSP-QRVSNSNNNNNNNTTTKTALAL-- 122
AA L + + +++Y+ P + SNS AL
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKKSNS--------------ALFR 147
Query: 123 ------ADIDAL----GNIE---DE----------VPDDLLETS---------SPETAD- 149
A + A+ GN + +E + DL++ S + A+
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 150 -----LNLKTSLEFPAFPGETSYPSLLLYQPVS 177
LN+ LE P+ + Y LL P+S
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDY---LLSIPIS 237
Score = 33.9 bits (77), Expect = 0.052
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 18/124 (14%)
Query: 40 QEELLQRSLQN--VAL-TLQTAMVSSLQQAALLPPNSPAA-------AALNLQALESYLT 89
++ LL + Q AL ++ A L+ L+P ++ A AA L +L ++
Sbjct: 1722 EKGLLSAT-QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--LASLADVMS 1778
Query: 90 LHRLSSTVNSPQR---VSNSNNNNNNNTTTKTALALADIDALGNIEDEVPDDLLETSSPE 146
+ L V R + + + + +A+ + E ++E
Sbjct: 1779 IESLVEVVF--YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 147 TADL 150
T L
Sbjct: 1837 TGWL 1840
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 39.9 bits (92), Expect = 2e-05
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+PYSC VC F+R+D + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHV 30
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDER 237
+ F+C + C + FT+S L H+RTHT E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 237 RPYSCDV--CNKAFRRQDHLRDHR 258
RP+ C C K F R D L+ H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 39.8 bits (93), Expect = 3e-05
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 207 PKKQFICRF--CSRHFTKSYNLLIHERTHTDER 237
P K F C F C++ F + YN+ H +TH ++R
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.0 bits (57), Expect = 2.5
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 236 ERPYSCDV--CNKAFRRQDHLRDH 257
++ + C C K F+R+ ++R H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSH 39
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.0 bits (95), Expect = 4e-05
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 192 SKPVQKSTPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQ 251
S ++PV + K+ + CR C+ + HER C C+ F
Sbjct: 2 SSGSSGASPVEN----KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSP 55
Query: 252 DHLRDHR 258
+ ++H
Sbjct: 56 ELKQEHE 62
Score = 39.5 bits (91), Expect = 1e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ +C +CS F S L + + + +C C + F+ + H+
Sbjct: 40 RNAAVCPYCSLRF-FSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 39.6 bits (92), Expect = 6e-05
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 207 PKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
P + +C+ C + L HE + R C C + +D L+ H
Sbjct: 14 PLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNVLVKD-LKTHP 62
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 39.3 bits (91), Expect = 8e-05
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 222 KSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
S + ++ H +R C C F R+ L +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
Score = 38.1 bits (88), Expect = 2e-04
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
+ C C F T + + C+ C K ++ L
Sbjct: 16 DRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDE 59
Score = 33.9 bits (77), Expect = 0.006
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 203 STARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPY 239
ST +K +C C + + L E + ++
Sbjct: 32 STLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 37.4 bits (87), Expect = 2e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 207 PKKQFICRFCSRHFTKSYNLLIHERTHTDER 237
P + + C FC R F + L H H +R
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 35.8 bits (82), Expect = 5e-04
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 236 ERPYSCDV--CNKAFRRQDHLRDHR 258
+RPYSCD C+KAF R L H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK 25
Score = 28.0 bits (62), Expect = 0.32
Identities = 6/29 (20%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTD 235
+ + C C + F ++++L+ H+++H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.3 bits (78), Expect = 0.002
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
K ++C C R F L H R HT E+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.4 bits (60), Expect = 0.48
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
+PY C C + F L+ H
Sbjct: 2 KPYVCIHCQRQFADPGALQRH 22
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.003
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 204 TARPKKQFICRFCSRHFTKSYNLLIHERT-HTDER---PYSCDVCNKAFRRQDHLRDH 257
+ + + C++C+ H + H + Y C CN +R D L +H
Sbjct: 12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Score = 28.6 bits (63), Expect = 0.87
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 211 FICRFCSRHFTKSYNLLIH-ERTHTDERPYSCDV 243
++C C+ + L H + H E + +
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
Score = 25.5 bits (55), Expect = 9.3
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+++ E Y C C + H
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFH 37
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.003
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDER 237
S+ K F C +C++ F ++L H R HT+E+
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 1.1
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDH 257
+ + ++C+ CNK F+ + L+ H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAH 28
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 31.8 bits (72), Expect = 0.015
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
++C C K F R DHL H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
Score = 30.7 bits (69), Expect = 0.035
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTHTDERP 238
+F C C + F +S +L H H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 31.4 bits (71), Expect = 0.018
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
++C C K F R DHL H
Sbjct: 3 FACPECPKRFMRSDHLTLH 21
Score = 31.0 bits (70), Expect = 0.024
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTHTDER 237
+F C C + F +S +L +H H +++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.0 bits (70), Expect = 0.023
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
+ Y+C +CN+AF R+D L H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
Score = 26.4 bits (58), Expect = 1.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERT 232
K + C C+R FT+ L+ H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 33.5 bits (76), Expect = 0.033
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 207 PKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C C R F K ++ IH R SCD C + +D H
Sbjct: 107 EFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFED-KEIH 155
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 30.8 bits (69), Expect = 0.038
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 234 TDERPYSCDV--CNKAFRRQDHLRDHR 258
+D++P+ C C + F +DHL H+
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHK 28
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.051
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 10/135 (7%)
Query: 108 NNNNNNTTTKTALALADIDALGNIEDEVPDDLLETSSPETADLNLKTSLEFPAFPGETSY 167
+ + + A ++ + + + AD N + + + G +
Sbjct: 4 RSARKAQSAIASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNAV 63
Query: 168 PSLLLYQPVSTASTPTKTIVTDSISKPVQKSTPVASTARP----------KKQFICRFCS 217
V+ +DSI+ + P A + P ++C C+
Sbjct: 64 GDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCN 123
Query: 218 RHFTKSYNLLIHERT 232
F+ L H R+
Sbjct: 124 ARFSTMSALSEHLRS 138
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 32.9 bits (74), Expect = 0.065
Identities = 5/45 (11%), Positives = 10/45 (22%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ IH E+ + + + LR
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 26.7 bits (58), Expect = 8.3
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 199 TPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDER 237
T + AR +K+ + +L +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.083
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHT 234
S+ + +K F C C + F+ S L HER HT
Sbjct: 4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.9 bits (61), Expect = 0.45
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 232 THTDERPYSCDVCNKAFRRQDHLRDHR 258
+ E+ + C+ C K F +L H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHE 32
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 29.3 bits (65), Expect = 0.10
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
++C C K F R D L H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 29.0 bits (64), Expect = 0.14
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
K C C + FT++ +L+ H R HT E+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.3 bits (67), Expect = 0.16
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 208 KKQFICRFCSRHFTKSY-NLLIH-ERTHTDERPYSCDVCNKAFRRQDHLRDH 257
+ + +C C+ K+ L H E + C C K F+ + L H
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.0 bits (64), Expect = 0.19
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 235 DERPYSCDVCNKAFRRQDHLRDHR 258
++PY+CD+C K ++ + L H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHY 27
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.23
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 12/41 (29%)
Query: 45 QRSLQNVALTLQTAMVSSLQQAALLPPNSPAAAALNLQALE 85
+++L+ LQ +SL+ L +S A A+ +E
Sbjct: 19 KQALKK----LQ----ASLK---LYADDSAPALAIKAT-ME 47
Score = 28.4 bits (62), Expect = 1.5
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 26/53 (49%)
Query: 80 NLQALESYLTLHRLSSTVNSPQRVSNSNNNNNNNTTTKTALALADIDALGNIE 132
L+ L++ L L+ + +A ALA I A +E
Sbjct: 21 ALKKLQASLKLY-------ADD----------------SAPALA-IKA--TME 47
Score = 26.8 bits (58), Expect = 5.0
Identities = 7/18 (38%), Positives = 7/18 (38%), Gaps = 3/18 (16%)
Query: 169 SLLLYQPVSTASTPTKTI 186
SL LY S P I
Sbjct: 28 SLKLYAD---DSAPALAI 42
Score = 26.1 bits (56), Expect = 8.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 14/41 (34%)
Query: 2 QQEEKKSSSSQEEDIHSTEDVLAL--PDAGNIVKSLQTTLQ 40
+Q KK +S L L D+ + +++ T++
Sbjct: 19 KQALKKLQAS-----------LKLYADDSAPAL-AIKATME 47
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.2 bits (62), Expect = 0.26
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 233 HTDERPYSCDVCNKAFRR----QDHLRDH 257
+ +RP+ C +C AF HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.4 bits (60), Expect = 0.48
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTD 235
K+ F+CR C FT N H + HTD
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTD 32
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.8 bits (61), Expect = 0.29
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
RPYSC VC K F + + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETH 22
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.34
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 195 VQKSTPVASTARP----------KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVC 244
++K PV + K C C K+ L + + ++C C
Sbjct: 9 IRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHC 68
Query: 245 NKAFRRQDHLRDH 257
K R ++ H
Sbjct: 69 GKQLRSLAGMKYH 81
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 30.0 bits (67), Expect = 0.35
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 210 QFICRFCSRHFTKSYNLLIHERT 232
C C+R+F S NL H R+
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Length = 131
Score = 29.2 bits (65), Expect = 0.65
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 205 ARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
A +K +C C + + ++ I + +H V +AF+ + + H+
Sbjct: 2 AMGQKNLLCGKCKAYACSTDDIRIIKDSHH-------IVLGEAFKERYTTKPHK 48
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral
RNA, RIG-I like receptors, antiviral ATP-binding,
helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB:
3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Length = 121
Score = 28.8 bits (64), Expect = 0.68
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
K+ +CR C + ++ + E +H V AF+ R H
Sbjct: 4 KKLLCRKCKALACYTADVRVIEESHY-------TVLGDAFKECFVSRPH 45
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_A
Length = 419
Score = 30.1 bits (67), Expect = 0.76
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 65 QAALLPPNSPAAAALNLQALESYLTLHRLSSTVNSPQRVSNSNNNNNNNTTTKTALALAD 124
QA L P +P + + +T P R N N T+ L
Sbjct: 261 QAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYT 320
Query: 125 IDALGNIEDEVPDDLLETSSPETADLNLKTSLEFPAFPGET 165
L + V + P+ + S + PGE+
Sbjct: 321 AAGLRFLNPTVFTQ--KPDFPDYLLADRGLSNDDVIAPGES 359
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 27.2 bits (60), Expect = 1.4
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 207 PKKQFICRF-CSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
C C ++ +L H + +R C+ C F + H
Sbjct: 13 SFNVIPCPNRCPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFSGEA-YESH 62
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 1.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
+ + CD+C K F+ + L+ H+
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHK 29
Score = 25.2 bits (54), Expect = 3.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 202 ASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDE 236
S+ K +C C + F L H+ HT +
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein,
beta barrel, oxidoreductase; 2.80A {Methylococcus
capsulatus} PDB: 3rgb_A
Length = 382
Score = 28.9 bits (64), Expect = 1.9
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 65 QAALLPPNSPAAAALNLQALESYLTLHRLSSTVNSPQRVSNSNNNNNNNTTTKTALALAD 124
QA + P L+ +++ +T P R N+ + L
Sbjct: 233 QAGTMRGMKP------LELPAPTVSVKVEDATYRVPGRAMRMKLTITNHGNSPIRLGEFY 286
Query: 125 IDALGNIEDEVPDDLLETSSPETADLNLKTSLEFPAFPGET 165
++ ++ +V D A+ L S P PGET
Sbjct: 287 TASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGET 327
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 28.8 bits (63), Expect = 2.2
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDE 236
F CR + HF + +H+
Sbjct: 419 FGCRDSADHFEQMAAASMHQVRSPSN 444
>2b1e_A Exocyst complex component EXO70; tethering complex,
endocytosis/exocytosis complex; 2.00A {Saccharomyces
cerevisiae} PDB: 2b7m_A 2pfv_A
Length = 564
Score = 28.2 bits (62), Expect = 2.7
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 84 LESYL-TLHRLSSTVNSPQRVSNSNNNNNNNTTTKTALALADIDALGNIEDEVPDDLLET 142
L+ Y +H+L + Q + N+ T L + + +L +
Sbjct: 38 LKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYF-ISILNS 96
Query: 143 SSPETADLNLKTSLEFPAFPGET 165
P +N+ + FP + +
Sbjct: 97 IKPFDPQINITKKMPFPYYEDQQ 119
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative
splicing, antiviral defense, ATP- binding, hydrolase,
immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Length = 145
Score = 27.4 bits (60), Expect = 2.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDH 257
K+ +CR C + ++ + E H V AF+ R H
Sbjct: 25 NKKLLCRKCKALACYTADVRVIEECHY-------TVLGDAFKECFVSRPH 67
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.0 bits (54), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 237 RPYSCDVCNKAFRRQDHLRDH 257
+PY C+ C K F + L +H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 25.8 bits (57), Expect = 4.2
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLR 255
C C I + T + C +C + R++ +R
Sbjct: 43 CLKC-----------ITQIGETSCGFFKCPLCKTSV-RKNAIR 73
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 26.9 bits (60), Expect = 8.4
Identities = 4/28 (14%), Positives = 7/28 (25%), Gaps = 2/28 (7%)
Query: 143 SSPETADLNLKT--SLEFPAFPGETSYP 168
D L SL+ ++
Sbjct: 68 LDSNCYDAVLSDVASLDQTSYAQVLMKR 95
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 25.7 bits (56), Expect = 9.7
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 13/74 (17%)
Query: 192 SKPVQKSTPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHT----------DERPYSC 241
+P S ++ ++ F C C + H + +SC
Sbjct: 34 DRPASGSPFQLFLSKVEETFQCICCQELVFRPITT---VCQHNVCKDCLDRSFRAQVFSC 90
Query: 242 DVCNKAFRRQDHLR 255
C R ++
Sbjct: 91 PACRYDLGRSYAMQ 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.123 0.337
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,456,140
Number of extensions: 187418
Number of successful extensions: 891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 385
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.8 bits)