RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6674
(258 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 53.8 bits (130), Expect = 7e-11
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 203 STARPKKQFICRFCSRHFTKSYNLLIHER-THTDERPYSCDV 243
S +P +IC+ C + F++ +L H + HT ERP+ C V
Sbjct: 1 SVGKP---YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 39.6 bits (93), Expect = 8e-06
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDH 257
+ +PY C C K F R DHL H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGH 24
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 52.4 bits (125), Expect = 3e-10
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
K + C+ C + FT H H RPY C VC K F+ + HL H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 33.1 bits (75), Expect = 0.003
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTH 233
+ C C + F ++L+ H + H
Sbjct: 30 PYGCGVCGKKFKMKHHLVGHMKIH 53
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 51.3 bits (123), Expect = 6e-10
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
R T +P+ C C+++F R DHL HR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 33.6 bits (77), Expect = 0.001
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHT 234
K F C C R F++S +L +H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHM 35
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 51.3 bits (123), Expect = 6e-10
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 211 FIC--RFCSRHFTKSYNLLIHERTHTDERPYSCD 242
F C C + F +L H + H+D R Y C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 28.5 bits (64), Expect = 0.066
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 239 YSCD--VCNKAFRRQDHLRDHR 258
+SC C K+F + HL++H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHM 23
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 50.4 bits (121), Expect = 1e-09
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDH 257
RTH+ E+PY C +C+ F + ++ H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMH 27
Score = 34.6 bits (80), Expect = 4e-04
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 209 KQFICRFCSRHFTKSYNLLIHE-RTHTDE 236
K + C C FT+S + +H + HT+
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 50.1 bits (120), Expect = 1e-09
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 231 RTHTDERPYSCDVCNKAFRRQDHLRDHR 258
RTHT E+PY+C C+K FR++ L H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHF 28
Score = 39.7 bits (93), Expect = 9e-06
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE 236
K + C C + F + L +H + + D
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDP 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 47.5 bits (113), Expect = 1e-08
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 229 HERTHTDERPYSCDVCNKAFRRQDHLRDHR 258
E + R Y CD C K+F L HR
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
Score = 36.3 bits (84), Expect = 1e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDE 236
++++ C C + F+ S +L H RTHT E
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 47.2 bits (113), Expect = 1e-08
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDHR 258
H+ E+PY C C KAF R L H+
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 40.3 bits (95), Expect = 4e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE 236
K + C C + F++S L+ H+R HT E
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTGE 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 43.1 bits (102), Expect = 5e-07
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
K+F C C + F +S +L H +TH +++
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 36.2 bits (84), Expect = 1e-04
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 237 RPYSCDVCNKAFRRQDHLRDHR 258
+ ++C C K F R DHL H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 42.6 bits (101), Expect = 7e-07
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDER 237
+ F+C C+R F + +L H R+HT+E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 39.9 bits (94), Expect = 5e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 237 RPYSCDVCNKAFRRQDHLRDHR 258
R + C+VC +AF RQ+HL+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 41.1 bits (97), Expect = 2e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDHR 258
++P+ C +C + F R DHL H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 37.6 bits (88), Expect = 3e-05
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHT 234
K F CR C R+F++S +L H RTHT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 40.9 bits (96), Expect = 3e-06
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 233 HTDERPYSCDVCNKAFRRQDHLRDHR 258
+ +RP+ C +C AF + + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
Score = 38.6 bits (90), Expect = 2e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE 236
+ F+CR C FT N H + HTD
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDT 33
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 39.2 bits (92), Expect = 1e-05
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDER 237
+ F+C + C + FT+S L H+RTHT E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 35.0 bits (81), Expect = 3e-04
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 237 RPYSCDV--CNKAFRRQDHLRDHR 258
RP+ C C K F R D L+ H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 38.8 bits (91), Expect = 1e-05
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 236 ERPYSCDV--CNKAFRRQDHLRDHR 258
+RPYSCD C+KAF R L H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK 25
Score = 35.4 bits (82), Expect = 2e-04
Identities = 6/30 (20%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDE 236
+ + C C + F ++++L+ H+++H ++
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 37.7 bits (88), Expect = 3e-05
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHT 234
+ ++C F C++ F +S NL H TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 34.6 bits (80), Expect = 4e-04
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 237 RPYSCDV--CNKAFRRQDHLRDHR 258
RPY C CNK F + +L+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHI 24
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 37.3 bits (87), Expect = 4e-05
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDE 236
K C C + +++ NL H R+HT E
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 34.2 bits (79), Expect = 7e-04
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 237 RPYSCDV--CNKAFRRQDHLRDHR 258
+P+ C C K++ R ++L+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHL 24
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 37.3 bits (86), Expect = 6e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 206 RPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
R +KQ C C + F Y+L H+ +H+ E+PYS
Sbjct: 1 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
Score = 28.9 bits (64), Expect = 0.063
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 237 RPYSCDVCNKAFRRQDHLRDHR 258
+ +C++C K FR HL H+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHK 25
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.0 bits (83), Expect = 1e-04
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+P++CD+C + F R D + H
Sbjct: 1 EKPFACDICGRKFARSDERKRH 22
Score = 28.6 bits (64), Expect = 0.058
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTH 233
+K F C C R F +S H + H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 35.4 bits (82), Expect = 3e-04
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHT 234
+ + C C R F++S +L H R HT
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
Score = 34.6 bits (80), Expect = 4e-04
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 237 RPYSCDV--CNKAFRRQDHLRDHR 258
RPY+C V C++ F R L H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHI 24
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 35.0 bits (81), Expect = 3e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 209 KQFIC--RFCSRHFTKSYNLLIHERTHTDE 236
K F C C + F+ +NL H R HT +
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 32.3 bits (74), Expect = 0.003
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 237 RPYSCDV--CNKAFRRQDHLRDH 257
+P+ C C K F +LR H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 35.1 bits (81), Expect = 4e-04
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 209 KQFICRF--CSRH---FTKSYNLLIHERTHTDE 236
K+F+C + CSR F Y L++H R HT E
Sbjct: 1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 34.9 bits (81), Expect = 4e-04
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 237 RPYSCDVCNKAFRRQDHLRDHR 258
+PY C C KAF + L +H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
Score = 34.1 bits (79), Expect = 6e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHT 234
K + C C + F+++ L+ H+R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 34.2 bits (78), Expect = 6e-04
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 236 ERPYSCDVCNKAFRRQD----HLRDH 257
E+PYSC VC F+R+D H+R H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 34.3 bits (79), Expect = 7e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 207 PKKQFICRFCSRHFTKSYNLLIHERTHTDER 237
P + + C FC R F + L H H +R
Sbjct: 2 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Score = 25.8 bits (57), Expect = 0.63
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 237 RPYSCDVCNKAFRRQD----HLRDHR 258
R Y+C C + FR H+ HR
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHR 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 34.5 bits (79), Expect = 8e-04
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 226 LLIHERTHTDERPYSCDVC--NKAFRRQDHLRDHR 258
+ ++ + C K F+R+ ++R H
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI 40
Score = 33.0 bits (75), Expect = 0.002
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 209 KQFICRFC--SRHFTKSYNLLIHERTHTDER 237
K F C F ++ F + YN+ H +TH ++R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 32.7 bits (74), Expect = 0.002
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 238 PYSCDVCNKAFRRQDHLRDH 257
P+ C+VC K F R+D L+ H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTH 20
Score = 26.2 bits (57), Expect = 0.47
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 213 CRFCSRHFTKSYNLLIHERTHT 234
C C + F++ L H R HT
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCHT 25
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 32.9 bits (75), Expect = 0.002
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 234 TDERPYSCDV--CNKAFRRQDHLRDHR 258
+D++P+ C C + F +DHL H+
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHK 28
Score = 24.1 bits (52), Expect = 3.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHT 234
K F+C C + FT +L +H+ H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 31.4 bits (71), Expect = 0.007
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 210 QFICRFCSRHFTKSYNLLIHERTHTDER 237
++IC C K L H RTHTD R
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 29.7 bits (67), Expect = 0.065
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 210 QFICRFCSRHFTKSYNLLIHERT 232
C C+R+F S NL H R+
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRS 37
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 28.6 bits (64), Expect = 0.068
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 238 PYSCDVCNKAFRRQDHLRDH 257
PY C +CN+AF R+D L H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRH 20
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 28.0 bits (62), Expect = 0.097
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDE 236
K++IC F C + K++ L H HT E
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 28.1 bits (62), Expect = 0.099
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDER 237
C C + F Y L +H R HT E+
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 27.4 bits (61), Expect = 0.22
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCN 245
KK +IC C Y T DE P C VC
Sbjct: 3 KKVYICPICG------Y-------TAVDEAPEYCPVCG 27
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 27.5 bits (61), Expect = 0.27
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 206 RPKKQFICRFCSRHFTKSYNLLIHERTHT 234
+ + ++C C F ++ +H+ H+
Sbjct: 26 KDQHVYVCAVCQNVFCVDCDVFVHDSLHS 54
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.0 bits (59), Expect = 0.36
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 234 TDERPYSCDVCNKAFRRQDHLRDHR 258
T +PY C++C K F +D H
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHV 25
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 26.2 bits (57), Expect = 0.43
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 236 ERPYSCDVCNKAFRRQDHLRDH 257
E+ ++C VC + FRR+ LR H
Sbjct: 2 EQVFTCSVCQETFRRRMELRLH 23
Score = 23.5 bits (50), Expect = 3.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 211 FICRFCSRHFTKSYNLLIHERTHTDE 236
F C C F + L +H +HT E
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSHTGE 30
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 28.1 bits (61), Expect = 0.49
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 203 STARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKA 247
S Q + + L I + Y C+V K
Sbjct: 51 SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKD 95
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 25.1 bits (54), Expect = 1.1
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 211 FICRF--CSRHFTKSYNLLIHERTHT 234
++C F C + F K L +H+ +HT
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 25.0 bits (54), Expect = 1.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
Y C C K F R+D++ H
Sbjct: 2 YPCPFCFKEFTRKDNMTAH 20
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.0 bits (54), Expect = 1.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 209 KQFICRFCSRHFTKSYNLLIHERTHTDE 236
+ +C C + F +S L H+ HT E
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHTGE 28
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.3 bits (55), Expect = 1.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 239 YSCDVCNKAFRRQDHLRDH 257
C +C K F + LR H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
>d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp.,
strain TB-90 [TaxId: 1409]}
Length = 152
Score = 26.8 bits (59), Expect = 1.9
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 135 VPDDLLETSSPETADLNLKTSLEFPAFPGETSYPSLLLYQPVSTASTPTKTIVTDSISKP 194
+P+ +N+K S+ TS+ T + + TDS+
Sbjct: 26 IPESPFSGRDHILFGVNVKISVGGTKL--LTSF----------TKGDNSLVVATDSMKNF 73
Query: 195 VQ---KSTPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYS 240
+Q S + + F+ F K Y+ + +E P+
Sbjct: 74 IQKHLASYTGTTI----EGFLEYVA-TSFLKKYSHIEKISLIGEEIPFE 117
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 2.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 238 PYSCDVCNKAFRRQDHLRDH 257
PY C CN +F+ + +L H
Sbjct: 1 PYHCTYCNFSFKTKGNLTKH 20
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 25.8 bits (55), Expect = 2.1
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 213 CRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKA 247
+ +L+ +DE Y C A
Sbjct: 47 QEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 81
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 26.0 bits (56), Expect = 2.3
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 215 FCSRHFTKSYNLLIHERTHTDERPYSCDVCNK 246
T + +++I +DE Y C V
Sbjct: 56 RTIFDITNNLSIVILALRPSDEGTYECVVLKY 87
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 24.2 bits (52), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 209 KQFICRF--CSRHFTKSYNLLIHERTHTDE 236
K F C+ C + FT ++L H THT E
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 2.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 208 KKQFICRFCSRHFTKSYNLLIHERTHT 234
++ F C+ C S L +H R+HT
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHT 27
Score = 23.5 bits (50), Expect = 4.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 236 ERPYSCDVCNKAFRRQD----HLRDH 257
ERP+ C +C A R HLR H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 25.0 bits (53), Expect = 4.8
Identities = 7/54 (12%), Positives = 11/54 (20%)
Query: 194 PVQKSTPVASTARPKKQFICRFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKA 247
+ + NLLI + D Y C +
Sbjct: 20 SQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 73
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 24.7 bits (53), Expect = 5.9
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 215 FCSRHFTKSYNLLIHERTHTDERPYSCDVCNKA 247
R L+I + D+ Y C N+
Sbjct: 45 SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEH 77
>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 107
Score = 24.7 bits (53), Expect = 7.5
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 214 RFCSRHFTKSYNLLIHERTHTDERPYSC 241
RF + L I+ D Y C
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFC 88
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.1 bits (51), Expect = 8.1
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 194 PVQKSTPVASTARPKKQFICRFCSRHFTKSYN-LLIHERTHTDERPYSCDVCNKA 247
P + A+ ++ + LL+ D YSC +
Sbjct: 29 PGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 24.6 bits (52), Expect = 8.6
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 214 RFCSRHFTKSYNLLIHERTHTDERPYSCDVCNKA 247
F ++ + I + Y C+V K
Sbjct: 58 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.123 0.337
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 808,146
Number of extensions: 32696
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 83
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.3 bits)