BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6676
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 52/83 (62%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
EKP+KC ECGK F QS L H+ H E P+KCP C +SF+Q S+L+ H THT KPY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 86 NCAACGKVFRRNCDLRRHSLTHN 108
C CGK F R+ L RH TH
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQ 84
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F QS L H+ H E P+KCP C +SF++ +L H TH +
Sbjct: 26 THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Query: 82 IK 83
K
Sbjct: 86 KK 87
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 53/86 (61%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F + L H+ H E P+KCP C +SF+QR+NL+ H THT
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + LR H TH
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 56/94 (59%)
Query: 14 TINLAQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLK 73
+ ++AQ + EKP+ C ECGK F +S LA H+ H E P+KCP C +SF+ + +L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
H THT KPY C CGK F + +LR H TH
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 51/86 (59%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F Q L H+ H E P+ CP C +SF+Q ++L+ H THT
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F R +L H TH
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 49/86 (56%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+ C ECGK F Q L H+ H E P+KCP C +SF++ NL TH THT
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F R L H TH
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F + L H+ H E P+KCP C +SF++R L H THT
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 82 IK 83
K
Sbjct: 187 KK 188
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCA 88
F C CGK F +S TL+ H ++H + P+ C C + F+Q+S++K H HT KP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 89 ACGKVFRRNCDLRRHSLTHN 108
CGK F ++ +L HS H
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
IHS +P+ C CGK F Q + H +H E PHKC VC ++F+Q SNL TH HT
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 3 RAQHRDDMALETINLAQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILH 51
R + DM T +IH+ EKP KC CGK F QS L H H
Sbjct: 38 RFHQKSDMKKHT------FIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 21 YIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
YIHSKEKPFKC ECGKGFCQSRTLAVHK LH++ S
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
+K F C CG+ F +S L +H+ H +E P+ C +C ++F ++ +L+ H H+ KP+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 86 NCAACGKVF 94
C CGK F
Sbjct: 75 KCQECGKGF 83
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
C C R F + NL H THTD +PY C C K FRR LR H H+
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F QS +L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F +S L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F +S L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F S L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F +S L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F +S L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 27 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F +S L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHL 52
H+ EKPF C CG+ F +S H +HL
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 31 CTECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCA 88
C ECGK F +S L H+++H E P +C C + F+ NL+TH+ HT +PY C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 89 --ACGKVFRRNCDLRRHSLTH 107
C K F ++ +L+ H LTH
Sbjct: 97 FDGCNKKFAQSTNLKSHILTH 117
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLL 77
+H+ EKPF+CT CGK F L H +H + P+ CP C++ F Q +NLK+H+L
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 78 THTDIK 83
TH K
Sbjct: 116 THAKAK 121
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCA--ACGKVFRRNCDLRRHSLTH 107
H C C ++F + S LK H L HT KP+ C CGK F + +LR H H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKI---LHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKPF+C +CGK + + L H+ ++ E C VC +F +R L+ H+++H
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSL 105
T PY C++C + F + DL+ H +
Sbjct: 90 TGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 30 KCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLL---THTDIKPYN 86
+C C K F L VH H E P +CP C + + ++ NL H + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 87 CAACGKVFRRNCDLRRHSLTH 107
C+ C + FRR +LR H ++H
Sbjct: 69 CSVCQETFRRRMELRLHMVSH 89
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLL 77
A+ ++ E+ F C+ C + F + L +H + H E P+KC CS+ F Q+ +L++H++
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F Q L H +H + P +C +C R+F+Q+++L H+ THT K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 84 PYNCAACGKVF 94
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSF 66
IH+ +KPF+C C + F Q +L H H E P C +C R F
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F T H +HL +
Sbjct: 57 HTGEKPFACDICGRKFATLHTRTRHTKIHLRQ 88
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 23 HSKEKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
H+ EKP++C +C + F +S L H+ H P +C C R F++ +LKTH THT
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 81 DIKPYNC--AACGKVFRRNCDLRRHSLTH 107
KP++C +C K F R+ +L RH H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 24 SKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTH 79
S+++PF C C K + + L +H H E P++C C R F++ LK H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTH 107
T +KP+ C C + F R+ L+ H+ TH
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F Q L H +H + P +C +C R+F+Q + L H+ THT K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 84 PYNCAACGKVF 94
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSF 66
IH+ +KPF+C C + F Q L H H E P C +C R F
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F T H +HL +
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKIHLRQ 88
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
+KP+KC C F LA HK +H E P++C +C FN+ +NLKTH H+ KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
+ P+KC C SF + NL +H HT KPY C CG F R +L+ H+ H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
+H+ EKP++C CG F + L H +H E P
Sbjct: 39 VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
EKP+ C ECGK F +S L H+ +H E P+KC C ++F+Q S L H HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
E P+ C C ++F++ S L H HT KPY C CGK F +N L H H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
S +K + C +CGK F H +HL P+ C VC + F + +L H+ HT IK
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 84 PYNCAACGKVFRRNCDLRRH 103
PY C C K F RH
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 62 CSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
C +SF +S H+ H ++PY C CGK F+ L H H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLT 78
+H +P+ C CGK F L H +H P++C +C++ F R + H+ +
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
+KC ECGK F S L+ H+ H E P+KC C ++F QRS+L H HT P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVF 94
E +KC C +SF+ S+L H THT KPY C CGK F
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
H+ EKP+KC ECGK F Q L H +H P
Sbjct: 40 THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 21 YIHSKEKPFKCTECG-----KGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLK 73
+IH + K F C G + F L VH H E PHKC C +S+++ NLK
Sbjct: 27 HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 74 THLLTHTDIKPYNC--AACGKVFRRNCDLRRH 103
THL +HT KPY C C K F D +H
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 23 HSKEKPFKCTE--CGKGFCQSRTLAVHK-ILHLEESPHKC--PVCSRSFNQRSNLKTHLL 77
H+ EKP+ C C K F + A H+ H E P+ C P C++ + S+L+ H+
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 78 T 78
T
Sbjct: 152 T 152
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 31 CTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDI--KPYNCA 88
C CGK F L HK+ H E P+ CPVC F ++ + H+ +H KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 89 ACGKVFRRNCDLRRH 103
+CGK F R L H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
C +C + F +L H L+H+ KPY+C CG F+R + H +H+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%)
Query: 28 PFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
P KC CGK F + L H H P+KC C + S+L HL H+D +P+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 88 AACGKVFRRNCDLRRHSLTH 107
C R + L H +H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
PHKC VC + F+++ LKTH+ HT +KPY C C + L +H H+
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
H+ KP+KC C S +L H +H +E P KC +C + S L HL +HT
Sbjct: 31 HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
IHS E+PFKC C S L VH H +S
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLL 77
+H+ EKPF C CGK F +S L +HK H E P KC C R F S+ K H+
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 78 THTDIK 83
HT K
Sbjct: 144 VHTSDK 149
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 30 KCTECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNC 87
+C GK F L H +H E P CP C + F + NLK H THT KP+ C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 88 --AACGKVFRRNCDLRRHSLTH 107
C + F + D ++H H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
P +C +C R+F++ +L TH+ THT KP+ C CG+ F R+ + +RH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTH 75
KPF+C C + F +S L H H E P C +C R F + K H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHK 48
H+ EKPF C CG+ F +S H+
Sbjct: 26 HTGEKPFACDICGRKFARSDERKRHR 51
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 10 MALETINLAQGYIHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFN 67
M +N Y+ K +P+ C C + F +S L H +H + P +C +C R+F+
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 68 QRSNLKTHLLTHT 80
+ +L TH+ THT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 56 PHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
P+ CPV C R F++ L H+ HT KP+ C C + F R+ L H TH
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
E+PF C CGK + + L+ H+ HL P CP C + F +S + HL H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
E P C C +++ S L H H +P +C CGK FR ++ RH H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHS 104
C VC+R+F ++ +LK H +HT+ KPY C C + F R L RH+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTH 75
F C C + F + L H H E P+ C +C+R+F +R L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 23 HSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLT 78
H+ EKPF C E C KGF L H + H E C C F ++N+K H
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 79 HTDIK--PYNC--AACGKVFRRNCDLRRHSLTH 107
+IK Y C CGK F+++ L+ H +H
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCP--VCSRSFNQRSNLKTHLLTHTDI---KPYNCA 88
CGK F + L VH+ H ++ P++CP C + F+ S LK H H K +C+
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 171
Query: 89 ACGKVF 94
GK +
Sbjct: 172 FVGKTW 177
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 62 CSRSFNQRSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTH 107
C ++N+ L+ HL HT KP+ C C K F L RHSLTH
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 32 TECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
+CG + ++ L H H E P C C + F +L H LTHT K + C +
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 90 CGKVFRRNCDLR 101
G CDLR
Sbjct: 78 DG------CDLR 83
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKP+KCT C F +S L H H P +C VC+RSF++ +L H+ H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Query: 80 TD 81
+
Sbjct: 99 QN 100
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCAACG 91
C K + +S L H H E P+KC C F + L H HT KP+ C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 92 KVFRRNCDLRRHSLTHN 108
+ F R+ L H H
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 PVCSRSFNQRSNLKTHLLTHTDIKPYNCA--ACGKVFRRNCDLRRHSLTH 107
P C++ + + S+LK HL THT KPY C C F R+ +L RH H
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S EKP++C ECGK F Q +LAVH+ LH P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C +SF+QR +L H HT P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + L H H
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPFKC ECGKGF + L VH LH E P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P KC C + F++RS L H HT KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 62 CSRSFNQRSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTHN 108
C +++ + S+LK HL THT KPY+C CG F R+ +L RH H
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCAACG 91
CGK + +S L H H E P+ C C F + L H HT +P+ C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 92 KVFRRN 97
+ F R+
Sbjct: 74 RAFSRS 79
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKP+ C CG F +S L H H P +C C R+F++ +L H+ H
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 62 CSRSFNQRSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTHN 108
C +++ + S+LK HL THT KPY+C CG F R+ +L RH H
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCAACG 91
CGK + +S L H H E P+ C C F + L H HT +P+ C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 92 KVFRRN 97
+ F R+
Sbjct: 73 RAFSRS 78
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKP+ C CG F +S L H H P +C C R+F++ +L H+ H
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 60 PVCSRSFNQRSNLKTHLLTHTDIKPYNCA--ACGKVFRRNCDLRRHSLTH 107
P C +++ + S+LK H THT KP++C+ C + F R+ +L RH TH
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTH 79
CGK + +S L H H E P C C R F + L H TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F Q+ LA H+ +H E P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C ++F+Q S L H HT KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + L RH H
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIH 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
+ G +KE PFKC ECGK F S L+ H+++H E+P
Sbjct: 2 SSGSSGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTH 107
T P+ C CGK F + L +H L H
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIH 35
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
+E P KC C ++F+ ++L H L H P
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVFRRN L RH L H
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F ++ LA H+++H E P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F + S+L H L HT KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
S EKP+ C ECGK F QS L++H+ +H ES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGKGF R L H ++H E P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F R +L TH + HT KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CGK F DL H + H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHT 36
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F Q+ LA H+ +H E P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVF +N L RH H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F Q S+L H HT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPF+C ECGK F S LA H+ +H E P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P +C C +SF+ S L TH HT KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KP+ CA CGK F + L H H
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHT 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F +LA+H+ H E P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C ++F RS+L H TH+ KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CGK FR L H TH+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHS 36
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
+ G +KEKP+KC ECGK F L H+++H E
Sbjct: 2 SSGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
+E P+KC C ++F RSNL TH + HT K
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTH 107
T KPY C CGK FR +L H + H
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIH 35
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 30 KCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
+C+ CGK F + L +H H E P+KC C + Q+++L+ HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 55 SPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
S +C C + F L HL THT KPY C C + LR H
Sbjct: 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F L H+++H E P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C ++F SNL TH + HT KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK FR + +L H + H
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIH 35
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
C C + S LK H+ THTD++PY+C C F+ +L +H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHL 76
+ C ECG + L H H + P+ C C+ SF + NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C ECGK F Q L H+ +H E P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C ++F Q++NL H HT KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + +L +H H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESP 56
KP++C ECGK F Q+ LA H+ +H E P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + L RH H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P++C C ++F+Q S L H HT KP
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPFKC ECGK F Q+ L H+ +H E P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P KC C + F Q S L +H HT KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK F +N L H H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
+ G ++EKP++C+ECGK F ++ L VH+ H ES
Sbjct: 2 SSGSSGTREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
+ T KPY C+ CGK F RN L H TH+
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
+KP+KC ECGK F Q+ LA H+ +H E P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVF +N L RH H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P+KC C + F Q S+L H HT KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPFKC ECGK F Q+ LA H +H E P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P KC C ++F Q +L +HL HT KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK FR+N L H H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F Q+ L H+ +H E P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVF +N L RH H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F Q S+L H HT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
E+PFKC ECGKGF + LA H LH E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E P KC C + F +RS+L HL H+ K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHK--CPVCSRSFNQRSNLKTH 75
+ G HS EKP++C C F QS T+ +H + E+ K CP C ++S+L H
Sbjct: 5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Query: 76 L 76
L
Sbjct: 65 L 65
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLT-HTD-IKPYNCAACGKVFRRNCDLRRH 103
H E P++C +C F Q +K H+L HT+ + ++C C V R DL H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C VCS++F Q+++L H THT KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C C K F Q LA H+ H E P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C C K F + L +H TH
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHT 36
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
EKP KCTECGK FC L +H+ H+++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E P KC C ++F +S L H TH D K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPFKC CGK FC L H ++H E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P KC +C +SF RS L H + HT KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK F L RHS+ H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C++CGK F + L VH+ +H E+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C +SF ++S L H HT P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C+ CGK F + L H H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 34 CGKGFCQSRTLAVHK-ILHLEESPHKCP--VCSRSFNQRSNLKTHLLTHTDIKPYNCAAC 90
CG+ F + L HK H+ + CP C +SFN + +LK H+ H+D + Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 91 G 91
G
Sbjct: 75 G 75
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F Q+ LA H+ +H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVF +N L RH H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F Q S+L H HT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P +C C +SF QRS L +H + HT KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
+ G + EKPF+C C K F Q L H+++H E P
Sbjct: 2 SSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ T KP+ C C K FR+ L H + H
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C ECGK F Q L+ H+ H E P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C ++F+Q+S L H THT KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + L H TH
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTH 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F Q+ L H +H E P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F Q S+L H HT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVF +N L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESP 56
KP++C+ECGK F S L H I H E P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C+ CGK F + L +H +TH
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHT 36
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P++C C +SF+ L H +THT KP
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCP--VCSRSFNQRSNLKTHLLTHTDI---KPYNCA 88
CGK F + L VH+ H ++ P++CP C + F+ S LK H H K +C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 89 ACGKVF 94
GK +
Sbjct: 69 FVGKTW 74
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E+ ++C+ECGK F Q TL++H+ +H E P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F Q+ LA H+ +H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F Q S+L H HT +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVF +N L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESP 56
K F+CTECGK F + TL++H+ +H E P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPF+C ECGK F Q+ L H+ +H E P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P +C C + F Q S+L +H HT KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK F +N L H H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C ECGK F L H+ +H E P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C ++F RSNL TH HT KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY CA CGK F +L H H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C ECGK F Q+ L H+ +H E P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C ++F+Q ++L H HT KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CGK F + L +H H
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHT 36
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E+P KC ECGK F QS L H+ +H E P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E PHKC C +SF Q ++L H HT KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKCP--VCSRSFNQRSNLKTHLLTHTDI---KPYNCA 88
CGK F + L VH+ H ++ P++CP C + F+ S LK H H K +C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 89 ACGKVF 94
GK +
Sbjct: 69 FVGKTW 74
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESP 56
KP+ C ECGK F +L H+++H E P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P+ C C ++F+ S+L TH + HT KP
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTHN 108
+KPY C CGK F L H + H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHT 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPFKC ECGK + Q L H+ +H E P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P KC C +S+NQR +L H HT KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK + + L +H H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH 35
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
EKP+KC +CGKG+ + L +H+ +H+ E
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E P+KC C + +N+R NL H H K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK + R +L H H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 27 KPFKCTECGKGFCQSRTLAVH-KILHLEESPHKCPV 61
KP+ C CGKGF + L H K +H E PHKC V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC +CGKG+ L +H+ +H E P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + +N + NL H HT +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCA 88
+ C C + + +L H +H E + C C + F H + HT + Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 89 ACGKVF 94
ACGK F
Sbjct: 83 ACGKSF 88
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHL 76
IHS EK + C C K F + H+I H E ++C C +SF + +H+
Sbjct: 44 IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHI 98
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 33 ECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLLTHTDIKPYNCAAC 90
+CG + ++ L H H E P C C + F +L H LTHT K + C +
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 91 GKVFRRNCDLR 101
G CDLR
Sbjct: 70 G------CDLR 74
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 23 HSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLT 78
H+ EKPF C E C KGF L H + H E C C F ++N+K H
Sbjct: 28 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 87
Query: 79 HTDIK 83
+IK
Sbjct: 88 FHNIK 92
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 62 CSRSFNQRSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTH 107
C ++N+ L+ HL HT KP+ C C K F L RHSLTH
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.016, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S EKP+ C ECGK F L VHK +H P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 0.52, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C ++F +S L H HT +KP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F + L+ H+ +H E P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGKVFR N L RH H
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C + F S L H HT KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
+K FKC EC K F QS +L VH+ +H E P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 58 KCPVCSRSFNQRSNLKTHLLTHTDIKP 84
KC C ++F Q S+L H HT KP
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
S EKP++CT+CGK F L +H+ H ES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E P++C C ++F +S L H THT
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F L H TH
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C+ CGK F ++L+VH+ +H + P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C VC ++F+ R +L H H+ KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C+ CGK F L H H+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C ECGK F Q L H+ +H E P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C +SF Q+S+L H HT KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + L RH H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK----PYNCAACGKVFRRNCDLRRHS 104
H E P+ C C ++F Q+ L H + D + C+ CGK F R + RH+
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVH-KILH---LEESPHKCPVCSRSFNQRSNLK 73
+ G H+ EKP+ C+ C K F Q + L +H K H + C C ++F +R+ +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 74 TH 75
H
Sbjct: 65 RH 66
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 78 THTDIKPYNCAACGKVFRR 96
THT KPY C+ C K FR+
Sbjct: 9 THTGEKPYACSHCDKTFRQ 27
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPFKC ECGKGF + H+ H E P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P KC C + F S +H +H+ KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.7 bits (78), Expect = 0.022, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C +CGK F Q +L VH +H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.4 bits (67), Expect = 0.35, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C ++F+Q+ +L H+ HT P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC ECGK F + + H+ LH + P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F N +H H
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C ++F S+ H HT +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C+ CGK F + L VH+ +H E P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C +C +SF ++S L H HT KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C+ CGK F + L H H
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHT 36
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
S EKP+ CTECGK F + H+ +H ES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CGK F R H H
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C ECGK F L H+ +H E P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPYNC CGK F + L+ H H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C ++F S L+ H HT KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.029, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
S EKP+ C ECGK F L VH+ +H E
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E+ ++C+ECGK F + TL +H+ +H E P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P +C C ++FN +SNL H THT KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPF+C+EC K F L VH+ H E P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E PF C+ECGK F L +H+ +H E P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E+P C C + F ++NL H HT +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
EKP+KC++CGK F + L +H+ H E
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C+ CGK F R L H +H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E P+KC C ++F ++S L H +HT
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP +C ECGK F + L VH+ +H E+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E PH+C C +SF+ S L H HT P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C+ECGK F L +H H E P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C ++F+ +S L H+ TH+ KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C+ CGK F L H TH+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHS 36
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C +CGK F +L H+ +H + P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C C ++F+ RS+L TH HT KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F L H H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
+KC VC + F+Q S+L+TH HT KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EK +KC CGK F QS L H+ +H E P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C VC ++F RSNL H HT KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E+P+ CT CGK F L H+ +H E P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
+PY C CGK F +L +H H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPF C +CGK F L H+ +H E P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP++C CGK F + L +H H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.053, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
S +KP+ C ECGK F L +H+ +H ES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.055, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
EKP+KC ECGKG+ + L H+ +H E
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 30.4 bits (67), Expect = 0.40, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK ++R DL H H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E P+KC C + + +R +L H HT
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHT 36
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S +KP C ECGK F QS L+ H+ +H E P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KP C CGK FR++ L +H H+
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHS 34
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EK +KC ECGK F ++ L+ H+ +H E P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
K Y C CGKVF RN L +H H
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E +KC C + F++ S L H HT KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C F Q ++L+ H+L HT P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC CG F Q L H ++H P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CG F + LR H L H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHT 35
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
EKP+KC++CGK F L +H+ H E
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E P+KC C +SF +S L+ H HT
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C+ CGK F LR H H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHT 36
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.076, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILH 51
S EKP+ C++CGK F L VH+ +H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC+ECGK F + L H+ +H P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C+ CGK F R+ L H H
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC C ++F++ ++L H HT +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
+ +KPY C+ CGK FR L H TH
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHT 34
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S KP+ C+ECGK F L +H H E P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P+ C C ++F +S L H+ THT KP
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
S E P++C+ECGK F + L H+ H ES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
PY C+ CGK F R L H TH
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTH 33
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E+P++C C ++FN++ L +H TH
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHA 34
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S EKPF C+ C K F L VH+ H EE P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P C C ++F+ +S L H TH + KP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILH 51
EKP++C ECGK F L VH+ H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC VC +SF S+L H HT KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC C K F +L VH+ +H E P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E P++C C ++FN +SNL H THT
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEES 55
EKP++C EC K F L VH+ H ES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C C K F +L H TH
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C ECGK F L H+ +H ++ P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C ++F RSNL H HT KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY CA CGK F +L +H H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTH 79
HKCP C + FNQ NLK HL H
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLKIH 25
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLT--HTDIKPYNCAACGKVFRRNCDLRRH 103
E ++C VCSR + SN H +T ++K Y C C K F R ++ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 31.6 bits (70), Expect = 0.18, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 26 EKPFKCTECGKGFCQSRTLAVH-KILHLEESP 56
+KP++C ECGK F Q+ +L H + H E P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 29.6 bits (65), Expect = 0.64, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 83 KPYNCAACGKVFRRNCDLRRH 103
KPY C CGK F +N L RH
Sbjct: 11 KPYECIECGKAFIQNTSLIRH 31
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C ECGK F + L H+ +H E P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPYNC CGK FR L +H H+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C C +SF S L H H+ KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.21, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+ C CGK F S L H+ +H E P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + +L RH H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
+KPF+CT CGK F L H+ +H E
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
+ P +C C +SF + NL TH HT K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK FR +L H H
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIH 35
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E P++C ECGK F + L H+ H E P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
PY C CGK F R L H TH
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTH 35
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E+P++C C ++F+++ L +H TH KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP+KC CGK F S L H +H E P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CGK FR + L +H H+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+KC VC ++F S+L H H+ +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
EK C ECGK FC L +H+ +H+ E
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGE 38
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHK 48
E P+ C +CGK F Q +LAVH+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E+P+ C C +SF QR +L H + + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 84 PYNCAACGKVFRRNCDLRRHSLTHN 108
PY C CGKVF R L H TH+
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHS 36
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEES 55
E P++C ECGK F + L H+ H +S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 33 ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLK 73
+CG FCQ+ A HK L++ CPVC S+ Q N++
Sbjct: 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY-QPENIR 75
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EK +KC EC F Q+ +L +H+ +H+ E P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P+ C C+++F+ +S L H +HT +KP
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTHN 108
+KPY C+ C K F L H +H
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHT 36
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 28 PFKCTECGKGFCQSRTLAVHKILHLEESP 56
P+KC++C K F L VH+ +H E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P+KC C +SF+ + L H HT KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
++P++C ECGK F +L H+ H E P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
P++C C ++F +S+L H +HT KP
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.0 bits (66), Expect = 0.46, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S ++ ++C ECGK F Q +L +H+ +H P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
H CPVC SF + + HL + + C C F + L RH
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
P+KCP CS + ++NL HL HT K
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 29.6 bits (65), Expect = 0.62, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 28 PF-KCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYN 86
PF CT CG F R + + + + CP C + + + + H +P
Sbjct: 38 PFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFH------AQPVA 91
Query: 87 CAACG 91
C CG
Sbjct: 92 CPECG 96
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 29.6 bits (65), Expect = 0.62, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 28 PF-KCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYN 86
PF CT CG F R + + + + CP C + + + + H +P
Sbjct: 38 PFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFH------AQPVA 91
Query: 87 CAACG 91
C CG
Sbjct: 92 CPECG 96
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHL 52
KPF+C +C + F +S LA+H+ H+
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEES 55
KP+ C ECGK F L +H H ES
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
+KPY C CGK FR L H+ TH
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
P +C C R F++ +LKTH THT K
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KP+ C C + F R+ L+ H+ TH
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 25 KEKPFKCTECGKGFCQSRTLAVHKILHL 52
+EK +C ECG+ F Q +L H++LH+
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHM 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEES 55
EKP+ C CGK F S L H +H +E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY+C CGK F + L +H H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
E P+ C VC ++F ++L HL HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P+ C +C F LK+HL HT P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EK + C ECGK F ++ L H+ LH E P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
E+ +C++CGK F Q+ H+ +H E P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E H+C C + F Q SN H HT KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
E P++C VC ++F+ ++L H H+ KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKP++C C K F +L H+ +H E P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTH 79
E P+ CPVC F ++ + H+ +H
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY+C CG F+R + H +H+
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHD 34
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHL 52
KPF+C +C F +S LA+H+ H+
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRHM 31
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEES 55
E PFKC++C + F Q L H+ H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTH 79
E+P KC C R F QR+ L H TH
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 27 KPFKCTECGKGFCQSRTLAVH 47
KP+ C CGK F QS LA H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|B Chain B, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|C Chain C, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|D Chain D, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|E Chain E, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|F Chain F, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|G Chain G, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|H Chain H, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V94|A Chain A, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|B Chain B, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|C Chain C, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|D Chain D, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|E Chain E, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|F Chain F, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|G Chain G, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|H Chain H, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
Length = 345
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 20 GYIHSKEKPFKCTECGKG-FCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLT 78
++ + + P GKG Q T ++L++ E + + SF + N+ +HL+
Sbjct: 150 AFLAAVQDPVSFKFSGKGTLEQLHTATAFELLNVTEFDFTSSMDNASFLEFKNIVSHLIG 209
Query: 79 HTDI 82
HTD+
Sbjct: 210 HTDM 213
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIK 83
C VC+R+F ++ +LK H +HT+ K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
EKPF+C ECG F S +L H H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CG F +C L +H +H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSH 35
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
E+P+ C ECGK F + L H H E
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFRE 38
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 9 DMALETINLAQGYIHSKEKPFKC------------TECGKGFCQSRTLAVHKILHLEESP 56
D++ + Q I++ +K +C T+C FC+ + K+L+ ++ P
Sbjct: 2 DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCK---FCMLKLLNQKKGP 58
Query: 57 HKCPVCSRSFNQRS 70
+CP+C +RS
Sbjct: 59 SQCPLCKNDITKRS 72
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILH 51
S EKP+ C EC + F + L H+ +H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY+CA C + F N L +H H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHT 80
H C +C + F + LK+H L HT
Sbjct: 10 HLCDMCGKKFKSKGTLKSHKLLHT 33
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIK 83
C VC+R+F ++ LK H +HT+ K
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIK 83
C VC+R+F ++ LK H +HT+ K
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 51 HLEESPHKC-----PVCSRSFNQRSNLKTHLLTHTD 81
+++E P K P C+++F +R N+++H+ TH +
Sbjct: 10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKP 84
H+C C R F +S+L H HT KP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESP 56
K +C ECG+GF L H+ +H E P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 87 CAACGKVFRRNCDLRRHSLTHN 108
C CGK+FR L RH L+H+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHS 36
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKPYNCA 88
C +C + F +L H L+H+ KPY+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEE 54
+KP++C EC K F Q L HK +H E
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGE 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 55 SPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
P KC C + F NLK HL H+ K
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 28 PFKCTECGKGFCQSRTLAVHKILHLEE 54
P KC ECGK F S L H +H E
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
S EK +C CGK F L +H+ +H ES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
+PY+C C K F RN DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 57 HKCPVCSRSFNQRSNLKTHL--------LTHTDIKPYN 86
H+C C+R F +NLKTH L ++PY+
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYS 88
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTHN 108
+KPY C CG+ F RH TH+
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHD 27
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
P +C +C ++F Q S+L H+ HT K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
KP +C CGK F Q+ +L H H E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 85 YNCAACGKVFRRNCDLRRHSLTH 107
YNC CGK F R L RH H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2,
Nmr, 20 Structures
Length = 38
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 24 SKEKPFKCTE--CGKGFCQSRTLAVHKILH 51
S +KPF CT CG+ F LAVHK H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
++ ++C ACGK+ RNC ++ L +
Sbjct: 389 LRRHHCHACGKIVCRNCSRNKYPLKY 414
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESP 56
S EK +C+EC K F L +H+ +H E+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTD 81
P+ C VC + F+ + ++TH HT
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTHN 108
+P+ C + CGK F R+ +L+RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLT 78
++C C + F SNLKTH+ T
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKT 24
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
P KC +C + +SNLK H+ H+ K
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILH 51
+ G KEK FKC +C K F S+ L H+ +H
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>pdb|3J21|JJ Chain j, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 94
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLE 53
F+CTECGK + R V K +E
Sbjct: 69 FRCTECGKAHTRGRGFRVKKFELVE 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.131 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,474,425
Number of Sequences: 62578
Number of extensions: 113616
Number of successful extensions: 991
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 536
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)