RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6676
(144 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 105 bits (266), Expect = 5e-31
Identities = 27/85 (31%), Positives = 36/85 (42%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDI 82
P KC CGK F + L H H P+KC C + S+L HL H+D
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
+P+ C C R + L H +H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 87.9 bits (219), Expect = 5e-24
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ KP+KC C S +L H +H +E P KC +C + S L HL +HT
Sbjct: 30 CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Query: 82 IKPYNCA 88
+
Sbjct: 90 DSGPSSG 96
Score = 40.5 bits (96), Expect = 1e-05
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ P+ C CGK F R L+ H H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH 31
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 104 bits (262), Expect = 2e-30
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+K F C CG+ F +S L +H+ H +E P+ C +C ++F ++ +L+ H H+
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C CGK F ++ L H H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 86.3 bits (215), Expect = 3e-23
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ E+P+ C C K F + L H+ +H +E P KC C + F Q L H H
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Query: 82 IKPYNCAA 89
A+
Sbjct: 99 TSSPTAAS 106
Score = 74.0 bits (183), Expect = 2e-18
Identities = 24/67 (35%), Positives = 30/67 (44%)
Query: 41 SRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDL 100
S + ++ + C C R F + NL H THTD +PY C C K FRR L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 101 RRHSLTH 107
R H H
Sbjct: 62 RDHRYIH 68
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 106 bits (268), Expect = 3e-30
Identities = 42/86 (48%), Positives = 49/86 (56%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+ C ECGK F Q L H+ H E P+KCP C +SF++ NL TH THT
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F R L H TH
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 106 bits (267), Expect = 4e-30
Identities = 40/86 (46%), Positives = 51/86 (59%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+ EKP+ C ECGK F +S LA H+ H E P+KCP C +SF+ + +L H THT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + +LR H TH
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 105 bits (266), Expect = 7e-30
Identities = 43/86 (50%), Positives = 53/86 (61%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F + L H+ H E P+KCP C +SF+QR+NL+ H THT
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F + LR H TH
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 105 bits (265), Expect = 9e-30
Identities = 41/86 (47%), Positives = 51/86 (59%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F Q L H+ H E P+ CP C +SF+Q ++L+ H THT
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F R +L H TH
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 78.6 bits (195), Expect = 3e-19
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H+ EKP+KC ECGK F + L H+ H E P+KCP C +SF++R L H THT
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 82 IKP 84
K
Sbjct: 187 KKT 189
Score = 77.9 bits (193), Expect = 4e-19
Identities = 28/70 (40%), Positives = 34/70 (48%)
Query: 38 FCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRN 97
S + L E P+ CP C +SF++ +L H THT KPY C CGK F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 98 CDLRRHSLTH 107
DL RH TH
Sbjct: 63 KDLTRHQRTH 72
Score = 52.4 bits (127), Expect = 2e-09
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 65 SFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
S S+ KPY C CGK F R+ L H TH
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 101 bits (253), Expect = 4e-29
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
E+P+ C C + F QS +L H +H + P +C +C R+F++ +L TH+ THT K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CG+ F R+ + +RH+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.6 bits (200), Expect = 4e-21
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
IH+ +KPF+C C + F +S L H H E P C +C R F + K H H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 46.3 bits (111), Expect = 8e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ EKPF C CG+ F +S H +HL +
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 101 bits (253), Expect = 4e-29
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT-- 80
S C CGK F L HK+ H E P+ CPVC F ++ + H+ +H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 81 DIKPYNCAACGKVFRRNCDLRRH 103
KPY C +CGK F R L H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGH 84
Score = 72.5 bits (179), Expect = 6e-18
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES--PHKCPVCSRSFNQRSNLKTHL-LT 78
HS EKP+ C CG F + ++ H H P+ C C + F++ +L H+
Sbjct: 29 SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQV 88
Query: 79 HT 80
H+
Sbjct: 89 HS 90
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 99.5 bits (249), Expect = 3e-28
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTH---LLTH 79
S +C C K F L VH H E P +CP C + + ++ NL H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + C+ C + FRR +LR H ++H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 99.1 bits (248), Expect = 6e-28
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVH---KILHLEESPHKCPVCSRSFNQRSNLKTHLLT 78
H+ EKPF+C +CGK + + L H ++ E C VC +F +R L+ H+++
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Query: 79 HTDIKPYNCAACGKVFRRNCDLRRH 103
HT PY C++C + F + DL+ H
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 72.9 bits (180), Expect = 8e-18
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLL-THT 80
++ E+ F C+ C + F + L +H + H E P+KC CS+ F Q+ +L++H++ H+
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 98.4 bits (246), Expect = 1e-27
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTH 79
H + C ECGK F +S L H+++H E P +C C + F+ NL+TH+ H
Sbjct: 29 THG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Query: 80 TDIKPYNCAA--CGKVFRRNCDLRRHSLTH 107
T +PY C C K F ++ +L+ H LTH
Sbjct: 88 TGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 91.0 bits (227), Expect = 8e-25
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 25 KEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDI 82
+ + C C K F + + H H H C C ++F + S LK H L HT
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 83 KPYNCAA--CGKVFRRNCDLRRHSLTH 107
KP+ C CGK F + +LR H H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 79.1 bits (196), Expect = 4e-20
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLL 77
+H+ EKPF+CT CGK F L H +H + P+ CP C++ F Q +NLK+H+L
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 78 THTDIKPY 85
TH K
Sbjct: 116 THAKAKNN 123
Score = 65.2 bits (160), Expect = 9e-15
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 52 LEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+E CP C++ F S ++ HL TH + + CA CGK F + L+RH L H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVH 57
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 22 IHSKEKPFKC--TECGKGFCQSRTLAVHKILHLEESPHK 58
IH+ ++P+ C C K F QS L H + H + ++
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 97.6 bits (244), Expect = 2e-27
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKP++C +C + F +S L H+ H P +C C R F++ +LKTH TH
Sbjct: 30 KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Query: 80 TDIKPYNCAA--CGKVFRRNCDLRRHSLTH 107
T KP++C C K F R+ +L RH H
Sbjct: 90 TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 93.4 bits (233), Expect = 9e-26
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 26 EKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTD 81
++PF C C K + + L +H H E P++C C R F++ LK H HT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
+KP+ C C + F R+ L+ H+ TH
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTH 89
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 96.4 bits (241), Expect = 4e-27
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
S +K + C +CGK F H +HL P+ C VC + F + +L H+ HT
Sbjct: 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 82 IKPYNCAACGKVFRRNCDLRRH 103
IKPY C C K F RH
Sbjct: 63 IKPYECNICAKRFMWRDSFHRH 84
Score = 89.8 bits (224), Expect = 1e-24
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+H +P+ C CGK F L H +H P++C +C++ F R + H +
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSC 88
Query: 82 IKPYNCAACGKVFRRNCDLR 101
K Y A +
Sbjct: 89 TKSYEAAKAEQNTTEASGPS 108
Score = 60.5 bits (148), Expect = 4e-13
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKT 74
IH+ KP++C C K F + H+ + ++ ++ + S +
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 95.6 bits (239), Expect = 5e-27
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYN 86
KPF+C C + F +S L H H E P C +C R F + K H I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 87 CAACGKVFRRNCDLRRH 103
++ +N L
Sbjct: 61 EDKVEELLSKNYHLENE 77
Score = 72.1 bits (178), Expect = 7e-18
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLL---T 78
H+ EKPF C CG+ F +S H+ + P ++ +L+ +
Sbjct: 25 THTGEKPFACDICGRKFARSDERKRHRDIQHIL-PILEDKVEELLSKNYHLENEVARLKK 83
Query: 79 HT 80
Sbjct: 84 LV 85
Score = 35.9 bits (84), Expect = 5e-04
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
+KP+ C C + F R+ L H TH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTH 26
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 91.3 bits (228), Expect = 2e-25
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCA 88
F C CGK F +S TL+ H ++H + P+ C C + F+Q+S++K H HT KP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 89 ACGKVFRRNCDLRRHSLTH 107
CGK F ++ +L HS H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 79.4 bits (197), Expect = 8e-21
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
IHS +P+ C CGK F Q + H +H E PHKC VC ++F+Q SNL TH HT
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 92.7 bits (231), Expect = 1e-24
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 22 IHSKEKPFKC--TECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLL 77
+ K + C +CG + ++ L H H E P C C + F +L H L
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Query: 78 THTDIKPYNC--AACGKVFRRNCDLRRHSLTH 107
THT K + C C F ++++H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 89.6 bits (223), Expect = 2e-23
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLL 77
H+ EKPF C E C KGF L H + H E C C F ++N+K H
Sbjct: 36 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 78 THTDIK--PYNCAA--CGKVFRRNCDLRRHSLTH 107
+IK Y C CGK F+++ L+ H +H
Sbjct: 96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 78.4 bits (194), Expect = 3e-19
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 22 IHSKEK--PFKCT--ECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTH 75
K + C CGK F + L VH+ H ++ P++C C + F+ S LK H
Sbjct: 96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Query: 76 LLTHTDIKPYNCAACGKVFRRNCDLRRHSLT 106
H +C V + +H
Sbjct: 156 EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Score = 66.5 bits (163), Expect = 9e-15
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 47 HKILHLEESPHKC--PVCSRSFNQRSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRR 102
K L + + C C ++N+ L+ HL HT KP+ C C K F L R
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 103 HSLTH 107
HSLTH
Sbjct: 63 HSLTH 67
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 90.7 bits (226), Expect = 2e-24
Identities = 37/96 (38%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 22 IHSKEKPFKCTECG-----KGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKT 74
IH + K F C G + F L VH H E PHKC C +S+++ NLKT
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 75 HLLTHTDIKPYNC--AACGKVFRRNCDLRRHSL-TH 107
HL +HT KPY C C K F D +H TH
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 89.6 bits (223), Expect = 6e-24
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLL 77
H+ EKP KCT C K + + L H H E P+ C CS++F+ S+ H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 78 -THTDIKPYNCAA--CGKVFRRNCDLRRHSLTH 107
TH++ KPY C C K + LR+H T
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 86.1 bits (214), Expect = 1e-22
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 26 EKPFKCTECGKGFCQSRTLAVH---KILHLEESPHKCPVC-----SRSFNQRSNLKTHLL 77
E + C + F L H + +H E C R F + L H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 78 THTDIKPYNCAA--CGKVFRRNCDLRRHSLTH 107
HT KP+ C C K + R +L+ H +H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 64.5 bits (158), Expect = 3e-14
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKI-LHLEESPHKCPV--CSRSFNQRSNLKTHL 76
H+ EKP+ C C K F + A H+ H E P+ C + C++ + S+L+ H+
Sbjct: 91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Query: 77 LTHT 80
T
Sbjct: 151 KTVH 154
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 88.7 bits (221), Expect = 2e-24
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES----PHKCPVCSRSFNQRSNLKTHLL 77
H+ EKP+ C+ C K F Q + L +H + + + C C ++F +R+ + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 78 THTDIKPYNCAACGKVF 94
G
Sbjct: 69 NCAGPDGVEGENSGPSS 85
Score = 67.6 bits (166), Expect = 4e-16
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 43 TLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD----IKPYNCAACGKVFRRNC 98
+ H E P+ C C ++F Q+ L H + D + C+ CGK F R
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 99 DLRRHSLTH 107
+ RH+
Sbjct: 62 TMARHADNC 70
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 88.4 bits (220), Expect = 3e-24
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 23 HSKEKPFKCT--ECGKGFCQSRTLAVHK-ILHLEESPHKCP--VCSRSFNQRSNLKTHLL 77
S C CG+ F + L HK H+ + CP C +SFN + +LK H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 78 THTDIKPYNCAACGKVF 94
H+D + Y C G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 59.5 bits (145), Expect = 5e-13
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 51 HLEESPHKCPV--CSRSFNQRSNLKTHL-LTHTDIKPYNC--AACGKVFRRNCDLRRHSL 105
S C C R F+ R L H H K ++C ACGK F L+ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 106 TH 107
H
Sbjct: 62 LH 63
Score = 36.4 bits (85), Expect = 3e-04
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 22 IHSKEKPFKCTECGKGF 38
+HS + + C G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 85.2 bits (212), Expect = 4e-23
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+ +KP+KC C F LA HK +H E P++C +C FN+ +NLKTH H+
Sbjct: 11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Query: 82 IKPY 85
KPY
Sbjct: 71 EKPY 74
Score = 73.3 bits (181), Expect = 2e-18
Identities = 23/67 (34%), Positives = 31/67 (46%)
Query: 41 SRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDL 100
H + + P+KC C SF + NL +H HT KPY C CG F R +L
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 101 RRHSLTH 107
+ H+ H
Sbjct: 62 KTHTRIH 68
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 87.3 bits (217), Expect = 5e-23
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHK---------CPVCSRSFNQRSNL 72
I + C + F L H + P + CP +SF + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 73 KTHLLTHTDIKPYNCAA--CGKVFRRNCDLRRHSLTH 107
H+ HT KP+ C CGK+F R+ +L+ H TH
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 87.0 bits (216), Expect = 7e-23
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 22 IHSKEKPFK---------CTECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRS 70
+ P + C GK F L H +H E P CP C + F +
Sbjct: 47 MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE 106
Query: 71 NLKTHLLTHTDIKPYNCAA--CGKVFRRNCDLRRHSLTH 107
NLK H THT KP+ C C + F + D ++H H
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 77.3 bits (191), Expect = 4e-19
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLL 77
+H+ EKPF C CGK F +S L +HK H E P KC C R F S+ K H+
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 78 THTDIKPYNCAA 89
HT K +
Sbjct: 144 VHTSDKSGPSSG 155
Score = 61.5 bits (150), Expect = 4e-13
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 9/84 (10%)
Query: 33 ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY------- 85
G + K + + C R+F+ L TH+ P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 86 --NCAACGKVFRRNCDLRRHSLTH 107
C GK F+ L H H
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVH 85
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 82.9 bits (206), Expect = 3e-22
Identities = 28/64 (43%), Positives = 36/64 (56%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
IHS EKP+ C ECGK F +S L H+ +H E P+KC C ++F+Q S L H HT
Sbjct: 8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Query: 82 IKPY 85
Sbjct: 68 GPSS 71
Score = 38.6 bits (91), Expect = 4e-05
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 72 LKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
H+ KPY C CGK F R+ L +H H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH 37
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 82.5 bits (205), Expect = 5e-22
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+ + +KC ECGK F S L+ H+ H E P+KC C ++F QRS+L H HT
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Query: 82 IKPY 85
P
Sbjct: 72 SGPS 75
Score = 72.9 bits (180), Expect = 2e-18
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 40 QSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCD 99
S + + E +KC C +SF+ S+L H THT KPY C CGK F +
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 100 LRRHSLTH 107
L H H
Sbjct: 62 LIGHHRVH 69
Score = 50.9 bits (123), Expect = 8e-10
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHK 58
H+ EKP+KC ECGK F Q L H +H P
Sbjct: 40 THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 82.2 bits (204), Expect = 8e-22
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLLTHT 80
+ CGK + +S L H H E P+ C C F + L H HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 81 DIKPYNCAACGKVFRRNCDLRRHSLTH 107
+P+ C C + F R+ L H H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 65.2 bits (160), Expect = 3e-15
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKP+ C CG F +S L H H P +C C R+F++ +L H+ H
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 42.9 bits (102), Expect = 1e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHL 52
H+ +PF+C +C + F +S LA+H H
Sbjct: 59 KHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 78.3 bits (194), Expect = 2e-20
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES--PHKCPVCSRSFNQRSNLKTHLLT- 78
HS EKP++C C F QS T+ +H + E+ CP C ++S+L HL
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 79 HTDIKPY 85
H+ P
Sbjct: 69 HSYSGPS 75
Score = 73.3 bits (181), Expect = 2e-18
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 43 TLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT--DIKPYNCAACGKVFRRNCDL 100
+ H E P++C +C F Q +K H+L ++ ++C C V R DL
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 101 RRH 103
H
Sbjct: 62 GVH 64
Score = 46.7 bits (112), Expect = 3e-08
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 71 NLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + TH+ KPY C C F ++ ++ H L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 77.5 bits (192), Expect = 3e-20
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 20 GYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
G S P KC+EC L +H+ +H + P KC CS Q SNL H+
Sbjct: 1 GSSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Query: 80 TDIKPYNCA 88
+
Sbjct: 61 HGDMSGPSS 69
Score = 38.2 bits (90), Expect = 5e-05
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + P C+ C LR H H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 75.3 bits (186), Expect = 3e-19
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHK--ILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
E ++C C + + H + CP C + F ++ N+ H+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 80 TDI 82
I
Sbjct: 64 HKI 66
Score = 69.9 bits (172), Expect = 3e-17
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLT--HTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
E ++C VCSR + SN H +T ++K Y C C K F R ++ H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 39.5 bits (93), Expect = 2e-05
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
T Y C C +V+ + RH +T
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 76.1 bits (188), Expect = 3e-19
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 23 HSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLLT 78
K + C C K + +S L H H E P+KC C F + L H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 79 HTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
HT KP+ C C + F R+ L H H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 66.9 bits (164), Expect = 1e-15
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
H+ EKP+KCT C F +S L H H P +C VC+RSF++ +L H+ H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Query: 80 TD 81
+
Sbjct: 99 QN 100
Score = 34.5 bits (80), Expect = 0.003
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 65 SFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
S H P C KV+ ++ L+ H TH
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH 40
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 74.7 bits (184), Expect = 6e-19
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLE---ESPHKCPVCSRSFNQRSNLKTHLLT- 78
S +C CG Q +L H+ H E C C + F + ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 79 HTDIKPYNCAACGKVF 94
H + + G
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 70.1 bits (172), Expect = 3e-17
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDI---KPYNCAACGKVFRRNCDLRRHSLTH 107
S +C +C + Q+++L H H + + C CGK F + + H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 37.0 bits (86), Expect = 2e-04
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 79 HTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ C CG R+ L H H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH 30
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 67.3 bits (165), Expect = 5e-16
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 29 FKCT--ECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLLTHTDIKP 84
+ C CGK F + L VH+ H ++ P++C C + F+ S LK H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 85 YNCAACGKVFRRNCDLRRH 103
+C V + +H
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 54.5 bits (132), Expect = 4e-11
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTH 75
H+++ P++C C K F L H+ +H K CS + H
Sbjct: 25 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
Score = 54.2 bits (131), Expect = 5e-11
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 57 HKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTH 107
+ C C ++F + + LK H +HT PY C C K F L+RH H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 65.2 bits (160), Expect = 2e-15
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLL-THT 80
+ F C C + F + L H H E P+ C +C+R+F +R L H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 61.7 bits (151), Expect = 3e-14
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHS 104
C VC+R+F ++ +LK H +HT+ KPY C C + F R L RH+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 44.8 bits (107), Expect = 1e-07
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHK 48
H+ EKP+ C C + F + L H
Sbjct: 24 SHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 35.9 bits (84), Expect = 3e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
+ + C C + F R L+RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 63.0 bits (154), Expect = 1e-14
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVH-KILHLEESPHKCPVCSRSFNQ 68
S KP+ C CGKGF + L H K +H E PHKC V +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 38.3 bits (90), Expect = 4e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
+ + + KPY C +CGK F R L H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.9 bits (151), Expect = 5e-14
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
+ K +P+ C C + F +S L H +H + P +C +C R+F++ +L TH+ TH
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Query: 80 T 80
T
Sbjct: 73 T 73
Score = 58.1 bits (141), Expect = 1e-12
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 41 SRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNC 98
L + + P+ CPV C R F++ L H+ HT KP+ C C + F R+
Sbjct: 6 MNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 99 DLRRHSLTH 107
L H TH
Sbjct: 64 HLTTHIRTH 72
Score = 37.7 bits (88), Expect = 8e-05
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 66 FNQRSNLKTHLLTHTDIKPYNCA--ACGKVFRRNCDLRRHSLTH 107
+ +NL +++ +PY C +C + F R+ +L RH H
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIH 44
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 58.2 bits (141), Expect = 1e-12
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 41 SRTLAVHKILHLEESPHKCPV--CSRSFNQRSNLKTHLLTHTDIKPYNCA--ACGKVFRR 96
S + +I H C C +++ + S+LK H THT KP++C+ C + F R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 97 NCDLRRHSLTH 107
+ +L RH TH
Sbjct: 62 SDELSRHRRTH 72
Score = 47.0 bits (112), Expect = 2e-08
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 23 HSKEKPFKCT--ECGKGFCQSRTLAVHKILHLEESPHKC--PVCSRSFNQRSNLKTHLLT 78
S+ + C+ CGK + +S L H H E P C C R F + L H T
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 79 H 79
H
Sbjct: 72 H 72
Score = 30.0 bits (68), Expect = 0.064
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 22 IHSKEKPFKCT--ECGKGFCQSRTLAVHKILH 51
H+ EKPF C+ C + F +S L+ H+ H
Sbjct: 41 THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 58.6 bits (141), Expect = 3e-12
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVH--KILHLEESPHKCPVC---SRSFNQRSNLKTHL 76
I + F+C +C + L VH + H + H+ S ++ +L
Sbjct: 13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 77 LTHTDIKPYNCAACGKVFRRNCDLRRH 103
K C CG F DL H
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 39.7 bits (92), Expect = 4e-05
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 21 YIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHL 76
Y + + R+L + + KC C SF +L H+
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 36.7 bits (84), Expect = 5e-04
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 67 NQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
+ S+ K + T + C C + +L H
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 5e-12
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPFKC CGK FC L H ++H E P
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-11
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P KC +C +SF RS L H + HT KP ++
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 40.9 bits (97), Expect = 3e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CGK F L RHS+ H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 56.9 bits (137), Expect = 8e-12
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVH-KILHLEESPHK--------CPVCSRSFNQRSNL 72
I + C + F L H + H+ CP +SF + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 73 KTHLLTHTDIKPYNCAA 89
H+ HT K +
Sbjct: 79 VNHIRVHTGEKSGPSSG 95
Score = 42.3 bits (99), Expect = 3e-06
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 50 LHLEESPHKCPVCSRSFNQRSNLKTHLL-THTDIKPY--------NCAACGKVFRRNCDL 100
+ + C R+F+ L TH+ H C GK F+ L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 101 RRHSLTH 107
H H
Sbjct: 79 VNHIRVH 85
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 9e-12
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+KC+ECGK F + L H+ +H P
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 48.3 bits (116), Expect = 5e-09
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C ++F++ ++L H HT +P
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 39.0 bits (92), Expect = 1e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C+ CGK F R+ L H H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 9e-12
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F L H+++H E P
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C ++F SNL TH + HT KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 4e-06
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK FR + +L H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+KC +CGKG+ + L +H+ +H+ E
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 50.6 bits (122), Expect = 6e-10
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C + +N+R NL H H K
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 40.6 bits (96), Expect = 5e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C CGK + R +L H H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-11
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F + L+ H+ +H E P
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 3e-06
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVFR N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 24.0 bits (53), Expect = 5.1
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 22 IHSKEKPFKCTE 33
IH+ EKP +
Sbjct: 34 IHTGEKPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+KC ECGKG+ + L H+ +H E
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 42.1 bits (100), Expect = 9e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C CGK ++R DL H H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-11
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC +CGKG+ L +H+ +H E P
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 51.0 bits (123), Expect = 4e-10
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C + +N + NL H HT +P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 38.3 bits (90), Expect = 3e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK + +L H H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-11
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ +KP+KC ECGK F Q+ LA H+ +H E P
Sbjct: 6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-09
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
+ P+KC C + F Q S+L H HT KP ++
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 8e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVF +N L RH H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-11
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+KC ECGK F Q+ L H +H E P
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-09
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C + F Q S+L H HT KP
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C CGKVF +N L H H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 24.4 bits (54), Expect = 3.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 22 IHSKEKPFKCTE 33
IH+ EKP +
Sbjct: 34 IHTGEKPSGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ KP+ C ECGK F +L H+++H E P
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 8e-09
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
P+ C C ++F+ S+L TH + HT KP
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T +KPY C CGK F L H + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-11
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F ++ LA H+++H E P
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C + F + S+L H L HT KP
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 40.5 bits (96), Expect = 5e-06
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVFRRN L RH L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGKGF R L H ++H E P
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 2e-09
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+KC C + F R +L TH + HT KP ++
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F DL H + H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC CGK F S L H +H E P
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.9 bits (115), Expect = 6e-09
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+KC VC ++F S+L H H+ +P ++
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 37.9 bits (89), Expect = 5e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ T KPY C CGK FR + L +H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ +K FKC EC K F QS +L VH+ +H E P
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 5e-09
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
+ KC C ++F Q S+L H HT KP ++
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 38.6 bits (91), Expect = 2e-05
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + K + C C K F ++ L H H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 3e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F Q+ LA H+ +H E P
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+KC C + F Q S+L H HT KP ++
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 6e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVF +N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-11
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPFKC ECGK + Q L H+ +H E P
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P KC C +S+NQR +L H HT KP
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CGK + + L +H H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-11
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
EKP++C+ECGK F S L H I H E P
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + KPY C+ CGK F + L +H +TH
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 3e-11
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKPFKC ECGK F Q+ LA H +H E P
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 3e-09
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P KC C ++F Q +L +HL HT KP ++
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 7e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KP+ C CGK FR+N L H H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ KP++C ECGK F Q+ LA H+ +H E P
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F + L RH H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.6 bits (130), Expect = 3e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F Q+ L H+ +H E P
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 40.5 bits (96), Expect = 4e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVF +N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-11
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+ C ECGK F Q L H+ +H E P
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C C +SF Q+S+L H HT KP
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F + L RH H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 24.0 bits (53), Expect = 6.2
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 22 IHSKEKPFKCTE 33
IH+ EKP +
Sbjct: 34 IHTGEKPSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC++CGK F L +H+ H E
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 47.9 bits (115), Expect = 5e-09
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C +SF +S L+ H HT +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C+ CGK F LR H H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 53.7 bits (130), Expect = 4e-11
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP++C ECGK F L VH+ H S
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 44.8 bits (107), Expect = 8e-08
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C C ++F +S L H TH + +
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.8 bits (94), Expect = 9e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C CGK F L H TH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-11
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S E+PFKC ECGKGF + LA H LH E
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 39.1 bits (92), Expect = 2e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + +P+ C CGK F R L H H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F Q+ LA H+ +H P
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 40.2 bits (95), Expect = 5e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVF +N L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPFKC ECGKGF + L VH LH E P
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CGK F R L H H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+ C CGK F S L H +H +E+
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 47.9 bits (115), Expect = 5e-09
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+ C VC ++F ++L HL HT ++
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 39.4 bits (93), Expect = 1e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ T KPY+C CGK F + L +H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKPFKC ECGK F Q+ L H+ +H E P
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P KC C + F Q S L +H HT KP ++
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 4e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KP+ C CGK F +N L H H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EK +KC ECGK F ++ L+ H+ +H E P
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E +KC C + F++ S L H HT KP
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 1e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T K Y C CGKVF RN L +H H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F Q+ LA H+ +H P
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 46.7 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C + F Q S+L H HT KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 40.2 bits (95), Expect = 6e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGKVF +N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F Q+ LA H+ +H E P
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C ++F+Q S L H HT KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 8e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F + L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+ C CGK F S L H+ +H E P
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-08
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C C ++F + L H HT KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 7e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C CGK F + +L RH H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+ C ECGK F Q L+ H+ H E P
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 46 VHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C C ++F+Q+S L H THT KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 5e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C CGK F + L H TH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 23.6 bits (52), Expect = 6.9
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 22 IHSKEKPFKCTE 33
H+ EKP +
Sbjct: 34 THTGEKPSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC C K F +L VH+ +H E P
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC VC +SF S+L H HT KP
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 8e-06
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C C K FR L H H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 24.4 bits (54), Expect = 3.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 22 IHSKEKPFKCTE 33
IH+ EKP +
Sbjct: 34 IHTGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
+ E +KC VC + F+Q S+L+TH HT KP ++
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 6e-11
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
EK +KC CGK F QS L H+ +H E P
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + K Y C CGK F ++ L+ H H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 6e-11
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC++CGK F + L +H+ H E
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 47.5 bits (114), Expect = 9e-09
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+KC C ++F ++S L H +HT + ++
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 40.2 bits (95), Expect = 6e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C+ CGK F R L H +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F +LA+H+ H E P
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+KC C ++F RS+L H TH+ KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 39.1 bits (92), Expect = 2e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK FR L H TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 6e-11
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ E+P KC ECGK F QS L H+ +H E P
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-08
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E PHKC C +SF Q ++L H HT KP ++
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 39.0 bits (92), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T +P+ C CGK F ++ L +H H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKPF+C ECGK F Q+ L H+ +H E P
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P +C C + F Q S+L +H HT KP ++
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 9e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KP+ C CGK F +N L H H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 6e-11
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPF+C+EC K F L VH+ H E P
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 8e-09
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P +C C ++FN +SNL H THT KP ++
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 39.0 bits (92), Expect = 2e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C+ C K F +L H TH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+ C ECGK F L H+ +H E P
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+ C C ++F S L+ H HT KP ++
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 4e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPYNC CGK F + L+ H H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 53.9 bits (129), Expect = 7e-11
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
IH ++ KC++CG F + TL+ K C C + Q + L +
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEGNESG 64
Query: 82 IKPY 85
K
Sbjct: 65 KKTS 68
Score = 47.0 bits (111), Expect = 3e-08
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 41 SRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDL 100
S + + +HL + KC C F +RS L K C C K + L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 101 RRHSLTHNLGSATSTSSG 118
+ + + SSG
Sbjct: 56 NKDEGNESGKKTSGPSSG 73
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 52.9 bits (128), Expect = 7e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ +KPF+CT CGK F L H+ +H E
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CGK FR +L H H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.0 bits (128), Expect = 7e-11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EK C ECGK FC L +H+ +H+ E
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 36.8 bits (86), Expect = 1e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + K + C CGK F LR H H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 8e-11
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C+ CGK F + L VH+ +H E P
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 9e-09
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P++C +C +SF ++S L H HT KP ++
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 37.9 bits (89), Expect = 4e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C+ CGK F + L H H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 9e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C ECGK F Q L H+ +H E P
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C C ++F Q++NL H HT KP
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F + +L +H H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 9e-11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C EC K F L VH+ H ES
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 49.4 bits (119), Expect = 2e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C C ++FN +SNL H THT +
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 39.8 bits (94), Expect = 9e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C C K F +L H TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 9e-11
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ K F+CTECGK F + TL++H+ +H E P
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-08
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
+C C ++F ++S L H HT KP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 1e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T K + C CGK F R L H H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 52.6 bits (127), Expect = 9e-11
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+ C ECGK F + L H+ +H E P
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 45.3 bits (108), Expect = 6e-08
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C C +SF S L H H+ KP
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 6e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPYNC CGK FR L +H H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 24.5 bits (54), Expect = 3.6
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 22 IHSKEKPFKCTE 33
+HS EKP +
Sbjct: 34 VHSGEKPSGPSS 45
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 9e-11
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ KP+ C ECGK F L +H H ES
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.9 bits (110), Expect = 3e-08
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
P+ C C ++F +S L H THT +
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.2 bits (95), Expect = 5e-06
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T +KPY C CGK FR L H+ TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-11
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ E+ ++C+ECGK F Q TL++H+ +H E P
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-08
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E ++C C ++F Q+S L H H KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T + Y C+ CGK F + L H H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.6 bits (127), Expect = 1e-10
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+KC ECGK F + + H+ LH + P
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 48.0 bits (115), Expect = 7e-09
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P+KC C ++F S+ H HT +P ++
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 39.9 bits (94), Expect = 9e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F N +H H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-10
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C++CGK F + L VH+ +H E+P
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 46.8 bits (112), Expect = 2e-08
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P++C C +SF ++S L H HT P ++
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 38.7 bits (91), Expect = 2e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C+ CGK F + L H H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 1e-10
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ G + E P++C ECGK F + L H+ H +S
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T PY C CGKVF R L H TH
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.6 bits (127), Expect = 1e-10
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKPFKC ECGKGF + H+ H E P
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 42.2 bits (100), Expect = 1e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KP+ C CGK F N H +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-10
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C ECGK F L H+ +H E P
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C C ++F RSNL TH HT KP
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 6e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY CA CGK F +L H H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C C K F Q LA H+ H E P
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-09
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C VCS++F Q+++L H THT KP
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 8e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C C K F + L +H TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 23.6 bits (52), Expect = 6.6
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 22 IHSKEKPFKCTE 33
H+ EKP +
Sbjct: 34 THTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 52.5 bits (127), Expect = 1e-10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C ECGK F Q+ L H+ +H E P
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-08
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P++C C ++F+Q ++L H HT KP ++
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 37.9 bits (89), Expect = 4e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F + L +H H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 52.1 bits (126), Expect = 1e-10
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S E P++C+ECGK F + L H+ H ES
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.5 bits (88), Expect = 6e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ PY C+ CGK F R L H TH
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ E PF C+ECGK F L +H+ +H E P
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E+P C C + F ++NL H HT +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.2 bits (95), Expect = 6e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T P+ C+ CGKVF +L H H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+ C+ECGK F L +H H E P
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 39.1 bits (92), Expect = 2e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + KPY C+ CGK F L H TH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-10
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C+ CGK F ++L+VH+ +H + P
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 46.7 bits (112), Expect = 2e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C VC ++F+ R +L H H+ KP
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 37.5 bits (88), Expect = 6e-05
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ T KPY C+ CGK F L H H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 2e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ G S +KP++C EC K F Q L HK +H E
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 40.2 bits (95), Expect = 5e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + KPY C C K F + L +H H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 23.3 bits (51), Expect = 9.3
Identities = 2/12 (16%), Positives = 6/12 (50%)
Query: 22 IHSKEKPFKCTE 33
+H+ E+ +
Sbjct: 34 VHTGERSSGPSS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 52.2 bits (126), Expect = 2e-10
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKPF C+ C K F L VH+ H EE P
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ KP+ C+ C K F L H TH
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 52.1 bits (126), Expect = 2e-10
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ KP+ C++C K F L VH+ H P
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.8 bits (94), Expect = 7e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T +KPY C+ C K F L H +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 52.1 bits (126), Expect = 2e-10
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPF+C ECGK F S LA H+ +H E P
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 1e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ CA CGK F + L H H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 2e-10
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP KCTECGK FC L +H+ H+++
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP C CGK F L H TH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 2e-10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP +C ECGK F + L VH+ +H E+P
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 38.7 bits (91), Expect = 2e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CGK F N L H H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPF C +CGK F L H+ +H E P
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P C C ++F+ L H HT KP ++
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 1e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP++C CGK F + L +H H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-10
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ E+P+ CT CGK F L H+ +H E P
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C VC ++F RSNL H HT KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T +PY C CGK F +L +H H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C C K F +L H+ +H E P
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 47.5 bits (114), Expect = 9e-09
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C VC ++F+ ++L H H+ KP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 38.6 bits (91), Expect = 2e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C C K F + L +H H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 2e-10
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP++C +CGK F +L H+ +H + P
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 46.0 bits (110), Expect = 3e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P++C C ++F+ RS+L TH HT KP
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 38.3 bits (90), Expect = 3e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY C CGK F L H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ E+ ++C+ECGK F + TL +H+ +H E P
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-08
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E ++C C ++F ++S L H HT KP ++
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 38.2 bits (90), Expect = 3e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T + Y C+ CGK F R L H H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 2e-10
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ ++P++C ECGK F +L H+ H E P
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-08
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
+ P++C C ++F +S+L H +HT KP
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 1e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T +PY C CGK F+ L H +H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 23.7 bits (52), Expect = 7.6
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 22 IHSKEKPFKCTE 33
H+ EKP +
Sbjct: 34 SHTGEKPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ E P++C ECGK F + L H+ H E P
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 38.3 bits (90), Expect = 3e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T PY C CGK F R L H TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 52.0 bits (124), Expect = 2e-10
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
+ C ECG + L H H + P+ C C+ SF + NL H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 48.2 bits (114), Expect = 8e-09
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ C C + S LK H+ THTD++PY+C C F+ +L +H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.2 bits (75), Expect = 0.003
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
H+ +P+ CT C F L H
Sbjct: 23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 3e-10
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
E+ +C++CGK F Q+ H+ +H E P
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-09
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E H+C C + F Q SN H HT KP
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 3e-05
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + + C+ CGK F + + +H H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-10
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKP+ C ECGK F L H+ +H ++ P
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C C ++F RSNL H HT KP
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 40.6 bits (96), Expect = 5e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KPY CA CGK F +L +H H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-10
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S E+P+ C ECGK F + L H H E
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + +PY C CGK F R+ L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 23.6 bits (52), Expect = 6.6
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 22 IHSKEKPFKCT 32
H +EK +
Sbjct: 34 RHFREKSSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 3e-10
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ G EK +KC EC F Q+ +L +H+ +H+ E P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
+ E KC C F+Q S+L+ H H KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 40.6 bits (96), Expect = 5e-06
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + K + C C F + LR H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-10
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EK + C ECGK F ++ L H+ LH E P
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-08
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E + C C +SF++ L H H+ KP ++
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T K YNC CGK F R L +H H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 6e-10
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ P+KC++C K F L VH+ +H E P
Sbjct: 6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 45.2 bits (108), Expect = 6e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
+P+KC C +SF+ + L H HT KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 39.1 bits (92), Expect = 1e-05
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + PY C+ C K F L H H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.2 bits (121), Expect = 8e-10
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYN 86
E P+KC C F Q ++L+ H+L HT P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 41.4 bits (98), Expect = 2e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ KPY C CG F + LR H L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 50.3 bits (121), Expect = 9e-10
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVH-KILHLEESPHKCP 60
+ +KP++C ECGK F Q+ +L H + H E P
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 43.7 bits (104), Expect = 3e-07
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHL-LTHTDIKPYNCAA 89
+ P++C C ++F Q ++L H HT KP ++
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 39.5 bits (93), Expect = 1e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
+ + T KPY C CGK F +N L RH
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.9 bits (120), Expect = 1e-09
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S K +C ECG+GF L H+ +H E P
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-08
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
H+C C R F +S+L H HT KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-05
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + + K + C CG+ F L +H H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 48.8 bits (117), Expect = 2e-09
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHK 58
E P+ C +CGK F Q +LAVH+ + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 42.7 bits (101), Expect = 7e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
E+P+ C C +SF QR +L H + + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 33.8 bits (78), Expect = 0.001
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
+ PY C CGK F + L H + +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 48.7 bits (117), Expect = 3e-09
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPH 57
EKP++C +CGK F Q +L VH +H P
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 44.9 bits (107), Expect = 1e-07
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYN 86
E P++C C ++F+Q+ +L H+ HT P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 37.2 bits (87), Expect = 6e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ KPY C CGK F + L H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 48.4 bits (116), Expect = 4e-09
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPF+C ECG F S +L H H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 46.0 bits (110), Expect = 3e-08
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P +C C +F+ +L HL +H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 43.7 bits (104), Expect = 2e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CG F +C L +H +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 47.9 bits (115), Expect = 7e-09
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
E P+ C +C F LK+HL HT P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 40.9 bits (97), Expect = 2e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ KPY C CG FR L+ H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.8 bits (112), Expect = 2e-08
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
+ K + C ECGK F + L H+ +H +S
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 41.0 bits (97), Expect = 3e-06
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ TD K YNC CGK F R L RH H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 36.8 bits (86), Expect = 1e-04
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCA 88
+ + C C ++F + +L H HT +
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 46.2 bits (110), Expect = 3e-08
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC 59
S EKP+ C EC + F + L H+ +H +S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 39.6 bits (93), Expect = 9e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ KPY+CA C + F N L +H H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 34.2 bits (79), Expect = 0.001
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
E P+ C C +F+ + L H HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 46.0 bits (110), Expect = 3e-08
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPH 57
S ++ ++C ECGK F Q +L +H+ +H P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + Y C CGK FR+ L H H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.1 bits (109), Expect = 3e-08
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAAC 90
C +C + F +L H L+H+ KPY+
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 40.3 bits (94), Expect = 7e-06
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCS 63
K C CGK F L HK+ H E P+ S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 35.7 bits (82), Expect = 3e-04
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
K C CGK+FR L RH L+H+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHS 36
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.9 bits (105), Expect = 5e-07
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Query: 30 KCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
K + + S CP+C F+ +LK H+ C
Sbjct: 48 KTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPV 105
Query: 90 CGKVFRRNCDLRRHSLTHNLG 110
C K F H +
Sbjct: 106 CKKEFTSTDSALDHVCKKHNI 126
Score = 43.0 bits (100), Expect = 3e-06
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 3 RAQHRDDMALETINLAQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
H + E+ L + F C C F S +L H + E CPVC
Sbjct: 49 TLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVC 106
Query: 63 SRSFNQRSNLKTHL 76
+ F + H+
Sbjct: 107 KKEFTSTDSALDHV 120
Score = 37.2 bits (85), Expect = 3e-04
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 34 CGKGFCQSRTLAVHKILHLEESPHKC----PVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
H++ ++ + + + S+ LL I + C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 90 CGKVFRRNCDLRRHSLTH 107
C F + L++H
Sbjct: 80 CLMPFSSSVSLKQHIRYT 97
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 42.7 bits (101), Expect = 7e-07
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 47 HKILHLEESPHKC--PVCSRSFNQRSNLKTHLLTHTDIKPYNCAA 89
E P C P C F++ L H +H+ +KP ++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 40.4 bits (95), Expect = 5e-06
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 22 IHSKEKPFKCTE--CGKGFCQSRTLAVHKILHLEESPHKC 59
+ EKPF CT CG F +S L+ H+ H P
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 39.6 bits (93), Expect = 1e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 74 THLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTH 107
+ + T KP+ C CG F R+ +L RH +H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 43.7 bits (102), Expect = 1e-06
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
++ ++C C H+ L + CP CS F + H + + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHE-SKCEYKKL 70
Query: 86 NCAACGKVFRRNCDLRRHSLT-HNLGSATSTSSGST 120
C C + F+ + + RH + HN + TS S+
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
Score = 29.1 bits (64), Expect = 0.21
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHNLGSAT 113
+ ++C +C+ + +H + C C F + H T
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 114 STSSGSTTATLLSV 127
T + S+
Sbjct: 72 CLECMRTFKSSFSI 85
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 42.2 bits (99), Expect = 1e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPH 57
+ E PFKC++C + F Q L H+ H +S
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 35.6 bits (82), Expect = 3e-04
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
E+P KC C R F QR+ L H TH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 34.8 bits (80), Expect = 6e-04
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 74 THLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + P+ C+ C +VF + L +H TH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.1 bits (103), Expect = 5e-06
Identities = 13/74 (17%), Positives = 20/74 (27%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHNLGSA 112
S S ++ T + Y C C V DL H +H L
Sbjct: 149 PMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Query: 113 TSTSSGSTTATLLS 126
+ +S +
Sbjct: 209 MTLTSSEIQRHITE 222
Score = 37.5 bits (86), Expect = 8e-04
Identities = 11/120 (9%), Positives = 25/120 (20%), Gaps = 13/120 (10%)
Query: 20 GYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
G + ++C VCS +L H+ +H
Sbjct: 144 GSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTHNLGSATSTSSGSTTATLLSVSPTSFIVESMVN 139
N L + ++ S+ + + + +
Sbjct: 204 GLHG-------------NMTLTSSEIQRHITEFISSWQNHPIVQVSADVENKKTAQLLHA 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 2e-04
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 42/143 (29%)
Query: 19 QG----Y------IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKC-PVCSRSFN 67
QG Y ++ + + + L + V ++ N
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLV-----GDLIKF---SAETLSELIRTTLDAEKVFTQGLN 214
Query: 68 QRSNLKTHLLTHTDIKP---YNCA-------------ACGKVFRRNCDLRRHSLTHNLGS 111
L + P Y + A V + L L
Sbjct: 215 ILE-----WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 112 ATSTSSGSTTATLLSVSPT--SF 132
AT S G TA ++ + + SF
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESF 292
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.4 bits (82), Expect = 3e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHL 52
+ KPF+C +C + F +S LA+H+ H+
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 35.4 bits (82), Expect = 4e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
T IKP+ C C + F R+ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.7 bits (75), Expect = 0.004
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
P +CP C RSF++ +L H H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 34.2 bits (79), Expect = 8e-04
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
C VC+R+F ++ +LK H +HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 30.7 bits (70), Expect = 0.016
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
+ + C C + F R L+RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 25.7 bits (57), Expect = 1.0
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
+ F C C + F + L H H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.001
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLT-HTDIK---PYNCAACGKVFRRNCDLRR 102
++ E ++C C+ + H+ + H ++ Y C C + +R L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 103 HSLTHNLGSATST 115
H+L ++ G
Sbjct: 69 HNLKYHPGEENFK 81
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.6 bits (76), Expect = 0.002
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHK 58
+ G S+EK +C ECG+ F Q +L H++LH+ +
Sbjct: 2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 28.6 bits (63), Expect = 0.15
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHNLGSATSTSSG 118
K + C CG++F + L H + H + SSG
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46
Score = 27.9 bits (61), Expect = 0.24
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E H+C C F Q +L H + H
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHM 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 31.9 bits (73), Expect = 0.005
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 53 EESPHKCPV--CSRSFNQRSNLKTHLLTHT 80
++ H C + C + + + S+L+ HL HT
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 25.4 bits (56), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
K + C CGKV+ + LR H H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 23.1 bits (50), Expect = 8.7
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 24 SKEKPFKCT--ECGKGFCQSRTLAVHKILH 51
K+K C CGK + ++ L H H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 34.9 bits (80), Expect = 0.006
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 IHSKEKPFKCTECGKGFCQSR--TLAVHKILHLEESPHK 58
I S + KC C K FC ++ T + H + HL S H
Sbjct: 19 IDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHN 57
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.8 bits (71), Expect = 0.009
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 79 HTDIKPYNCAACGKVFRRNCDLRRHSLTHNLGSATSTSS 117
+ KPY+C CG F+R + H +H+ S S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
Score = 29.1 bits (64), Expect = 0.084
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
E P+ CPVC F ++ + H+ +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 28.0 bits (61), Expect = 0.21
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILH 51
S EKP+ C CG F + ++ H H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.012
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILH 51
+ G KEK FKC +C K F S+ L H+ +H
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.2 bits (54), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTHNLGSATSTSSG 118
+ K + C C K F + L +H H G + SSG
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG 46
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 33.8 bits (77), Expect = 0.015
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 22 IHSKEKPFKCTECGKGFCQSR--TLAVHKILHLEESPHK 58
IH C K FC R T H + HL + K
Sbjct: 14 IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK 52
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 30.7 bits (69), Expect = 0.018
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
+PY+C C K F RN DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 27.3 bits (60), Expect = 0.32
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 26 EKPFKC--TECGKGFCQSRTLAVHKILHLEES 55
++P+ C C K F ++ L HK H E++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 23.8 bits (51), Expect = 4.5
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 54 ESPHKC--PVCSRSFNQRSNLKTHLLTHTD 81
+ P+ C P C ++F + +L H +H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 30.3 bits (69), Expect = 0.019
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
+P+ C + CGK F R+ +L+RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.2 bits (61), Expect = 0.25
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 56 PHKCPV--CSRSFNQRSNLKTHLLTHTDIK 83
P C C + F + L+ H THT K
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.3 bits (56), Expect = 1.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 27 KPFKCT--ECGKGFCQSRTLAVHKILH 51
+PF CT CGK F +S L HK H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.043
Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 52 LEESPHKCPV--CSRSFNQRSNLKTHLLTHTD 81
+ + +C C+++F +R N+++H+ TH +
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 27.1 bits (60), Expect = 0.49
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
K + C C K F+R ++R H TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.2 bits (70), Expect = 0.060
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
KC G H E + CP C R F Q+ ++ H+L +
Sbjct: 80 SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQV 138
Query: 86 NCAACGKVFRRNCDLRRHSLT 106
+C C D H
Sbjct: 139 SCDNCAASMAFE-DKEIHDQN 158
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.12
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 31 CTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAAC 90
+ K +H+ L E + + + +L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQ 235
Query: 91 GK 92
GK
Sbjct: 236 GK 237
Score = 27.5 bits (60), Expect = 1.3
Identities = 7/45 (15%), Positives = 10/45 (22%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
+ + S H K +V DLR
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 25.9 bits (56), Expect = 5.5
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILH 51
+ EK + + + L L
Sbjct: 202 LARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 29.9 bits (67), Expect = 0.17
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 32 TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLK 73
EC FC I L +CP C + + +L+
Sbjct: 71 KECLHRFCAD-----CIITALRSGNKECPTCRKKLVSKRSLR 107
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.4 bits (60), Expect = 0.27
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+ P C +C +F ++N HL HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 28.2 bits (63), Expect = 0.34
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 10/49 (20%)
Query: 28 PFKCTECGKGFCQS--RTLAVHKILHLEES-PHKCPVCSRSFNQRSNLK 73
CG +C RT L ES H CP C ++ L
Sbjct: 26 AVVIPCCGNSYCDECIRT-------ALLESDEHTCPTCHQNDVSPDALI 67
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.43
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 59 CPVCSRSFNQR-SNLKTHLLT-HTDIKPYNCAACGKVFRRNCDLRRHSLT 106
CP C+ + LK H+ C C K F+ L H++
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 28.5 bits (64), Expect = 0.44
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 9 DMALETINLAQGYIHSKEKPFKC------------TECGKGFCQSRTLAVHKILHLEESP 56
D++ + Q I++ +K +C T+C FC+ + K+L+ ++ P
Sbjct: 2 DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKF---CMLKLLNQKKGP 58
Query: 57 HKCPVCSRSFNQRS 70
+CP+C +RS
Sbjct: 59 SQCPLCKNDITKRS 72
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 0.48
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 18 AQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
+ G + + +C ECGK F S L H+ LH ES
Sbjct: 2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGES 39
Score = 26.0 bits (56), Expect = 1.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 84 PYNCAACGKVFRRNCDLRRHSLTHNLGSATST 115
C CGK+FR + L H H S S+
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGESGPSS 43
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.51
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H C +C + F + LK+H L HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
Score = 24.0 bits (51), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
S K C CGK F TL HK+LH +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 23.2 bits (49), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
K + C CGK F+ L+ H L H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLH 32
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 26.6 bits (58), Expect = 0.57
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
+KPY C C + F L+RH H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 25.9 bits (56), Expect = 0.80
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTDIK 83
P+ C C R F L+ H+ HT K
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.9 bits (51), Expect = 4.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
KP+ C C + F L H +H E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 75
Score = 27.3 bits (60), Expect = 0.61
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 9/33 (27%)
Query: 28 PFKCTECGKGFCQSRTLAVHKILHLEESPHKCP 60
PF C C FC H + H C
Sbjct: 29 PFVCDGCSGIFCLE---------HRSKDSHGCS 52
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 28.0 bits (62), Expect = 0.64
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 11/45 (24%)
Query: 32 TECGKGFCQS---RTLAVHKILHLEESPHKCPVCSRSFNQRSNLK 73
T C C+ R CP C + ++
Sbjct: 68 TVCQHNVCKDCLDR--------SFRAQVFSCPACRYDLGRSYAMQ 104
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.3 bits (61), Expect = 0.72
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 32 TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKT 74
+C FC++ ++ + CPVC + NLK
Sbjct: 35 ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY-PFGNLKP 76
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 0.76
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
P+KCP CS + ++NL HL HT
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHT 33
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.9 bits (56), Expect = 0.77
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
P+ C VC + F+ + ++TH HT
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 24.4 bits (52), Expect = 2.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 82 IKPYNCAACGKVFRRNCDLRRHSLTH 107
++PY+C+ CGK F + H H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.1 bits (62), Expect = 0.80
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 47 HKILHLEESPHKCPVCSRSF-NQRSNLKTHLLTH 79
+ L + KC C +F + LK HL
Sbjct: 160 GTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEE 193
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 25.8 bits (56), Expect = 0.80
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 27 KPFKCTECGKGFCQSRTLAVH 47
KP+ C CGK F QS LA H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 23.1 bits (49), Expect = 8.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KPY C CGK F ++ L H H+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 26.9 bits (60), Expect = 0.86
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 32 TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRS 70
+CG FC + +I KCP+C S + +
Sbjct: 36 IDCGHNFCLK---CITQIGETSCGFFKCPLCKTSVRKNA 71
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA
surveillance binds to TRF4P/AIR2P heterodimer; 2.70A
{Saccharomyces cerevisiae}
Length = 83
Score = 26.9 bits (59), Expect = 0.98
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKV--FRRNCDLRRHSLTHNL-GSAT 113
+CP R++ + + C CG F +C +R S N GSA
Sbjct: 19 ERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRSSRVPNEDGSAF 78
Query: 114 STS 116
+ S
Sbjct: 79 TGS 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring
finger; NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 26.4 bits (58), Expect = 1.0
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
+ C C FC + VH LH CP C
Sbjct: 31 YVCAVCQNVFCVDCDVFVHDSLHS------CPGC 58
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 1.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 83 KPYNCAACGKVFRRNCDLRRHS 104
K Y C C + F R L RH+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHA 22
Score = 24.0 bits (52), Expect = 4.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTH 75
+ C +C+R+F +R L H
Sbjct: 2 AYACGLCNRAFTRRDLLIRH 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.8 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 32 TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRS 70
+CG FCQ+ A HK L++ CPVC S+ +
Sbjct: 35 LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 26.3 bits (57), Expect = 1.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 85 YNCAACGKVFRRNCDLRRHSLTHNLGS 111
C CGKVF LR+H H + S
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQHGVTS 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 27.0 bits (60), Expect = 1.2
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 11/48 (22%)
Query: 28 PFKCTECGKGFCQS--RTLAVHKILHLEESPHKCPVCSRSFNQRSNLK 73
+C +C R L +CP C +LK
Sbjct: 35 AMIIPQCSHNYCSLCIRK-------FLSYK-TQCPTC-CVTVTEPDLK 73
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 27.4 bits (60), Expect = 1.3
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRS 70
+ TECG FC + ++ + CP C + N +
Sbjct: 87 QNGRLIVSTECGHVFCS------QCLRDSLKNANTCPTCRKKINHKR 127
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 26.6 bits (59), Expect = 1.3
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 28 PFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTH 75
CG +C + L LE H CP C ++ L
Sbjct: 28 AVVIPCCGNSYCDE---CIRTAL-LESDEHTCPTCHQNDVSPDALSGP 71
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
P KC +C + +SNLK H+ H+
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMNRHS 33
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.6 bits (55), Expect = 1.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 52 LEESPHKCPVCSRSFNQRSNLKTHL 76
E P CP+C Q NL+ HL
Sbjct: 20 QSEQPATCPICYAVIRQSRNLRRHL 44
Score = 24.1 bits (51), Expect = 5.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 83 KPYNCAACGKVFRRNCDLRRH 103
+P C C V R++ +LRRH
Sbjct: 23 QPATCPICYAVIRQSRNLRRH 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 2.0
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 13/39 (33%)
Query: 58 KCPVCSRSFNQRSNLKTHLLT---HTDIKPYNCAACGKV 93
CP C ++ D+ CA CG V
Sbjct: 23 TCPECKVY-------PPKIVERFSEGDV---VCALCGLV 51
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 26.9 bits (60), Expect = 2.2
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC-SRSF 66
F+C C R AV + ++ P C C RSF
Sbjct: 135 FECRGCM------RHHAVTQSTNMITEPSLCSECGGRSF 167
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 27.1 bits (60), Expect = 2.2
Identities = 7/49 (14%), Positives = 9/49 (18%), Gaps = 11/49 (22%)
Query: 50 LHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNC 98
+ E C C Y C C + C
Sbjct: 351 MFSFEETTSCKACQMLLRGTFYQG-----------YRCYRCRAPAHKEC 388
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.9 bits (54), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIK 83
CP C + F + +L H+L H + K
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENKK 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.1 bits (59), Expect = 2.5
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 57 HKCPVCSRSFNQRSNLKTHL-LTHTD 81
+ C VC+ F+ S L HL H D
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRD 142
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 24.7 bits (53), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
KP +C CGK F Q+ +L H H E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 24.0 bits (51), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
P +C +C ++F Q S+L H+ HT
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHT 26
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.7 bits (53), Expect = 3.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 85 YNCAACGKVFRRNCDLRRHSLTH 107
Y+C C + F+ D RH L H
Sbjct: 10 YDCHICERKFKNELDRDRHMLVH 32
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 26.6 bits (58), Expect = 3.1
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 2 ARAQHRDDMALETINLAQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPV 61
A H + +G +K + C CG + ++E+P CPV
Sbjct: 112 AEKIHAELYRKAKEKAEKGEDIEIKKVYICPICG-----------Y--TAVDEAPEYCPV 158
Query: 62 C 62
C
Sbjct: 159 C 159
Score = 26.2 bits (57), Expect = 3.9
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 20 GYIHSKEKPFKCTECG 35
GY E P C CG
Sbjct: 145 GYTAVDEAPEYCPVCG 160
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/39 (17%), Positives = 9/39 (23%), Gaps = 1/39 (2%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFN 67
+K LE P CP C +
Sbjct: 142 YKHIHPDCMQEFEWPEDEEMPEVLEM-PTICPKCGKPGQ 179
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 25.1 bits (55), Expect = 3.4
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 17/65 (26%)
Query: 18 AQGYIHSKEKPFKC------------TECGKGFCQSRTLAVHKILHLEESPHKCPVCSRS 65
+ G++ + E +KC TECG FC+S A+ L S KC C S
Sbjct: 5 SSGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAAL-----LSSSSPKCTACQES 59
Query: 66 FNQRS 70
+
Sbjct: 60 IVKDK 64
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.7 bits (58), Expect = 3.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHL 76
E CP CSR F S ++HL
Sbjct: 289 EAKGIYCPFCSRWFKTSSVFESHL 312
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.1 bits (52), Expect = 3.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIKP 84
CP C + F + +L H+ H +
Sbjct: 5 CPECPKRFMRSDHLSKHITLHELLGE 30
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 26.1 bits (57), Expect = 3.7
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 11/45 (24%)
Query: 32 TECGKGFCQS---RTLAVHKILHLEESPHKCPVCSRSFNQRSNLK 73
TEC C+ R + CP C Q +
Sbjct: 94 TECFHNVCKDCLQR--------SFKAQVFSCPACRHDLGQNYIMI 130
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 3.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIK 83
C C++ F + +L+ HL HT+ K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 26.5 bits (58), Expect = 4.2
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
C C F+ ++ ++C ACGK+ RNC ++ L +
Sbjct: 372 VTHVMMCMNCGCDFS------------LTLRRHHCHACGKIVCRNCSRNKYPLKYL 415
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 24.4 bits (52), Expect = 4.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTH 75
+ P+ C +C + + R L H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYH 26
Score = 24.4 bits (52), Expect = 5.5
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 83 KPYNCAACGKVFRRNCDLRRH-SLTHNLGSATSTSSGSTTAT 123
KPY C CGK ++ L H + +H S T
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPT 47
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 23.6 bits (50), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTD 81
+KC +C RSF ++S L H H +
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 25.2 bits (55), Expect = 5.4
Identities = 12/47 (25%), Positives = 13/47 (27%), Gaps = 9/47 (19%)
Query: 26 EKPFKCTECGKGFCQS--RTLAVHKILHLEESPHKCPVCSRSFNQRS 70
C C K C S R L E +CP C R
Sbjct: 33 RDARLCPHCSKLCCFSCIRR-------WLTEQRAQCPHCRAPLQLRE 72
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 25.7 bits (57), Expect = 6.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 LKTHLLTHTDIKPYN 86
L + LTHTD+KP N
Sbjct: 139 LHENQLTHTDLKPEN 153
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 23.6 bits (51), Expect = 6.7
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
+ + C+ C + F ++ L H +H +
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRD 32
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 25.7 bits (57), Expect = 7.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 72 LKTHLLTHTDIKPYN 86
L ++ LTHTD+KP N
Sbjct: 134 LHSNKLTHTDLKPEN 148
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 25.4 bits (56), Expect = 7.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 LKTHLLTHTDIKPYN 86
L+ LTHTD+KP N
Sbjct: 153 LRKMSLTHTDLKPEN 167
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.7 bits (50), Expect = 7.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTH 79
+ CPVC +SF++ +K+H+ T+
Sbjct: 10 YSCPVCEKSFSEDRLIKSHIKTN 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 24.9 bits (54), Expect = 8.0
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 12/81 (14%)
Query: 32 TECGKGFCQSRTLAVHKILHLEESPHKCPVC-----SRSFNQRSNLKTHLLTHTDIKPYN 86
T C FC+ L L+ CP C ++L +K
Sbjct: 39 TSCKHLFCRICILRC-----LKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVK-CP 92
Query: 87 CAACGKVFRRNCDLRRHSLTH 107
C + H +H
Sbjct: 93 AQDCNEEVSL-EKYNHHVSSH 112
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL
protein structure initiative, midwest center for
structural genomics, MCSG; 2.98A {Veillonella parvula}
Length = 349
Score = 25.3 bits (56), Expect = 8.2
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 82 IKPYNCAACGKVFRRNCDLRRH 103
++ + GK ++ +
Sbjct: 305 LETMDSYEIGKSMKKIIKEGNY 326
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 24.3 bits (53), Expect = 8.4
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 46 VHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVF 94
V + + +KCPVC +R++ + C CG
Sbjct: 17 VRDVEIKHKKKYKCPVCGFPKLKRAS----------TSIWVCGHCGYKI 55
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 24.1 bits (52), Expect = 8.7
Identities = 14/57 (24%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 51 HLEESPHK---CPV-CSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRH 103
HL CP C R +L HL + C CG F H
Sbjct: 8 HLNTCSFNVIPCPNRCPMKL-SRRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESH 62
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered,
structural proteomics, META binding, zinc-finger,
structural genomics; NMR {Escherichia coli}
Length = 108
Score = 24.5 bits (53), Expect = 9.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 3 RAQHRDDMALE-TINLAQGYIHSKEKPFKCTECGK 36
+ + +E I A+G I E +C ECG
Sbjct: 30 AVNEQINSTIEDAIARARGEIPRGESLDECEECGA 64
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 25.1 bits (54), Expect = 9.8
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 12/58 (20%)
Query: 5 QHRDDMALETINLAQGYIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
+ R I + ++ + ++C CG + +P CP C
Sbjct: 132 EKRFLDFARNIKEGRVFLREQATKWRCRNCGY------------VHEGTGAPELCPAC 177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.128 0.386
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,956,034
Number of extensions: 97855
Number of successful extensions: 1291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 662
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)