RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6676
(144 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 55.8 bits (134), Expect = 3e-12
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTH 79
+K + C +CGK F H +HL P+ C VC + F + +L H+ H
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 46.6 bits (110), Expect = 1e-08
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + C C +SF +S H+ H ++PY C CGK F+ L H H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 28.1 bits (62), Expect = 0.085
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILH 51
H +P+ C CGK F L H +H
Sbjct: 25 HLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 46.5 bits (111), Expect = 8e-09
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVH-KILHLEESPHKCPV 61
S KP+ C CGKGF + L H K +H E PHKC V
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 43.8 bits (104), Expect = 8e-08
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHL-LTHTDIKPYNC 87
P+ C C + F++ +L H+ HT +P+ C
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 32.7 bits (75), Expect = 0.001
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRH 103
KPY C +CGK F R L H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGH 24
Score = 23.0 bits (50), Expect = 4.0
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 22 IHSKEKPFKC 31
+H+ E+P KC
Sbjct: 28 VHTSERPHKC 37
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 46.1 bits (110), Expect = 8e-09
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
IHS EKP+ C ECGK F +S L H+ +H E
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 41.5 bits (98), Expect = 5e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
H E P+ C C ++F++ S L H HT
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHT 31
Score = 39.1 bits (92), Expect = 5e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 79 HTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
H+ KPY C CGK F R+ L +H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 44.3 bits (105), Expect = 5e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEES 55
H+ EKP+ C+ C K F Q + L +H + + +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 40.8 bits (96), Expect = 9e-07
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
H E P+ C C ++F Q+ L H + D
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 40.0 bits (94), Expect = 2e-06
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
THT KPY C+ C K FR+ L H ++
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 42.3 bits (100), Expect = 3e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILH 51
HS EKP++C C F QS T+ +H +
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 38.4 bits (90), Expect = 8e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
H E P++C +C F Q +K H+L
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 37.7 bits (88), Expect = 2e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 78 THTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
TH+ KPY C C F ++ ++ H L
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQK 31
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 40.3 bits (95), Expect = 1e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILH 51
+KPF+C C + F +S L H H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 39.5 bits (93), Expect = 2e-06
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
+ P +C +C R+F++ +L TH+ THT
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 34.9 bits (81), Expect = 2e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KP+ C C + F R+ L H TH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 40.1 bits (94), Expect = 2e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHL 52
+ KPF+C +C + F +S LA+H+ H+
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 37.8 bits (88), Expect = 1e-05
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
T IKP+ C C + F R+ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.1 bits (81), Expect = 1e-04
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 47 HKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
P +CP C RSF++ +L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 39.8 bits (93), Expect = 3e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 45 AVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHT 80
+ E +KC C +SF+ S+L H THT
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 36
Score = 37.8 bits (88), Expect = 1e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 22 IHSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
+ + +KC ECGK F S L+ H+ H E
Sbjct: 6 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 36.3 bits (84), Expect = 5e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ + Y C CGK F + DL +H TH
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.1 bits (92), Expect = 4e-06
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
C VC+R+F ++ +LK H +HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 36.8 bits (86), Expect = 2e-05
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILH 51
+ F C C + F + L H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 34.9 bits (81), Expect = 2e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
+ + C C + F R L+RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.9 bits (91), Expect = 5e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 58 KCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
P C +SFN + +LK H+ H+D + Y C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 36.2 bits (84), Expect = 6e-05
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 29 FKCTE--CGKGFCQSRTLAVHKILHLEESPHKC 59
F C E CGK F + L H LH + + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 27.4 bits (61), Expect = 0.11
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 86 NCAACGKVFRRNCDLRRHSLTH 107
ACGK F L+ H H
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLH 26
Score = 22.8 bits (49), Expect = 4.7
Identities = 3/10 (30%), Positives = 6/10 (60%)
Query: 22 IHSKEKPFKC 31
+HS + + C
Sbjct: 25 LHSDTRDYIC 34
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 38.7 bits (91), Expect = 6e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILH 51
KP+KC ECGK F Q+ L H+ +H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 34.1 bits (79), Expect = 3e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
P+KC C ++F+Q S L H HT
Sbjct: 2 PYKCLECGKAFSQNSGLINHQRIHT 26
Score = 33.7 bits (78), Expect = 4e-04
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
KPY C CGK F +N L H H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 39.0 bits (91), Expect = 6e-06
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 23 HSKEKPFKCTECGKGFCQSRTLAVHKILHLEE 54
S ++PF C C F A H +H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 35.9 bits (83), Expect = 6e-05
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 51 HLEESPHKCPVCSRSFNQRSNLKTHLLTHTD 81
+ P C +C +F ++N HL HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 35.1 bits (81), Expect = 1e-04
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 79 HTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
+ +P+ C C F + RH H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 36.6 bits (85), Expect = 3e-05
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
CP C + F + +L H+ TH
Sbjct: 2 KFACPECPKRFMRSDHLSKHIKTHQ 26
Score = 35.8 bits (83), Expect = 6e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
K F C EC K F +S L+ H H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNK 28
Score = 33.9 bits (78), Expect = 4e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTH 107
K + C C K F R+ L +H TH
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 35.4 bits (82), Expect = 1e-04
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 54 ESPHKCPV--CSRSFNQRSNLKTHLLTHT 80
+ P+ C C ++F + +L H +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 35.4 bits (82), Expect = 1e-04
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 26 EKPFKCTE--CGKGFCQSRTLAVHKILHLEES 55
++P+ C C K F ++ L HK H E++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 30.8 bits (70), Expect = 0.005
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
+PY+C C K F RN DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 34.6 bits (80), Expect = 2e-04
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 56 PHKC--PVCSRSFNQRSNLKTHLLTHT 80
PHKC C +S+++ NLKTHL +HT
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSHT 28
Score = 31.9 bits (73), Expect = 0.002
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 27 KPFKCTE--CGKGFCQSRTLAVHKILH 51
KP KCT C K + + L H H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 31.2 bits (71), Expect = 0.003
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
KP+ C C K + R +L+ H +H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 33.9 bits (78), Expect = 4e-04
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 56 PHKCPV--CSRSFNQRSNLKTHLLTHT 80
P+ CP C++ F Q +NLK+H+LTH
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 28.5 bits (64), Expect = 0.030
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
+PY C C K F ++ +L+ H LTH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 27.7 bits (62), Expect = 0.074
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 27 KPFKCTE--CGKGFCQSRTLAVHKILH 51
+P+ C C K F QS L H + H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.4 bits (77), Expect = 4e-04
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 56 PHKC--PVCSRSFNQRSNLKTHLLTHT 80
P+ C C R F++ ++L H+ HT
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIHT 28
Score = 31.9 bits (73), Expect = 0.002
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 27 KPFKCTE--CGKGFCQSRTLAVHKILH 51
+P+ C C + F +S L H +H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 30.8 bits (70), Expect = 0.005
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
+PY C +C + F R+ DL RH H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 33.1 bits (76), Expect = 7e-04
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 56 PHKC--PVCSRSFNQRSNLKTHLLTHT 80
P C C + F + L+ H THT
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 31.9 bits (73), Expect = 0.002
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 27 KPFKCT--ECGKGFCQSRTLAVHKILH 51
+PF CT CGK F +S L HK H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 31.1 bits (71), Expect = 0.004
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 83 KPYNCAA--CGKVFRRNCDLRRHSLTH 107
+P+ C CGK F R+ +L+RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 32.7 bits (75), Expect = 0.001
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 56 PHKC--PVCSRSFNQRSNLKTHLLTHT 80
P +C C + F+ NL+TH+ HT
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIHT 28
Score = 31.6 bits (72), Expect = 0.003
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 27 KPFKCTE--CGKGFCQSRTLAVHKILHLEE 54
KPF+CT CGK F L H +H +
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 30.4 bits (69), Expect = 0.007
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 83 KPYNC--AACGKVFRRNCDLRRHSLTH 107
KP+ C CGK F + +LR H H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 32.3 bits (73), Expect = 0.001
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHT 80
PHKC VC + F+++ LKTH+ HT
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHT 25
Score = 22.3 bits (47), Expect = 5.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 84 PYNCAACGKVFRRNCDLRRHSLTH 107
P+ C CGK F R L+ H H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 31.1 bits (70), Expect = 0.007
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 69 RSNLKTHLLTHTDIKPYNC--AACGKVFRRNCDLRRHSLTH 107
R ++ ++ K + C C K F+R ++R H TH
Sbjct: 4 RGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 29.5 bits (66), Expect = 0.024
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 16 NLAQGYIHSKEKPFKCTECGKG--FCQSRTLAVHKILHLEE 54
++ + +K F+C G F + + H HLE+
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 29.1 bits (65), Expect = 0.030
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 HKILHLEESPHKCPVC--SRSFNQRSNLKTHLLTHT 80
+ + + +C +++F +R N+++H+ TH
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.0 bits (65), Expect = 0.024
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
KP+ C CG+ F R+ + +RH+ H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIHL 27
Score = 28.2 bits (63), Expect = 0.047
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHL 52
EKPF C CG+ F +S H +HL
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHL 27
Score = 23.2 bits (50), Expect = 3.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTH 79
E P C +C R F + K H H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 28.1 bits (62), Expect = 0.065
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKPY 85
C +C + F +L H L+H+ KPY
Sbjct: 6 VACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 26.6 bits (58), Expect = 0.19
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHN 108
K C CGK+FR L RH L+H+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHS 29
Score = 24.3 bits (52), Expect = 1.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEESPH 57
K C CGK F L HK+ H E P+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.3 bits (60), Expect = 0.085
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 87 CAACGKVFRRNCDLRRHSLTH 107
CA CGK F + L+RH L H
Sbjct: 5 CAECGKAFVESSKLKRHQLVH 25
Score = 27.3 bits (60), Expect = 0.089
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHT 80
H C C ++F + S LK H L HT
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVHT 26
Score = 25.7 bits (56), Expect = 0.41
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 31 CTECGKGFCQSRTLAVHKILHLEE 54
C ECGK F +S L H+++H E
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 26.6 bits (59), Expect = 0.17
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 13/37 (35%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
+K C CG +H E KCP+C
Sbjct: 3 DKFHLCPICGY-------------IHKGEDFEKCPIC 26
Score = 24.6 bits (54), Expect = 0.88
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 20 GYIHSKEKPFKCTECG 35
GYIH E KC C
Sbjct: 12 GYIHKGEDFEKCPICF 27
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 26.6 bits (59), Expect = 0.18
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 13/37 (35%)
Query: 26 EKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
+K + C CG ++E+P CPVC
Sbjct: 3 KKVYICPICGY-------------TAVDEAPEYCPVC 26
Score = 24.3 bits (53), Expect = 1.4
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 20 GYIHSKEKPFKCTECG 35
GY E P C CG
Sbjct: 12 GYTAVDEAPEYCPVCG 27
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.5 bits (58), Expect = 0.19
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTH 79
E P+ CPVC F ++ + H+ +H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
Score = 23.8 bits (51), Expect = 2.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 83 KPYNCAACGKVFRRNCDLRRHSLTHNLG 110
KPY+C CG F+R + H +H+
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRSHDGS 29
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 26.9 bits (59), Expect = 0.22
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 85 YNCAACGKVFRRNCDLRRHSLTHNLGS 111
C CGKVF LR+H H + S
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQHGVTS 33
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 26.2 bits (57), Expect = 0.29
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTHNLGSATSTSSGSTT 121
T IKPY C C K F RH + + + +TT
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTT 42
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 27.3 bits (60), Expect = 0.31
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 9 DMALETINLAQGYIHSKEKPFKC------------TECGKGFCQSRTLAVHKILHLEESP 56
D++ + Q I++ +K +C T+C FC+ K+L+ ++ P
Sbjct: 2 DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCM---LKLLNQKKGP 58
Query: 57 HKCPVCSRSFNQRSNLKTHLL 77
+CP+C +RS ++
Sbjct: 59 SQCPLCKNDITKRSLQESTRF 79
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 25.5 bits (55), Expect = 0.36
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLL 77
P+KC CS+ F Q+ +L++H++
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMI 23
Score = 22.1 bits (46), Expect = 8.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 84 PYNCAACGKVFRRNCDLRRHSL 105
PY C++C + F + DL+ H +
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMI 23
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 26.3 bits (58), Expect = 0.39
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 29 FKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
+ C C FC + VH L H CP C
Sbjct: 31 YVCAVCQNVFCVDCDVFVHDSL------HSCPGC 58
Score = 24.0 bits (52), Expect = 2.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 80 TDIKPYNCAACGKVFRRNCDLRRHSLTHN 108
D Y CA C VF +CD+ H H+
Sbjct: 26 KDQHVYVCAVCQNVFCVDCDVFVHDSLHS 54
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 44
Score = 25.8 bits (57), Expect = 0.42
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 12/39 (30%)
Query: 24 SKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVC 62
+ ++C CG + +P CP C
Sbjct: 4 EQATKWRCRNCGY------------VHEGTGAPELCPAC 30
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 25.5 bits (55), Expect = 0.51
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 85 YNCAACGKVFRRNCDLRRHSLTH 107
+ C+ C + FRR +LR H ++H
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSH 27
Score = 24.7 bits (53), Expect = 0.81
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E C VC +F +R L+ H+++HT
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHT 28
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.4 bits (55), Expect = 0.55
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 54 ESPHKCPVCSRSFNQRSNLKTHLLTHT 80
E P KC +C + S L HL +HT
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHT 27
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 25.4 bits (56), Expect = 0.59
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 27 KPFKCTECGKGFCQSRTLAVHKILHLEE 54
+ + C+ C + F ++ L H +H +
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRD 31
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.8 bits (57), Expect = 0.61
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 57 HKCPVCSRSFNQRSNLKTHL 76
H+C C+R F +NLKTH
Sbjct: 16 HRCLACARYFIDSTNLKTHF 35
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 25.9 bits (56), Expect = 0.61
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 52 LEESPHKCPVCSRSFNQRSNLKTHL 76
E P CP+C Q NL+ HL
Sbjct: 20 QSEQPATCPICYAVIRQSRNLRRHL 44
Score = 24.3 bits (52), Expect = 1.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 83 KPYNCAACGKVFRRNCDLRRH 103
+P C C V R++ +LRRH
Sbjct: 23 QPATCPICYAVIRQSRNLRRH 43
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 25.8 bits (56), Expect = 0.72
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 12/46 (26%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNC 98
+ C C + F+ + ++C CG +F C
Sbjct: 5 DNEVQNCMACGKGFSVTV------------RRHHCRQCGNIFCAEC 38
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 25.5 bits (55), Expect = 0.91
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 6/56 (10%)
Query: 21 YIHSKEKPFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHL 76
+ CG C+S CP C ++SN + L
Sbjct: 13 KYRNPSLKLMVNVCGHTLCESCVDL-----LFVRGAGNCPECGTPL-RKSNFRVQL 62
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 26.0 bits (56), Expect = 1.2
Identities = 12/64 (18%), Positives = 19/64 (29%)
Query: 28 PFKCTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNC 87
P C +C + A+ +L EE P + + I +C
Sbjct: 18 PENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDC 77
Query: 88 AACG 91
CG
Sbjct: 78 MGCG 81
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 1.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 56 PHKCPVCSRSFNQRSNLKTHL 76
P KC CS Q SNL H+
Sbjct: 2 PFKCNYCSFDTKQPSNLSKHM 22
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.0 bits (51), Expect = 1.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLTHTD 81
P+KC C + S+L HL H+D
Sbjct: 3 PYKCKTCDYAAADSSSLNKHLRIHSD 28
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.5 bits (55), Expect = 2.0
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 11/46 (23%)
Query: 53 EESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNC 98
+ ++C +C + C C K C
Sbjct: 45 GDGVNRCILCGEQLGMLGSASVV-----------CEDCKKNVCTKC 79
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 23.3 bits (50), Expect = 2.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHTDIK 83
C C + S LK H+ THTD++
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.2 bits (49), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTD 81
+KC +C RSF ++S L H H +
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHKN 25
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 24.6 bits (53), Expect = 3.3
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 31 CTECGKGFCQSRTLAVHKILHLEESPHKC 59
C CG C + H H + H
Sbjct: 37 CRTCGHVGCCDDSPHKHATRHFHATGHPI 65
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 23.4 bits (50), Expect = 4.7
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 57 HKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTH 107
C +CS+ F+ + + ++C +CG VF + L
Sbjct: 6 DACMICSKKFSLLN------------RKHHCRSCGGVFCQEHSSNSIPLPD 44
>d1b35b_ b.121.4.1 (B:) Insect picorna-like virus coat proteins
{Cricket paralysis virus [TaxId: 12136]}
Length = 255
Score = 24.6 bits (53), Expect = 4.7
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 111 SATSTSSGSTTATLLSVSPTSFIVESMVNME 141
TS V+P++ + +VN+
Sbjct: 11 RLTSEQKEIVHFVSEGVTPSTTALPDIVNLS 41
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.8 bits (48), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 29 FKCTECGKGFCQSRTLAVH 47
F C++CGK F + T+A H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.3 bits (47), Expect = 5.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 58 KCPVCSRSFNQRSNLKTHLLTHT 80
+CP C + F + LK H HT
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHT 24
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 38
Score = 22.8 bits (49), Expect = 5.4
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 31 CTECGKGFCQSRTLAVHKILHLEESPHKCPVCSRSFNQRS 70
G+ + HKI + + K V + QRS
Sbjct: 5 HPASGRSY--------HKIFNPPKEDMKDDVTGEALVQRS 36
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 22.5 bits (48), Expect = 5.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 84 PYNCAACGKVFRRNCDLRRH 103
PY C C + F R L RH
Sbjct: 1 PYPCGLCNRAFTRRDLLIRH 20
Score = 22.5 bits (48), Expect = 6.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 56 PHKCPVCSRSFNQRSNLKTH 75
P+ C +C+R+F +R L H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRH 20
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 24.4 bits (52), Expect = 6.3
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 75 HLLTHTDIKPYNCAACGKVFRRNCDLRRHSLTHNL 109
H ++ V+R + L
Sbjct: 61 HRKRYSPDSQIKVWYADFVYRYSGSDLVAEYQLGL 95
>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 23.4 bits (50), Expect = 7.0
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 28 PFKCTECGKGFCQS-RTLAVHKILHLEESPHKCPVCSRSFNQRS 70
C C K FC R + H LE + + +
Sbjct: 40 AVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRSGP 83
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 21.9 bits (46), Expect = 7.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 PFKCTECGKGFCQSRTLAVHK 48
PF+C +CGK + + L H+
Sbjct: 1 PFECPKCGKCYFRKENLLEHE 21
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 23.1 bits (50), Expect = 8.1
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 46 VHKILHLEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCAACGKVF 94
V + + HKCPVC +R T I + C CG
Sbjct: 17 VADVEIKHKKKHKCPVCGFKKLKR--------AGTGI--WMCGHCGYKI 55
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.0 bits (46), Expect = 8.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 56 PHKCPVCSRSFNQRSNLKTHLLT 78
++C C SNLKTH+ T
Sbjct: 2 TYQCQYCEFRSADSSNLKTHIKT 24
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (46), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 90 CGKVFRRNCDLRRHSLTH 107
C K+FR N +R+H TH
Sbjct: 9 CTKMFRDNSAMRKHLHTH 26
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.0 bits (47), Expect = 8.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 59 CPVCSRSFNQRSNLKTHLLTHT 80
C R F + L H+ HT
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHT 31
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 21.9 bits (46), Expect = 9.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 60 PVCSRSFNQRSNLKTHLLTHT 80
C ++N+ L+ HL HT
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHT 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.128 0.386
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,116
Number of extensions: 20362
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 161
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)