BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6677
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23253|TCNA_TRYCR Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
Length = 1162
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 129/287 (44%), Gaps = 52/287 (18%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
TPS P+D S TPS P D S TPS +P D S TPS +P D S TPS P
Sbjct: 634 GTPSTPVDSSAHGTPS--TPADSSAHGTPS--TPVDSSAHSTPS--TPVDSSAHSTPSTP 687
Query: 62 ----------NPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTT 111
P D S TPS P D S GTPS P D S TPS P D +
Sbjct: 688 VDSSAHGAPSTPADSSAHGTPS--TPVDSSAHGTPS--TPADSSAHSTPS--TPADSSAH 741
Query: 112 ETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPS-PTDR 170
TPS P+ +S HS P++P D S TPS P D S TPS P D
Sbjct: 742 STPSTPA-------DSSAHS------TPSTPVDSSAHGTPS--TPADSSAHSTPSTPADS 786
Query: 171 STVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVE 230
S TPS P D + TPS P D TPS +P D S TPS +P D +
Sbjct: 787 SAHGTPS--TPVDSSAHSTPST--PVDSSAHGTPS--TPVDSSAHSTPS--TPVDSSAHG 838
Query: 231 TPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLP 277
TPS P D S TPS +P D S TPS +P D S TPS P
Sbjct: 839 TPS--TPVDSSAHSTPS--TPADSSAHSTPS--TPADSSAHGTPSTP 879
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 131/282 (46%), Gaps = 44/282 (15%)
Query: 3 TPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPN 62
TPS P+D S TPS P D S TPS +P D S TPS +P D S TPS
Sbjct: 755 TPSTPVDSSAHGTPS--TPADSSAHSTPS--TPADSSAHGTPS--TPVDSSAHSTPS--T 806
Query: 63 PPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDR 122
P D S TPS P D S TPS P D S TPS P+D + TPS P+
Sbjct: 807 PVDSSAHGTPS--TPVDSSAHSTPS--TPVDSSAHGTPS--TPVDSSAHSTPSTPA---- 856
Query: 123 ITEKTSEHSGDAQPAQ------PASPTDLSTVETPSLPNPPDRSTAETPS-PTDRSTVET 175
+S HS + PA P++P D S TPS P D S TPS P D S T
Sbjct: 857 ---DSSAHSTPSTPADSSAHGTPSTPVDSSAHSTPS--TPADSSAHSTPSTPVDSSAHST 911
Query: 176 PSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLP 235
PS P D + TPS P D TPS P+ D S TPS +P D + TPS
Sbjct: 912 PS--TPADSSAHGTPST--PVDSSAHGTPSTPA--DSSAHSTPS--TPADSSAHSTPS-- 961
Query: 236 NPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLP 277
P D S TPS +P D S TPS +P D S TPS P
Sbjct: 962 TPADSSAHSTPS--TPVDSSAHSTPS--TPADSSAHSTPSTP 999
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 136/308 (44%), Gaps = 57/308 (18%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
TPS P+D S TPS P D S TPS +P D S TPS +P D S TPS
Sbjct: 874 GTPSTPVDSSAHSTPS--TPADSSAHSTPS--TPVDSSAHSTPS--TPADSSAHGTPS-- 925
Query: 62 NPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLP----------NPLDRNTT 111
P D S TPS P D S TPS P D S TPS P P+D +
Sbjct: 926 TPVDSSAHGTPS--TPADSSAHSTPS--TPADSSAHSTPSTPADSSAHSTPSTPVDSSAH 981
Query: 112 ETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPS-PTDR 170
TPS P+ +S HS P++P D S TPS P D S TPS P D
Sbjct: 982 STPSTPA-------DSSAHS------TPSTPADSSAHSTPS--TPADSSAHSTPSTPVDS 1026
Query: 171 STVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVE 230
S TPS P D + TPS P D TPS +P D S TPS +P D +
Sbjct: 1027 SAHSTPS--TPADSSAHGTPST--PADSSAHSTPS--TPVDSSAHSTPS--TPADSSAHG 1078
Query: 231 TPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHPDLNIYLSI-- 288
TPS P D S TPS +P D S TPS +P D S TPS P N + I
Sbjct: 1079 TPS--TPADSSAHSTPS--TPADSSAHGTPS--TPADSSAHSTPSTPAGSSANGTVLILP 1132
Query: 289 ---ALSKF 293
ALS F
Sbjct: 1133 DGAALSTF 1140
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 77 PTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQP 136
P D S TPS P D S TPS P D + TPS +P D T
Sbjct: 603 PADSSAHSTPS--TPVDSSAHSTPS--TPADSSAHGTPS--TPVDSSAHGT--------- 647
Query: 137 AQPASPTDLSTVETPSLPNPPDRSTAETPS-PTDRSTVETPSLPNPTDLNTVETPSLPDP 195
P++P D S TPS P D S TPS P D S TPS P D + PS P
Sbjct: 648 --PSTPADSSAHGTPS--TPVDSSAHSTPSTPVDSSAHSTPS--TPVDSSAHGAPST--P 699
Query: 196 PDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRS 255
D TPS +P D S TPS +P D + TPS P D S TPS +P D S
Sbjct: 700 ADSSAHGTPS--TPVDSSAHGTPS--TPADSSAHSTPS--TPADSSAHSTPS--TPADSS 751
Query: 256 TAETPSLHSPTDRSTVETPSLP 277
TPS +P D S TPS P
Sbjct: 752 AHSTPS--TPVDSSAHGTPSTP 771
>sp|Q5XGC9|SRFB1_XENTR Serum response factor-binding protein 1 OS=Xenopus tropicalis
GN=srfbp1 PE=2 SV=1
Length = 535
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 107 DRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPP-DRSTAETP 165
D+ T + LP + + E+T+E+ QP A + VE P++ P +R E P
Sbjct: 184 DKGTEKALELPYVQENLPEQTAENK--EQP--KAQDVERPAVERPAVERPAVERPAVERP 239
Query: 166 SPTDRSTVETPSLPNPTDLNTVETPSLPDPP-DRITAETPSVPSP-TDRSTAETPSLHSP 223
+ +R VE P++ P VE P++ P +R E P+V P +R E P++ P
Sbjct: 240 A-VERPAVERPAVERP----AVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERP 294
Query: 224 -TDRNTVETPSLPNPPDQSTAETPSLHSP-TDRSTAETPSLHSP 265
+R VE P++ P E P++ P +R E+P++ P
Sbjct: 295 AVERPAVERPAVERP----AVERPAVERPAVERPVVESPAVERP 334
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 147 TVETPSLPNPP-DRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPP-DRITAETP 204
VE P++ P +R E P+ +R VE P++ P VE P++ P +R E P
Sbjct: 245 AVERPAVERPAVERPAVERPA-VERPAVERPAVERP----AVERPAVERPAVERPAVERP 299
Query: 205 SVPSP-TDRSTAETPSLHSP-TDRNTVETPSLPNPPDQS 241
+V P +R E P++ P +R VE+P++ PP +S
Sbjct: 300 AVERPAVERPAVERPAVERPAVERPVVESPAVERPPVES 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.121 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,898,992
Number of Sequences: 539616
Number of extensions: 8156847
Number of successful extensions: 60271
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 2766
Number of HSP's that attempted gapping in prelim test: 26444
Number of HSP's gapped (non-prelim): 15133
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 61 (28.1 bits)