Query psy6677
Match_columns 320
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Sat Aug 17 00:16:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ain_A Glycine betaine transpo 16.9 66 0.0023 30.6 2.5 39 281-319 267-305 (539)
2 2asw_A Hypothetical protein AF 15.6 1.2E+02 0.0041 16.6 2.5 18 301-318 34-51 (56)
3 1jhn_A Calnexin; jelly-roll, b 15.4 1.7E+02 0.0058 27.5 4.8 60 48-107 276-350 (424)
4 2wsw_A BCCT family betaine/car 15.4 91 0.0031 29.4 3.0 39 281-319 265-303 (509)
5 3dd7_B PHD, prevent HOST death 10.6 1.9E+02 0.0067 17.7 2.4 17 302-318 4-20 (23)
6 2dnx_A Syntaxin-12; snare, HAB 9.6 2E+02 0.0067 21.8 2.7 18 302-319 98-115 (130)
7 2jsh_A Appetite-regulating hor 9.2 13 0.00045 23.6 -3.3 14 298-311 13-26 (26)
8 4e6f_A Uncharacterized protein 8.3 1.2E+02 0.004 25.9 1.1 25 288-312 146-171 (181)
9 3vrd_A FCCA subunit, flavocyto 8.2 2.6E+02 0.0088 20.9 2.9 33 283-315 126-158 (174)
10 4ffl_A PYLC; amino acid, biosy 8.0 60 0.002 26.2 -0.8 21 288-308 343-363 (363)
No 1
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=16.90 E-value=66 Score=30.62 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=29.2
Q ss_pred CcchhhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHhh
Q psy6677 281 DLNIYLSIALSKFRRSTRDDRQEFGAVLQNFGAVLQNIL 319 (320)
Q Consensus 281 dlniylsialskfrrstrddrqefgavlqnfgavlqnil 319 (320)
++|+||.++|--|---.-.-.--+....|++|..+||+.
T Consensus 267 ~~N~~La~~Ll~fvli~GPT~fil~~~~~s~G~yl~nf~ 305 (539)
T 4ain_A 267 NANMVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFF 305 (539)
T ss_dssp GGHCCCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 578898888877665555555667778888888888864
No 2
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=15.62 E-value=1.2e+02 Score=16.62 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy6677 301 RQEFGAVLQNFGAVLQNI 318 (320)
Q Consensus 301 rqefgavlqnfgavlqni 318 (320)
..|||.+.+.|...+++|
T Consensus 34 ~dEi~~l~~~~n~m~~~l 51 (56)
T 2asw_A 34 ADEIGILAKSIERLRRSL 51 (56)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 468898888887776654
No 3
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=15.45 E-value=1.7e+02 Score=27.54 Aligned_cols=60 Identities=32% Similarity=0.649 Sum_probs=26.4
Q ss_pred CCCCCCccCCCCCCC-----CCCCCCc-----CCCCCCCCCCCCc--cC---CCCCCCCCCCCcccCCCCCCCCC
Q psy6677 48 SPTDWSTAETPSLPN-----PPDWSTA-----ETPSLPNPTDLST--VG---TPSLPNPTDLSTVETPSLPNPLD 107 (320)
Q Consensus 48 sptdwstaetpslpn-----ppdwsta-----etpslpnptdlst--vg---tpslpnptdlstvetpslpnpld 107 (320)
.|.||...|.+.+++ |-||... +.|-.+||..-.. .| -|-+.||.--..-.-|.++||--
T Consensus 276 KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~Y 350 (424)
T 1jhn_A 276 KPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNY 350 (424)
T ss_dssp CCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCCEEECTTC
T ss_pred CCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCCccCCCcc
Confidence 344555555444443 3456543 2445555544321 12 24444444434444444444433
No 4
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=15.41 E-value=91 Score=29.36 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=27.8
Q ss_pred CcchhhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHhh
Q psy6677 281 DLNIYLSIALSKFRRSTRDDRQEFGAVLQNFGAVLQNIL 319 (320)
Q Consensus 281 dlniylsialskfrrstrddrqefgavlqnfgavlqnil 319 (320)
++|+||.++|--|---.-.-.--+....|++|..+||+.
T Consensus 265 ~~N~~la~~Ll~fvli~GpT~fil~~~~~~~G~yl~nf~ 303 (509)
T 2wsw_A 265 DVRTYLSFLMLGWVFIVGGASFIVNYFTDSVGTLLMYMP 303 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 478999988876655444455556677788888888864
No 5
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=10.57 E-value=1.9e+02 Score=17.66 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6677 302 QEFGAVLQNFGAVLQNI 318 (320)
Q Consensus 302 qefgavlqnfgavlqni 318 (320)
+||.+++|-+|.-+.++
T Consensus 4 aEFaaIm~~hg~t~~~L 20 (23)
T 3dd7_B 4 AEFASLFDTLDSTNKEM 20 (26)
T ss_pred hHHHHHHHHHhHHHHHH
Confidence 69999999999877664
No 6
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.64 E-value=2e+02 Score=21.76 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy6677 302 QEFGAVLQNFGAVLQNIL 319 (320)
Q Consensus 302 qefgavlqnfgavlqnil 319 (320)
.+|-++|++|..+-+.+.
T Consensus 98 ~dF~~~L~~FQ~~Qr~~a 115 (130)
T 2dnx_A 98 NDFSAALNNFQAVQRRVS 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 579999999998876553
No 7
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=9.24 E-value=13 Score=23.62 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHH
Q psy6677 298 RDDRQEFGAVLQNF 311 (320)
Q Consensus 298 rddrqefgavlqnf 311 (320)
..+-|++|.+||+|
T Consensus 13 ~~~y~~yG~~Lqk~ 26 (26)
T 2jsh_A 13 GAQYQQHGRALXXX 26 (26)
T ss_dssp HHHCSCSSSCC---
T ss_pred HHHHHHHhHHhccC
Confidence 45667788888775
No 8
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with TBP-like fold,structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides ovatus}
Probab=8.30 E-value=1.2e+02 Score=25.93 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=16.6
Q ss_pred hhhhhhhhhchhhHHH-HHHHHHHHH
Q psy6677 288 IALSKFRRSTRDDRQE-FGAVLQNFG 312 (320)
Q Consensus 288 ialskfrrstrddrqe-fgavlqnfg 312 (320)
-...||||.|-|-..+ |..+.+.+|
T Consensus 146 r~~gKFRrkTIDr~d~iF~~~~~al~ 171 (181)
T 4e6f_A 146 RGLAKWRRKTVDFADDMFMDVAVAFG 171 (181)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhhhhhhhhHHHHHHHHHHHhc
Confidence 3457999999887654 455555444
No 9
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=8.23 E-value=2.6e+02 Score=20.89 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=23.1
Q ss_pred chhhhhhhhhhhhhchhhHHHHHHHHHHHHHHH
Q psy6677 283 NIYLSIALSKFRRSTRDDRQEFGAVLQNFGAVL 315 (320)
Q Consensus 283 niylsialskfrrstrddrqefgavlqnfgavl 315 (320)
..||...|..||.-.|........++..|...|
T Consensus 126 ~~yl~~~L~~~~~g~r~~~~~~~~~M~~~a~~L 158 (174)
T 3vrd_A 126 TPYLRYAIEDFRAERRPMEKKMASKLKELLKAE 158 (174)
T ss_dssp HHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCCCccchhhHHHHhhC
Confidence 468999999999888765444555666665544
No 10
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=8.01 E-value=60 Score=26.22 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=12.1
Q ss_pred hhhhhhhhhchhhHHHHHHHH
Q psy6677 288 IALSKFRRSTRDDRQEFGAVL 308 (320)
Q Consensus 288 ialskfrrstrddrqefgavl 308 (320)
-|+.|.+|.-+.-|.+||+||
T Consensus 343 eA~~k~~~al~~i~~~~g~~l 363 (363)
T 4ffl_A 343 ETGAKRCKGLSVLKERFGAVL 363 (363)
T ss_dssp HHHHHHHHHHHHHHHHHCCBC
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 355555665555666666553
Done!