Query psy6677
Match_columns 320
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Sat Aug 17 00:16:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y2oa1 a.238.1.3 (A:1-248) BA 42.8 7 0.00051 28.9 2.7 30 289-318 55-86 (248)
2 d1nn5a_ c.37.1.1 (A:) Thymidyl 23.8 12 0.00089 27.3 1.1 23 279-301 123-147 (209)
3 d2iy5a1 a.2.7.2 (A:15-84) Phen 23.7 18 0.0013 23.5 1.8 32 286-317 18-49 (70)
4 d1vi0a2 a.121.1.1 (A:78-194) H 10.5 1.1E+02 0.0081 18.7 3.2 32 288-319 26-57 (117)
5 d1p5qa1 a.118.8.1 (A:258-427) 9.7 71 0.0052 21.4 2.1 33 277-309 127-159 (170)
6 d3e9va1 d.370.1.1 (A:9-128) NG 9.1 97 0.0071 22.5 2.8 26 285-310 12-37 (120)
7 d1ku2a1 a.4.13.1 (A:273-332) S 8.8 70 0.0051 20.2 1.6 23 284-306 5-27 (60)
8 d2asxa1 a.274.1.1 (A:278-331) 8.1 1.2E+02 0.009 17.6 2.5 20 299-318 30-49 (54)
9 d1oqca_ a.24.15.1 (A:) Augment 7.7 1E+02 0.0074 20.8 2.2 29 287-315 20-48 (112)
10 d1t1ua2 c.43.1.3 (A:402-616) C 7.3 66 0.0048 24.5 1.1 34 287-320 181-214 (215)
No 1
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.80 E-value=7 Score=28.93 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=21.3
Q ss_pred hhhhhhhh--chhhHHHHHHHHHHHHHHHHHh
Q psy6677 289 ALSKFRRS--TRDDRQEFGAVLQNFGAVLQNI 318 (320)
Q Consensus 289 alskfrrs--trddrqefgavlqnfgavlqni 318 (320)
||.+|... .-.+-.++|.+|++||.++++|
T Consensus 55 al~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i 86 (248)
T d1y2oa1 55 ALVKMGELASESQGSKELGDVLFQMAEVHRQI 86 (248)
T ss_dssp HHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHHHHHH
Confidence 46666542 1224567999999999998876
No 2
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.85 E-value=12 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=11.0
Q ss_pred CCCcchhhhh--hhhhhhhhchhhH
Q psy6677 279 HPDLNIYLSI--ALSKFRRSTRDDR 301 (320)
Q Consensus 279 hpdlniylsi--alskfrrstrddr 301 (320)
-|||.|||.+ ..+.-|+..+.+|
T Consensus 123 ~PDl~i~Ld~~~e~~~~R~~~~~~~ 147 (209)
T d1nn5a_ 123 KPDLVLFLQLQLADAAKRGAFGHER 147 (209)
T ss_dssp CCSEEEEEECCHHHHHHC-----CT
T ss_pred CCceeeeecccHHHHhhhhcccccc
Confidence 3899999944 3333343333333
No 3
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]}
Probab=23.70 E-value=18 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=23.5
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q psy6677 286 LSIALSKFRRSTRDDRQEFGAVLQNFGAVLQN 317 (320)
Q Consensus 286 lsialskfrrstrddrqefgavlqnfgavlqn 317 (320)
++-.+.+++.-..+||.+||.++.-+-.-+.+
T Consensus 18 i~~~~k~l~~l~~eek~~~G~~lN~~K~~i~~ 49 (70)
T d2iy5a1 18 LTQEMKGLSALPLEERRKRGQELNAIKAALEA 49 (70)
T ss_dssp TTSTTSCTTTGGGCCTTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCCHHHHHHhhHHHHHHHHHHHH
Confidence 45566778888899999999988665544433
No 4
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=10.51 E-value=1.1e+02 Score=18.74 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=17.8
Q ss_pred hhhhhhhhhchhhHHHHHHHHHHHHHHHHHhh
Q psy6677 288 IALSKFRRSTRDDRQEFGAVLQNFGAVLQNIL 319 (320)
Q Consensus 288 ialskfrrstrddrqefgavlqnfgavlqnil 319 (320)
|.+..+|....+.|.++-.+...|-..+..|+
T Consensus 26 i~~~E~~~~~~~~~~~i~~~~~~~~~~~~~ii 57 (117)
T d1vi0a2 26 VTQLELRQSNLELRQKINEILKGYLNILDGIL 57 (117)
T ss_dssp HHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556566666655555554
No 5
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.65 E-value=71 Score=21.35 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=18.2
Q ss_pred CCCCCcchhhhhhhhhhhhhchhhHHHHHHHHH
Q psy6677 277 PNHPDLNIYLSIALSKFRRSTRDDRQEFGAVLQ 309 (320)
Q Consensus 277 pnhpdlniylsialskfrrstrddrqefgavlq 309 (320)
|+++++...|.....+..+.-..+++.|...++
T Consensus 127 P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 159 (170)
T d1p5qa1 127 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159 (170)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555555555554444443
No 6
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.05 E-value=97 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=13.8
Q ss_pred hhhhhhhhhhhhchhhHHHHHHHHHH
Q psy6677 285 YLSIALSKFRRSTRDDRQEFGAVLQN 310 (320)
Q Consensus 285 ylsialskfrrstrddrqefgavlqn 310 (320)
||.--|.++.|-.|..-+.|++.|+|
T Consensus 12 Fl~~ll~~~~~l~~~~~~~F~~~L~~ 37 (120)
T d3e9va1 12 FLSSLLRTRGCVSEQRLKVFSGALQE 37 (120)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34334555555555555555555554
No 7
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=8.82 E-value=70 Score=20.24 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.1
Q ss_pred hhhhhhhhhhhhhchhhHHHHHH
Q psy6677 284 IYLSIALSKFRRSTRDDRQEFGA 306 (320)
Q Consensus 284 iylsialskfrrstrddrqefga 306 (320)
+++.=.++|++|..|.-.|++|.
T Consensus 5 vH~~e~i~rv~r~~~~l~qe~gR 27 (60)
T d1ku2a1 5 VHMVETINKLSRTARQLQQELGR 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHHHHHHhCC
Confidence 45666789999999999999884
No 8
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.12 E-value=1.2e+02 Score=17.57 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy6677 299 DDRQEFGAVLQNFGAVLQNI 318 (320)
Q Consensus 299 ddrqefgavlqnfgavlqni 318 (320)
..+.|||.+-+.|....++|
T Consensus 30 ~~~dEig~L~~~fn~M~~~l 49 (54)
T d2asxa1 30 NRADEIGILAKSIERLRRSL 49 (54)
T ss_dssp TCCSHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 34569999999998887765
No 9
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.74 E-value=1e+02 Score=20.77 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=20.2
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHHHHHHH
Q psy6677 287 SIALSKFRRSTRDDRQEFGAVLQNFGAVL 315 (320)
Q Consensus 287 sialskfrrstrddrqefgavlqnfgavl 315 (320)
+||+.--.+-+.++++.+.+.+.+|+.+|
T Consensus 20 ~ia~~yp~~pt~~~~~~~~~fi~~l~~~l 48 (112)
T d1oqca_ 20 TLAAYYPDMPTPEQQQDMAQFIHIFSKFY 48 (112)
T ss_dssp HHHHTSCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCcCCCCHHHHHHHHHHHHHhChhC
Confidence 34444334557788899999888887664
No 10
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.29 E-value=66 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=26.8
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHHHHHHHHHhhC
Q psy6677 287 SIALSKFRRSTRDDRQEFGAVLQNFGAVLQNILK 320 (320)
Q Consensus 287 sialskfrrstrddrqefgavlqnfgavlqnilk 320 (320)
.+.++-|+.+...+-++|+..|+..-.-+++||+
T Consensus 181 ~f~iss~~s~~~t~~~~f~~~L~~al~~m~~ll~ 214 (215)
T d1t1ua2 181 TFCISSFHSCKETSSVEFAEAVGASLVDMRDLCS 214 (215)
T ss_dssp EEEEEEETTSTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCCCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 4556777776666789999999988888888874
Done!