RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6677
(320 letters)
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 50.7 bits (121), Expect = 6e-07
Identities = 56/278 (20%), Positives = 77/278 (27%), Gaps = 32/278 (11%)
Query: 15 TPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAE-TPS 73
P+ P P +TA P+ P + L P S +E S
Sbjct: 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
Query: 74 LPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGD 133
LP+P D + L L +P+ P P T+ P+ P P + G
Sbjct: 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLP--PPTSAQPTAPPPPPGPPPPSLPLGGS 2855
Query: 134 AQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLP 193
P PP RS A P+ R V + P + T S
Sbjct: 2856 VAPGGDVR------------RRPPSRSPAAKPAAPARPPVRRLARPAVSR----STESFA 2899
Query: 194 DPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTD 253
PPD E P P + P + P P PP T + P+
Sbjct: 2900 LPPD--QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957
Query: 254 RSTA-----------ETPSLHSPTDRSTVETPSLPNHP 280
P P + E P+ P
Sbjct: 2958 AVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995
Score = 49.9 bits (119), Expect = 1e-06
Identities = 58/300 (19%), Positives = 83/300 (27%), Gaps = 25/300 (8%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
+ + + SLP+P D + +A A +P+ P P S T P
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841
Query: 62 NPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTD 121
P + G P S P+ P P++ T+
Sbjct: 2842 PPGPPPPSLPLG-----GSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896
Query: 122 RITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSP----TDRSTVETPS 177
+ QP P P P P PP P TD + PS
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
Query: 178 LPNPTDLN------TVETPSLPDPPDRITAETPSVPSPTDR--------STAETPSLHSP 223
P V P P + E P+ +P S A + +LH
Sbjct: 2957 GAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEE 3016
Query: 224 TDRNTVETPSLPNPPD--QSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHPD 281
TD V PPD + + S ++RS E P P P+
Sbjct: 3017 TDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPE 3076
Score = 46.9 bits (111), Expect = 1e-05
Identities = 52/289 (17%), Positives = 80/289 (27%), Gaps = 16/289 (5%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPS---VASPTDWSTAETPSLPSPTDWSTAETP 58
+ P P P PPD + P + + P++P P P
Sbjct: 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658
Query: 59 SLPNPPDWSTAETPSLPNPTDLSTVGTPSLPNP----TDLSTVETPSLPNPLDRNTTETP 114
+ P + + + + T L+ P P P
Sbjct: 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP-PTPEPAPHALVS 2717
Query: 115 SLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLP-NPPDRSTAETPS-PTDRST 172
+ P P + + + A PA PA P +T P+ P PP + P+ P +
Sbjct: 2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA 2777
Query: 173 VETPSLPNPTDLN-TVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVET 231
L P + + SLP P D + A +P+ P T
Sbjct: 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP-----PT 2832
Query: 232 PSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHP 280
+ P P P P RS P+ P P
Sbjct: 2833 SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP 2881
Score = 45.7 bits (108), Expect = 3e-05
Identities = 56/272 (20%), Positives = 78/272 (28%), Gaps = 18/272 (6%)
Query: 16 PSLPNPPDRSTAETPSVASPTDWSTAETPSLP-SPTDWSTAETPSLPNPPDWSTAETPSL 74
P P P A T P + P P P P PPD + A P
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD-THAPDPPP 2628
Query: 75 PNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDA 134
P+P+ P+ P P P D S P R+ S
Sbjct: 2629 PSPS-------PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681
Query: 135 QPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPD 194
+P + A+ + ++ + + P PP + P TP P P
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL---VSATPLPPGPAAARQASPALPAA 2738
Query: 195 PPDRITAETPSVPS-----PTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAE-TPSL 248
P P+ P +TA P+ P L P S +E SL
Sbjct: 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
Query: 249 HSPTDRSTAETPSLHSPTDRSTVETPSLPNHP 280
SP D + L +P+ P P
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPP 2830
Score = 44.9 bits (106), Expect = 4e-05
Identities = 47/271 (17%), Positives = 66/271 (24%), Gaps = 8/271 (2%)
Query: 19 PNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPT 78
P+ P +S V D PS P + P P+P P P
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
Query: 79 DLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQ 138
P+ + + + P + + TS P
Sbjct: 2649 PERPRDDPAPGRVSRPRRARRLGRA-AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707
Query: 139 PASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLP-NPTDLNTVETPSLPDPPD 197
P TP P P A P + P+ P P P P
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767
Query: 198 RITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTA 257
P R T + S + SLP+P D + L A
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSES------RESLPSPWDPADPPAAVLAPAAALPPA 2821
Query: 258 ETPSLHSPTDRSTVETPSLPNHPDLNIYLSI 288
+P+ P S T P L +
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
Score = 29.9 bits (67), Expect = 2.0
Identities = 49/239 (20%), Positives = 69/239 (28%), Gaps = 23/239 (9%)
Query: 48 SPTDWSTAETPSLPNPPDWSTAETPSLPNPTDL--STVGTPSLPN-----------PTDL 94
P A P PPD PS P L VG P P +D
Sbjct: 2488 FPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDD 2547
Query: 95 STVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLP 154
+ P LP P S+P P R + SE + ++ +P +P + P
Sbjct: 2548 AGDPPPPLP-PAAPPAAPDRSVPPP--RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD 2604
Query: 155 -NPPDRSTAETPSPTDRSTVETPSL---PNPTDLNTVETPSLPDPPDRITAETPSVPSPT 210
P +P P D + P P + + P++P P P S
Sbjct: 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664
Query: 211 DRSTAET--PSLHSPTDRNTVETPSLPNPPDQSTAETPSL-HSPTDRSTAETPSLHSPT 266
R+ SP R S A+ P +P A + P
Sbjct: 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPP 2723
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 40.5 bits (95), Expect = 0.001
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 15/155 (9%)
Query: 123 ITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPT 182
+T+K + SG P Q P P+ P + A +PSP+ S PS P
Sbjct: 362 LTQKGDDASGGRGPKQHIKPV----FTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSA 417
Query: 183 DLNTVETPSLP-DPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQS 241
P++ DPP + PS R P + + PS P
Sbjct: 418 TQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP---- 473
Query: 242 TAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSL 276
+ +++T + T + L
Sbjct: 474 ------IQEKAEQATGNIKEAPTGTQKEIFTEEDL 502
Score = 31.3 bits (71), Expect = 0.71
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
Query: 20 NPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTD 79
P S A S + + A+ + S T + +PP PS
Sbjct: 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447
Query: 80 LSTVGTPSLPNPTDLSTVETPSLPNPL----DRNTTETPSLPSPTDR 122
P + PS P+ ++ T P+ T +
Sbjct: 448 RPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQK 494
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 39.0 bits (90), Expect = 0.003
Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 9/208 (4%)
Query: 11 STVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAE 70
T P+ P+ P ST T S A PT + T S P D S + P S
Sbjct: 445 KTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTP 504
Query: 71 TPSLPN---PTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKT 127
+ PN PT T TP+ +PT + T + +P T T S+P+ T +
Sbjct: 505 AVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSP----PTGTTSVPNATSPQVTEE 560
Query: 128 SEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTV 187
S + P ++P+ L++ T T++ P S S N T +
Sbjct: 561 SPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRS--NSTSTTPL 618
Query: 188 ETPSLPDPPDRITAETPSVPSPTDRSTA 215
T + P + IT ETPSVPS T ST
Sbjct: 619 LTSAHPTGGENITEETPSVPSTTHVSTL 646
Score = 35.5 bits (81), Expect = 0.033
Identities = 57/293 (19%), Positives = 97/293 (33%), Gaps = 21/293 (7%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
P S + + TP+ SPT T++TP+ SPT T +
Sbjct: 481 TLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTAT 540
Query: 62 NPPDWSTAETPSLPNPTDLSTVGTPSLPN------PTDLSTVETPSLPNPLDRNTTETPS 115
+PP T P+ +P + P+ L++ T T++ P
Sbjct: 541 SPPT-GTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPG 599
Query: 116 LPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPN----------PPDRSTAETP 165
+PS + S + + + + T ETPS+P+ P +T++
Sbjct: 600 IPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVS 659
Query: 166 SPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTD 225
P + ST P + T+ + P P P+V S ++ + T T
Sbjct: 660 GPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTL 719
Query: 226 RNTVETPS----LPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETP 274
+ + P +T P S R S T ++TV P
Sbjct: 720 MASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVP 772
Score = 34.0 bits (77), Expect = 0.100
Identities = 50/249 (20%), Positives = 86/249 (34%), Gaps = 21/249 (8%)
Query: 29 TPSVASPTDWSTAETPSLPSPTDWSTAET--PSLPNPPDWSTAETPSLPNPTDLSTVGTP 86
V + TPSLP + T T P+ P +++ P +PT +T TP
Sbjct: 438 LVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATP 497
Query: 87 SLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLS 146
+ +PT T TP+ +P + T++TP+ SPT + T+ A+
Sbjct: 498 NATSPTPAVT--TPNATSPTTQKTSDTPNATSPTPIVIGVTTT----------ATSPPTG 545
Query: 147 TVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSV 206
T P+ +P + + PS+ L + T T++ P +
Sbjct: 546 TTSVPNATSPQVTEESPVNNTNTPVVTSAPSV-----LTSAVTTGQHGTGSSPTSQQPGI 600
Query: 207 PSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPT 266
PS + + + +P + T + T PS + S P S
Sbjct: 601 PSSSHSTPRSNSTSTTPLLTSAHPTGG--ENITEETPSVPSTTHVSTLSPGPGPGTTSQV 658
Query: 267 DRSTVETPS 275
+ S
Sbjct: 659 SGPGNSSTS 667
Score = 32.1 bits (72), Expect = 0.52
Identities = 52/226 (23%), Positives = 79/226 (34%), Gaps = 31/226 (13%)
Query: 53 STAETPSLPNPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTE 112
T P+ P+ P ST T S +PT + GT S P D S + P + T
Sbjct: 445 KTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTP 504
Query: 113 TPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRST 172
+ P+ T T+KTS+ SPT + T + +PP T P+ T
Sbjct: 505 AVTTPNATSPTTQKTSDTPN------ATSPTPIVIGVTTTATSPP-TGTTSVPNATSPQV 557
Query: 173 VETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETP 232
E + N PS+ ++A T H T + P
Sbjct: 558 TEESPVNNTNTPVVTSAPSVL-------------------TSAVTTGQHGTGSSPTSQQP 598
Query: 233 SLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPN 278
+P+ + + +P S T + T ETPS+P+
Sbjct: 599 GIPSSSHSTPRSNSTSTTPLLTSAHPTGG-----ENITEETPSVPS 639
Score = 31.3 bits (70), Expect = 0.79
Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 10/160 (6%)
Query: 111 TETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDR 170
+ H A P P+ P + P STA+ S T
Sbjct: 425 APDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPAST---------GPTVSTADPTSGTPT 475
Query: 171 STVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVE 230
T + + + + + + TP+ SPT + T++TP+ SPT
Sbjct: 476 GTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGV 535
Query: 231 TPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRST 270
T + +PP T P+ SP + + ++P S
Sbjct: 536 TTTATSPP-TGTTSVPNATSPQVTEESPVNNTNTPVVTSA 574
Score = 31.3 bits (70), Expect = 0.83
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 146 STVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPS 205
T P+ P+ P ST T S D P+ PT + P P R T+ TP+
Sbjct: 445 KTTAVPTTPSLPPASTGPTVSTAD------PTSGTPTGTTSSTLPEDTSPTSRTTSATPN 498
Query: 206 VPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSP 265
SPT TP+ SPT + T +TP+ +P T + SP T P+ SP
Sbjct: 499 ATSPT--PAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP-TGTTSVPNATSP 555
Query: 266 TDRSTVETPSLPNH 279
+
Sbjct: 556 QVTEESPVNNTNTP 569
Score = 29.8 bits (66), Expect = 2.1
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 164 TPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSP 223
+ V T P P TA+ P+ +PT +++ P SP
Sbjct: 430 KSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTAD-PTSGTPTGTTSSTLPEDTSP 488
Query: 224 TDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHP 280
T R T TP+ +P TP+ SPT + T++TP+ SPT T + + P
Sbjct: 489 TSRTTSATPNATSPT--PAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP 543
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 38.2 bits (89), Expect = 0.006
Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 4/275 (1%)
Query: 11 STVETPSLPNPPDRSTAETPSVASPTDWS---TAETPSLPSPTDWSTAETPSLPNPPDWS 67
E P+ P P + A S WS A + + P PP
Sbjct: 63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122
Query: 68 TAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKT 127
A P P P + P P ++ + + + E+T
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182
Query: 128 SEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTV 187
+ P S + P + P ++A +P+P + + + +D ++
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242
Query: 188 ETPSLPDPPDRITAETPSVPSPTDRSTAE-TPSLHSPTDRNTVETPSLPNPPDQSTAETP 246
E+ P+ P E + + + S P S + +
Sbjct: 243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSS 302
Query: 247 SLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHPD 281
P S + S S + S+ T S
Sbjct: 303 PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR 337
Score = 30.1 bits (68), Expect = 2.0
Identities = 28/152 (18%), Positives = 40/152 (26%), Gaps = 6/152 (3%)
Query: 134 AQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLP 193
A + T P P + +PT + P+ P T PS P
Sbjct: 56 VAGAAACDRFEPPTGPPPG-PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP 114
Query: 194 DPPDRIT--AETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETP---SL 248
DPP A P P+P P + S A + +L
Sbjct: 115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174
Query: 249 HSPTDRSTAETPSLHSPTDRSTVETPSLPNHP 280
+ TA PS + + P
Sbjct: 175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 35.7 bits (83), Expect = 0.035
Identities = 34/209 (16%), Positives = 58/209 (27%), Gaps = 7/209 (3%)
Query: 11 STVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAE 70
S P A + A+P + A +P + S A P + P +
Sbjct: 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAA--AAPAEASAAPAPGVAAPEH--HPK 655
Query: 71 TPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEH 130
++P+ +D + P+ P P+ P+P T +
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPA-PAAPAAPAGAAPAQPAPAPAATPPAGQA 714
Query: 131 SGDA--QPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVE 188
A P + S +P PP+ P+ P+
Sbjct: 715 DDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774
Query: 189 TPSLPDPPDRITAETPSVPSPTDRSTAET 217
PS P + + + DR AE
Sbjct: 775 PPSPPSEEEEMAEDDAPSMDDEDRRDAEE 803
Score = 31.1 bits (71), Expect = 0.90
Identities = 34/225 (15%), Positives = 48/225 (21%), Gaps = 13/225 (5%)
Query: 22 PDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTDLS 81
P A +P E + P+ A P + AE + P P +
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
Query: 82 TVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPAS 141
P D S P+ P P + PA
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKA----GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705
Query: 142 PTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITA 201
P A+ S + + LP P P P A
Sbjct: 706 AAT-PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP--------PEPDDPPDPAGAPA 756
Query: 202 ETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETP 246
+ P P+P + SP D
Sbjct: 757 QPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDA 801
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 35.2 bits (81), Expect = 0.041
Identities = 35/163 (21%), Positives = 52/163 (31%), Gaps = 10/163 (6%)
Query: 1 MKTPSVPIDLSTVETPSLPNPPDRSTAETPS---VASPTDWSTAETPSLPSPTDWSTAET 57
M+ P + S TPS T+ TPS + T S ++ SL S + +T +
Sbjct: 457 MEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEASLISKSTGNTHKH 516
Query: 58 P------SLPNPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTT 111
+LP P S + +L + + S S+P +
Sbjct: 517 STPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPLVRVFDIH 576
Query: 112 ETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLP 154
S T T+E P SP S TP L
Sbjct: 577 LRASTTKGR-HSTPSTNEKKKRLLKRSPLSPPKESVATTPRLN 618
Score = 33.7 bits (77), Expect = 0.14
Identities = 32/170 (18%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 90 NPTDLSTVETPSLPNPLDRNTTETPSLPS-PTDRITEKTSEHSGDAQPAQPASPTDLSTV 148
P + PS P+ + T + PS K+S Q A S + +T
Sbjct: 459 PPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLS----QEASLISKSTGNTH 514
Query: 149 ETPSLPNPPDRSTAETPSPTDRSTVETPSLP----NPTDLNTVETPSLPDPPDRITAETP 204
+ + R P S +L N + + +P + +
Sbjct: 515 K-----HSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPL 569
Query: 205 SVPSPTDRSTAETPSLHSPTDRNTVETPSLPN----PPDQSTAETPSLHS 250
+ T HS N + L PP +S A TP L+S
Sbjct: 570 VRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLNS 619
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 35.0 bits (81), Expect = 0.041
Identities = 28/134 (20%), Positives = 40/134 (29%), Gaps = 5/134 (3%)
Query: 98 ETPSLPNPLD-----RNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPS 152
E P+ PLD + T S S + S D + P P+ S E PS
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 153 LPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDR 212
P+ A + +D S NP+ P P T P+
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265
Query: 213 STAETPSLHSPTDR 226
+T + D
Sbjct: 266 ATPAPIGGITLDDD 279
Score = 33.5 bits (77), Expect = 0.11
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 5/125 (4%)
Query: 139 PASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDR 198
+ + + D ++A P S P D ++ SLP P
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218
Query: 199 ITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPN-----PPDQSTAETPSLHSPTD 253
++TP + + + P +P + P L P +T + D
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278
Query: 254 RSTAE 258
+ A+
Sbjct: 279 DAIAK 283
Score = 33.5 bits (77), Expect = 0.14
Identities = 26/131 (19%), Positives = 40/131 (30%)
Query: 14 ETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPS 73
E P+ P D + + +D S + P+ S + S P S E PS
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 74 LPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGD 133
P+ + L + + S + P P + T K + S
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265
Query: 134 AQPAQPASPTD 144
A PA T
Sbjct: 266 ATPAPIGGITL 276
Score = 31.2 bits (71), Expect = 0.58
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Query: 7 PIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPP-- 64
P + + + S + P S P D S+ SLP P
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218
Query: 65 DWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSP 119
S PS +PT+ S P+ P P + V S P + + TP+
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Score = 29.7 bits (67), Expect = 2.1
Identities = 19/109 (17%), Positives = 31/109 (28%)
Query: 174 ETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPS 233
E P+ P D + D + P+ S + S P+ + E PS
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 234 LPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHPDL 282
P+ A + S + P + P + P L
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPL 254
Score = 28.1 bits (63), Expect = 6.9
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 12/132 (9%)
Query: 70 ETPSLPNPTD-----LSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRIT 124
E P+ P D T S + + P+ ++ PS PSP + +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 125 EKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDL 184
+ + P +P+ + P P P + P T
Sbjct: 206 S-------PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258
Query: 185 NTVETPSLPDPP 196
T + S P
Sbjct: 259 PTPPSASATPAP 270
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 34.1 bits (78), Expect = 0.11
Identities = 43/223 (19%), Positives = 67/223 (30%), Gaps = 20/223 (8%)
Query: 81 STVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTD-----RITEKTSEHSGDAQ 135
+ V LP + S+ N D + + S S +I S Q
Sbjct: 25 AFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKLFQ 84
Query: 136 PAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDP 195
A P S T S + + + + SP S PS + ++ P
Sbjct: 85 RRNSAGPITHSPSAT-SSTSSLNSNDGDQFSPASDSLSFNPSSTQ-SRKDSGPGDGSP-- 140
Query: 196 PDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRS 255
+ P ST T TD N + P +S E PSL S +
Sbjct: 141 -----VQKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGA---PNARSRKEIPSLGSQS--M 190
Query: 256 TAETPSLHSPTDRSTVETP-SLPNHPDLNIYLSIALSKFRRST 297
+P S S P+ + + S ++ F S+
Sbjct: 191 QLPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSS 233
Score = 30.6 bits (69), Expect = 1.2
Identities = 52/311 (16%), Positives = 91/311 (29%), Gaps = 41/311 (13%)
Query: 11 STVETPSLPNPPDR--STAETPSVASPTDWSTAETPSLPSPTDWST-----AETPSLPNP 63
S PP R S+ + D + S S ++ + S P
Sbjct: 23 SDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKL 82
Query: 64 PDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRI 123
+ P +P+ S+ + + + S NP S D
Sbjct: 83 FQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQ--------SRKDSG 134
Query: 124 TEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTD 183
S P P+S ST T D + + +P RS E PS
Sbjct: 135 PGDGSPVQKRKNPLLPSS----STHGTHPPIVFTDNNGSHAGAPNARSRKEIPS------ 184
Query: 184 LNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTA 243
++ LP P R + + PS+ + ++ PS P S+
Sbjct: 185 -LGSQSMQLPSPHFRQKFSSSDTSNGF-----SYPSIRKNSRHSSNSMPSFP----HSST 234
Query: 244 ETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHPDLNIY---LSIALSKFRRSTR-D 299
+ S +P+ S+ + IY LS +F+ +
Sbjct: 235 AVLLKRHSGSSGASLISSNITPS--SSNSEAMSTSSKRPYIYPALLSRVAVEFKMRLQLG 292
Query: 300 DRQEFGAVLQN 310
D ++ G + ++
Sbjct: 293 DHKKDGLLYRD 303
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 34.0 bits (77), Expect = 0.12
Identities = 51/234 (21%), Positives = 73/234 (31%), Gaps = 13/234 (5%)
Query: 52 WSTAETPSLPNPPDWSTAETPSLPNPT----DLSTVGTPSLPNPTDLST-VETPSLPNPL 106
W+ P + D+ + + +PT V P P P D T ET + P
Sbjct: 236 WTRELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEPQ 295
Query: 107 DRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPS 166
T ET +P + E E + Q QP S T +T P+ P
Sbjct: 296 PTQTVETKPTSAPESTVEENLPEINQPTQAVQPTSETISTTPVEPTDQLKPKEVDQIQEE 355
Query: 167 PTDRSTVETPSLPNPT-DLNTVETPSLPD-PPDRITAETPSVPSPTDRSTAETPSLHSPT 224
+E LP DL + L + + + P + A L PT
Sbjct: 356 LKKTKEIEVEELPTKKNDLVEINFDDLEELKFELVQTNQEKEPEKAVENWATDYQLDEPT 415
Query: 225 DRNT----VETPSLPNP--PDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVE 272
N E P DQ+T E + + E PS+ S V
Sbjct: 416 QSNIDWYKQEDPKDLEQLVQDQATLEITEENQISPEPVEEQPSVESTAPEDQVV 469
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 32.6 bits (75), Expect = 0.27
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 118 SPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRS----TV 173
+P ++ A PA + P + P L R TA+ R+
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111
Query: 174 ETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAET 217
E + P + E + A P VP+ + A+
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 32.8 bits (75), Expect = 0.31
Identities = 22/159 (13%), Positives = 40/159 (25%), Gaps = 8/159 (5%)
Query: 29 TPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTDLSTVGTPSL 88
TP +P + S + ++ + + +L + + + P +
Sbjct: 647 TPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAP---PPV 703
Query: 89 PNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTV 148
P+P D E + SE Q A
Sbjct: 704 PDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQ 763
Query: 149 ETPSLPNPPDRSTAETPSPTDRSTVETPSLP---NPTDL 184
S T+ T+ + V S +P DL
Sbjct: 764 SPASTTALTQ--TSSEVQDTELNLVLLSSGSITGHPLDL 800
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 32.1 bits (74), Expect = 0.36
Identities = 18/133 (13%), Positives = 31/133 (23%), Gaps = 9/133 (6%)
Query: 134 AQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLP 193
A P +P V P P P T + L
Sbjct: 385 AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQ-----GATKAK 439
Query: 194 DPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTD 253
+ V S +R + P+ + + + + + +P
Sbjct: 440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
Query: 254 -RSTAE---TPSL 262
+ E TP L
Sbjct: 500 LKKALEHEKTPEL 512
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 31.9 bits (73), Expect = 0.44
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
SVP+D ST P+ + A +PT+ T + P+P P
Sbjct: 158 SGQSVPLDTSTTTDPA----TTPAPAAPVD-TTPTNSQTPAVATAPAPAVDPQQNAVVAP 212
Query: 62 NPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETP-SLPNPL 106
+ + TA TP+ P P PTD + V TP + PN L
Sbjct: 213 SQANVDTAATPA-PAAPATPDGAAPL---PTDQAGVSTPAADPNAL 254
Score = 31.5 bits (72), Expect = 0.50
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 105 PLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAET 164
PLD +TT P+ + T +S A +P P+ + TA T
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222
Query: 165 PSPTDRSTVETPSLPNPTDLNTVETP 190
P+P +T + + P PTD V TP
Sbjct: 223 PAPAAPATPDGAA-PLPTDQAGVSTP 247
Score = 31.2 bits (71), Expect = 0.61
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 118 SPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPS 177
S + + PA + T T S + A P+P
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNS----QTPAVATAPAPAVDPQQNAVV 210
Query: 178 LPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETP 218
P+ +++T TP P + P PTD++ TP
Sbjct: 211 APSQANVDTAATP----APAAPATPDGAAPLPTDQAGVSTP 247
Score = 30.4 bits (69), Expect = 1.2
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 129 EHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVE 188
+ S L T T P + +PT+ T + P P
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207
Query: 189 TPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETP 232
P + TA TP+ +P A PTD+ V TP
Sbjct: 208 AVVAPSQANVDTAATPAPAAPATPDGAAP----LPTDQAGVSTP 247
Score = 30.0 bits (68), Expect = 1.8
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 70 ETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSE 129
+T + +P P PT+ T + P P PS + T T
Sbjct: 165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPA 224
Query: 130 HSGDAQP-AQPASPTDLSTVETP 151
+ A P PTD + V TP
Sbjct: 225 PAAPATPDGAAPLPTDQAGVSTP 247
Score = 29.6 bits (67), Expect = 2.4
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 80 LSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQP 139
LS S+P T +T + + P P T + +P T
Sbjct: 154 LSQNSGQSVPLDTS-TTTDPATTPAPAAPVDTTPTNSQTPAVA-TAPAPAVDPQQNAVVA 211
Query: 140 ASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETP 176
S ++ T TP+ P P P PTD++ V TP
Sbjct: 212 PSQANVDTAATPA-PAAPATPDGAAPLPTDQAGVSTP 247
Score = 28.1 bits (63), Expect = 6.3
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 182 TDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQS 241
T + + P P +T S T P V P+ +
Sbjct: 165 DTSTTTDPATTPAPAA--PVDTTPTNSQTPAVATAPAPAVDPQQNAVVA----PSQANVD 218
Query: 242 TAETPSLHSPTDRSTAETPSLHSPTDRSTVETP 274
TA TP+ +P A PTD++ V TP
Sbjct: 219 TAATPAPAAPATPDGAAP----LPTDQAGVSTP 247
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 31.2 bits (70), Expect = 0.68
Identities = 23/140 (16%), Positives = 39/140 (27%)
Query: 8 IDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWS 67
I+L + P+ T+ P P P T+ P+
Sbjct: 15 INLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAP 74
Query: 68 TAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKT 127
T +P P+P + P+ + T+ + +P D T
Sbjct: 75 TPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAA 134
Query: 128 SEHSGDAQPAQPASPTDLST 147
S+ A Q + P T
Sbjct: 135 SKKPDPAAHTQHSPPPFAYT 154
Score = 30.9 bits (69), Expect = 0.97
Identities = 19/117 (16%), Positives = 29/117 (24%)
Query: 3 TPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPN 62
T +L T P+P P T+ P T +
Sbjct: 24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFD 83
Query: 63 PPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSP 119
P P+P + P+ + T + P D T+ P P
Sbjct: 84 PAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDP 140
Score = 29.3 bits (65), Expect = 2.8
Identities = 21/144 (14%), Positives = 32/144 (22%), Gaps = 10/144 (6%)
Query: 25 STAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTDLSTVG 84
A + + T+ P P P+P T+ P+ T
Sbjct: 18 IIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPA 77
Query: 85 TPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTD 144
+P P+P P + T H A
Sbjct: 78 ASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPA---------- 127
Query: 145 LSTVETPSLPNPPDRSTAETPSPT 168
+ S P T +P P
Sbjct: 128 DAGTSAASKKPDPAAHTQHSPPPF 151
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.9 bits (70), Expect = 1.0
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 142 PTDLSTVETPSLPNP---PDRSTAETPSPT--DRSTVETPSLPNPTDLNTVETPSLPDPP 196
P +L+ +E +P P P + TA PSP + P ++ E P
Sbjct: 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATP 409
Query: 197 DRITAETPSVPSPTDRSTAE-TPSLHSPTDRNTVETPSLPNPPDQSTAETP 246
+ + P P +A P D TP P ++
Sbjct: 410 PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460
Score = 29.0 bits (65), Expect = 3.4
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 5 SVPIDLSTVETPSLPNP---PDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
+P++L+ +E +P P P + TA PS PT + + P + + E
Sbjct: 348 QLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTP-APSTRPKAAAAANIPPKEPVRET 406
Query: 62 NPPDWSTAETPSLPNPTDLSTV-GTPSLPNPTDLSTVETPSLPNP 105
P + P P + P D TP P
Sbjct: 407 ATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451
Score = 28.6 bits (64), Expect = 5.0
Identities = 29/132 (21%), Positives = 36/132 (27%), Gaps = 26/132 (19%)
Query: 91 PTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVET 150
P +L+ +E +P P + T + PSP PA P +
Sbjct: 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVR------------PTPAPSTRPKAAAAANI 397
Query: 151 PSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPT 210
P P P R TA TP P V P P P A P P
Sbjct: 398 P--PKEPVRETA-TPPPVPPRPVAPPVPHTP-----------ESAPKLTRAAIPVDEKPK 443
Query: 211 DRSTAETPSLHS 222
A
Sbjct: 444 YTPPAPPKEEEK 455
Score = 27.9 bits (62), Expect = 8.9
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 8/114 (7%)
Query: 159 RSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDP--PDRITAETPSVPSPTDRSTAE 216
R+T+ P + + +E +P P T + P P P + P + + E
Sbjct: 342 RTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE 401
Query: 217 ------TPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHS 264
TP P + + P + A P P A
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEK 455
Score = 27.9 bits (62), Expect = 9.5
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 3/100 (3%)
Query: 181 PTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQ 240
P +L +E +P P + T + PSP + A + + N +
Sbjct: 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATP 409
Query: 241 STAETPSLHSPTD---RSTAETPSLHSPTDRSTVETPSLP 277
+ P S + P D TP P
Sbjct: 410 PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 30.9 bits (70), Expect = 1.1
Identities = 28/156 (17%), Positives = 41/156 (26%), Gaps = 11/156 (7%)
Query: 15 TPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPP--DWSTAETP 72
P P + T A P E + P D + L PP +++ +
Sbjct: 127 DDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY 186
Query: 73 SLPNPTDLSTVGTPSLPNPTDLSTVETPSLP-NPLDRNTTETPSLPSPTDRITEKTSEHS 131
+ D + P + R+ T+ P P P + H
Sbjct: 187 APEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRP-EPPPG-------AGHV 238
Query: 132 GDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSP 167
P P PS P P A P P
Sbjct: 239 HRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGP 274
Score = 29.8 bits (67), Expect = 2.4
Identities = 38/196 (19%), Positives = 44/196 (22%), Gaps = 34/196 (17%)
Query: 91 PTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQP-----------AQP 139
D S E P P T P LP P R E D +P A+P
Sbjct: 87 TVDPSAGEPA--PPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARP 144
Query: 140 ASPTDLSTVETPSLPNPPDR-----------STAETPSPTDRSTVETPSLPNPTDLNTVE 188
A P E + P D A SP + +
Sbjct: 145 AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEY 204
Query: 189 TPSLP---------DPPDRITAETP-SVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPP 238
D P R + P P PS P P
Sbjct: 205 DQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPL 264
Query: 239 DQSTAETPSLHSPTDR 254
A P PT R
Sbjct: 265 AAQPAPAPGPGEPTAR 280
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 30.4 bits (69), Expect = 1.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 267 DRSTVETPSLPNHPDLNIYLSIALSKFRR 295
D E P LP PDL IYL +L R
Sbjct: 114 DNMLEELPYLPGRPDLLIYLDASLETLLR 142
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 30.8 bits (69), Expect = 1.1
Identities = 37/190 (19%), Positives = 58/190 (30%), Gaps = 36/190 (18%)
Query: 13 VETPSLPNPPDRSTAETPSVASPTDWSTAE-TPSLPSPT-DWSTAETPSLPNPPDWSTA- 69
++ S N + S++S E +P +P D S ++ + P P +A
Sbjct: 200 IQPSSSNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESAS 259
Query: 70 ---ETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPL-------------------- 106
+ P TD D ST+ TP+ +
Sbjct: 260 QSISSTPTPVSTDTPLHTVKDDSIKFDNSTLGTPTTHVSMKKKESENDSEQQLNFPKDST 319
Query: 107 ---------DRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPP 157
D T P D + + QP Q SP+ +ST SL N P
Sbjct: 320 DEIRKTIQHDVETNAAFQNPLFNDELKWWLASKRYLTQPLQEMSPSMVST-LENSLLNCP 378
Query: 158 DRSTAETPSP 167
D ++P
Sbjct: 379 DSLDVDSPIC 388
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 30.4 bits (68), Expect = 1.2
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 154 PNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRS 213
P PD + P D + P P+ TD N P PD P P TD +
Sbjct: 253 PQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNG------PQDPDNTADNGPQDPDNTDDN 306
Query: 214 TAETPSLHSPTD 225
P H+P+D
Sbjct: 307 GPHDPLPHNPSD 318
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 30.4 bits (68), Expect = 1.6
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 17 SLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPN 76
++P P + T A T ++ P+ P+P+ + P PP + P P
Sbjct: 396 TIPTPGTQGPQGTAPAAGMT--PSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPA 453
Query: 77 PTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGD 133
P P P+ ++ P+L +P TPS P D E +G
Sbjct: 454 PRMPEASPVPGAPDSVASASDAPPTLGDP-SDTAEHTPSGPRTWDGFLEFCQGRNGQ 509
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 30.4 bits (68), Expect = 1.7
Identities = 31/151 (20%), Positives = 45/151 (29%), Gaps = 8/151 (5%)
Query: 110 TTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTD 169
TT T S +P + +T+ S D PAQP TV +P P P+P
Sbjct: 327 TTATQSWAAPVEPVTQTPPVASVDVPPAQP-------TVAWQPVPGPQTGEPVIAPAPEG 379
Query: 170 RSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTV 229
+ P ++ P P P A P E P+ P
Sbjct: 380 YPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQ-PYYAPAP 438
Query: 230 ETPSLPNPPDQSTAETPSLHSPTDRSTAETP 260
E P N ++ T ++
Sbjct: 439 EQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQ 469
Score = 27.7 bits (61), Expect = 10.0
Identities = 34/170 (20%), Positives = 48/170 (28%), Gaps = 4/170 (2%)
Query: 86 PSLPNPTDLSTVETPSLPNPLDRNTTETPSLPS--PTDRITEKTSEHSGDAQPAQPASPT 143
P+ NP L E + LD E P P + + + QP QP +P
Sbjct: 716 PAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQ 775
Query: 144 DLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAET 203
+ P P P + P + P P P +
Sbjct: 776 --PQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 833
Query: 204 PSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTD 253
+P + T P L D + P+ P P PS P D
Sbjct: 834 QQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVD 883
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.2 bits (68), Expect = 1.7
Identities = 21/161 (13%), Positives = 37/161 (22%), Gaps = 7/161 (4%)
Query: 67 STAETPSLPNPTDLSTVGTPSLPNPTDLSTVETP---SLPNPLDRNTTETPSLPSPTDRI 123
++A P + E P P + +P
Sbjct: 393 ASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452
Query: 124 TEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTD 183
+ P D + P+ PPD + P S ++P+
Sbjct: 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512
Query: 184 LNTVETPSLPDPPD----RITAETPSVPSPTDRSTAETPSL 220
P TP+ +P R+ +L
Sbjct: 513 PAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAL 553
Score = 28.7 bits (64), Expect = 5.7
Identities = 17/164 (10%), Positives = 37/164 (22%), Gaps = 7/164 (4%)
Query: 115 SLPSPTDRITEKTSEHSGDAQPAQPASPTDLST--VETPSLPNPPDRSTAETPSPTDRST 172
++P+P R + A A + + + A P
Sbjct: 379 AVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
Query: 173 VETPSLPNPTDLNTVETPSLPDP-PDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVET 231
+ + + + D D A+ P+ ++ P P
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP----PDAAFEPAP 494
Query: 232 PSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPS 275
+ A + + P + TP+
Sbjct: 495 RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.8 bits (67), Expect = 2.0
Identities = 38/228 (16%), Positives = 58/228 (25%), Gaps = 27/228 (11%)
Query: 21 PPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTDL 80
P + A A A P+ +P A + + A P P L
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433
Query: 81 STVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPA 140
+ S P P + A PA
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPAR----AAPAAAP 489
Query: 141 SPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPD-RI 199
+P P P + E SP + + + P ++ P+ DP D
Sbjct: 490 AP-------ADDDPPPWEELPPEFASP---APAQPDAAPAGWVAESIPDPATADPDDAFE 539
Query: 200 TAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPS 247
T +P R+ A T + +P PP S + P
Sbjct: 540 TLAPAPAAAPAPRAAAATEPVVAPR------------PPRASASGLPD 575
Score = 27.9 bits (62), Expect = 9.5
Identities = 29/221 (13%), Positives = 45/221 (20%), Gaps = 18/221 (8%)
Query: 63 PPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDR 122
P + A P + R P+ SP
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAP--APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 123 ITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNP---PDRSTAETPSPTDRSTVETPSLP 179
+ S PA + + P A + R+ P
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
Query: 180 NPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNP-- 237
D PP + P+P A + P
Sbjct: 492 ADDDP----------PPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541
Query: 238 -PDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLP 277
P + A P + T+ A P S + + P
Sbjct: 542 APAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 29.9 bits (67), Expect = 2.0
Identities = 39/220 (17%), Positives = 66/220 (30%), Gaps = 5/220 (2%)
Query: 4 PSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNP 63
P+ P+ P PP ++ T + + P+ P PT + +P+
Sbjct: 343 PTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPT--PPSSSPASSKS 400
Query: 64 PDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRI 123
D P+ S P + + P P + + P+ PSPT
Sbjct: 401 VDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDL-KPPTSPSPTAPT 459
Query: 124 TEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTD 183
S S + PA P + + + + P R + D +PS P
Sbjct: 460 GVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVG 519
Query: 184 LNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSP 223
V S + + P+ + P SP
Sbjct: 520 K--VAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 29.5 bits (66), Expect = 2.3
Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 2/148 (1%)
Query: 61 PNPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSL-PSP 119
+ P + + T L + + LP L P +
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPE 325
Query: 120 TDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLP 179
+ + ++ +PAQPA+ T + + + + +
Sbjct: 326 AGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGS 385
Query: 180 NPTDLNTVETPSLPDPPDRITAETPSVP 207
P DL T +P P E PS+P
Sbjct: 386 PPLDL-TTSLRHMPSPSVTSAPEPPSIP 412
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.5 bits (67), Expect = 2.3
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 173 VETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETP 232
++ S N S P P P+ +P P+ + + P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571
Query: 233 SLPNPPDQSTAETPSLHSPTDRSTAET 259
+ +PP E P+ SPT S+ E
Sbjct: 572 ADSSPP-PPIPEEPT-PSPTKDSSPEE 596
>gnl|CDD|173135 PRK14672, uvrC, excinuclease ABC subunit C; Provisional.
Length = 691
Score = 29.7 bits (66), Expect = 2.5
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 200 TAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAE- 258
T TP PS T T P+L + + N V+ L + + ST T L D TA
Sbjct: 342 TFPTPQTPSST--VTTNAPTLAASQNSNAVQDSGLRSCSETSTMHT--LQKAHDACTASE 397
Query: 259 -----TP--SLHSPTDRSTVETPSLPNHPDLNIYL 286
TP S H+P R+ + L H D+ YL
Sbjct: 398 GTRENTPHESAHTPHHRAILAMAQLNAHEDITRYL 432
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.5 bits (66), Expect = 2.7
Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 10/193 (5%)
Query: 25 STAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPN-----PPDWSTAETPSLPNPTD 79
S + P +S S E P P D + S P S E + P +
Sbjct: 517 SEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEESPLSSHTELEGVATPVE 576
Query: 80 LSTVGTPSLPNPTDLSTVETPS-LPNPLDRNTTETPSLPSPTDRITEKT--SEHSGDAQP 136
+ LP P +++E S RN +P P + + + +++P
Sbjct: 577 TKISSSRKLPPPPVSTSLENDSATVTSTTRNGNVSPHTPQDEQPPSGRKRKRKEEVESEP 636
Query: 137 AQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPP 196
+ E LP P D T+ +P + V+TPS T +TP P
Sbjct: 637 LGNQYLRHHNGSEKDGLPAPMDPVTSCSPVADSSTRVDTPSHELVTSSP--QTPGDPPKK 694
Query: 197 DRITAETPSVPSP 209
+++ T P
Sbjct: 695 NKVNVATQCDPEE 707
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 28.9 bits (65), Expect = 3.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 281 DLNIYLSIALSKFRRSTRDDRQEFGAVLQNFG-----AVLQNILK 320
D+ I + +LS+ + R RQ G V QNF VL+NI++
Sbjct: 64 DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIE 108
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 29.4 bits (66), Expect = 3.2
Identities = 24/176 (13%), Positives = 42/176 (23%), Gaps = 17/176 (9%)
Query: 17 SLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPN 76
+P +S+A A+P + S + E +LP + A S
Sbjct: 53 KMPKVFQKSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSA 112
Query: 77 PTDLSTVGTP-----SLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSE-- 129
+ G L + L + ++ + P + T
Sbjct: 113 RRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPAT 172
Query: 130 ------HSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLP 179
D + Q L RS P+ + P L
Sbjct: 173 ALASAALFKDDEIRQEVDAARSDQASQSRLS----RSRGNPPAIPPDAAPRQPMLT 224
>gnl|CDD|226455 COG3946, VirJ, Type IV secretory pathway, VirJ component
[Intracellular trafficking and secretion].
Length = 456
Score = 29.0 bits (65), Expect = 3.8
Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 80 LSTVGTPSLPNPTDLSTVETPS------LPNPLDRNTTETPSLPSPTDRITEKTSEHSGD 133
L+ +LP P + TP L DRN P + K +
Sbjct: 179 LTPSADAALPAP--APLISTPGSPQNVALEAR-DRNAAVAALAPDLSATEIAKLAVQRAV 235
Query: 134 AQPAQPASPTDLSTVETPSLPNPPDR 159
P PA L VE P+ P D
Sbjct: 236 PIPPPPAGVEALPVVEVPAKPGNSDT 261
>gnl|CDD|237531 PRK13850, PRK13850, type IV secretion system protein VirD4;
Provisional.
Length = 670
Score = 29.1 bits (65), Expect = 3.9
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 112 ETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRS 171
+T SLP P + + P AS TD + + +P+P E SP +R+
Sbjct: 543 QTGSLPEPASLMLPDDTNARRKHLPQPAASSTDQAPAKIALIPDPD-----EPASPQNRT 597
Query: 172 TVETP-----SLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSL 220
+ P + P V+ D D +T E VP TA+ L
Sbjct: 598 VADVPKPLSKGMDAPARAKEVDDAREYDGADDVTPEALVVPELAPALTAQRQLL 651
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 28.7 bits (64), Expect = 4.0
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 128 SEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTV 187
++ + D +P + + + P D+ + P S + + +
Sbjct: 323 ADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPA 382
Query: 188 ETPSLPDPPDRITAETP 204
P A+TP
Sbjct: 383 RARDAAAPD----ADTP 395
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 28.6 bits (64), Expect = 4.4
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 5/115 (4%)
Query: 153 LPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDR 212
LP S S + S+ P TP +P PD + ++
Sbjct: 11 LPIS-SISFLSVVSCSTTSSNSKQPEKKPEIKPNENTPKIPKKPD----NKEPSENNNNK 65
Query: 213 STAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTD 267
S E +P+ N + P ++ P + A+ P+
Sbjct: 66 SNNENKDEENPSSTNPEKKPDPSKNKEEIEKPKDEPKKPDKKPQADQPNNVHADQ 120
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 28.9 bits (65), Expect = 4.5
Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 2/126 (1%)
Query: 132 GDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPS 191
A A + T P P A+ + + + P P+
Sbjct: 367 AAAAEAAAPAEK--KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 192 LPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSP 251
P +P + A P + + + P P S A P+
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484
Query: 252 TDRSTA 257
R T
Sbjct: 485 AARLTP 490
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 28.4 bits (64), Expect = 4.5
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 100 PSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDR 159
P +P P DR+ E +P+ T + + E + +A A A+ L P +
Sbjct: 42 PLVPKPGDRD--EPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP 99
Query: 160 STAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVP 207
A P + P P VE P P P + E + P
Sbjct: 100 EPAPVEPP--KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 28.7 bits (64), Expect = 4.9
Identities = 34/192 (17%), Positives = 51/192 (26%), Gaps = 13/192 (6%)
Query: 44 PSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTD-LSTVGTPSLPNPTDLSTVETPSL 102
P+L S D S+ + S + L +P + LPN
Sbjct: 445 PTLASIPD-EKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFF-------- 495
Query: 103 PNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTA 162
N L + P L IT T + S P P S
Sbjct: 496 -NKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRK 554
Query: 163 ETPSPT-DRSTVETPS-LPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSL 220
+ +RS + +L P+LP + T+ S P+ P
Sbjct: 555 GAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGS 614
Query: 221 HSPTDRNTVETP 232
D + P
Sbjct: 615 VPRFDHENLLPP 626
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 28.4 bits (63), Expect = 5.4
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 141 SPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRIT 200
S T LS++ S T SPT T+ET + + ++T I
Sbjct: 4 SSTTLSSIILSS----------STLSPTTFFTIETSMDESKSIISTFTE--------IIP 45
Query: 201 AETPSVPSPTDRSTAETPSLHSPT 224
E P+ SP+ S + + S S +
Sbjct: 46 TEIPTSESPSPNSNSSSSSSSSSS 69
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 28.4 bits (63), Expect = 5.9
Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 12/92 (13%)
Query: 131 SGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETP 190
G P+ SP P LP P P E PS P
Sbjct: 377 DGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPS------------P 424
Query: 191 SLPDPPDRITAETPSVPSPTDRSTAETPSLHS 222
+ P++ S P P + ++ S
Sbjct: 425 ASAPTPEQQPPVARSAPLPPSPQASAPRNVAS 456
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 28.1 bits (63), Expect = 6.6
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 132 GDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSL-PNPTDLNTVETP 190
AQP QP + V P P + P + E P P + P
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156
Query: 191 SLPDPPDRITAETPSVPSP 209
P A P+ P
Sbjct: 157 VHSAPQPAQQAFQPAEPVA 175
>gnl|CDD|145910 pfam03012, PP_M1, Phosphoprotein. This family includes the M1
phosphoprotein non-structural RNA polymerase alpha
subunit, which is thought to be a component of the
active polymerase, and may be involved in template
binding.
Length = 298
Score = 28.2 bits (63), Expect = 6.7
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 154 PNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRS 213
P PP +ST + + TD + + +++ ++ S P + S
Sbjct: 134 PKPPGKSTEDKSTQTD-----PEKSKPASQSSAPVKKEEQSSSEKVDSQEASGPPALEWS 188
Query: 214 T 214
Sbjct: 189 A 189
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 28.3 bits (63), Expect = 6.8
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 132 GDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNP 181
G+A+ PA P+ + P +T E P P
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKP 61
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 28.3 bits (63), Expect = 6.9
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 162 AETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLH 221
T +P + E + P + + E + P A T + +P+ TAET
Sbjct: 31 IVTTTPATSTEAEQTT---PVESDATEEADNTETP---VAATTAAEAPSSSETAETSDPT 84
Query: 222 SPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHS 264
S T P T P D T LH+
Sbjct: 85 SEATDTTTSEARTVTPAATET-SKPVEGQTVDVRILSTTDLHT 126
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 28.1 bits (62), Expect = 7.2
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 27 AETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPN------PPDWSTAETPS----LPN 76
A++P+ S + + ++ S E P LP P TP L
Sbjct: 328 AQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAI 387
Query: 77 PTDLSTVG--TPSLPNPTDLSTVETP 100
P+ ++ G P+ NP+ L++
Sbjct: 388 PSLVAPPGLVAPTEINPSFLASPRKK 413
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 28.1 bits (62), Expect = 8.0
Identities = 46/242 (19%), Positives = 63/242 (26%), Gaps = 27/242 (11%)
Query: 2 KTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLP 61
+ P P + + P+ P P + S P P S+ E P P
Sbjct: 592 EEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGP 651
Query: 62 NPPDWSTAET-------PSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETP 114
P + + T + V S + L ETP
Sbjct: 652 KIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETP 711
Query: 115 SLPSPTDRITEKTSEHSGDAQPAQPASPTDLS-TVETPSLPNPPDRSTAETPSPTDRSTV 173
P T R P P P D E P+ E +P +
Sbjct: 712 GTPFTTPR-------------PLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERT 758
Query: 174 ETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPS 233
P T L + + I AET R ++PS H PS
Sbjct: 759 FFHETPADTPLPDILAEEFKEED--IHAETGEPDEAMKR--PDSPSEHEDKPPGD--HPS 812
Query: 234 LP 235
LP
Sbjct: 813 LP 814
>gnl|CDD|188424 TIGR03909, pyrrolys_PylC, pyrrolysine biosynthesis protein PylC.
This protein is PylC, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 374
Score = 27.9 bits (62), Expect = 8.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 46 LPSPTDWSTAETPSLPNPPDWSTAE 70
LP+P W P P S +E
Sbjct: 114 LPTPKPWPGCGFPYFVKPSCESGSE 138
>gnl|CDD|165142 PHA02777, PHA02777, major capsid L1 protein; Provisional.
Length = 555
Score = 27.7 bits (61), Expect = 8.9
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 27 AETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTDLSTVGTP 86
AE ++A + P D P P E P++ + T P
Sbjct: 96 AEAGALAEEIE-LLPMAPISGRARDPFGEGFGEEPFDPIGIPPERPNILHEQRFPTDAAP 154
Query: 87 SLPNPTDLSTVETPSLPN--PLDRNTTETPSLPSPTDRITEKT 127
TD++T+E P P D E PS+ P +T +T
Sbjct: 155 FDNGNTDIATIEGPHDPFGAGGDIAIIELPSVNDPGPSVTART 197
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 27.8 bits (62), Expect = 9.0
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 135 QPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPD 194
P P D + ET P S AE T +T E + N P +P
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPK 256
Query: 195 PPDRITAETPSVPSPTDRSTAETPSL 220
P E PS P P + PSL
Sbjct: 257 PYIS-PDEYPSAPLPPELPQLLQPSL 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.302 0.121 0.353
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,061,948
Number of extensions: 1460377
Number of successful extensions: 2682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1762
Number of HSP's successfully gapped: 523
Length of query: 320
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 223
Effective length of database: 6,635,264
Effective search space: 1479663872
Effective search space used: 1479663872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 59 (26.6 bits)