RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6677
(320 letters)
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 55.5 bits (133), Expect = 1e-08
Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 18/268 (6%)
Query: 1 MKTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLP-SPTDWSTAETPS 59
+ + + + +P + + + + A + D+ A +P S S
Sbjct: 1479 LVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVS 1538
Query: 60 LPNPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLP--NPLDRNTTETPSLP 117
P S +P+ P + S +P+ P+ + S +P+ P +P + + T
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598
Query: 118 SPTDRITEKTSEHSGDAQPA-QPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETP 176
SPT TS P+ P SP+ +P+ P+ S + +P+ S
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1653
Query: 177 SLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPN 236
P + P P +P+ PS + S + +P+ SP T + S P
Sbjct: 1654 YSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPT--SPNYSPTSPSYS-PT 1706
Query: 237 PPDQSTAETPSLHSPTDRSTAETPSLHS 264
P S +SP + +S
Sbjct: 1707 SPGYSP--GSPAYSPKQDEQKHNENENS 1732
Score = 51.2 bits (122), Expect = 2e-07
Identities = 57/266 (21%), Positives = 95/266 (35%), Gaps = 20/266 (7%)
Query: 19 PNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPT 78
+ + SP S + T + A+ P + E P+ P
Sbjct: 1478 GLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGAD-YGEATSPFGAYGEAPTSPGFG 1536
Query: 79 DLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLP--SPTDRITEKTSEHSGDAQP 136
S +P+ P + S +P+ P+ + + +P+ P SPT TS P
Sbjct: 1537 VSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1596
Query: 137 A-QPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDP 195
+ P SP+ T + S +P T+ + SPT S +P+ P+ S
Sbjct: 1597 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPS------YSPTSPSYS 1648
Query: 196 PDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRS 255
P T SPT + + T +SPT + T +P S + T +SPT S
Sbjct: 1649 P------TSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT--S 1700
Query: 256 TAETPSLHSPTDRSTVETPSLPNHPD 281
+ +P+ + S +P
Sbjct: 1701 PSYSPTSPGYSPGSPAYSPKQDEQKH 1726
Score = 36.2 bits (83), Expect = 0.014
Identities = 41/188 (21%), Positives = 63/188 (33%), Gaps = 2/188 (1%)
Query: 81 STVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLP--SPTDRITEKTSEHSGDAQPAQ 138
T + V+ + +PL + + + + A
Sbjct: 1470 VTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEA 1529
Query: 139 PASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDR 198
P SP + S +P T+ SPT S T +PT + T P
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589
Query: 199 ITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAE 258
+ T SPT S + T +SPT + T +P S + T +SPT S +
Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649
Query: 259 TPSLHSPT 266
T +SPT
Sbjct: 1650 TSPSYSPT 1657
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 44.3 bits (104), Expect = 5e-05
Identities = 69/283 (24%), Positives = 101/283 (35%), Gaps = 15/283 (5%)
Query: 1 MKTPSVPIDLSTVETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETP-- 58
M T +P T S + + SP +E A +P
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYK 1532
Query: 59 SLPNPPDWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLP--NPLDRNTTETPSL 116
+ +P S + P S +PS P + S PS P +P + + T
Sbjct: 1533 GVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYST-SPAYMPSSPSYSPTSPSYSPTSPS 1591
Query: 117 PSPTDRITEKTSEHSGDAQPAQPA-SPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVET 175
SPT + S S P+ SPT S T +P T+ + SPT S T
Sbjct: 1592 YSPT---SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSP----TSPSYSPTSPSYSPT 1644
Query: 176 PSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLP 235
+PT + T P + T SPT S + T +SPT + T
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704
Query: 236 NPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPN 278
+P S + T +SPT S + T +SPT S +P+ P+
Sbjct: 1705 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPS 1745
Score = 43.5 bits (102), Expect = 7e-05
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 18/262 (6%)
Query: 7 PIDLSTVETPSLPNPPDRSTAETP--SVASPTDWSTAETPSLPSPTDWSTAETPSLPNPP 64
P+ E A +P V SP S + P S + +PS P
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566
Query: 65 DWSTAETPSLPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRIT 124
S A PS P+ + S +P+ P+ + S +P+ P+ + + +P+ PS
Sbjct: 1567 T-SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPS------ 1619
Query: 125 EKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDL 184
+S + P SP+ T + S +P T+ + SPT S T +PT
Sbjct: 1620 -----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Query: 185 NTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAE 244
+ +P+ P + +P+ PS + S + +P+ SP+ T + S +P T+
Sbjct: 1675 SY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSP 1730
Query: 245 TPSLHSPTDRSTAETPSLHSPT 266
+ S SP+ T+ + S SP+
Sbjct: 1731 SYSPTSPSYSPTSPSYSPTSPS 1752
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.024
Identities = 49/260 (18%), Positives = 75/260 (28%), Gaps = 56/260 (21%)
Query: 94 LSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSE--------HSGDAQP--AQPASPT 143
L T + + L TT SL + +T + P +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 144 DLSTVETPSLPNPPDRSTAETPSPTDR--STVETPSLPNPTDLNTVETPSLPD-----PP 196
LS + S+ + D+ + +E+ SL L E + D PP
Sbjct: 329 RLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIES-SL---NVLEPAEYRKMFDRLSVFPP 383
Query: 197 D-RITAETPSV---PSPTDRSTAETPSLH--SPTDRNTVETPSLPNPPDQSTAETPSLHS 250
I S+ LH S ++ P +ST PS++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----------PKESTISIPSIYL 433
Query: 251 PTDRSTAETPSLHSPTDRSTVE---TPS-------LPNHPDLNIYLSIA--LSKFRRSTR 298
+LH RS V+ P +P + D Y I L R
Sbjct: 434 ELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 299 DDRQEFGAVLQNFGAVLQNI 318
F V +F + Q I
Sbjct: 490 MT--LFRMVFLDFRFLEQKI 507
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 34.5 bits (79), Expect = 0.048
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 138 QPASPTDLSTVETPSL----PNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLP 193
Q AS T++ N D S + PS S S P + T
Sbjct: 746 QAASAAIQFTIDQKIADQATENVADISNLKRPSYMPSSASYAASDFVPAAVTANATIPSL 805
Query: 194 DPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAET 245
D + E P+ + T L+ + V P ++ A
Sbjct: 806 DSSSEASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPI 857
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 33.4 bits (76), Expect = 0.11
Identities = 11/91 (12%), Positives = 16/91 (17%), Gaps = 10/91 (10%)
Query: 14 ETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPS 73
+P P + A A+P P + P P
Sbjct: 6 TSPGTPGVAAATQAANGGPATPA----------PPALGAAPTGDPKPKKNKKPKNPTPPR 55
Query: 74 LPNPTDLSTVGTPSLPNPTDLSTVETPSLPN 104
G +L E
Sbjct: 56 PAGDNATVAAGHATLREHLRDIKAENTDANF 86
Score = 32.6 bits (74), Expect = 0.20
Identities = 11/84 (13%), Positives = 16/84 (19%), Gaps = 2/84 (2%)
Query: 135 QPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPD 194
PA P SP + P + P P
Sbjct: 1 DPAAPTSPGTPGVA--AATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Query: 195 PPDRITAETPSVPSPTDRSTAETP 218
+ A ++ AE
Sbjct: 59 DNATVAAGHATLREHLRDIKAENT 82
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 3/95 (3%)
Query: 188 ETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPS 247
+P P A +P + P+ + P P PP + + +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPT--GDPKPKKNKKPKNPTPP-RPAGDNAT 62
Query: 248 LHSPTDRSTAETPSLHSPTDRSTVETPSLPNHPDL 282
+ + + + + P +
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPPTGATV 97
Score = 28.0 bits (62), Expect = 4.5
Identities = 12/88 (13%), Positives = 18/88 (20%), Gaps = 5/88 (5%)
Query: 112 ETPSLPSPTDRITEKTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRS 171
+P P + A PA A+PT P P P +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPT-----GDPKPKKNKKPKNPTPPRPAGDN 60
Query: 172 TVETPSLPNPTDLNTVETPSLPDPPDRI 199
+ D +
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYV 88
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 32.0 bits (72), Expect = 0.24
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 2/137 (1%)
Query: 24 RSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPTDLSTV 83
+ST SL SPT + PS +P +P + +ST+
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPS-LHPSLGPGIGSPGQLHSP-ISTL 59
Query: 84 GTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQPASPT 143
+P S + +P P+ + TT T + + +++ + S P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 144 DLSTVETPSLPNPPDRS 160
+ V N +
Sbjct: 120 GVLKVPAHPSGNMASFT 136
Score = 31.6 bits (71), Expect = 0.32
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 1/116 (0%)
Query: 165 PSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPT 224
SPT R ++ PS +P+ + +P P + + P + HS +
Sbjct: 25 TSPTGRGSMAAPS-LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMS 83
Query: 225 DRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSPTDRSTVETPSLPNHP 280
T P S+ P S + + + S H
Sbjct: 84 VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139
Score = 30.1 bits (67), Expect = 1.1
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 206 VPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRSTAETPSLHSP 265
ST SL SPT R ++ PSL LHSP ++ + P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 266 TDRSTVETPSLPNHPDLNIYLSIALS 291
S + +P P+ + ++ S
Sbjct: 70 F--SVISSPMGPHSMSVPTTPTLGFS 93
Score = 29.7 bits (66), Expect = 1.4
Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 7/136 (5%)
Query: 19 PNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPSLPNPT 78
+ ST S+ SPT + PS P+ +P + P +L +P
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSMAAPS-LHPSLGPGIGSPGQLHSP------ISTLSSPI 63
Query: 79 DLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQ 138
+ + +P ++ P+ P + S P +E G +
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 139 PASPTDLSTVETPSLP 154
+ +
Sbjct: 124 VPAHPSGNMASFTKHI 139
Score = 29.3 bits (65), Expect = 2.0
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 20/143 (13%)
Query: 135 QPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPD 194
ST SL +P R + PS +P+ + +P
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL------------HPSLGPGIGSPGQLH 53
Query: 195 PPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDR 254
P ++ SP + + SP +++ P+ P + +P L SP +
Sbjct: 54 SP------ISTLSSPINGMGPPFSVISSPMGPHSMSVPT--TPTLGFSTGSPQLSSPMNP 105
Query: 255 STAETPSLHSPTDRSTVETPSLP 277
++ ++ P+ P
Sbjct: 106 VSSSEDIKPPLGLNGVLKVPAHP 128
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 29.2 bits (65), Expect = 1.7
Identities = 19/158 (12%), Positives = 33/158 (20%), Gaps = 5/158 (3%)
Query: 80 LSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITEKTSEHSGDAQPAQP 139
L + P+DL+ + + + PTD + +
Sbjct: 4 LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDR----SPFVTSPISMT 59
Query: 140 ASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRI 199
P P +E P P S T S+P +
Sbjct: 60 MPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILEL 119
Query: 200 -TAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPN 236
E + + + T L
Sbjct: 120 LKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 157
Score = 28.8 bits (64), Expect = 2.7
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 4/146 (2%)
Query: 126 KTSEHSGDAQPAQPASPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLN 185
+ A P+ + + + + S P A P+ DRS T + +
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPL-NHAALPPTDYDRSPFVTSPISMTMPPH 63
Query: 186 TV---ETPSLPDPPDRITAETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQST 242
P I +E P + + S + S + P L +
Sbjct: 64 GSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCE 123
Query: 243 AETPSLHSPTDRSTAETPSLHSPTDR 268
+ P + + + + S ++
Sbjct: 124 PDEPQVQAKIMAYLQQEQANRSKHEK 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.9
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 18/63 (28%)
Query: 91 PTDLS--TVETP-SLPNPLDRNTTE-----TPSLPSPTDRITEKTSEHSGDAQPAQPASP 142
P LS ++E +P ++ LP PT+ A +P +P
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF----------AADDEPTTP 57
Query: 143 TDL 145
+L
Sbjct: 58 AEL 60
Score = 27.7 bits (61), Expect = 6.2
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 7 PIDLS--TVETPSLPNPPDRSTAETPSVASPTDWSTAE------TPSLPSPTDWSTA-ET 57
P+ LS ++E L P + A LP PT+ A +
Sbjct: 8 PLTLSHGSLEH-VLLVPTA-------------SFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 58 PSLPNPPDWSTAE 70
P+ + AE
Sbjct: 54 PT-------TPAE 59
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4;
2.45A {Synechocystis SP} SCOP: a.280.1.1
Length = 147
Score = 27.0 bits (59), Expect = 5.3
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 211 DRSTAETP-SLHSPTDRNTVETPSLPNPPDQSTAE 244
+R T + P++ + E+ + +PP + E
Sbjct: 107 ERLTRTVAEVDNFPSETSNGESNNNDSPPSAAALE 141
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 27.9 bits (61), Expect = 5.8
Identities = 14/116 (12%), Positives = 23/116 (19%), Gaps = 9/116 (7%)
Query: 141 SPTDLSTVETPSLPNPPDRSTAETPSPTDRSTVETPSLPNPTDLNTVETPSLPDPPDRIT 200
S ++ R P P+ S TP +
Sbjct: 10 SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASA---------ERASTAAP 60
Query: 201 AETPSVPSPTDRSTAETPSLHSPTDRNTVETPSLPNPPDQSTAETPSLHSPTDRST 256
+P+ PSP S S + T + +
Sbjct: 61 VASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.4 bits (60), Expect = 6.7
Identities = 14/107 (13%), Positives = 20/107 (18%), Gaps = 3/107 (2%)
Query: 14 ETPSLPNPPDRSTAETPSVASPTDWSTAETPSLPSPTDWSTAETPSLPNPPDWSTAETPS 73
S P S PS + + S P T A P +
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAA---GNPPDT 64
Query: 74 LPNPTDLSTVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPT 120
+ + L + T P P
Sbjct: 65 VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.302 0.121 0.353
Gapped
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,499,143
Number of extensions: 245596
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 99
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 57 (26.6 bits)