RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6677
         (320 letters)



>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
           dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
           5724]}
          Length = 362

 Score = 29.8 bits (66), Expect = 0.41
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 170 RSTVETPSLPNPTDLNTVETPSLPDPPDRITAETPSVPSPTD 211
            STV+   +P+  +L+T            I  + P V +   
Sbjct: 20  LSTVD--CIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQ 59



 Score = 29.0 bits (64), Expect = 0.81
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 81  STVGTPSLPNPTDLSTVETPSLPNPLDRNTTETPSLPSPTDRITE 125
           STV    +P+  +LST               + P + +    ++ 
Sbjct: 21  STVD--CIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSG 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.121    0.353 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,098,068
Number of extensions: 49110
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 12
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (24.4 bits)