BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6681
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 17 KIDVP-RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVL 75
K+ P +++ NLA AD FM ++ G + S G F GC + GF + L
Sbjct: 68 KLRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLEGFFATL 120
Query: 76 SAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY 135
E+++++L V+ +ER + M N R HA + W A+ A PL G S Y
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY 179
Query: 136 ----------RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ 185
Y T P E T + Y+ + FI + +++ CY ++ ++ +
Sbjct: 180 IPEGMQCSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAA 235
Query: 186 AWNSN-------DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV-- 236
A + + + + ++V L+CW P A VA H S T+
Sbjct: 236 AQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSCFGPIFMTIPA 293
Query: 237 FVLPLNSCCNPFLYAILTKQFKK 259
F ++ NP +Y ++ KQF+
Sbjct: 294 FFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 17 KIDVP-RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVL 75
K+ P +++ NLA AD FM ++ G + S G F GC + GF + L
Sbjct: 67 KLRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLEGFFATL 119
Query: 76 SAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY 135
E+++++L V+ +ER + M N R HA + W A+ A PL G S Y
Sbjct: 120 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY 178
Query: 136 ----------RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ 185
Y T P E T + Y+ + FI + +++ CY ++ ++ +
Sbjct: 179 IPEGMQCSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAA 234
Query: 186 AWNSN-------DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV-- 236
A + + + + ++V L+CW P A VA H S T+
Sbjct: 235 AQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSCFGPIFMTIPA 292
Query: 237 FVLPLNSCCNPFLYAILTKQFKK 259
F ++ NP +Y ++ KQF+
Sbjct: 293 FFAKTSAVYNPVIYIMMNKQFRN 315
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 17 KIDVP-RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVL 75
K+ P +++ NLA AD FM ++ G + S G F GC + GF + L
Sbjct: 68 KLRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLQGFFATL 120
Query: 76 SAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY 135
E+++++L V+ +ER + M N R HA + W A+ A PL G S Y
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY 179
Query: 136 ----------RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ 185
Y T P E T + Y+ + FI + +++ CY ++ ++ +
Sbjct: 180 IPEGMQCSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAA 235
Query: 186 AWNSN-------DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV-- 236
A + + + + ++V L+CW P A VA H S T+
Sbjct: 236 AQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSCFGPIFMTIPA 293
Query: 237 FVLPLNSCCNPFLYAILTKQFKK 259
F ++ NP +Y ++ KQF+
Sbjct: 294 FFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 33/257 (12%)
Query: 22 RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSV 81
+++ NLA AD FM ++ G + S G F GC + GF + L E+++
Sbjct: 74 NYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLEGFFATLGGEIAL 126
Query: 82 FTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY------ 135
++L V+ +ER + M N R HA + W A+ A PL G S Y
Sbjct: 127 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 185
Query: 136 ----RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSN- 190
Y T P E T + Y+ + FI + +++ CY ++ ++ + A
Sbjct: 186 CSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAAAQQQES 241
Query: 191 ------DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV--FVLPLN 242
+ + + + ++V L+CW P A VA H S T+ F +
Sbjct: 242 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSDFGPIFMTIPAFFAKTS 299
Query: 243 SCCNPFLYAILTKQFKK 259
+ NP +Y ++ KQF+
Sbjct: 300 AVYNPVIYIMMNKQFRN 316
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 33/257 (12%)
Query: 22 RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSV 81
+++ NLA AD FM ++ G + S G F GC + GF + L E+++
Sbjct: 73 NYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLEGFFATLGGEIAL 125
Query: 82 FTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY------ 135
++L V+ +ER + M N R HA + W A+ A PL G S Y
Sbjct: 126 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 184
Query: 136 ----RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSN- 190
Y T P E T + Y+ + FI + +++ CY ++ ++ + A
Sbjct: 185 CSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAAAQQQES 240
Query: 191 ------DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV--FVLPLN 242
+ + + + ++V L+CW P A VA H S T+ F +
Sbjct: 241 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSDFGPIFMTIPAFFAKTS 298
Query: 243 SCCNPFLYAILTKQFKK 259
+ NP +Y ++ KQF+
Sbjct: 299 AVYNPVIYIMMNKQFRN 315
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 17 KIDVP-RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVL 75
K+ P +++ NLA AD FM ++ G + S G F GC + GF + L
Sbjct: 68 KLRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLEGFFATL 120
Query: 76 SAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY 135
E+++++L V+ +ER + M N R HA + W A+ A PL G S Y
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY 179
Query: 136 ----------RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ 185
Y T P E T + Y+ + FI + +++ CY ++ ++ +
Sbjct: 180 IPEGMQCSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAA 235
Query: 186 AWNSNDSRIAK------RMALL-VFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV-- 236
A + K RM ++ V L+CW P A VA H S T+
Sbjct: 236 AQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIF--THQGSCFGPIFMTIPA 293
Query: 237 FVLPLNSCCNPFLYAILTKQFKK 259
F ++ NP +Y ++ KQF+
Sbjct: 294 FFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 53/271 (19%)
Query: 24 LVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAELSVF 82
+ NLA +DF ++V+ L + W A C++ GF+ + +S+
Sbjct: 71 FIINLAFSDF-------TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 123
Query: 83 TLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCL 142
T+A+I+++R I M +K++S + A +++ W +++L A+ P+FG Y
Sbjct: 124 TMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAY------- 176
Query: 143 PFETTTGVW---SLTYI---------VFLMFINGV--AFLILMGCYLKMYCAI------- 181
T GV S YI + MFI G LI+ CY + ++
Sbjct: 177 ---TLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEM 233
Query: 182 ------------RGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICG-VHLVSL 228
R +QA + + R+AK ++V LL W P A+VAL A G + V+
Sbjct: 234 AAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP 293
Query: 229 EQAKIFTVFVLPLNSCCNPFLYAILTKQFKK 259
A++ +F ++ NP +Y++ +F++
Sbjct: 294 YAAQLPVMFA-KASAIHNPMIYSVSHPKFRE 323
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 53/271 (19%)
Query: 24 LVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAELSVF 82
+ NLA +DF ++V+ L + W A C++ GF+ + +S+
Sbjct: 72 FIINLAFSDF-------TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124
Query: 83 TLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCL 142
T+A+I+++R I M +K++S + A +++ W +++L A+ P+FG Y
Sbjct: 125 TMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAY------- 177
Query: 143 PFETTTGVW---SLTYI---------VFLMFINGV--AFLILMGCYLKMYCAI------- 181
T GV S YI + MFI G LI+ CY + ++
Sbjct: 178 ---TLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEM 234
Query: 182 ------------RGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICG-VHLVSL 228
R +QA + + R+AK ++V LL W P A+VAL A G + V+
Sbjct: 235 AAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP 294
Query: 229 EQAKIFTVFVLPLNSCCNPFLYAILTKQFKK 259
A++ +F ++ NP +Y++ +F++
Sbjct: 295 YAAQLPVMFA-KASAIHNPMIYSVSHPKFRE 324
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 54/295 (18%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V + + + +V + V +LAAAD + +G+LA+ A T+ A
Sbjct: 21 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD----ILVGVLAIPFAITISTGFCAA--- 73
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLS-LKHAGYIMVCGWS 119
GC ++ A+ S+F+L I ++R AI + N ++ + AG I +C W
Sbjct: 74 --CHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAIC-WV 130
Query: 120 FAILMAVLPLFGISDYRK--------------YATCLPFETTTGVWSLTYIVFLMFING- 164
+ + + P+ G ++ + CL FE + Y+V+ F
Sbjct: 131 LSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACL-FEDVV---PMNYMVYFNFFACV 186
Query: 165 -VAFLILMGCYLKMYCAIR------------GSQAWNSNDSRI--AKRMALLVFTDLLCW 209
V L+++G YL+++ A R G +A ++ + AK A++ LCW
Sbjct: 187 LVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCW 246
Query: 210 FPIALV-ALTAICGVHLVSLEQAKIFTVFVLPL----NSCCNPFLYAILTKQFKK 259
P+ ++ T C A ++ +++ + NS NPF+YA ++F++
Sbjct: 247 LPLHIINCFTFFCP----DCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQ 297
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 127/294 (43%), Gaps = 52/294 (17%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V + + + +V + V +LAAAD + +G+LA+ A T+ A
Sbjct: 21 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD----IAVGVLAIPFAITISTGFCAA--- 73
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
GC ++ + S+F+L I ++R AI + N ++ A I+ W
Sbjct: 74 --CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVL 131
Query: 121 AILMAVLPLFGISDYRK--------------YATCLPFETTTGVWSLTYIVFLMFING-- 164
+ + + P+ G ++ + CL FE + Y+V+ F
Sbjct: 132 SFAIGLTPMLGWNNCGQPKEGKQHSQGCGEGQVACL-FEDVV---PMNYMVYFNFFACVL 187
Query: 165 VAFLILMGCYLKMYCAIR------------GSQAWNSNDSRI--AKRMALLVFTDLLCWF 210
V L+++G YL+++ A R G +A ++ + AK +A++V LCW
Sbjct: 188 VPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWL 247
Query: 211 PIALV-ALTAICGVHLVSLEQAKIFTVFVLPL----NSCCNPFLYAILTKQFKK 259
P+ ++ T C A ++ +++ + NS NPF+YA ++F++
Sbjct: 248 PLHIINCFTFFCP----DCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ 297
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 115/271 (42%), Gaps = 22/271 (8%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V++V++ + NLA AD L L L L F +
Sbjct: 140 LLGNCLVMYVILRHTKMKTATNIYIFNLALAD---TLVLLTLPFQGTDILLGFWPFG--- 193
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMH-LNKRLSLKHAGYIMVCGWS 119
+A C+ + + S FTL ++++R AI H + L+ R S K A + V W+
Sbjct: 194 --NALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSK-AQAVNVAIWA 250
Query: 120 FAILMAV-LPLFGISDYR-KYATCL-PFETTTGVWSLTY-IVFLMFINGVAFLILMGCYL 175
A ++ V + + G + + CL T W + I +F V L++ CY
Sbjct: 251 LASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYS 310
Query: 176 KMYCAIRG------SQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLE 229
M +RG S+ + N RI + + ++V + CW P+ + L GV S
Sbjct: 311 LMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSET 370
Query: 230 QAKI--FTVFVLPLNSCCNPFLYAILTKQFK 258
I F + +NSC NP LYA L + FK
Sbjct: 371 AVAILRFCTALGYVNSCLNPILYAFLDENFK 401
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 130/298 (43%), Gaps = 60/298 (20%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V + + + +V + V + AAAD + +G+LA+ A AI
Sbjct: 21 ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAAD----ILVGVLAIPFA--------IAIST 68
Query: 61 QMSAGCQ----MAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVC 116
A C +A F+ VL+A S+F+L I ++R AI + N ++ A I+
Sbjct: 69 GFCAACHGCLFIACFVLVLTAS-SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 127
Query: 117 GWSFAILMAVLPLFGISDYRK--------------YATCLPFETTTGVWSLTYIVFLMFI 162
W + + + P+ G ++ + CL FE + Y+V+ F
Sbjct: 128 CWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACL-FEDVV---PMNYMVYFNFF 183
Query: 163 NG--VAFLILMGCYLKMYCAIR------------GSQAWNSNDSRI--AKRMALLVFTDL 206
V L+++G YL+++ A R G +A ++ + AK +A++V
Sbjct: 184 ACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFA 243
Query: 207 LCWFPIALV-ALTAICGVHLVSLEQAKIFTVFVLPL----NSCCNPFLYAILTKQFKK 259
LCW P+ ++ T C A ++ +++ + NS NPF+YA ++F++
Sbjct: 244 LCWLPLHIINCFTFFCP----DCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ 297
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 29/246 (11%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQM-SAGCQMAGFMSVLSAE 78
V + + +LA AD MGL AVV G + W + C+ + VL
Sbjct: 39 VTNYFITSLACADLVMGL-----AVVP---FGAAHILTKTWTFGNFWCEFWTSIDVLCVT 90
Query: 79 LSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRK- 137
S+ TL VI ++R +AIT L+ A I++ W + L + LP+ + YR
Sbjct: 91 ASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI-QMHWYRAT 149
Query: 138 -------YA--TCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYC-AIRGSQAW 187
YA TC F T + IV V +I++ Y +++ A R Q
Sbjct: 150 HQEAINCYAEETCCDFFTNQAYAIASSIVSFY----VPLVIMVFVYSRVFQEAKRQLQKI 205
Query: 188 NS---NDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSC 244
+ + + K + +++ T LCW P +V + + +L+ ++ I ++ +NS
Sbjct: 206 DKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-KEVYILLNWIGYVNSG 264
Query: 245 CNPFLY 250
NP +Y
Sbjct: 265 FNPLIY 270
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 38/234 (16%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V + + + +V + V +LAAAD + +G+LA+ A T+
Sbjct: 36 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD----IAVGVLAIPFAITIST-------- 83
Query: 61 QMSAGCQ----MAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVC 116
A C +A F+ VL+ + S+F+L I ++R AI + N ++ A I+
Sbjct: 84 GFCAACHGCLFIACFVLVLT-QSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 142
Query: 117 GWSFAILMAVLPLFGISD--------------YRKYATCLPFETTTGVWSLTYIVFLMFI 162
W + + + P+ G ++ CL FE V + Y+V+ F
Sbjct: 143 CWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACL-FED---VVPMNYMVYFNFF 198
Query: 163 NG--VAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIAL 214
V L+++G YL+++ A R Q RI + + L ++ D ++ I +
Sbjct: 199 ACVLVPLLLMLGVYLRIFLAAR-RQLNIFEMLRIDEGLRLKIYKDTEGYYTIGI 251
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 195 AKRMALLVFTDLLCWFPIALV-ALTAICGVHLVSLEQAKIFTVFVLPL----NSCCNPFL 249
AK +A++V LCW P+ ++ T C A ++ +++ + NS NPF+
Sbjct: 394 AKSLAIIVGLFALCWLPLHIINCFTFFCP----DCSHAPLWLMYLAIVLSHTNSVVNPFI 449
Query: 250 YAILTKQFKK 259
YA ++F++
Sbjct: 450 YAYRIREFRQ 459
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V + + + +V + V +LAAAD + +G+LA+ A T+ A
Sbjct: 46 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD----IAVGVLAIPFAITISTGFCAA--- 98
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
GC ++ + S+F+L I ++R AI + N ++ A I+ W
Sbjct: 99 --CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVL 156
Query: 121 AILMAVLPLFGISDYRK--------------YATCLPFETTTGVWSLTYIVFLMFING-- 164
+ + + P+ G ++ + CL FE V + Y+V+ F
Sbjct: 157 SFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACL-FED---VVPMNYMVYFNFFACVL 212
Query: 165 VAFLILMGCYLKMYCAIR 182
V L+++G YL+++ A R
Sbjct: 213 VPLLLMLGVYLRIFLAAR 230
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 195 AKRMALLVFTDLLCWFPIALV-ALTAICGVHLVSLEQAKIFTVFVLPL----NSCCNPFL 249
AK +A++V LCW P+ ++ T C A ++ +++ + NS NPF+
Sbjct: 353 AKSLAIIVGLFALCWLPLHIINCFTFFCP----DCSHAPLWLMYLAIVLSHTNSVVNPFI 408
Query: 250 YAILTKQFKK 259
YA ++F++
Sbjct: 409 YAYRIREFRQ 418
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 75 VTNYFITSLACADLVMGL--AVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTA 127
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S++TL VI ++R +AIT L+ A I++ W + L + LP+
Sbjct: 128 SIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 177
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 104/274 (37%), Gaps = 57/274 (20%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSA-GCQMAGFMSVLSAE 78
V + + +LA AD MGL AVV G + W C+ + VL
Sbjct: 216 VTNYFITSLACADLVMGL-----AVV---PFGAAHILTKTWTFGNFWCEFWTSIDVLCVT 267
Query: 79 LSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRK- 137
S+ TL VI ++R +AIT L+ A I++ W + L + LP+ + YR
Sbjct: 268 ASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI-QMHWYRAT 326
Query: 138 -------YA--TCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYC--------- 179
YA TC F T + IV V +I++ Y +++
Sbjct: 327 HQEAINCYAEETCCDFFTNQAYAIASSIVSFY----VPLVIMVFVYSRVFQEAKRQLQKI 382
Query: 180 -----------------------AIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVA 216
+R S + + + K + +++ T LCW P +V
Sbjct: 383 DKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVN 442
Query: 217 LTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLY 250
+ + +L+ ++ I ++ +NS NP +Y
Sbjct: 443 IVHVIQDNLIR-KEVYILLNWIGYVNSGFNPLIY 475
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 55/273 (20%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 68 VTNYFITSLACADLVMGL--AVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTA 120
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRK-- 137
S+ TL VI ++R +AIT L+ A I++ W + L + LP+ + YR
Sbjct: 121 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI-QMHWYRATH 179
Query: 138 ------YA--TCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYC---------- 179
YA TC F T + IV V +I++ Y +++
Sbjct: 180 QEAINCYAEETCCDFFTNQAYAIASSIVSFY----VPLVIMVFVYSRVFQEAKRQLQKID 235
Query: 180 ----------------------AIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVAL 217
+R S + + + K + +++ T LCW P +V +
Sbjct: 236 KSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNI 295
Query: 218 TAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLY 250
+ +L+ ++ I ++ +NS NP +Y
Sbjct: 296 VHVIQDNLIR-KEVYILLNWIGYVNSGFNPLIY 327
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 55/273 (20%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 67 VTNYFITSLACADLVMGL--AVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTA 119
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRK-- 137
S+ TL VI ++R +AIT L+ A I++ W + L + LP+ + YR
Sbjct: 120 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI-QMHWYRATH 178
Query: 138 ------YA--TCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYC---------- 179
YA TC F T + IV V +I++ Y +++
Sbjct: 179 QEAINCYANETCCDFFTNQAYAIASSIVSFY----VPLVIMVFVYSRVFQEAKRQLQKID 234
Query: 180 ----------------------AIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVAL 217
+R S + + + K + +++ T LCW P +V +
Sbjct: 235 KSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNI 294
Query: 218 TAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLY 250
+ +L+ ++ I ++ +NS NP +Y
Sbjct: 295 VHVIQDNLIR-KEVYILLNWIGYVNSGFNPLIY 326
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 74 VTNYFITSLACADLVMGL--AVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTA 126
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S+ TL VI ++R +AIT L+ A I++ W + L + LP+
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 176
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 75 VTNYFITSLACADLVMGL--AVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTA 127
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S+ TL VI ++R +AIT L+ A I++ W + L + LP+
Sbjct: 128 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 177
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 43 VTNYFITSLACADLVMGL--AVVPFGAACILMKMWTFGNFW-----CEFWTSIDVLCVTA 95
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S+ TL VI ++R +AIT L+ A I++ W + L + LP+
Sbjct: 96 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 145
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 20 VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79
V + + +LA AD MGL ++ A L + + W C+ + VL
Sbjct: 44 VTNYFITSLACADLVMGL--AVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTA 96
Query: 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S+ TL VI ++R +AIT L+ A I++ W + L + LP+
Sbjct: 97 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 146
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 28/179 (15%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+ GNG V ++ R+ +LV +LA AD + + V T G W
Sbjct: 53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG-------VW 105
Query: 61 QMS-AGCQMAGFMSVLSAELSVFTLAVITLERNYAI---THAMHLNKRLSLKHAGYIMVC 116
S C + + V+ S++ L I+++R A+ H H + S + ++
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITA 165
Query: 117 GWSFAILMAVLPLFGIS-------------DYRKYATC----LPFETTTGVWSLTYIVF 158
W A ++ LFG + D+ Y++ LPF T V++ Y+V
Sbjct: 166 VWVLAFAVSCPLLFGFNTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVL 224
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 189 SNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPF 248
+ + + AK++ ++ +LCW P + I E +FT+++ +NS NP
Sbjct: 366 NRERKAAKQLGFIMAAFILCWIPY-FIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPL 424
Query: 249 LYAILTKQFKK 259
+Y + + FKK
Sbjct: 425 IYPLCNENFKK 435
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 23 FLVCNLAAADFFMGLYL---GLLAVVDASTL-GEFRMYAIPWQMSAGCQMAGFMSVLSAE 78
+ +LA AD +GL + G VV + L G F C++ + VL
Sbjct: 48 LFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL-----------CELWTSLDVLCVT 96
Query: 79 LSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S+ TL VI ++R AIT ++ A I+ W+ + L++ LP+
Sbjct: 97 ASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPI 147
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 23 FLVCNLAAADFFMGLYL---GLLAVVDASTL-GEFRMYAIPWQMSAGCQMAGFMSVLSAE 78
+ +LA AD +GL + G VV + L G F C++ + VL
Sbjct: 48 LFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL-----------CELWTSLDVLCVT 96
Query: 79 LSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPL 129
S+ TL VI ++R AIT ++ A I+ W+ + L++ LP+
Sbjct: 97 ASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPI 147
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Query: 188 NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV---FVLPL--- 241
+ N RI + + ++V ++CW PI + + L+++ + TV F + L
Sbjct: 375 DRNLRRITRMVLVVVAVFIVCWTPIHIYVIIK----ALITIPETTFQTVSWHFCIALGYT 430
Query: 242 NSCCNPFLYAILTKQFKK----DCVMICKTIEE 270
NSC NP LYA L + FK+ C+ TIE+
Sbjct: 431 NSCLNPVLYAFLDENFKRCFREFCIPTSSTIEQ 463
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+ GN V++V++ + NLA AD L +V + M P+
Sbjct: 32 LFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSV-------NYLMGTWPF 84
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
+ C++ + + S+FTL ++++R A+ H + + ++A + VC W
Sbjct: 85 G-NILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWIL 143
Query: 121 AILMAVLPLF-GISDYRKYAT--CLPFETTTGVW-SLTYIVFLMFINGVAFLILMGCY 174
+ + + +F + YR+ + L F T W +L I +F + LI+ CY
Sbjct: 144 SSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCY 201
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 26/222 (11%)
Query: 1 MLGNGTVVFVLIFA---RSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYA 57
++GNG V+ V+ + RS D R +L+ AD + L AV DA F +
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRL---HLSVADLLFVITLPFWAV-DAVANWYFGNFL 118
Query: 58 IPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCG 117
C+ + ++ SV+ LA I+L+R AI HA + + L + V
Sbjct: 119 --------CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGV 170
Query: 118 WSFAILMAVLPLF---GISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMG-C 173
W A+L+ + P F +S+ C F ++V F + + LIL G
Sbjct: 171 WIPALLLTI-PDFIFANVSEADDRYICDRFYPND-----LWVVVFQFQHIMVGLILPGIV 224
Query: 174 YLKMYCAIRGSQAWNSNDS-RIAKRMALLVFTDLLCWFPIAL 214
L YC I + N + RI + + L ++ D ++ I +
Sbjct: 225 ILSCYCIIISKLSHNIFEMLRIDEGLRLKIYKDTEGYYTIGI 266
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 20/225 (8%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
++GN V+FV+I + NLA AD + + + V + M + P+
Sbjct: 37 LVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTV-------YLMNSWPF 89
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMH-LNKRLSLKHAGYIMVCGW- 118
C++ + + S+FTL +++++R A+ H + L+ R LK A I +C W
Sbjct: 90 G-DVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLK-AKIINICIWL 147
Query: 119 -SFAILMAVLPLFGI---SDYRKYATCLPFETTTGVWSLTYIVFLMFING--VAFLILMG 172
S ++ ++ + L G D L F W ++ +FI + LI++
Sbjct: 148 LSSSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIV 207
Query: 173 CYLKMYCAIRGSQAWNSNDS---RIAKRMALLVFTDLLCWFPIAL 214
CY M ++ + + N RI + + L ++ D ++ I +
Sbjct: 208 CYTLMILRLKSVRLLSGNIFEMLRIDEGLRLKIYKDTEGYYTIGI 252
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 188 NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGV--HLVSLEQAKIFTVFVLPLNSCC 245
+ N RI + + ++V ++CW PI + L G H + + F + + NS
Sbjct: 388 DRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSL 447
Query: 246 NPFLYAILTKQFKK 259
NP LYA L + FK+
Sbjct: 448 NPILYAFLDENFKR 461
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 1 MLGNGTVVFVLIFA---RSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYA 57
++GNG V+ V+ + RS D R +L+ AD + L AV DA F +
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRL---HLSVADLLFVITLPFWAV-DAVANWYFGNFL 118
Query: 58 IPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCG 117
C+ + ++ SV+ LA I+L+R AI HA + + L + V
Sbjct: 119 --------CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGV 170
Query: 118 WSFAILMAVLPLF---GISDYRKYATC---LPFETTTGVWSLTYIVFLMFINGVAFLILM 171
W A+L+ + P F +S+ C P + V+ +I+ + + G+ +++
Sbjct: 171 WIPALLLTI-PDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGI---VIL 226
Query: 172 GCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIAL 214
CY + + S + RI + + L ++ D ++ I +
Sbjct: 227 SCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGI 269
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 1 MLGNGTVVFVLIFA---RSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYA 57
++GNG V+ V+ + RS D R +L+ AD + L AV DA F +
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRL---HLSVADLLFVITLPFWAV-DAVANWYFGNFL 118
Query: 58 IPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCG 117
C+ + ++ SV+ LA I+L+R AI HA + + L + V
Sbjct: 119 --------CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGV 170
Query: 118 WSFAILMAVLPLF---GISDYRKYATC---LPFETTTGVWSLTYIVFLMFINGVAFLILM 171
W A+L+ + P F +S+ C P + V+ +I+ + + G+ +++
Sbjct: 171 WIPALLLTI-PDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGI---VIL 226
Query: 172 GCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIAL 214
CY + + S + RI + + L ++ D ++ I +
Sbjct: 227 SCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGI 269
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 184 SQAWNSNDSRIAKRMALL--------VFTDLLCWFPIALVALTAI-CGVHLVS-LEQAKI 233
+ W++ SR ++ +ALL VF + CW P+ ++ L + C V L +A+
Sbjct: 403 TGTWDAYASRSSENVALLKTVIIVLSVF--IACWAPLFILLLLDVGCKVKTCDILFRAEY 460
Query: 234 FTVFVLPLNSCCNPFLYAILTKQFKKDCVMI 264
F V + LNS NP +Y + K+ ++ + I
Sbjct: 461 FLVLAV-LNSGTNPIIYTLTNKEMRRAFIRI 490
>pdb|3GB5|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn
pdb|3GFD|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GFD|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GH8|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|C Chain C, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|D Chain D, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|E Chain E, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|F Chain F, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|G Chain G, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|H Chain H, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
Length = 259
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 215 VALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTK 255
++++ CG+ L +L+ A + TV PLN C P L +L +
Sbjct: 179 ISVSIACGLLLAALQNAGLVTVTTTPLN--CGPRLRVLLGR 217
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 208 CWFPIALVALTAICGVHLVSLEQAKIFTVFVLPL-------NSCCNPFLYAILTKQFKKD 260
CW PI + + LV + + V L L NS NP LYA L + FK+
Sbjct: 392 CWAPIHIFVIVW----TLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRC 447
Query: 261 CVMICKT 267
+C+T
Sbjct: 448 FRQLCRT 454
>pdb|2KI9|A Chain A, Human Cannabinoid Receptor-2 Helix 6
Length = 33
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 191 DSRIAKRMALLVFTDLLCWFPI 212
D R+AK + L++ L+CWFP+
Sbjct: 1 DVRLAKTLGLVLAVLLICWFPV 22
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,290,819
Number of Sequences: 62578
Number of extensions: 455046
Number of successful extensions: 1079
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 56
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)