Query psy6681
Match_columns 537
No_of_seqs 239 out of 2196
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 00:22:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 2E-40 4.4E-45 335.7 17.0 265 1-275 50-343 (423)
2 PHA03234 DNA packaging protein 100.0 3.5E-37 7.6E-42 320.1 25.9 254 1-268 47-317 (338)
3 PHA03235 DNA packaging protein 100.0 2.5E-35 5.4E-40 313.2 28.8 254 1-267 47-323 (409)
4 PHA02834 chemokine receptor-li 100.0 1.6E-34 3.5E-39 298.6 24.8 254 1-268 43-310 (323)
5 KOG4220|consensus 100.0 7.8E-37 1.7E-41 308.6 3.4 260 1-272 45-492 (503)
6 PHA02638 CC chemokine receptor 100.0 2.3E-33 5.1E-38 299.1 27.0 256 1-269 113-399 (417)
7 PF00001 7tm_1: 7 transmembran 100.0 9.7E-32 2.1E-36 262.7 21.7 239 3-250 1-257 (257)
8 PHA03087 G protein-coupled che 100.0 1.8E-31 3.9E-36 276.8 24.7 259 1-270 55-326 (335)
9 KOG2087|consensus 100.0 1.1E-31 2.3E-36 269.9 6.9 269 1-270 39-309 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 1E-20 2.2E-25 189.6 18.4 251 1-265 5-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.8 3E-18 6.5E-23 176.6 22.4 266 1-267 11-317 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.6 1.8E-14 4E-19 145.6 19.7 252 1-265 8-273 (274)
13 PF10323 7TM_GPCR_Srv: Serpent 99.6 5.1E-14 1.1E-18 143.1 18.7 257 4-267 12-283 (283)
14 PF05462 Dicty_CAR: Slime mold 99.6 3.5E-13 7.6E-18 137.4 23.7 242 1-269 21-272 (303)
15 PF05296 TAS2R: Mammalian tast 99.3 2.1E-10 4.5E-15 117.7 22.8 257 1-268 21-302 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.2 6E-10 1.3E-14 114.4 20.2 248 3-267 49-307 (313)
17 PF10317 7TM_GPCR_Srd: Serpent 99.0 2.6E-08 5.7E-13 101.8 20.3 255 2-263 14-292 (292)
18 PF10326 7TM_GPCR_Str: Serpent 98.9 4.4E-10 9.5E-15 115.4 1.0 257 2-262 14-307 (307)
19 PF03402 V1R: Vomeronasal orga 98.8 5.8E-08 1.3E-12 97.0 13.4 232 16-261 6-263 (265)
20 PF02118 Srg: Srg family chemo 98.7 4.9E-07 1.1E-11 91.1 17.0 253 2-260 13-274 (275)
21 PF10292 7TM_GPCR_Srab: Serpen 98.7 1.4E-05 3.1E-10 82.9 26.5 260 4-266 34-305 (324)
22 PF11710 Git3: G protein-coupl 98.7 1.6E-06 3.5E-11 83.7 17.6 160 15-186 30-199 (201)
23 KOG4193|consensus 98.6 3.2E-06 7E-11 93.8 20.6 225 9-269 342-583 (610)
24 PF02101 Ocular_alb: Ocular al 98.6 3.5E-06 7.6E-11 86.6 19.1 183 22-220 68-268 (405)
25 KOG4564|consensus 98.4 1.6E-05 3.5E-10 85.0 17.6 248 7-271 165-423 (473)
26 PF10318 7TM_GPCR_Srh: Serpent 98.3 3.3E-05 7.1E-10 79.2 18.4 257 3-267 20-302 (302)
27 PF10316 7TM_GPCR_Srbc: Serpen 98.3 7.6E-05 1.7E-09 75.4 19.3 212 2-218 21-237 (273)
28 PF10327 7TM_GPCR_Sri: Serpent 98.2 1.7E-05 3.6E-10 81.6 13.7 254 2-260 24-302 (303)
29 PF10319 7TM_GPCR_Srj: Serpent 98.1 0.00011 2.3E-09 74.7 16.7 257 2-260 20-309 (310)
30 PF00002 7tm_2: 7 transmembran 97.9 1.9E-06 4.1E-11 85.2 0.0 129 5-145 19-147 (242)
31 PF02117 7TM_GPCR_Sra: Serpent 97.8 0.0049 1.1E-07 64.2 22.5 232 20-260 55-302 (328)
32 PF03125 Sre: C. elegans Sre G 97.7 0.026 5.6E-07 59.6 25.8 180 68-270 125-324 (365)
33 PF04789 DUF621: Protein of un 97.6 0.0045 9.7E-08 61.5 17.8 248 3-262 31-293 (305)
34 PF01534 Frizzled: Frizzled/Sm 96.9 0.079 1.7E-06 55.0 19.0 210 3-216 25-244 (328)
35 PF03383 Serpentine_r_xa: Caen 96.3 0.0013 2.8E-08 60.3 0.5 130 23-156 5-141 (153)
36 PF11970 Git3_C: G protein-cou 96.2 0.0085 1.8E-07 48.5 4.8 69 188-256 4-73 (76)
37 PF02076 STE3: Pheromone A rec 95.9 0.95 2.1E-05 46.1 19.5 201 2-219 6-221 (283)
38 PF10322 7TM_GPCR_Sru: Serpent 95.7 0.11 2.4E-06 53.5 11.4 135 66-207 103-254 (307)
39 KOG4289|consensus 94.4 0.29 6.3E-06 58.0 11.2 169 64-262 2224-2399(2531)
40 PF06681 DUF1182: Protein of u 92.8 0.28 6E-06 47.0 6.3 110 64-183 115-224 (226)
41 PF06454 DUF1084: Protein of u 89.1 28 0.00061 35.4 18.6 71 152-222 162-232 (281)
42 PF05296 TAS2R: Mammalian tast 86.1 14 0.0003 38.0 13.2 25 195-219 229-253 (303)
43 PF02175 7TM_GPCR_Srb: Serpent 83.3 50 0.0011 32.6 14.7 43 64-106 83-125 (236)
44 COG3083 Predicted hydrolase of 69.2 1.1E+02 0.0024 33.7 13.6 56 68-125 47-102 (600)
45 PF10323 7TM_GPCR_Srv: Serpent 60.2 75 0.0016 32.2 10.3 17 115-131 118-134 (283)
46 PF06638 Strabismus: Strabismu 59.5 56 0.0012 35.7 9.4 31 103-133 90-120 (505)
47 PF10325 7TM_GPCR_Srz: Serpent 54.5 2.3E+02 0.0049 28.1 15.3 111 70-185 86-197 (267)
48 PF00003 7tm_3: 7 transmembran 51.3 35 0.00077 33.1 6.1 22 64-85 54-75 (238)
49 PF03552 Cellulose_synt: Cellu 47.3 3.6E+02 0.0078 31.2 13.7 31 104-134 565-596 (720)
50 PF13853 7tm_4: Olfactory rece 41.1 2.2 4.8E-05 38.8 -4.0 101 111-212 4-114 (144)
51 PF09726 Macoilin: Transmembra 33.9 1.1E+02 0.0023 35.5 7.1 35 64-98 60-95 (697)
52 PF06664 MIG-14_Wnt-bd: Wnt-bi 32.3 5.5E+02 0.012 26.0 19.4 17 236-252 273-289 (298)
53 PF05478 Prominin: Prominin; 30.8 1.7E+02 0.0036 34.6 8.2 67 156-222 414-487 (806)
54 PRK10263 DNA translocase FtsK; 30.3 3.9E+02 0.0085 33.2 11.1 24 64-87 67-90 (1355)
55 PF14362 DUF4407: Domain of un 29.9 2E+02 0.0043 29.3 7.8 20 79-98 52-71 (301)
56 PF03699 UPF0182: Uncharacteri 29.5 9.9E+02 0.021 28.1 19.3 27 189-215 194-220 (774)
57 PRK00068 hypothetical protein; 29.2 1.1E+03 0.024 28.5 20.3 22 192-213 209-230 (970)
58 PF08867 FRG: FRG domain; Int 29.0 21 0.00045 30.5 0.3 14 396-409 65-78 (104)
59 PF04238 DUF420: Protein of un 27.7 3.5E+02 0.0077 24.3 8.0 28 188-215 31-58 (133)
60 KOG4220|consensus 27.2 8.4E+02 0.018 26.5 13.7 77 189-265 142-228 (503)
61 PRK12438 hypothetical protein; 26.7 1.2E+03 0.026 28.2 15.8 24 191-214 206-229 (991)
62 PF14494 DUF4436: Domain of un 26.5 2.3E+02 0.005 28.5 7.3 18 113-130 200-217 (256)
63 KOG2575|consensus 26.4 3.4E+02 0.0074 29.2 8.6 26 191-216 254-279 (510)
64 PLN02915 cellulose synthase A 26.3 1.2E+03 0.027 28.2 14.7 27 108-134 888-914 (1044)
65 PF15383 TMEM237: Transmembran 25.6 2.9E+02 0.0063 27.7 7.7 43 85-128 153-196 (253)
66 PF05297 Herpes_LMP1: Herpesvi 24.5 25 0.00054 35.5 0.0 25 152-176 103-127 (381)
67 PF11188 DUF2975: Protein of u 24.3 4.6E+02 0.01 22.6 12.2 57 160-216 29-85 (136)
68 PF10066 DUF2304: Uncharacteri 22.5 5.1E+02 0.011 22.4 10.7 63 174-240 16-78 (115)
69 PF00375 SDF: Sodium:dicarboxy 22.3 5.3E+02 0.011 27.3 9.6 103 163-266 137-247 (390)
70 PF03821 Mtp: Golgi 4-transmem 21.8 7.9E+02 0.017 24.4 10.1 85 18-103 61-149 (233)
71 PRK13743 conjugal transfer pro 20.5 1.5E+02 0.0032 26.5 3.9 64 101-171 32-95 (141)
72 PF06609 TRI12: Fungal trichot 20.0 1.3E+03 0.028 26.2 14.3 30 82-111 283-312 (599)
73 KOG2302|consensus 20.0 1.4E+03 0.029 28.0 12.2 23 230-252 1362-1384(1956)
No 1
>KOG4219|consensus
Probab=100.00 E-value=2e-40 Score=335.72 Aligned_cols=265 Identities=20% Similarity=0.344 Sum_probs=218.1
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL 79 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~ 79 (537)
++||++|++++..+|++|+.+|+||+|||+||++++++..++...+... ..|.+| .+|++..|+..+...+
T Consensus 50 v~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--------~~W~~G~f~C~f~nf~~itav~v 121 (423)
T KOG4219|consen 50 VVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--------QEWYFGSFYCRFVNFFPITAVFV 121 (423)
T ss_pred HhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------hccccccceeeeccccchhhhhH
Confidence 5799999999999999999999999999999999999988887766643 349998 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc-------cCcceecccCCCC----
Q psy6681 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY-------RKYATCLPFETTT---- 148 (537)
Q Consensus 80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~-------~~~~~C~~~~~~~---- 148 (537)
|+++|++||+|||.||.||++ .+.+++.+++++++||++++++++|..+..... .....|...+.+.
T Consensus 122 SVfTlvAiA~DRy~AIi~Pl~--~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~ 199 (423)
T KOG4219|consen 122 SVFTLVAIAIDRYMAIIHPLQ--PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPT 199 (423)
T ss_pred hHHHHHHHHHHHHHHHhhhcc--cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCc
Confidence 999999999999999999998 448999999999999999999998776654321 1123443322221
Q ss_pred cch----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------cccccchhhhhhHHHHHHHHHHhhHHHHH
Q psy6681 149 GVW----SLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ----------AWNSNDSRIAKRMALLVFTDLLCWFPIAL 214 (537)
Q Consensus 149 ~~~----~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~----------~~~~~~~r~~k~L~~ivliFllcwlP~~I 214 (537)
... +.+..++.++.+++|++++.++|..|.+++|+.+ ++.+.++|+.||+++++++|.+||+||++
T Consensus 200 ~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~ 279 (423)
T KOG4219|consen 200 ENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHI 279 (423)
T ss_pred chhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhH
Confidence 111 1255667777799999999999999999999753 22356789999999999999999999999
Q ss_pred HHHHHHHccc---ccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccccccccc
Q psy6681 215 VALTAICGVH---LVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTR 275 (537)
Q Consensus 215 ~~il~~~~~~---~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~~r~~~ 275 (537)
.+++.....+ .......+....|+++.|+++||+||+++|++||.+|++.|+||...+...
T Consensus 280 y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp~v~~~k 343 (423)
T KOG4219|consen 280 YFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCPFVKGTK 343 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheeeeecccc
Confidence 9998765422 123556677889999999999999999999999999999999986444333
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=3.5e-37 Score=320.07 Aligned_cols=254 Identities=17% Similarity=0.204 Sum_probs=193.6
Q ss_pred CchHHHHHHHHH--hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHH
Q psy6681 1 MLGNGTVVFVLI--FARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSA 77 (537)
Q Consensus 1 LvGN~lVl~vi~--~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~ 77 (537)
++||++|++++. +++++|+++|+|++|||+||+++++.++|..... ...|.+| ..|++.+++..+..
T Consensus 47 l~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~----------~~~w~fG~~lCk~~~~~~~~~~ 116 (338)
T PHA03234 47 IPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR----------EALFNFNQAFCQCVLFIYHASC 116 (338)
T ss_pred hhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCccCchhHHHHHHHHHHHHH
Confidence 579999999664 5566689999999999999999988766654321 1248888 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeeccc---CcceecccCCCCcchhhh
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYR---KYATCLPFETTTGVWSLT 154 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~---~~~~C~~~~~~~~~~~~~ 154 (537)
++|++++++||+|||+||++|.+++. +.++....++++|++++++++|+++...... ....|...+.....+..+
T Consensus 117 ~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 194 (338)
T PHA03234 117 SYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLF 194 (338)
T ss_pred HHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHHH
Confidence 99999999999999999999988642 3344445566679999999988876543221 224687655332222222
Q ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcc----ccc-
Q psy6681 155 YI---VFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGV----HLV- 226 (537)
Q Consensus 155 ~~---~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~----~~~- 226 (537)
.. +...+.+++|++++++||.+|.+++++.+ .++++|++|++++++++|++||+||++..++..... ...
T Consensus 195 ~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~--~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~ 272 (338)
T PHA03234 195 IAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT--EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCF 272 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcch
Confidence 11 12223468999999999999999998753 345689999999999999999999999887654321 111
Q ss_pred ---chHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhcc
Q psy6681 227 ---SLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTI 268 (537)
Q Consensus 227 ---~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~ 268 (537)
.......++.+++++||++||+||++++++||+++++++++.
T Consensus 273 ~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 273 GLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 123445678889999999999999999999999999888754
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=2.5e-35 Score=313.15 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=189.4
Q ss_pred CchHHHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSK--IDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSA 77 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~l--r~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~ 77 (537)
++||++|++++..++++ ++.+++|++|||++|+++++ .+|..+... ...|..| ..|++.+++..++.
T Consensus 47 iigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~-~lP~~i~~~---------~~~~~~g~~~Ck~~~~l~~~~~ 116 (409)
T PHA03235 47 GPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVF-VLPFIMLSN---------QGLLSGSVAGCKFASLLYYASC 116 (409)
T ss_pred HHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHH-HHHHHHHhc---------CccccCCCCeehhHHHHHHHHH
Confidence 46899999986543333 35778999999999998754 555544311 1113334 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheee-----cc----cCcceecccCCCC
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGIS-----DY----RKYATCLPFETTT 148 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~-----~~----~~~~~C~~~~~~~ 148 (537)
.+|++++++||+|||++|++|.++ ...+++++.++++++|++++++++|+.+... .. .....|.......
T Consensus 117 ~~Si~tL~~ISiDRY~aI~~p~~~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 195 (409)
T PHA03235 117 TVGFATVALIAADRYRVIHQRTRA-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRAD 195 (409)
T ss_pred HHHHHHHHHHHHHHHHHeechhhc-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCch
Confidence 999999999999999999999865 4456889999999999999999988654321 11 1234686544332
Q ss_pred cch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHccc-
Q psy6681 149 GVW---SLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVH- 224 (537)
Q Consensus 149 ~~~---~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~- 224 (537)
... ..+..++.++.|++|+++|++||.+|+++++++.+ ++++|..+++++++++|++||+||+++.++..+...
T Consensus 196 ~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~--~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~ 273 (409)
T PHA03235 196 QVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY--KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLI 273 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 211 11223344555899999999999999999987653 234677888888899999999999998887654211
Q ss_pred ---c----cchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhc
Q psy6681 225 ---L----VSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT 267 (537)
Q Consensus 225 ---~----~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~ 267 (537)
. .....+..+..++.++|+++||+||++++++||++++++++.
T Consensus 274 ~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 274 WPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 0 112345667888999999999999999999999999998865
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=298.63 Aligned_cols=254 Identities=18% Similarity=0.310 Sum_probs=192.2
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL 79 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~ 79 (537)
++||+++++++.+++. +++.|+|++|||++|++.++ .+|..+.... .+|.+| ..|++.+++..++..+
T Consensus 43 ~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~-~lP~~i~~~~---------~~w~~g~~~C~~~~~~~~~~~~~ 111 (323)
T PHA02834 43 LIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVF-SFPFIIHNDL---------NEWIFGEFMCKLVLGVYFVGFFS 111 (323)
T ss_pred HhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHH-HHHHHHHHHc---------CCcCCcchHHHhHHHHHHHHHHH
Confidence 5799999999887554 46789999999999998744 5555443221 148888 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc--cCcceecccCCCCc-chhhhhH
Q psy6681 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY--RKYATCLPFETTTG-VWSLTYI 156 (537)
Q Consensus 80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~--~~~~~C~~~~~~~~-~~~~~~~ 156 (537)
|++++++||+|||++|++|++++. .+.+++.++++++|++++++++|+++++... .....|........ .+...+.
T Consensus 112 Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 190 (323)
T PHA02834 112 NMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFN 190 (323)
T ss_pred HHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCCccchHHHHHHH
Confidence 999999999999999999998644 3557777888899999999998887654322 22346853222111 1111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHccccc---------
Q psy6681 157 -VFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLV--------- 226 (537)
Q Consensus 157 -~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~--------- 226 (537)
...++.|++|++++++||.+|+++++++++ ++++|.+|++++++++|++||+||++..++..+.....
T Consensus 191 ~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~--~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~ 268 (323)
T PHA02834 191 FEINIFGIVIPLIILIYCYSKILYTLKNCKN--KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFK 268 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHH
Confidence 223456889999999999999999988653 45678999999999999999999999887755432100
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhcc
Q psy6681 227 SLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTI 268 (537)
Q Consensus 227 ~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~ 268 (537)
.......+..++.++|+++||+||++++++||+++++++++.
T Consensus 269 ~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~ 310 (323)
T PHA02834 269 KIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRT 310 (323)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhh
Confidence 011123467789999999999999999999999999988754
No 5
>KOG4220|consensus
Probab=100.00 E-value=7.8e-37 Score=308.61 Aligned_cols=260 Identities=18% Similarity=0.267 Sum_probs=222.9
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL 79 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~ 79 (537)
++||++|++.+.-+++++++.|+||++||+|||+++++.+++.+++..... |..| ..|.++..+.++...+
T Consensus 45 v~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~--------W~LG~~~CdlWLalDYvaSNA 116 (503)
T KOG4220|consen 45 VVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGY--------WPLGPLVCDLWLALDYVASNA 116 (503)
T ss_pred hhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcc--------cccchHHHHHHHHHHHHhhhh
Confidence 579999999999999999999999999999999999999988887775543 9999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc-----cCcceecccCCCCcchhhh
Q psy6681 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY-----RKYATCLPFETTTGVWSLT 154 (537)
Q Consensus 80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~-----~~~~~C~~~~~~~~~~~~~ 154 (537)
|++.+..|++|||+.|.+|+.|....|.+++..+|+++|++++++-.|.++.|... ...+.|....-+. ..+
T Consensus 117 SVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsn---p~i 193 (503)
T KOG4220|consen 117 SVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSN---PAI 193 (503)
T ss_pred hhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecC---cee
Confidence 99999999999999999999999999999999999999999999997766666543 2456786533321 233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-----------------------------------------------
Q psy6681 155 YIVFLMFINGVAFLILMGCYLKMYCAIRGSQAW----------------------------------------------- 187 (537)
Q Consensus 155 ~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~----------------------------------------------- 187 (537)
.+...+..|.+|..+|.++|++|++..+++.+.
T Consensus 194 TfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~~~~~~ 273 (503)
T KOG4220|consen 194 TFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPLTNGCI 273 (503)
T ss_pred ehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccCCCCcc
Confidence 444556668999999999999999998631000
Q ss_pred --------------------------------------------------------------------------------
Q psy6681 188 -------------------------------------------------------------------------------- 187 (537)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (537)
T Consensus 274 ~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~~p~s~ 353 (503)
T KOG4220|consen 274 SNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQMLPKSD 353 (503)
T ss_pred ccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccCCCCCC
Confidence
Q ss_pred -------------------------------------------------------cccchhhhhhHHHHHHHHHHhhHHH
Q psy6681 188 -------------------------------------------------------NSNDSRIAKRMALLVFTDLLCWFPI 212 (537)
Q Consensus 188 -------------------------------------------------------~~~~~r~~k~L~~ivliFllcwlP~ 212 (537)
..+|+|+++++..|.+.|++||.||
T Consensus 354 sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIiTWtPY 433 (503)
T KOG4220|consen 354 SCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFILTWTPY 433 (503)
T ss_pred cccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHcccc
Confidence 0347899999999999999999999
Q ss_pred HHHHHHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhcccccc
Q psy6681 213 ALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESR 272 (537)
Q Consensus 213 ~I~~il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~~r 272 (537)
.|+.++..+... +.++.+..+.+||.|+||.+||+.|++.|+.||+.|++++.|..+.+
T Consensus 434 NImVlv~tFC~~-CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~ 492 (503)
T KOG4220|consen 434 NIMVLVNTFCKN-CIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKR 492 (503)
T ss_pred eeeeehHhhccc-ccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeeccc
Confidence 999999988755 66888999999999999999999999999999999999998754443
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=299.10 Aligned_cols=256 Identities=16% Similarity=0.373 Sum_probs=198.9
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL 79 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~ 79 (537)
++||++|++++.+ |++|+++|+|++|||++|+++++.+ |..+.... ..|.+| ..|++..++...+..+
T Consensus 113 liGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~l-Pf~i~~~~---------~~W~fg~~~Ck~~~~l~~~~~~~ 181 (417)
T PHA02638 113 LFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDF-PFIIYNEF---------DQWIFGDFMCKVISASYYIGFFS 181 (417)
T ss_pred HHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHh---------ccccccccchhhHHHHHHHHHHH
Confidence 4799999988764 7889999999999999999886544 44333221 148888 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc---------c---CcceecccCCC
Q psy6681 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY---------R---KYATCLPFETT 147 (537)
Q Consensus 80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~---------~---~~~~C~~~~~~ 147 (537)
+++++++|++|||+||++|+++++..+++.++++++++|++++++++|+++..... . ....|......
T Consensus 182 Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 261 (417)
T PHA02638 182 NMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDN 261 (417)
T ss_pred HHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccc
Confidence 99999999999999999999988777888888889999999999999988754321 1 13367654322
Q ss_pred Cc----chhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHc
Q psy6681 148 TG----VWSLTY-IVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICG 222 (537)
Q Consensus 148 ~~----~~~~~~-~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~ 222 (537)
.. .+...+ ....++.+++|++++++||.+|++++++.++ ++++|.+|++++++++|++||+||.++.++..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~--~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~ 339 (417)
T PHA02638 262 EKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK--SKKTKSIIIVSIIIICSLICWIPLNIVILFATMY 339 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 21 111112 2233445789999999999999999987553 3467888999999999999999999998877653
Q ss_pred cc----------c---cchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccc
Q psy6681 223 VH----------L---VSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIE 269 (537)
Q Consensus 223 ~~----------~---~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~ 269 (537)
.. . ........++..++++|+|+||+||++.+++||+++++++++..
T Consensus 340 ~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 340 SFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 11 0 01234455778899999999999999999999999999886543
No 7
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=9.7e-32 Score=262.67 Aligned_cols=239 Identities=24% Similarity=0.464 Sum_probs=204.2
Q ss_pred hHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHHHH
Q psy6681 3 GNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAELSV 81 (537)
Q Consensus 3 GN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~Sv 81 (537)
||+++++++.++|+++++.++|++|||++|++.++..+|..+..... ..|..+ ..|++..++..++..++.
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--------~~~~~~~~~C~~~~~~~~~~~~~s~ 72 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--------DDWIFSSFLCRIFGFLFYFSSFSSI 72 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------SSCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--------ccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999888887766543 247777 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc--cC--cceecccCCCCcchhhhhHH
Q psy6681 82 FTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY--RK--YATCLPFETTTGVWSLTYIV 157 (537)
Q Consensus 82 ~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~--~~--~~~C~~~~~~~~~~~~~~~~ 157 (537)
+++++|++|||++|++|++|+...+++++..+++++|++++++++|+.++.... .. ...|........ ...++..
T Consensus 73 ~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~ 151 (257)
T PF00001_consen 73 FSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSS-SQIYFIY 151 (257)
T ss_dssp HHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSH-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999999999999999999999999999999999999999987763322 11 457877665544 3456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------------cccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccc
Q psy6681 158 FLMFINGVAFLILMGCYLKMYCAIRGSQAW------------NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHL 225 (537)
Q Consensus 158 ~~~~~f~iP~liii~~Y~~I~~~lrk~~~~------------~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~ 225 (537)
..++.+++|+++++++|.+|++.+++++++ .++++|.++++++++++|++||+|+.+..++.......
T Consensus 152 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~ 231 (257)
T PF00001_consen 152 FFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS 231 (257)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS
T ss_pred ccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCcc
Confidence 677778999999999999999999876543 25678999999999999999999999999988877553
Q ss_pred c-chHHHHHHHHHHhhhhhhHHHHHH
Q psy6681 226 V-SLEQAKIFTVFVLPLNSCCNPFLY 250 (537)
Q Consensus 226 ~-~~~~l~~i~~~l~~lns~iNPiIY 250 (537)
. .......+..++.++|+++||+||
T Consensus 232 ~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 232 SLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 2 467788899999999999999999
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.8e-31 Score=276.78 Aligned_cols=259 Identities=19% Similarity=0.306 Sum_probs=202.9
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL 79 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~ 79 (537)
++||+++++++.++ ++|++.|+|+.|||++|++.++..++. +... ...+|.+| ..|++..++...+..+
T Consensus 55 l~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~-~~~~--------~~~~~~~~~~~C~~~~~~~~~~~~~ 124 (335)
T PHA03087 55 LVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQ-IYYY--------ILFQWSFGEFACKIVSGLYYIGFYN 124 (335)
T ss_pred HHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHH-HHHH--------hCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47999999999887 889999999999999999887654333 2222 12246666 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc--cCcceecccCCCCc-chhhhhH
Q psy6681 80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY--RKYATCLPFETTTG-VWSLTYI 156 (537)
Q Consensus 80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~--~~~~~C~~~~~~~~-~~~~~~~ 156 (537)
|++++++|++|||++|++|++|....+.+++.++++++|+++++.++|++..+... .....|...+.... .+..++.
T Consensus 125 S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 204 (335)
T PHA03087 125 SMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFIN 204 (335)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999888777655422 23446765554222 2122222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcc---c-c----cc
Q psy6681 157 V-FLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGV---H-L----VS 227 (537)
Q Consensus 157 ~-~~~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~---~-~----~~ 227 (537)
+ ...+.+++|+++++++|.+|++.++++++ .++++|+.|++++++++|++||+|+.+..++..... . . ..
T Consensus 205 ~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~-~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~ 283 (335)
T PHA03087 205 FEINIIGMLIPLTILLYCYSKILITLKGINK-SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKY 283 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHH
Confidence 2 33455789999999999999999988753 356789999999999999999999999877654321 1 1 01
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhcccc
Q psy6681 228 LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEE 270 (537)
Q Consensus 228 ~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~ 270 (537)
......+..++..+|+++||+||++++++||++++++++....
T Consensus 284 ~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~ 326 (335)
T PHA03087 284 IQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFT 326 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhh
Confidence 2334456778889999999999999999999999999975433
No 9
>KOG2087|consensus
Probab=99.97 E-value=1.1e-31 Score=269.93 Aligned_cols=269 Identities=46% Similarity=0.800 Sum_probs=242.6
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELS 80 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~S 80 (537)
++||++|++.....+...++..++++|||++|+++++........+....+++..+...|+.|..|.+.||+..++..+|
T Consensus 39 i~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElS 118 (363)
T KOG2087|consen 39 IVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELS 118 (363)
T ss_pred hccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 47999999999988888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCCcchhh-hhHHHH
Q psy6681 81 VFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSL-TYIVFL 159 (537)
Q Consensus 81 v~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~~ 159 (537)
+++++++++||++.|.+|++-.+....+.+..+++.+|+.++++++.|+++...|.....|.+.+..... .. +|.+.+
T Consensus 119 v~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~~vClPL~~~~~~-s~g~y~~~~ 197 (363)
T KOG2087|consen 119 VFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGASSVCLPLHIEEPL-STGYYLVAL 197 (363)
T ss_pred HHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcccceeeecccCCcc-chhHHHHHH
Confidence 9999999999999999999988888888899999999999999999999999999999999987765544 34 788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccch-hhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHHHHHHHHH
Q psy6681 160 MFINGVAFLILMGCYLKMYCAIRGSQAWNSNDS-RIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFV 238 (537)
Q Consensus 160 ~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~-r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l~~i~~~l 238 (537)
+.+..+.+++|.++|++|+..+++......... .++|.+++++++-++||.|..++.+...++...........+..++
T Consensus 198 l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~f 277 (363)
T KOG2087|consen 198 LGLNLLAFIIIAFSYGKIYCSLRKGDLSATLISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFF 277 (363)
T ss_pred HHHHHHHHHHHHHHhhhhheeeecCCCccccchhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEE
Confidence 888999999999999999999999876655554 8999999999999999999999999998887766665555666777
Q ss_pred hhhhhhHHHHHHHhcchHHHHHHHHHHhcccc
Q psy6681 239 LPLNSCCNPFLYAILTKQFKKDCVMICKTIEE 270 (537)
Q Consensus 239 ~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~ 270 (537)
.-+|+++||++|.++++.||+.++.++.+...
T Consensus 278 lPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~ 309 (363)
T KOG2087|consen 278 LPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGL 309 (363)
T ss_pred EEcccccCchhHHHcCHHHHHHHHHHHhhcch
Confidence 88999999999999999999999998876543
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.86 E-value=1e-20 Score=189.59 Aligned_cols=251 Identities=14% Similarity=0.201 Sum_probs=184.9
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELS 80 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~S 80 (537)
++||+.+++++.++|++|++.+++++.+|++|++.++..++.......... . ....|-...+...++..+.
T Consensus 5 ~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~~--i-------~~~~Cf~~~~~~~f~~~~q 75 (257)
T PF10320_consen 5 LFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFRDHQ--I-------TRSECFWQIFFYIFFQCAQ 75 (257)
T ss_pred EEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHhhee--c-------cHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999887777664331111 0 0157999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCCcchhhhhHHHHH
Q psy6681 81 VFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLM 160 (537)
Q Consensus 81 v~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 160 (537)
...+.+|++||++||+.|++|+...+.+......+...+++....+.. +...+.+....|.+...........+.....
T Consensus 76 s~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~C~pp~a~~~~~~~~~~~~~~ 154 (257)
T PF10320_consen 76 SVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIG-FLYRDDETIVICNPPLAFHGTASQIWSYSNI 154 (257)
T ss_pred HHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhhe-eEecCCcccccCCCccccCccHHHHHHHHHH
Confidence 999999999999999999999999998866666666666666554322 2223334567897755443332333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc-ccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHH-cccccchHHHHHHHHHH
Q psy6681 161 FINGVAFLILMGCYLKMYCAIRGSQA-WNSNDSRIAKRMALLVFTDLLCWFPIALVALTAIC-GVHLVSLEQAKIFTVFV 238 (537)
Q Consensus 161 ~~f~iP~liii~~Y~~I~~~lrk~~~-~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~-~~~~~~~~~l~~i~~~l 238 (537)
+..+++++.|...+..++++.+ ..++++|+.|.+.+++++|+++|.-..+...+... .........+.....++
T Consensus 155 ----~inv~tvivY~i~~~~~~~k~~~~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~ 230 (257)
T PF10320_consen 155 ----IINVITVIVYIITIIIFKRKSRSNSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIF 230 (257)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2223345556656665655543 56678999999999999999999988777665443 33322333455566788
Q ss_pred hhhhhhHHHHHHHhcchHHHHHHHHHH
Q psy6681 239 LPLNSCCNPFLYAILTKQFKKDCVMIC 265 (537)
Q Consensus 239 ~~lns~iNPiIY~~~nk~FR~~l~~l~ 265 (537)
..++.+.|.+||.++|+|||++++++|
T Consensus 231 v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 231 VNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 899999999999999999999999875
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.81 E-value=3e-18 Score=176.65 Aligned_cols=266 Identities=14% Similarity=0.108 Sum_probs=192.1
Q ss_pred CchHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccccccc-ccchhhHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKID-VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRM-YAIPWQMS-AGCQMAGFMSVLSA 77 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~-~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~-~~~~W~~g-~~C~v~~~l~~~~~ 77 (537)
+++|++-++++.+ |.||+ +.|.++..+|++|++..+...+..+.......+... ......+. ....+...+...+.
T Consensus 11 ~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~ 89 (318)
T PF10324_consen 11 LFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFR 89 (318)
T ss_pred HHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4689999998875 67775 899999999999999998877777654443311000 01111111 34455678888999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcc--ccccccchhhhHHHHHHHHHHHHhhhhhheeecc------cCcceecccCCC--
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHL--NKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY------RKYATCLPFETT-- 147 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y--~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~------~~~~~C~~~~~~-- 147 (537)
.+|.|..++||+.|+++|.+|+.. ++..+.+.+.++++++++++.++.++..+...-. .+...|......
T Consensus 90 ~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~ 169 (318)
T PF10324_consen 90 RISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYT 169 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeecccccc
Confidence 999999999999999999999865 3566788888899999999998887766544322 123468622110
Q ss_pred Ccch---------------hhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCccc--------ccchhhhhhHHHHHH
Q psy6681 148 TGVW---------------SLTYIVFLMFI-NGVAFLILMGCYLKMYCAIRGSQAWN--------SNDSRIAKRMALLVF 203 (537)
Q Consensus 148 ~~~~---------------~~~~~~~~~~~-f~iP~liii~~Y~~I~~~lrk~~~~~--------~~~~r~~k~L~~ivl 203 (537)
...+ ...+.....++ -++|.++..++.+.+.+.+|+.++++ +++.+.+++++++++
T Consensus 170 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~tt~li~~~ti 249 (318)
T PF10324_consen 170 FPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSKSKKSDRTTKLILFMTI 249 (318)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccccccccchHHHHHHHHH
Confidence 0000 01122222233 57899999999999999998755433 245678999999999
Q ss_pred HHHHhhHHHHHHHHHHHHcccc----cchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhc
Q psy6681 204 TDLLCWFPIALVALTAICGVHL----VSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT 267 (537)
Q Consensus 204 iFllcwlP~~I~~il~~~~~~~----~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~ 267 (537)
.|+++-+|..+..++..+.... .....+..+..++..+|+++|++||++|+.+||++++++|+|
T Consensus 250 ~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~ 317 (318)
T PF10324_consen 250 SFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGC 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhcc
Confidence 9999999999999887753221 123445567788899999999999999999999999999986
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.63 E-value=1.8e-14 Score=145.62 Aligned_cols=252 Identities=13% Similarity=0.104 Sum_probs=167.4
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELS 80 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~S 80 (537)
++.|.++++.+.+.+.++++.+.+..+.|++|++.++..+.+..-........ -.+| ..-.+.+.+...+...+
T Consensus 8 ~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~---~~~~---~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 8 IILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISF---LPSS---LNSIIFGFIGMFCYFIG 81 (274)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CchH---HHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999986554443322221111 0011 12345588899999999
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeec---ccCcceecccCCCCcchhhhhHH
Q psy6681 81 VFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISD---YRKYATCLPFETTTGVWSLTYIV 157 (537)
Q Consensus 81 v~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~---~~~~~~C~~~~~~~~~~~~~~~~ 157 (537)
.++.++||++|++||+.|.+|++..+.+.+.++++++|++++....+..+..+. +..+..-+.+ ........+...
T Consensus 82 ~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~-~~~~~C~~~~~~ 160 (274)
T PF10328_consen 82 PLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY-PTDPPCGNYSWY 160 (274)
T ss_pred HHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec-CCCCccchhhhH
Confidence 999999999999999999999999999999999999999999777555443221 1122222221 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHccccc
Q psy6681 158 FLMFINGVAFLILMGCYLKMYCAIRGS-----------QAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLV 226 (537)
Q Consensus 158 ~~~~~f~iP~liii~~Y~~I~~~lrk~-----------~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~ 226 (537)
.......+-.+++.+++..++.++++. ++++++|.+..+..+..-++|++.++-+.+..-+. .
T Consensus 161 ~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~------~ 234 (274)
T PF10328_consen 161 FDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS------S 234 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------c
Confidence 112222333444445555555555421 13445677778888888888888887776654432 1
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHH
Q psy6681 227 SLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMIC 265 (537)
Q Consensus 227 ~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~ 265 (537)
.....+..+.+...+..++|++|+...|+|+|+.+++..
T Consensus 235 ~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 235 NRWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred ccHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 233334444454677788999999999999999987643
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.59 E-value=5.1e-14 Score=143.13 Aligned_cols=257 Identities=14% Similarity=0.148 Sum_probs=163.9
Q ss_pred HHHHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHH
Q psy6681 4 NGTVVFVLIFARSK----IDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAEL 79 (537)
Q Consensus 4 N~lVl~vi~~~k~l----r~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~ 79 (537)
.+++++++.+.|+. +++.+.++++-+++|++..+...................+.++ ..-++.....+....+
T Consensus 12 y~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~~~y~~~~~ 88 (283)
T PF10323_consen 12 YIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQT---YYAAIYYNIAYYFLYI 88 (283)
T ss_pred HHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc---hhHHHHHHHHHHHHHH
Confidence 35566666665543 5888999999999999998765544433332111111111111 2245556666777788
Q ss_pred HHHHHHHHHHHHHHHhhccC-ccccccccchhhhHHHHHHHHHHHHhhhhhheeecc--cCcceecccCCCCcchhhhhH
Q psy6681 80 SVFTLAVITLERNYAITHAM-HLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY--RKYATCLPFETTTGVWSLTYI 156 (537)
Q Consensus 80 Sv~~l~~IsIDRYiaI~~Pl-~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~--~~~~~C~~~~~~~~~~~~~~~ 156 (537)
..+..+++|+.||.||++|. ++.+..+..+..+++++-|+.+++++++.+. ..+. +.... .....+... ...+.
T Consensus 89 ~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~-~~~~~f~~~~~-~~~~~d~~~-~~~~~ 165 (283)
T PF10323_consen 89 QCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFF-DTDFYFDNEEN-MSLFVDPEF-IQRNF 165 (283)
T ss_pred HHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeec-cCceeeecccc-eeeecCHHH-HHHHH
Confidence 88999999999999999999 8888899999999999999999999976333 2221 11111 221222222 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------cccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccch
Q psy6681 157 VFLMFINGVAFLILMGCYLKMYCAIRGSQ--------AWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSL 228 (537)
Q Consensus 157 ~~~~~~f~iP~liii~~Y~~I~~~lrk~~--------~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~ 228 (537)
....+...+-+++.+++|..++..+||+. +..++|.+.+.+.+++++++++.. -|++...+.....+....
T Consensus 166 ~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~-~~~~~~~~~~~~~~~~~~ 244 (283)
T PF10323_consen 166 LIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVIL-VYYIFSNYFAQNFNTDPI 244 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccchHH
Confidence 44445556778889999999999999532 223445555555544444433332 233333333333222212
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhc
Q psy6681 229 EQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT 267 (537)
Q Consensus 229 ~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~ 267 (537)
.....+..++..+.+.+||+.-.+.|+++|+.+++.++|
T Consensus 245 ~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 245 FYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 233346667788999999999999999999999998875
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.58 E-value=3.5e-13 Score=137.42 Aligned_cols=242 Identities=13% Similarity=0.135 Sum_probs=163.5
Q ss_pred CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELS 80 (537)
Q Consensus 1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~S 80 (537)
++|-+++++.++..|++|++.+.+++-++++|++..+..+..... .. . -..+..|.+++++..++..++
T Consensus 21 llGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~----~---~~~s~lC~~Qafliq~f~~as 89 (303)
T PF05462_consen 21 LLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PS----A---GENSFLCQFQAFLIQFFMLAS 89 (303)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----cc----C---CCCCcchhhHhHHHHHhhHHH
Confidence 468889999999999999999999999999999887644332221 00 0 111268999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCCcchhhhhHHHHH
Q psy6681 81 VFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLM 160 (537)
Q Consensus 81 v~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 160 (537)
.+-.++||++=|..+++... -..|.-....+++|.++++.++.++...........|+....... .-.
T Consensus 90 ~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WCWI~~~~~~--------~r~ 157 (303)
T PF05462_consen 90 FLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWCWIKPEWDV--------WRF 157 (303)
T ss_pred HHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCceeecCCCcc--------hHH
Confidence 99999999999999887532 234555677888999999988877654332234458876543211 111
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHhCCcccc--cchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHH
Q psy6681 161 FINGVAFLILM--------GCYLKMYCAIRGSQAWNS--NDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQ 230 (537)
Q Consensus 161 ~~f~iP~liii--------~~Y~~I~~~lrk~~~~~~--~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~ 230 (537)
..|.+|+.+++ +....+++.++ .....+ ++.+....+..-.++|++||+|..|..+....+.. +..
T Consensus 158 ~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~-~~~sd~~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~~~---~~~ 233 (303)
T PF05462_consen 158 ALFYIPLWIIIIISAILVGITMRYIYRVIR-NGVSDNKDKHLKYQLKLVNYPLIFIICWIFATINRIYNFIGKN---PFW 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chH
Confidence 22333322111 11111122111 111111 22333445667888999999999999999887633 345
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccc
Q psy6681 231 AKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIE 269 (537)
Q Consensus 231 l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~ 269 (537)
+..+-..+..+...+|.++|++.++-.++.+...+.+.+
T Consensus 234 l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~ 272 (303)
T PF05462_consen 234 LSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQF 272 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 556666778889999999999999998888887665443
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.33 E-value=2.1e-10 Score=117.74 Aligned_cols=257 Identities=11% Similarity=0.124 Sum_probs=162.6
Q ss_pred CchHHHHHHHHHhc---CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHH
Q psy6681 1 MLGNGTVVFVLIFA---RSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSA 77 (537)
Q Consensus 1 LvGN~lVl~vi~~~---k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~ 77 (537)
++||++++++.+.+ ++.-.+.+..+.+||+++++.................. +..+..+++..++..+..
T Consensus 21 i~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~f~~ 93 (303)
T PF05296_consen 21 ILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNI-------YFSENVYKIIDFLWMFSN 93 (303)
T ss_pred HHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchh-------hhhhhHHHHHHHHHHHHh
Confidence 36999999888865 33347999999999999999887666555554432221 111257888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccc-ccc---cchhhhHHHHHHHHHH--HHhhhhhheee-cccCcceecccC---CC
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNK-RLS---LKHAGYIMVCGWSFAI--LMAVLPLFGIS-DYRKYATCLPFE---TT 147 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~-~~t---~k~~~iii~iiWiisl--li~i~p~~~~~-~~~~~~~C~~~~---~~ 147 (537)
..+.|..+++++--++.|+..-+.-- +.+ .+.+..++++.+++++ .+.++...... .......+.... ..
T Consensus 94 ~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N~t~~~~~ 173 (303)
T PF05296_consen 94 SSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRNSTSNFQE 173 (303)
T ss_pred HHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCcceEEeec
Confidence 99999999999988888876443211 111 1223344566677776 33333222211 111111111111 11
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------------cccchhhhhhHHHHHHHHHHhhHHHHHH
Q psy6681 148 TGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAW------------NSNDSRIAKRMALLVFTDLLCWFPIALV 215 (537)
Q Consensus 148 ~~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~------------~~~~~r~~k~L~~ivliFllcwlP~~I~ 215 (537)
......+......+..++|+++++++...+..-++||.++ .+.+.|++|+++...+.|+++++-..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~ 253 (303)
T PF05296_consen 174 SKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILS 253 (303)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222233557899999999998888777765322 2446677787777777776655444332
Q ss_pred HHHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhcc
Q psy6681 216 ALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTI 268 (537)
Q Consensus 216 ~il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~ 268 (537)
....... .......+...+..+.+..+|+|-.+-|+++|+++++++++.
T Consensus 254 ~~~~~~~----~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~ 302 (303)
T PF05296_consen 254 FLSFFFP----ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL 302 (303)
T ss_pred HHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 2222221 233456778889999999999999999999999999999864
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.24 E-value=6e-10 Score=114.36 Aligned_cols=248 Identities=11% Similarity=0.066 Sum_probs=153.6
Q ss_pred hHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHHHH
Q psy6681 3 GNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVF 82 (537)
Q Consensus 3 GN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~Sv~ 82 (537)
.++.+++++.+++.++.+.+-+++-||+.|++.+...-...-+....+..+ -+.+ .+=.+.|.+...+..++..
T Consensus 49 lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vf--C~~P----~~~~i~G~~~~~~W~~~c~ 122 (313)
T PF10321_consen 49 LYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVF--CSYP----RFIYIMGCIALGSWCGSCI 122 (313)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccc--cCCc----hHhhhhhccchhhHHHHHH
Confidence 356677777777777799999999999999998765433322222211110 1111 1223345556667777888
Q ss_pred HHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHH--HHHhhhhhheeecccCcceecccCCC---CcchhhhhHH
Q psy6681 83 TLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFA--ILMAVLPLFGISDYRKYATCLPFETT---TGVWSLTYIV 157 (537)
Q Consensus 83 ~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiis--lli~i~p~~~~~~~~~~~~C~~~~~~---~~~~~~~~~~ 157 (537)
..+.++++|..-+..|......+..++..+.+++..+++ ..+..+|.+...+ ..++.+++. ......+...
T Consensus 123 ~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~----~~sw~fDP~i~~g~~~~~Y~N~ 198 (313)
T PF10321_consen 123 ICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSE----YMSWFFDPMIFEGKSPELYSNI 198 (313)
T ss_pred HHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCC----cceEecCccccCCCCccchhhH
Confidence 888999999999999987777777777665544433333 3333355554332 233322221 1111223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------cccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHH
Q psy6681 158 FLMFINGVAFLILMGCYLKMYCAIRGSQAW------NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQA 231 (537)
Q Consensus 158 ~~~~~f~iP~liii~~Y~~I~~~lrk~~~~------~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l 231 (537)
...+-.++-.+++.++|+.+...++++.+. .+.++++.....++.+.+.+.++-|.++.++ ..+..+
T Consensus 199 ~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-------~~p~~~ 271 (313)
T PF10321_consen 199 PHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF-------PPPPWL 271 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee-------cccHHH
Confidence 444445666777888888888888766332 2333444444444444444444433332221 245677
Q ss_pred HHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhc
Q psy6681 232 KIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT 267 (537)
Q Consensus 232 ~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~ 267 (537)
..+..+...+++.++|+||..+|+..|++++++++.
T Consensus 272 i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~ 307 (313)
T PF10321_consen 272 IIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGP 307 (313)
T ss_pred HHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcc
Confidence 788899999999999999999999999999998873
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.02 E-value=2.6e-08 Score=101.77 Aligned_cols=255 Identities=13% Similarity=0.117 Sum_probs=163.6
Q ss_pred chHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccccc-ccc-ccchhhHHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARSK-IDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRM-YAIPW-QMS-AGCQMAGFMSVLSA 77 (537)
Q Consensus 2 vGN~lVl~vi~~~k~l-r~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~-~~~~W-~~g-~~C~v~~~l~~~~~ 77 (537)
+.|+++++.+.++.-. -+...+++.|-|+.|++.++.......-.......... ...+- .+| ..|.....+...+.
T Consensus 14 ~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~ 93 (292)
T PF10317_consen 14 ILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFS 93 (292)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHH
Confidence 5789999888875333 36667999999999999987655443322222211110 00011 123 67877777888888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccC----cceecc--------cC
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRK----YATCLP--------FE 145 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~----~~~C~~--------~~ 145 (537)
..+.+++.+--..||..+.++.. ++++...++++.++.++...+...+...+... ...-.+ ..
T Consensus 94 ~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~~~~~i~ 168 (292)
T PF10317_consen 94 IHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNLENYSIS 168 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCcccccccceee
Confidence 88999999999999999987543 66777777778888777776554443332110 000011 00
Q ss_pred CCCcchh--hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC-----cccccchhhhhhHHHHHHHHHHhhHHHHHHHH
Q psy6681 146 TTTGVWS--LTYIVFLMFINGV-AFLILMGCYLKMYCAIRGSQ-----AWNSNDSRIAKRMALLVFTDLLCWFPIALVAL 217 (537)
Q Consensus 146 ~~~~~~~--~~~~~~~~~~f~i-P~liii~~Y~~I~~~lrk~~-----~~~~~~~r~~k~L~~ivliFllcwlP~~I~~i 217 (537)
+..+... ..+....+....+ ..+++.++--+|.+.++++. +.++.+++.++.+.+.+++=+++..|..+..+
T Consensus 169 G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~ 248 (292)
T PF10317_consen 169 GFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYF 248 (292)
T ss_pred eecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1001101 1112222222222 34556667777888888732 33456778888899989988999998888877
Q ss_pred HHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHH
Q psy6681 218 TAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVM 263 (537)
Q Consensus 218 l~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~ 263 (537)
+..++.. .......+...+..+.+.+||+++.+.-+.||++++|
T Consensus 249 ~~~~~~~--~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 249 LSQFTGY--EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHhcc--ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 7766543 3445566777788899999999999999999999864
No 18
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.88 E-value=4.4e-10 Score=115.43 Aligned_cols=257 Identities=15% Similarity=0.236 Sum_probs=162.5
Q ss_pred chHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc-ccchhhHHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARSKID-VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYA--IPWQMS-AGCQMAGFMSVLSA 77 (537)
Q Consensus 2 vGN~lVl~vi~~~k~lr~-~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~--~~W~~g-~~C~v~~~l~~~~~ 77 (537)
+.|+++++.+.++.+... .-.+++...|+.|++.++.-....-........+.... ..+..+ ....+...+...+.
T Consensus 14 ~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~f 93 (307)
T PF10326_consen 14 FLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILLAIYCGCF 93 (307)
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehhhhhhhhH
Confidence 579999988876544433 33477788999999998876655444333333333332 233333 55666677777788
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheee--cc-------------c----Cc
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGIS--DY-------------R----KY 138 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~--~~-------------~----~~ 138 (537)
..+...++.--+.||.+|++|.+. +....++..+.++..-+.++.+...-.+... ++ + +.
T Consensus 94 ~~~~~llaihFiYRY~av~~~~~l-~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~y~~~i~~~ 172 (307)
T PF10326_consen 94 GMSFSLLAIHFIYRYWAVCRPKKL-RYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLENYGLDIDEI 172 (307)
T ss_pred HHHHHHHHhHhhhheeeeccchhh-ccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccccCCCccce
Confidence 888888889999999999999864 3334333333333333333333322211111 00 0 00
Q ss_pred c----eecccCCCCc---chhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-----cccchhhhhhHHHHHHH-
Q psy6681 139 A----TCLPFETTTG---VWSL-TYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAW-----NSNDSRIAKRMALLVFT- 204 (537)
Q Consensus 139 ~----~C~~~~~~~~---~~~~-~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~-----~~~~~r~~k~L~~ivli- 204 (537)
. ..+..+.++. .+.. ........+..+.+.++++|-.++++++++..+. ++-+++..+++.+.+++
T Consensus 173 ~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~S~~~~~lq~QLf~aLv~Qt~iP 252 (307)
T PF10326_consen 173 PYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIMSSKTRKLQKQLFKALVIQTIIP 252 (307)
T ss_pred eEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccccChhhHHHHHHHHHHHHHHhhhh
Confidence 0 0111111111 1111 2223334445789999999999999999654433 45567888888887776
Q ss_pred HHHhhHHHHHHHHHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHH
Q psy6681 205 DLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCV 262 (537)
Q Consensus 205 FllcwlP~~I~~il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~ 262 (537)
.++..+|..+..+...++.+. .....+...+..+.+++||++-.+..++||++++
T Consensus 253 ~i~~~~P~~~~~~~p~~~i~~---~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 253 FIFMYIPVFIVFILPFFGIDL---GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred heeeecchhheeeeeccCCCC---CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 889999999998888776442 2334466678889999999999999999999874
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.81 E-value=5.8e-08 Score=97.02 Aligned_cols=232 Identities=17% Similarity=0.161 Sum_probs=151.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6681 16 SKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAI 95 (537)
Q Consensus 16 ~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI 95 (537)
.+.+|.+..+.+||++|+++.++-............. . .+..|++..++.-++-..|+.+.+++++ |-||
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~~---~-----~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAI 75 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWKF---F-----DDIGCKIVFYIYRVARGLSICTTCLLSV--FQAI 75 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccc---C-----CCceeeeeeeehHHhchhhHHhhhHHHH--HhhE
Confidence 4568999999999999999998755544433332221 1 1278999999999999999999999999 5555
Q ss_pred h-ccCccc----cccccchhhhHHHHHHHHHHHHhhhhhheee---cc------cCcceecccCCCCcchhhhhHHHHHH
Q psy6681 96 T-HAMHLN----KRLSLKHAGYIMVCGWSFAILMAVLPLFGIS---DY------RKYATCLPFETTTGVWSLTYIVFLMF 161 (537)
Q Consensus 96 ~-~Pl~y~----~~~t~k~~~iii~iiWiislli~i~p~~~~~---~~------~~~~~C~~~~~~~~~~~~~~~~~~~~ 161 (537)
. .|-... +....|.....+.+.|++-+++.....+... .. .....|.....+... ...+..+..+
T Consensus 76 tISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~-~~~~~~~~~~ 154 (265)
T PF03402_consen 76 TISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIV-SSLFATLLSF 154 (265)
T ss_pred EEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhh-hhhhhhHHHh
Confidence 4 333211 1123445566677789998887743222211 11 122457543322211 2222322223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcc------------cccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchH
Q psy6681 162 INGVAFLILMGCYLKMYCAIRGSQAW------------NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLE 229 (537)
Q Consensus 162 ~f~iP~liii~~Y~~I~~~lrk~~~~------------~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~ 229 (537)
--++.+.+|+..-+.|+..+.|++++ ...|.|+++++++++..|++.+..-.++.++.....+ .+
T Consensus 155 ~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~--~~- 231 (265)
T PF03402_consen 155 RDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN--SP- 231 (265)
T ss_pred hHHHHHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC--Cc-
Confidence 23556667777777777777665432 3568999999999999999999888776554333222 12
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhcchHHHHHH
Q psy6681 230 QAKIFTVFVLPLNSCCNPFLYAILTKQFKKDC 261 (537)
Q Consensus 230 ~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l 261 (537)
.+..+..++...-+++-|||....++++.+-+
T Consensus 232 ~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 232 WLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred ceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 33356778888999999999999999887654
No 20
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.71 E-value=4.9e-07 Score=91.11 Aligned_cols=253 Identities=11% Similarity=0.066 Sum_probs=132.6
Q ss_pred chHHHHHHHHHhcCC--C-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccccccccccccchhhHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARS--K-IDVPRFLVCNLAAADFFMGLYLGLLAVVDAS--TLGEFRMYAIPWQMSAGCQMAGFMSVLS 76 (537)
Q Consensus 2 vGN~lVl~vi~~~k~--l-r~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~--~~~~~~~~~~~W~~g~~C~v~~~l~~~~ 76 (537)
+.+.++++++.++++ . .++.+.+...=++.|++.-+...+..=.... ...... ....+..+....+..++...+
T Consensus 13 ~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~ 91 (275)
T PF02118_consen 13 ILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFF-LPFFENPPFFLNIFYFLQYYF 91 (275)
T ss_pred HHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhH-HHHHcCCcHHHHHHHHHHHHH
Confidence 346777888887776 3 5666666666666666664432222100000 000000 000011125677778888889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeec---ccCcceecccCCCCcchhh
Q psy6681 77 AELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISD---YRKYATCLPFETTTGVWSL 153 (537)
Q Consensus 77 ~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~---~~~~~~C~~~~~~~~~~~~ 153 (537)
..+...+.+.|+++|+.+|..|.++.+..++.. ..+++++.++++... .+.+.... +.+...-........ ..
T Consensus 92 ~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 167 (275)
T PF02118_consen 92 AYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFT-WNIFISPTYVVYDNGGFSYSYNDTVS--WA 167 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHH-HHHHccccEEEEECCceEEEEEeccc--hh
Confidence 999999999999999999999999988877544 334444444444433 22222211 111111111111111 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHHH
Q psy6681 154 TYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ-AWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAK 232 (537)
Q Consensus 154 ~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~-~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l~ 232 (537)
....+....+++-.++.++++..+.+++++.+ +.++.+++..+..++..+++++.-+...+..+ ..........+...
T Consensus 168 ~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 246 (275)
T PF02118_consen 168 SLSIFSLIYFIIIIIITIITNIITYRRLRKLSKRIKSVERNLTIISFIISFVQLLIAIWQIINSF-AFFFDFLPISSFLY 246 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccHHHHHH
Confidence 22233333345556667777777888887654 22333444444444444444443333332111 11111111123333
Q ss_pred HHHHHHhhhhhhHHHHHHHhcchHHHHH
Q psy6681 233 IFTVFVLPLNSCCNPFLYAILTKQFKKD 260 (537)
Q Consensus 233 ~i~~~l~~lns~iNPiIY~~~nk~FR~~ 260 (537)
.+..+..=+-+...|++-.++++++|+.
T Consensus 247 ~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 247 YLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 3333334455778899999999999985
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.66 E-value=1.4e-05 Score=82.87 Aligned_cols=260 Identities=10% Similarity=0.013 Sum_probs=143.4
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHHHHH
Q psy6681 4 NGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAELSVF 82 (537)
Q Consensus 4 N~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~Sv~ 82 (537)
++.+++.+..++..|.-..+++....++.++.++........+....... ..+=+.... ..|-+.-.+..++..+..+
T Consensus 34 ~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~-~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~ 112 (324)
T PF10292_consen 34 IIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFP-DDPCDMIPSTYRCFILRIPYNFGLFLVSF 112 (324)
T ss_pred HHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCcccccchhHHHHHHHHHHHHHHHHHH
Confidence 34445555555667788889999999999988876555444333321110 011111223 6798999999999999999
Q ss_pred HHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeec-ccCcceecccCCCCcchhhhhHHHHHH
Q psy6681 83 TLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISD-YRKYATCLPFETTTGVWSLTYIVFLMF 161 (537)
Q Consensus 83 ~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~~~ 161 (537)
+..++.+||++|.++.-+|.+. ++.-..++.++.|+++++........... .+....|................+.++
T Consensus 113 t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~~~~~~~~~~~yC~~~~~~~~~~~~~~~~~~~~ 191 (324)
T PF10292_consen 113 TTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVYSDEDFPNERMYYCQASSSSSPYRVNIPFIVILV 191 (324)
T ss_pred HHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHhhhhccCccceeeEEecCCCchhhHHHHHHHHH
Confidence 9999999999999998888655 33333344455555555543222221111 223456866544422211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcc--------cccchhhhhhHHHHHHHHHHhhHHHHHHHHHHH-HcccccchHHHH
Q psy6681 162 INGVAFLILMGCYLKMYCAIRGSQAW--------NSNDSRIAKRMALLVFTDLLCWFPIALVALTAI-CGVHLVSLEQAK 232 (537)
Q Consensus 162 ~f~iP~liii~~Y~~I~~~lrk~~~~--------~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~-~~~~~~~~~~l~ 232 (537)
..++.+++.. ...+.-+++|++... ..++.+..+++..++.+..+.-+-+.+..+... +......+....
T Consensus 192 ~~i~~~i~f~-~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~a 270 (324)
T PF10292_consen 192 LQILALILFR-YLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFA 270 (324)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHH
Confidence 1122222111 111222223321111 145667788877777766655555555444333 332322222221
Q ss_pred H-HHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHh
Q psy6681 233 I-FTVFVLPLNSCCNPFLYAILTKQFKKDCVMICK 266 (537)
Q Consensus 233 ~-i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~ 266 (537)
. -......+.+.+-|+++....++.|+..++-+.
T Consensus 271 l~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l~ 305 (324)
T PF10292_consen 271 LAELNHIFPLYSIISPLILYRKIKKIRKKRKKRLE 305 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122355678899999999999999988876655
No 22
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.65 E-value=1.6e-06 Score=83.74 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=100.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6681 15 RSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYA 94 (537)
Q Consensus 15 k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYia 94 (537)
++++.-.+.+++||.++|++.++..+............ ...+..|.++|++..++..++-+.+.+||++-|+.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i-------~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~ 102 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGI-------IAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLI 102 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe-------eCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999998776644443332111 11237999999999999999999999999999999
Q ss_pred hhccCc----ccc-----ccccchhhhHHHHHHHHHHHHhhhhhheeecc-cCcceecccCCCCcchhhhhHHHHHHHHH
Q psy6681 95 ITHAMH----LNK-----RLSLKHAGYIMVCGWSFAILMAVLPLFGISDY-RKYATCLPFETTTGVWSLTYIVFLMFING 164 (537)
Q Consensus 95 I~~Pl~----y~~-----~~t~k~~~iii~iiWiislli~i~p~~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~~~f~ 164 (537)
|.+|-. .+. ...+..+..+..++|++...++.... +...| +....|+....... .-....-+-.+
T Consensus 103 v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~-~~~~Y~~~g~WCWi~~~~~~----~Rl~l~y~~~~ 177 (201)
T PF11710_consen 103 VFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGL-GGPGYGPAGAWCWIPSRYEW----YRLWLHYIWRF 177 (201)
T ss_pred HhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhcc-ccCcccccCcEEEECCCcHH----HHHHHHHHHHH
Confidence 999921 110 11122223333345555444433221 11222 34668976544321 11222222234
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc
Q psy6681 165 VAFLILMGCYLKMYCAIRGSQA 186 (537)
Q Consensus 165 iP~liii~~Y~~I~~~lrk~~~ 186 (537)
+-.+++++.|..|+..+|++-+
T Consensus 178 ~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 178 IIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 6677888899999999988754
No 23
>KOG4193|consensus
Probab=98.60 E-value=3.2e-06 Score=93.80 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=132.4
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc--c-cchhhHHHHHHHHHHHHHHHH
Q psy6681 9 FVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS--A-GCQMAGFMSVLSAELSVFTLA 85 (537)
Q Consensus 9 ~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g--~-~C~v~~~l~~~~~~~Sv~~l~ 85 (537)
++++.-+++++-.+....||+++=++.-++++ . + .|..+ . .|.+..++.+++..+.++-+.
T Consensus 342 ~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~fL----~-----~-------~~~~~~~~~~C~~~a~llhff~LaaF~Wm~ 405 (610)
T KOG4193|consen 342 ATYLLFRKLQNDRTKIHINLCLCLFLAELLFL----L-----G-------IDRTSTSVVLCIAAAILLHFFFLAAFFWML 405 (610)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh----c-----c-------cccccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 33333455655557777888888222211111 0 1 12221 3 799999999999999999999
Q ss_pred HHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheee-c---ccCcceecccCCCCcchhhhhHHHHHH
Q psy6681 86 VITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGIS-D---YRKYATCLPFETTTGVWSLTYIVFLMF 161 (537)
Q Consensus 86 ~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~-~---~~~~~~C~~~~~~~~~~~~~~~~~~~~ 161 (537)
+++++=|+.++.-+ .....++.+.+.++.|..++++....+.... . |.....|+........+.
T Consensus 406 leg~hl~~~~v~vf---~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~--------- 473 (610)
T KOG4193|consen 406 LEGFHLYLLLVEVF---RSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS--------- 473 (610)
T ss_pred HHHHHHHHHHHHHh---ccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE---------
Confidence 99999999665433 2334455555557899999888765554332 2 444556877665543322
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHhCCcccccch--hhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHH
Q psy6681 162 INGVAFLILMGCYLKM--------YCAIRGSQAWNSNDS--RIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQA 231 (537)
Q Consensus 162 ~f~iP~liii~~Y~~I--------~~~lrk~~~~~~~~~--r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l 231 (537)
|+.|+.+++.+++.+ .+...+.+...++.. +..+..+.+.+++=++|.-.....+- . ....+
T Consensus 474 -F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~----~---~~~v~ 545 (610)
T KOG4193|consen 474 -FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGIFSWLP----G---TSVVF 545 (610)
T ss_pred -EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c---cchHH
Confidence 333444444333222 222222221112222 34555566666666666543222221 1 23344
Q ss_pred HHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccc
Q psy6681 232 KIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIE 269 (537)
Q Consensus 232 ~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~ 269 (537)
.++..++-.+..++=.++|+++++++|+..++.++|++
T Consensus 546 ~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~ 583 (610)
T KOG4193|consen 546 AYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGR 583 (610)
T ss_pred HHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccC
Confidence 55666666777788899999999999999999888543
No 24
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.60 E-value=3.5e-06 Score=86.57 Aligned_cols=183 Identities=15% Similarity=0.211 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----c-cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6681 22 RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRM----Y-AIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAIT 96 (537)
Q Consensus 22 n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~----~-~~~W~~g~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~ 96 (537)
.-.+..||+||++.++-++.-..+.......... . ...|+. .+|.....-..+++.++.|-+.+.|+|=|+.+.
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~-afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~ 146 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPA-AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIR 146 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 4678899999999998777766654432211110 1 112221 689888777778999999999999999999875
Q ss_pred ccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCCcchhhhhHHHHHHHHHHHHHHHHHH---
Q psy6681 97 HAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGC--- 173 (537)
Q Consensus 97 ~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~f~iP~liii~~--- 173 (537)
+-- ......+.-+++|+.+.++...-+.... ++....|...... . +..-+..++|++++++.
T Consensus 147 ~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly-~Ps~~~Ce~~l~~----a----lphYvttY~PlllVlvaNPi 211 (405)
T PF02101_consen 147 RSA------GRSTIWLYHMMAWGLPALLCAEGLAMLY-YPSISRCESGLEH----A----LPHYVTTYIPLLLVLVANPI 211 (405)
T ss_pred ccC------CCcchhHHHHHHHHHHHHHHHhccceee-cCCHHhhhhhhhh----c----chhHHHHHHHHHHHHHhccH
Confidence 421 1223345667789999988865443332 2333445321110 1 11112223444444433
Q ss_pred -HHHHHHHH----HhCC-cccccchhh----hhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy6681 174 -YLKMYCAI----RGSQ-AWNSNDSRI----AKRMALLVFTDLLCWFPIALVALTAI 220 (537)
Q Consensus 174 -Y~~I~~~l----rk~~-~~~~~~~r~----~k~L~~ivliFllcwlP~~I~~il~~ 220 (537)
|.+..+.+ +.++ .-..+||+. -+.++.+.++|++||+|..|--++..
T Consensus 212 Ly~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~ 268 (405)
T PF02101_consen 212 LYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLF 268 (405)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 33333332 2221 112334433 34567788999999999988776544
No 25
>KOG4564|consensus
Probab=98.36 E-value=1.6e-05 Score=85.00 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=152.3
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-----ccccccchhhHHHHHHHHHHHH
Q psy6681 7 VVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIP-----WQMSAGCQMAGFMSVLSAELSV 81 (537)
Q Consensus 7 Vl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~-----W~~g~~C~v~~~l~~~~~~~Sv 81 (537)
.++++..-|++|-..|++=.||.++=++-++..+................+.. +.....|+...++...+..+..
T Consensus 165 Al~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf 244 (473)
T KOG4564|consen 165 ALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANF 244 (473)
T ss_pred HHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 34555556899999999999999999888877666655444332211111111 1222789999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCCcchhhhhHHHHHH
Q psy6681 82 FTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMF 161 (537)
Q Consensus 82 ~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 161 (537)
+-|.+=+++-|..|.--+.. -++.....+++.|.+++++..+..+.... .++..|+........+...- .
T Consensus 245 ~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~-~~d~~CW~~~~~~~~~WIi~-----g 314 (473)
T KOG4564|consen 245 FWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRLY-LEDTGCWDSNDTGHIWWIIR-----G 314 (473)
T ss_pred HHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHhee-eccccccccCCCcceEEEEe-----c
Confidence 99998888777777653321 25677778889999999988777665533 23346865444311111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhCCc-ccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccc-cchHHHHHHH
Q psy6681 162 INGVAFLILMGCYLKMYCAI----RGSQA-WNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHL-VSLEQAKIFT 235 (537)
Q Consensus 162 ~f~iP~liii~~Y~~I~~~l----rk~~~-~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~-~~~~~l~~i~ 235 (537)
-.++.+++-.++.+.|++.+ |..+. .....+|++|..++++=+|=+-++.+ .+.... .......++.
T Consensus 315 Pi~~ai~vNf~flinIvrILv~KLr~~~~~~~~~y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~~~~~~v~~~~~ 387 (473)
T KOG4564|consen 315 PILLAILVNFIFLINIVRILVTKLRASNASETDQYRKLVKATLVLIPLFGIHYILF-------AFRPDEDTLREVYLYFE 387 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHcCCeeEEE-------EecCchHHHHHHHHHHH
Confidence 11223333333444444444 33222 22346788887776665554432221 111111 1223344556
Q ss_pred HHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccccc
Q psy6681 236 VFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEES 271 (537)
Q Consensus 236 ~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~~ 271 (537)
.++..+..++=-+||++.|+|.+.++|+.+.+.+..
T Consensus 388 ~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~ 423 (473)
T KOG4564|consen 388 LFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLS 423 (473)
T ss_pred HHHHhccchheehheeecCHHHHHHHHHHHHhcChh
Confidence 677778888889999999999999999998754443
No 26
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.32 E-value=3.3e-05 Score=79.16 Aligned_cols=257 Identities=11% Similarity=0.150 Sum_probs=141.8
Q ss_pred hHHHHHHHHHhcC-CCCchhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHH
Q psy6681 3 GNGTVVFVLIFAR-SKIDVPRFLVCNL----AAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSA 77 (537)
Q Consensus 3 GN~lVl~vi~~~k-~lr~~~n~lLlnL----AIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~ 77 (537)
-|++.++.+.++. +..+....+++++ .+.|+..+++..|........+...... -.+|.-..++.++...+.
T Consensus 20 i~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l---~~~gv~~~~q~~i~~~~~ 96 (302)
T PF10318_consen 20 IYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGIL---SYFGVPTPIQFYIGVTLL 96 (302)
T ss_pred HHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcch---hhcccChHHHHHHHHHHh
Confidence 3566666666542 2223444444444 4566666655444333322211111001 111345677778888888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeeccc-------CcceecccC--CCC
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYR-------KYATCLPFE--TTT 148 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~-------~~~~C~~~~--~~~ 148 (537)
.....+++.+--.||.++....+ +...++.-....++.++++++..+|..+...+.+ +...|.+.+ .+.
T Consensus 97 ~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~pc~~~~~~~~~ 174 (302)
T PF10318_consen 97 AFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKYPCPPPEFFDNP 174 (302)
T ss_pred hhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccCCchhhcCCC
Confidence 88888888899999999996543 1222222333344455566655555554333211 112233211 100
Q ss_pred c-----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------ccccchhhhhhHHHHHHH-HHHhhHHHHHHH
Q psy6681 149 G-----VWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQA------WNSNDSRIAKRMALLVFT-DLLCWFPIALVA 216 (537)
Q Consensus 149 ~-----~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~------~~~~~~r~~k~L~~ivli-FllcwlP~~I~~ 216 (537)
. ...........+..++....+++....+.+.++++.+ ..+.++|..+.+.+.+++ +++.-.|..+..
T Consensus 175 ~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~ 254 (302)
T PF10318_consen 175 PVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKKTMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFI 254 (302)
T ss_pred CeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0 0011112222222233333444444444444544422 234567788888887766 566677887777
Q ss_pred HHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhc
Q psy6681 217 LTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT 267 (537)
Q Consensus 217 il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~ 267 (537)
+....+.. .+.+..+..++...++.+.-++..+.++.||+.++++++|
T Consensus 255 ~~~~~~~~---~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 255 ISIIFGYY---NQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHhcccc---ccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 66555432 2345567778888999999999999999999999999986
No 27
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.27 E-value=7.6e-05 Score=75.36 Aligned_cols=212 Identities=15% Similarity=0.157 Sum_probs=118.9
Q ss_pred chHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSV 81 (537)
Q Consensus 2 vGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~Sv 81 (537)
+.|..+++.+...|+.+++--.++--..+.|.+.++...+...+...........+.+ ..=-+.++..........
T Consensus 21 ~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~if~~~~p~~~~~~iR~ 96 (273)
T PF10316_consen 21 LINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYK----NLIFYIGWPSSNLGSIRS 96 (273)
T ss_pred HHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccc----cEEeehhhhHHHHHHHHH
Confidence 4688899888877773344445555678999999987765555444321111000111 122234555555666778
Q ss_pred HHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeec--ccCcceecccCCCCcc-hhhhhHHH
Q psy6681 82 FTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISD--YRKYATCLPFETTTGV-WSLTYIVF 158 (537)
Q Consensus 82 ~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~--~~~~~~C~~~~~~~~~-~~~~~~~~ 158 (537)
.....||+||.+|++.|..|++...+-....+++++-.++++=... +++.=+ .+....|......... +..++...
T Consensus 97 ~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~d~~v-lf~~C~~~i~~p~~C~~~~C~vn~Cf~~Yw~~~ 175 (273)
T PF10316_consen 97 ILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLFDQYV-LFGFCDFVIDVPPNCVNFGCAVNQCFRQYWLTS 175 (273)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHHHHhH-hhhcCCCCCCCCCCCCccCCCCchHHHHHHHhh
Confidence 8889999999999999999988766655555555444444433322 222212 2334556554433333 23444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCcccccchhhhhhHHHHH-HHHHHhhHHHHHHHHH
Q psy6681 159 LMFINGVAFLILMGCYLKMYCAIR-GSQAWNSNDSRIAKRMALLV-FTDLLCWFPIALVALT 218 (537)
Q Consensus 159 ~~~~f~iP~liii~~Y~~I~~~lr-k~~~~~~~~~r~~k~L~~iv-liFllcwlP~~I~~il 218 (537)
-.+.+.+-.+..+....+++..=+ +++...+.-+|+.+..++-. .+++.-.+|..+...+
T Consensus 176 ~~i~~~li~~~S~~L~~KLfi~n~~~~~~~~~~l~rANrlALiD~~ii~~Fd~iP~~~~~~~ 237 (273)
T PF10316_consen 176 EMIIFSLIIILSILLCIKLFIWNKCKKKNKSKDLSRANRLALIDSFIILLFDFIPSFLVSYF 237 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccccchHHHHhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 555555544444444455552111 12333333445555444433 3466678898887776
No 28
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.23 E-value=1.7e-05 Score=81.62 Aligned_cols=254 Identities=13% Similarity=0.217 Sum_probs=147.0
Q ss_pred chHHHHHHHHHhcCCCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARSKIDVPRFLV----CNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSA 77 (537)
Q Consensus 2 vGN~lVl~vi~~~k~lr~~~n~lL----lnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~ 77 (537)
+.|.+.++.+..+.+.-....+++ +...++|+-.++++.|..+.....+....... .| +|..+.....+..+..
T Consensus 24 ~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~-~~-f~i~~h~~~~i~~~l~ 101 (303)
T PF10327_consen 24 ILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLA-RY-FGISSHYLMTIWIFLF 101 (303)
T ss_pred HHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehh-hc-CCCchHHHHHHHHHHH
Confidence 468888887776543333333333 34578899888887777776554432211100 01 1222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhh-eeecc-------cCcceecccC----
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLF-GISDY-------RKYATCLPFE---- 145 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~-~~~~~-------~~~~~C~~~~---- 145 (537)
...+-.++.--+-|+-+|.+..+.+. ..+.......++..++.++..+.... +..+. +.++.|...-
T Consensus 102 ~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP~~~~~F~~l~ 180 (303)
T PF10327_consen 102 IFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYPEYLSWFSSLP 180 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCchhHHHhcCC
Confidence 44555555556778999998775333 33333333333344444443322111 11111 1233343211
Q ss_pred ----CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccccchhhhhhHHHHHHHHHHhhHHHHHHH
Q psy6681 146 ----TTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQA-----WNSNDSRIAKRMALLVFTDLLCWFPIALVA 216 (537)
Q Consensus 146 ----~~~~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~-----~~~~~~r~~k~L~~ivliFllcwlP~~I~~ 216 (537)
.+...+.....+..++..++-.+++.+++..|++.+++.++ .-++++++.+.+++-.++-.+|-+|..+..
T Consensus 181 nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~ 260 (303)
T PF10327_consen 181 NFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQTYQKHKEAVRSLIAQFATSSICILPPFIFV 260 (303)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00111112222233333456677788888888888765432 246778899999998888888889998877
Q ss_pred HHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHH
Q psy6681 217 LTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKD 260 (537)
Q Consensus 217 il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~ 260 (537)
++...... ..+.+..++..+..++|.+|-++..+.++.||+-
T Consensus 261 ~~~~~~~~--~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 261 VVVIFEFE--DAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred hhheecCC--CcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 66655432 4556677788888999999999999999999974
No 29
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.12 E-value=0.00011 Score=74.74 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=146.6
Q ss_pred chHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccccccccc--ccchhhHHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARSKID-VPRFLVCNLAAADFFMGLYLGLLAVVDASTLGE-FRMYAIPWQMS--AGCQMAGFMSVLSA 77 (537)
Q Consensus 2 vGN~lVl~vi~~~k~lr~-~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~-~~~~~~~W~~g--~~C~v~~~l~~~~~ 77 (537)
+-|-+.++.+..+|+.+- .-.++|+.-|+-|++.++.-+...+........ .....+.|..+ ..-......-..+.
T Consensus 20 ~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~ls~RCsfI 99 (310)
T PF10319_consen 20 IVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLLSIRCSFI 99 (310)
T ss_pred HHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHHHHHHHHH
Confidence 457788888887777653 445888999999999998654333321111111 11112223222 22222333334455
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhh-hheeec-----c---------c----Cc
Q psy6681 78 ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLP-LFGISD-----Y---------R----KY 138 (537)
Q Consensus 78 ~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p-~~~~~~-----~---------~----~~ 138 (537)
.+|--.|..--+.||+++++|....+.+.+......+...-.....+...- ...+.+ | + +.
T Consensus 100 s~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e~YG~Ds~di 179 (310)
T PF10319_consen 100 SGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFREVYGVDSMDI 179 (310)
T ss_pred hhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCCCCcC
Confidence 556667778889999999998765555544433333322222222222211 111111 1 1 01
Q ss_pred c--eecccCCCCcchhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCC-----cccccchhhhhhHHHHHHH-HHHh
Q psy6681 139 A--TCLPFETTTGVWSLTYIVFLMFI--NGVAFLILMGCYLKMYCAIRGSQ-----AWNSNDSRIAKRMALLVFT-DLLC 208 (537)
Q Consensus 139 ~--~C~~~~~~~~~~~~~~~~~~~~~--f~iP~liii~~Y~~I~~~lrk~~-----~~~~~~~r~~k~L~~ivli-Fllc 208 (537)
+ .+...+.........+..+.++. -...+.+..++-.+|.+++++.. +..+-+++..|.|++.+++ -+++
T Consensus 180 Nml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~qL~~AL~vQT~IPi~vs 259 (310)
T PF10319_consen 180 NMLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQLFKALIVQTVIPICVS 259 (310)
T ss_pred ceEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHHHHHHHHHHHHHHHhHHHHh
Confidence 1 12222222222222222222222 23445555555666777775432 2335567888999988877 7899
Q ss_pred hHHHHHHHHHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHH
Q psy6681 209 WFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKD 260 (537)
Q Consensus 209 wlP~~I~~il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~ 260 (537)
..|-.+......++.+ ...+..++.......-+++||+.-.+.-+.||+.
T Consensus 260 f~Pc~~~wy~pif~i~--~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 260 FSPCVLSWYGPIFGID--LGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred hccHHHHHhHHHHcCC--hhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 9999988887777654 3456667777778888999999999999999975
No 30
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.94 E-value=1.9e-06 Score=85.21 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Q psy6681 5 GTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTL 84 (537)
Q Consensus 5 ~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~Sv~~l 84 (537)
++.++++...|++|+..+....||++++++..+..+............ ..+..|...+++.+++..++.+-+
T Consensus 19 l~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~--------~~~~~C~~~a~~~hy~~la~f~Wm 90 (242)
T PF00002_consen 19 LLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPIST--------TNHCLCRAIAILLHYFFLASFFWM 90 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccc--------cccccchhhhhHhHHHHHHHHHHH
Confidence 344455555578888888899999999998876544332111110000 001249999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccC
Q psy6681 85 AVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFE 145 (537)
Q Consensus 85 ~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~ 145 (537)
.+++++-|..+..+.. ..+++.....++.|.+++++............+...|+...
T Consensus 91 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CWl~~ 147 (242)
T PF00002_consen 91 LVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCWLSN 147 (242)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeecccccccccccccC
Confidence 9999999999987632 12455667778889999998876665553333446785443
No 31
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.80 E-value=0.0049 Score=64.16 Aligned_cols=232 Identities=10% Similarity=0.097 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccccccccc--cccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6681 20 VPRFLVCNLAAADFFMGLYLGL--LAVVDASTLGEFRMYAIP--WQMS-AGCQMAGFMSVLSAELSVFTLAVITLERNYA 94 (537)
Q Consensus 20 ~~n~lLlnLAIaDLl~~l~~lp--~~i~~~~~~~~~~~~~~~--W~~g-~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYia 94 (537)
...+++.+|..+++=-...... ..++..+. ..+++ ..+. ..|.....+..++.....+.-+++++||.+|
T Consensus 55 Tr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~-----~~~dpC~i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~a 129 (328)
T PF02117_consen 55 TRILLISNLLFANIHQISYAIIQIWSLYRSFF-----YSDDPCSILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLA 129 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCeeeEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777776655443221 22222211 12222 3333 7899999999999999999999999999999
Q ss_pred hhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc--cCcceecccCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q psy6681 95 ITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY--RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMG 172 (537)
Q Consensus 95 I~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~~~~f~iP~liii~ 172 (537)
...|..|.+. +......+.+++-+.++.. ..+..+++. +-...|...+.........+.....++.++.+++.++
T Consensus 130 t~~~~~~~~~-~~~~g~~l~i~~li~s~~~--~~~i~~~~p~~gyv~~C~~~p~~s~~~~~~~~~~~~~l~i~~~i~s~~ 206 (328)
T PF02117_consen 130 TFFPKYYSKK-SYIIGIILSILVLILSFIT--GFIIYWDDPLDGYVPSCFYPPKNSVNRFNIFLIVCFVLTIFNLIVSIF 206 (328)
T ss_pred Hhchhhhhhh-hHHHHHHHHHHHHHHHHHH--eeEEEeCCCCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988654322 2112122222222222221 223333322 2335786654433222222222222222222222221
Q ss_pred HHHHHHHHHHhCCc-------ccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHHHHHHHHHh--hhhh
Q psy6681 173 CYLKMYCAIRGSQA-------WNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVL--PLNS 243 (537)
Q Consensus 173 ~Y~~I~~~lrk~~~-------~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l~~i~~~l~--~lns 243 (537)
.+..-. +..++.+ +.++....++.+..+.++-++|.+-|.+...+.........+.....+..|+. ...+
T Consensus 207 l~~~nk-k~e~~~~f~v~~Ry~~~Eni~ST~aI~~i~~~Q~i~~~iys~~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~ 285 (328)
T PF02117_consen 207 LMYYNK-KKEKKTRFDVNSRYQKRENINSTKAICIISISQFICMFIYSFGVFILRNFRSSISPETFHNIVLWFYTFPYAA 285 (328)
T ss_pred HHHHHH-HHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHhcccHHH
Confidence 111111 1111110 12344566777888888877777777665544333333333444444333332 1333
Q ss_pred hHHHHHHHhcchHHHHH
Q psy6681 244 CCNPFLYAILTKQFKKD 260 (537)
Q Consensus 244 ~iNPiIY~~~nk~FR~~ 260 (537)
++=|++-.+.-+..|+.
T Consensus 286 l~lP~li~~~~~~~~~~ 302 (328)
T PF02117_consen 286 LSLPLLIIYRIRRIRRQ 302 (328)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44466555555554443
No 32
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.66 E-value=0.026 Score=59.64 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHH---HHHHHHHHHHhhhhhheeecccCcceeccc
Q psy6681 68 MAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIM---VCGWSFAILMAVLPLFGISDYRKYATCLPF 144 (537)
Q Consensus 68 v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii---~iiWiislli~i~p~~~~~~~~~~~~C~~~ 144 (537)
+.+++.+.........+.++++||.+|-.+--.|.+. +|.++.+ ++.-++++..+..... ...
T Consensus 125 ~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~---~R~~I~~~l~~~~~~~~~~~s~~~~~--~~~--------- 190 (365)
T PF03125_consen 125 IGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK---SRRWISILLIIFSQIFSIIFSYFVIF--NII--------- 190 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCchHHHHHHHHHHHHHHHHHHHHHH--Hhc---------
Confidence 3456666666666789999999999999988777654 2322222 2222233322211111 100
Q ss_pred CCCCcchhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCcc-c----------ccchhhhhhHH---HHHHHHHH
Q psy6681 145 ETTTGVWSLTYIVFLMFI---NGVAFLILMGCYLKMYCAIRGSQAW-N----------SNDSRIAKRMA---LLVFTDLL 207 (537)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~---f~iP~liii~~Y~~I~~~lrk~~~~-~----------~~~~r~~k~L~---~ivliFll 207 (537)
. .....+..++. .++-++.+-..+.+..+++++..+. . +++.|..+++- +.++.+++
T Consensus 191 ---~---~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~l~~~~~~~~~YSLs~RFQi~ENir~l~l~~~~vi~~~~~i~ 264 (365)
T PF03125_consen 191 ---P---FIFHVIIFIVSNIISFVLFFILYRYNRKRLKKLENPRRKISKYSLSQRFQIKENIRSLKLLKRVVIVIAFFII 264 (365)
T ss_pred ---c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCceechhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111111111 1222233333344455555543321 1 22344444443 33333333
Q ss_pred hhHHHHHHHHHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhcccc
Q psy6681 208 CWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEE 270 (537)
Q Consensus 208 cwlP~~I~~il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~ 270 (537)
..+...+ +..+............+......+++.+=|.+-....+.+|+.+++.+....+
T Consensus 265 ~~~~~~~---~~~~~~~~~~~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~ 324 (365)
T PF03125_consen 265 LCLIILI---LLSFDLSPSYRTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC 324 (365)
T ss_pred HHHHHHH---HHHHccChhHHHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence 2222222 22222221123345556677888999998988889999999999998876544
No 33
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.63 E-value=0.0045 Score=61.46 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=139.7
Q ss_pred hHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccccccccccccccchhhHHHHHHHHH
Q psy6681 3 GNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLG----LLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAE 78 (537)
Q Consensus 3 GN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~l----p~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~ 78 (537)
|-.+|+.++..+.-++-+...|+..|.++-.++....+ |..+........ .-+..-.+..++.-++.+
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~--------~~s~~f~~~Sy~idf~h~ 102 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEF--------VQSELFIFMSYLIDFCHY 102 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHH--------hccchhhHHHHHHHHHHH
Confidence 44456666666555566778999999999888876543 333322221110 001233445666677888
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc--c-----CcceecccCC--CCc
Q psy6681 79 LSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY--R-----KYATCLPFET--TTG 149 (537)
Q Consensus 79 ~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~--~-----~~~~C~~~~~--~~~ 149 (537)
.-.+.-.+||+.|+....+-.+-.+.+.....++-+..+|++++..-.......=.| + ..-.|..... +..
T Consensus 103 siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~ 182 (305)
T PF04789_consen 103 SILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDIS 182 (305)
T ss_pred HHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeC
Confidence 888888999999988766433333444566667777889999987764333221111 1 1113543310 000
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccc
Q psy6681 150 VWSLTYIVFLMFINGVAFLILMGCYLKMYCAIR--GSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVS 227 (537)
Q Consensus 150 ~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lr--k~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~ 227 (537)
.-...-.+-..+-+++|+++.+ .|+.|..++- |+...++.|.++.|.-+.+.++|-+ +..+..+-.........
T Consensus 183 ~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~MKkssLnK~Ei~ILKQAifIFvlFQ~---ss~VFl~~qt~~~~~~t 258 (305)
T PF04789_consen 183 PPRGIQIIEIILQFGIPIFILV-IYIAIIIKIIKMKKSSLNKNEITILKQAIFIFVLFQA---SSCVFLLCQTFKFNVAT 258 (305)
T ss_pred CCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH---HHHHHHhheeeeecchH
Confidence 0011122333444677776554 4555544443 3444556677777766655555443 33222222222222222
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHH
Q psy6681 228 LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCV 262 (537)
Q Consensus 228 ~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~ 262 (537)
--.+..+.+.+-.+..+.-|..+.+.++|.|+-+-
T Consensus 259 AFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s 293 (305)
T PF04789_consen 259 AFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVS 293 (305)
T ss_pred HHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHH
Confidence 33444566777778888999999999999998764
No 34
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.93 E-value=0.079 Score=55.04 Aligned_cols=210 Identities=13% Similarity=0.164 Sum_probs=115.3
Q ss_pred hHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhccc---ccccccccccc-ccchhhHHHHHHH
Q psy6681 3 GNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVD--ASTLGE---FRMYAIPWQMS-AGCQMAGFMSVLS 76 (537)
Q Consensus 3 GN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~--~~~~~~---~~~~~~~W~~g-~~C~v~~~l~~~~ 76 (537)
.+++.++++..++++-+-+..-++-|+++-++.++..+.-.+.. ...-.. ......+.-.+ ..|.+...+.+++
T Consensus 25 ~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~~~~C~~~F~l~Yyf 104 (328)
T PF01534_consen 25 STLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLENSSCTVVFLLLYYF 104 (328)
T ss_pred HHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCCCCchhhHHHHHHHH
Confidence 45666777777666555566777788888887776555444331 000000 00000011112 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheee--cccCcceecccCCCCcchhhh
Q psy6681 77 AELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGIS--DYRKYATCLPFETTTGVWSLT 154 (537)
Q Consensus 77 ~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~--~~~~~~~C~~~~~~~~~~~~~ 154 (537)
..++..--+.+++.-|++...-... .. -.++..+.-+++|.++.+..+..+.... ..+-.+.|..-..+... ...
T Consensus 105 ~mAa~~WWviLt~~W~lsa~~kw~~-e~-i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~-l~~ 181 (328)
T PF01534_consen 105 GMAASLWWVILTLTWFLSAGLKWGS-EA-IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNPSA-LRG 181 (328)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccCc-ch-hhhhcchhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCHHH-HhH
Confidence 8888888888899999988764432 22 2456677788899999998865544322 22334578664443322 233
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-CcccccchhhhhhHHHHHHHHHHhhHHHHHHH
Q psy6681 155 YIVFLMFINGVA-FLILMGCYLKMYCAIRGS-QAWNSNDSRIAKRMALLVFTDLLCWFPIALVA 216 (537)
Q Consensus 155 ~~~~~~~~f~iP-~liii~~Y~~I~~~lrk~-~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~ 216 (537)
+++.-..++++- ..+++.-+.. ..++|+. +...++..|.-|.+.=+-+..++..+|..+..
T Consensus 182 fvl~Pl~i~l~iG~~fL~~G~~~-l~rir~~~~~~~~~~~Kl~klm~RiGiFsvly~vp~~~~i 244 (328)
T PF01534_consen 182 FVLAPLFIYLLIGTVFLLAGFVS-LFRIRRSMKHDGTKTSKLEKLMIRIGIFSVLYLVPALIVI 244 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222 1111111122 2333332 22224455666666555555555566665433
No 35
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=96.27 E-value=0.0013 Score=60.27 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q psy6681 23 FLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLN 102 (537)
Q Consensus 23 ~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~ 102 (537)
.|+.++.+++++..+..............+ ...|.....=+....+..+++....+...+|+++|-..|.+|+...
T Consensus 5 vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~----~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~ 80 (153)
T PF03383_consen 5 VYIYNMIICGIIDKFFIFVDFWIPLFLPDE----GYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSE 80 (153)
T ss_pred EEEeHHHHhhHHHHHHHHhhhhhhhccChh----HHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCc
Confidence 467788888887776643332221211111 0111111122233556677778888899999999999999999866
Q ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhee-------ecccCcceecccCCCCcchhhhhH
Q psy6681 103 KRLSLKHAGYIMVCGWSFAILMAVLPLFGI-------SDYRKYATCLPFETTTGVWSLTYI 156 (537)
Q Consensus 103 ~~~t~k~~~iii~iiWiislli~i~p~~~~-------~~~~~~~~C~~~~~~~~~~~~~~~ 156 (537)
.++|.++.++.+.++.++.+...+.|.+.. ........|.++.......+..|.
T Consensus 81 ~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~Cap~rHpiT~fqN~Y~ 141 (153)
T PF03383_consen 81 IWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSACAPDRHPITLFQNTYL 141 (153)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEccCCCCCceeeeeecee
Confidence 689999999999988888888777776521 122344568775433333333343
No 36
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.19 E-value=0.0085 Score=48.51 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=54.0
Q ss_pred cccchhhhhhHHHHHHHHHHhhH-HHHHHHHHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchH
Q psy6681 188 NSNDSRIAKRMALLVFTDLLCWF-PIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQ 256 (537)
Q Consensus 188 ~~~~~r~~k~L~~ivliFllcwl-P~~I~~il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~ 256 (537)
+++-+|.++.|++--++|+++|+ |+.+-.+-............+..+..++..+|+++|-++|.+.-+.
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 34556788899999999999999 9877666555433334556788889999999999999999886554
No 37
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.95 E-value=0.95 Score=46.13 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=105.5
Q ss_pred chHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhHHHHHHHHHHH
Q psy6681 2 LGNGTVVFVLIFARSKI-DVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELS 80 (537)
Q Consensus 2 vGN~lVl~vi~~~k~lr-~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g~~C~v~~~l~~~~~~~S 80 (537)
+|.++++.-+..+-+-+ .++-.+++.+.++++...+-.+. +..+ ..+.|+ ..|.+..-+.......-
T Consensus 6 i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiI------W~~n----~~~~~~--~wCDI~~kl~~~~~~g~ 73 (283)
T PF02076_consen 6 IAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAII------WRDN----DINWWP--VWCDISTKLIIGSSVGI 73 (283)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhh------cCCC----CCccCc--eeeeehHHHHHHHHHHH
Confidence 45566665555544444 56678888999988877542221 2222 122344 78999988777766665
Q ss_pred HHHHHHHHHHHHHHhhccCccc--cccccchhhhHHHHHHHHHHHHhhhhhheee-cc--cCcceecccCCCCcchhhhh
Q psy6681 81 VFTLAVITLERNYAITHAMHLN--KRLSLKHAGYIMVCGWSFAILMAVLPLFGIS-DY--RKYATCLPFETTTGVWSLTY 155 (537)
Q Consensus 81 v~~l~~IsIDRYiaI~~Pl~y~--~~~t~k~~~iii~iiWiislli~i~p~~~~~-~~--~~~~~C~~~~~~~~~~~~~~ 155 (537)
....++|+..=| .|..+-... ..-++|+..+=.+++++++++......+..+ .| -+...|.+....... .+
T Consensus 74 ~~a~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~---~~ 149 (283)
T PF02076_consen 74 PAASLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWP---TI 149 (283)
T ss_pred HHHHHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHH---HH
Confidence 555555544333 244332211 1112566666678888888888766554322 22 245567554333221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------cccccchhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q psy6681 156 IVFLMFINGVAFLILMGCYLKMYCAIRGSQ---------AWNSNDSRIAKRMALLVFTDLLCWFPIALVALTA 219 (537)
Q Consensus 156 ~~~~~~~f~iP~liii~~Y~~I~~~lrk~~---------~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~ 219 (537)
.++.+--.++.++..+++-.-+.+..++++ ...-+..|. ..|+.+.++.+++.+|..+..++.
T Consensus 150 ~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~l~~~Rf-~RL~~la~~~i~~~~P~~i~~~v~ 221 (283)
T PF02076_consen 150 FLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSSNSGLNTSRF-FRLLALALVIILIYLPLSIYYLVS 221 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112222222222222222222221 111122344 457888888999999999988883
No 38
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=95.65 E-value=0.11 Score=53.50 Aligned_cols=135 Identities=10% Similarity=0.141 Sum_probs=82.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccC
Q psy6681 66 CQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFE 145 (537)
Q Consensus 66 C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~ 145 (537)
=++..++...+.+.+.+.-.+.++-|-+.+..|..+.+. ..+-..+.+-++.+++++.+.|.+... +.|....
T Consensus 103 Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~------G~C~Ql~ 175 (307)
T PF10322_consen 103 LKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPAL------GYCRQLD 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCc------EEEEeCC
Confidence 356677888889999999999999999999999876443 444445666677777777775544332 2342211
Q ss_pred C-----------CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------cccccchhhhhhHHHHHHHHHH
Q psy6681 146 T-----------TTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ------AWNSNDSRIAKRMALLVFTDLL 207 (537)
Q Consensus 146 ~-----------~~~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~------~~~~~~~r~~k~L~~ivliFll 207 (537)
. ..............+...+-+++++++++.+++++|+.+ ++++.++|+-+.|.+.+++-++
T Consensus 176 ~Pf~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mli 254 (307)
T PF10322_consen 176 PPFPFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLI 254 (307)
T ss_pred CCCCCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHH
Confidence 0 000111112233333345566777888888888888754 2334455666665555544443
No 39
>KOG4289|consensus
Probab=94.43 E-value=0.29 Score=58.04 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=92.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecc
Q psy6681 64 AGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLP 143 (537)
Q Consensus 64 ~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~ 143 (537)
..|.+...+..+.+.+.+..+.+-+++-|-+..--.. .--.....++.|.+..++....+ + -...|+.
T Consensus 2224 ~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~------tg~mrfy~~vGwgvPa~itglav-g-----ldDfCwl 2291 (2531)
T KOG4289|consen 2224 FYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVD------TGPMRFYYLVGWGVPALITGLAV-G-----LDDFCWL 2291 (2531)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC------CCceeEEEEeecchhhheeeeee-c-----ccceeec
Confidence 6899999999999999888888888877777765221 11112233455888776663322 2 2357865
Q ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHH
Q psy6681 144 FETTTGVWSLTYIVFLMFINGVAFLIL--MGCYL-----KMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVA 216 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~f~iP~lii--i~~Y~-----~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~ 216 (537)
...+...|. |..|..+. +-.|. ++-..-+.+.--++...+..+..++++++.-..|+-..
T Consensus 2292 S~h~~LiWs----------fagPigl~i~ms~~~~~lsa~vSc~~k~~~f~kK~~v~~lq~~fl~llllsatwl~~l--- 2358 (2531)
T KOG4289|consen 2292 SPHDTLIWS----------FAGPIGLVILMSFYAAALSARVSCHKKYQVFVKKGNVSVLQHSFLLLLLLSATWLLGL--- 2358 (2531)
T ss_pred ccchheeee----------ecccceeeehHHHHHHHHHHHHhhhhhheeeeeccchhhhHHHHHHHHHHHHHHHHHH---
Confidence 443322211 22222111 11111 11111111111122233444444554444444444322
Q ss_pred HHHHHcccccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHH
Q psy6681 217 LTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCV 262 (537)
Q Consensus 217 il~~~~~~~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~ 262 (537)
+.. ...+-.+.++...+.++...+=-++|+..|.+.|++++
T Consensus 2359 -l~v----n~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2359 -LAV----NPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred -Hhc----CCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 111 12344556677777778888888899999999999987
No 40
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=92.77 E-value=0.28 Score=47.01 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=57.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecc
Q psy6681 64 AGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLP 143 (537)
Q Consensus 64 ~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~ 143 (537)
..|.+..-+...+........+++|++||+.|..-.+- ..-....+-.++-+.- ++.+...+..++....+.|..
T Consensus 115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl----~~~f~v~v~~iit~~~-~~~a~~~~~~G~~t~NdiCa~ 189 (226)
T PF06681_consen 115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRL----SVWFVVVVHVIITFPF-IFYAILNFPFGEPTPNDICAI 189 (226)
T ss_pred EeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccC----CchHHHHHHHHHHHHH-HHHHHHhcccCCCCcCCeeeE
Confidence 78988876666666666667778999999999874442 2222222222221111 222233344566667788976
Q ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6681 144 FETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRG 183 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk 183 (537)
........ .+.....+.++ ++.++.+..|++.++|
T Consensus 190 L~fs~~~~----~Vri~~tl~l~-lfAVl~N~~i~~fvkk 224 (226)
T PF06681_consen 190 LRFSKSME----LVRISYTLGLN-LFAVLLNFVILRFVKK 224 (226)
T ss_pred EEEccchH----HHHHHHHhHHH-HHHHHHHHhHheeeec
Confidence 54433221 11111122233 3444455566665554
No 41
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=89.07 E-value=28 Score=35.42 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHc
Q psy6681 152 SLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICG 222 (537)
Q Consensus 152 ~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~ 222 (537)
...+..+..++.++-.+..++.-.+++.++++.+...+.++|..+-+..++.+..+|.+--.++.++..+.
T Consensus 162 ~~i~~~~~A~isli~a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~~~~~~~ 232 (281)
T PF06454_consen 162 SIIYAIFIAVISLIAALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMVLFSAFD 232 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444455555555556788888888654444445556667777777788877777776655543
No 42
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=86.14 E-value=14 Score=37.98 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHH
Q psy6681 195 AKRMALLVFTDLLCWFPIALVALTA 219 (537)
Q Consensus 195 ~k~L~~ivliFllcwlP~~I~~il~ 219 (537)
-...+-.++.|++.+..|++..++.
T Consensus 229 H~~a~k~~~sfl~ly~~~~~~~~~~ 253 (303)
T PF05296_consen 229 HIRAIKTMISFLILYIIYFLSLILS 253 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777776665543
No 43
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=83.28 E-value=50 Score=32.65 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=36.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccc
Q psy6681 64 AGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLS 106 (537)
Q Consensus 64 ~~C~v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t 106 (537)
..|+.......+..+.+++.-..+++|||+|....-+|.+..+
T Consensus 83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~ 125 (236)
T PF02175_consen 83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRT 125 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCce
Confidence 5677788888899999999999999999999999878766544
No 44
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=69.20 E-value=1.1e+02 Score=33.72 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHh
Q psy6681 68 MAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMA 125 (537)
Q Consensus 68 v~~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~ 125 (537)
..+.++.+.....-+.+.+.++ |+.|.+|+..-....+-.-.+.+++.|+...++.
T Consensus 47 l~g~lY~~~s~lGhFsflvFA~--yLlvlfpltfiv~s~rl~r~l~vi~stag~tLLl 102 (600)
T COG3083 47 LAGRLYLYVSILGHFSFLVFAL--YLLVLFPLTFIVLSQRLFRFLSVILSTAGMTLLL 102 (600)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777777777766 8999999764222222223334455666665544
No 45
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=60.16 E-value=75 Score=32.15 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhhhhe
Q psy6681 115 VCGWSFAILMAVLPLFG 131 (537)
Q Consensus 115 ~iiWiislli~i~p~~~ 131 (537)
.-.|.+.++.-++|.+.
T Consensus 118 ~~~~~i~~i~wi~p~li 134 (283)
T PF10323_consen 118 AKIWIIILIQWIPPLLI 134 (283)
T ss_pred cchhheeeeeehhhhhh
Confidence 33555555554455543
No 46
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=59.45 E-value=56 Score=35.73 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=17.0
Q ss_pred cccccchhhhHHHHHHHHHHHHhhhhhheee
Q psy6681 103 KRLSLKHAGYIMVCGWSFAILMAVLPLFGIS 133 (537)
Q Consensus 103 ~~~t~k~~~iii~iiWiislli~i~p~~~~~ 133 (537)
+.+..-.+.++.++..+-++++.++|.++|.
T Consensus 90 r~l~~~~~~~L~l~aflSPiaflvLP~il~~ 120 (505)
T PF06638_consen 90 RYLGLILASILGLLAFLSPIAFLVLPKILWR 120 (505)
T ss_pred eeHHHHHHHHHHHHHHHhhHHHHHhcccccC
Confidence 3333334444555566666666666666664
No 47
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=54.51 E-value=2.3e+02 Score=28.08 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc-cccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCC
Q psy6681 70 GFMSVLSAELSVFTLAVITLERNYAITHAMHLNKR-LSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTT 148 (537)
Q Consensus 70 ~~l~~~~~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~-~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~ 148 (537)
.++......+--+.+.++|++|++--.+|-.-+.. .+.|.....+..+.++.++-.+..............+ .. .
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~---~~-~ 161 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNEST---EE-I 161 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---hh-h
Confidence 33444444555577889999999999999742222 3445444444444444443322211111100000000 00 1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy6681 149 GVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ 185 (537)
Q Consensus 149 ~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~ 185 (537)
......+....+.. -+-+++...+|+-|...+||.+
T Consensus 162 ~~~~~~~~~~~~~~-~~ll~~S~lLYIPI~isirK~~ 197 (267)
T PF10325_consen 162 ETFSYIYVIFYIIL-NILLFLSALLYIPIFISIRKLS 197 (267)
T ss_pred hHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhh
Confidence 11122222222222 2456667788999999888755
No 48
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=51.27 E-value=35 Score=33.13 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=13.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q psy6681 64 AGCQMAGFMSVLSAELSVFTLA 85 (537)
Q Consensus 64 ~~C~v~~~l~~~~~~~Sv~~l~ 85 (537)
..|.+..++...+.....-.+.
T Consensus 54 ~~C~~r~~~~~l~f~l~~~~ll 75 (238)
T PF00003_consen 54 ILCTLRRWLFSLGFTLIFSALL 75 (238)
T ss_pred cEEEEeeeeeeeehHhhhhHHH
Confidence 5788877766555554444433
No 49
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=47.31 E-value=3.6e+02 Score=31.22 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=20.1
Q ss_pred ccccchhh-hHHHHHHHHHHHHhhhhhheeec
Q psy6681 104 RLSLKHAG-YIMVCGWSFAILMAVLPLFGISD 134 (537)
Q Consensus 104 ~~t~k~~~-iii~iiWiislli~i~p~~~~~~ 134 (537)
+...-+.+ +..+..|+++++-.+.-.++..+
T Consensus 565 WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~ 596 (720)
T PF03552_consen 565 WWRNQQFWMIGGTSAHLFAVLQGILKVLGGSE 596 (720)
T ss_pred hhcccceeeehhhHHHHHHHHHHHHHHHcCCc
Confidence 33333333 34567899999888877776554
No 50
>PF13853 7tm_4: Olfactory receptor
Probab=41.10 E-value=2.2 Score=38.78 Aligned_cols=101 Identities=12% Similarity=0.095 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHhhhhhheeecc----cCcceecccC------CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6681 111 GYIMVCGWSFAILMAVLPLFGISDY----RKYATCLPFE------TTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCA 180 (537)
Q Consensus 111 ~iii~iiWiislli~i~p~~~~~~~----~~~~~C~~~~------~~~~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~ 180 (537)
..+.++.|+.+++..++..+....+ .....|.... .+...+.........+..++|++++++.|..|+..
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 3456677888877766555432221 1111221110 12222222233333344578999999999999998
Q ss_pred HHhCCcccccchhhhhhHHHHHHHHHHhhHHH
Q psy6681 181 IRGSQAWNSNDSRIAKRMALLVFTDLLCWFPI 212 (537)
Q Consensus 181 lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~ 212 (537)
+.|..... .++|+..+......+..+.+.|.
T Consensus 84 vlki~S~~-~r~KAfsTC~sHL~vv~lfy~~~ 114 (144)
T PF13853_consen 84 VLKIPSAE-GRSKAFSTCSSHLTVVSLFYGTV 114 (144)
T ss_pred hhcccccc-cccccccccccCceEEEEeeeee
Confidence 88865333 33466666555444444444443
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.89 E-value=1.1e+02 Score=35.51 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=14.4
Q ss_pred ccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q psy6681 64 AGCQMAGFMSVLSAELSVF-TLAVITLERNYAITHA 98 (537)
Q Consensus 64 ~~C~v~~~l~~~~~~~Sv~-~l~~IsIDRYiaI~~P 98 (537)
.+|.++..+.+=+...+++ ..++++.|-.+.+.-|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p 95 (697)
T PF09726_consen 60 LLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIP 95 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333 3334455544333333
No 52
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=32.28 E-value=5.5e+02 Score=26.04 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=9.9
Q ss_pred HHHhhhhhhHHHHHHHh
Q psy6681 236 VFVLPLNSCCNPFLYAI 252 (537)
Q Consensus 236 ~~l~~lns~iNPiIY~~ 252 (537)
..+....+.+|-++|.+
T Consensus 273 a~f~~~~gl~N~Yv~~l 289 (298)
T PF06664_consen 273 AFFLGFYGLWNFYVYTL 289 (298)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566677666654
No 53
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=30.78 E-value=1.7e+02 Score=34.57 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcc------cccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHc
Q psy6681 156 IVFLMFINGVAFLILMGCYLKMYCAIRG-SQAW------NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICG 222 (537)
Q Consensus 156 ~~~~~~~f~iP~liii~~Y~~I~~~lrk-~~~~------~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~ 222 (537)
.+..+++..+.++++++.++-+..-+.. +++. .....-..-.|+.+.++|+++|+-..+..++...+
T Consensus 414 ~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G 487 (806)
T PF05478_consen 414 WIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYFLVG 487 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555544 2211 12333445567778888999998887777666554
No 54
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.28 E-value=3.9e+02 Score=33.19 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=12.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q psy6681 64 AGCQMAGFMSVLSAELSVFTLAVI 87 (537)
Q Consensus 64 ~~C~v~~~l~~~~~~~Sv~~l~~I 87 (537)
..-.+..++..++...+.++.+++
T Consensus 67 VGA~LAD~L~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 67 PGAWLADTLFFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444445555555555555544433
No 55
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.89 E-value=2e+02 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy6681 79 LSVFTLAVITLERNYAITHA 98 (537)
Q Consensus 79 ~Sv~~l~~IsIDRYiaI~~P 98 (537)
.-+|.++.+.+|||+...-.
T Consensus 52 glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 52 GLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 35788999999999987643
No 56
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=29.52 E-value=9.9e+02 Score=28.12 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=14.7
Q ss_pred ccchhhhhhHHHHHHHHHHhhHHHHHH
Q psy6681 189 SNDSRIAKRMALLVFTDLLCWFPIALV 215 (537)
Q Consensus 189 ~~~~r~~k~L~~ivliFllcwlP~~I~ 215 (537)
.-.+.+-+.+.++..++++.+.-.+.+
T Consensus 194 ~~~~~a~~hL~~L~~~~~l~~a~~y~L 220 (774)
T PF03699_consen 194 RFSRAARRHLSILLALFFLLKAVGYWL 220 (774)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666555544433
No 57
>PRK00068 hypothetical protein; Validated
Probab=29.24 E-value=1.1e+03 Score=28.52 Aligned_cols=22 Identities=18% Similarity=-0.126 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHhhHHHH
Q psy6681 192 SRIAKRMALLVFTDLLCWFPIA 213 (537)
Q Consensus 192 ~r~~k~L~~ivliFllcwlP~~ 213 (537)
+.+-+.+.++..+|++...-.+
T Consensus 209 ~~ar~hl~~l~~~~~ll~a~~y 230 (970)
T PRK00068 209 RFARKQLAVLAGLLMLLKAVGY 230 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666555433
No 58
>PF08867 FRG: FRG domain; InterPro: IPR014966 This entry contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised.
Probab=29.02 E-value=21 Score=30.45 Aligned_cols=14 Identities=50% Similarity=0.869 Sum_probs=12.4
Q ss_pred ccccccCCcccccC
Q psy6681 396 QNHHHCGIPMRLLD 409 (537)
Q Consensus 396 ~~~~~~~~~~~~~~ 409 (537)
+-.||.|+|-||||
T Consensus 65 al~QHyGlpTrLLD 78 (104)
T PF08867_consen 65 ALAQHYGLPTRLLD 78 (104)
T ss_pred HHHhhcCCCcccee
Confidence 35889999999999
No 59
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=27.74 E-value=3.5e+02 Score=24.28 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=21.7
Q ss_pred cccchhhhhhHHHHHHHHHHhhHHHHHH
Q psy6681 188 NSNDSRIAKRMALLVFTDLLCWFPIALV 215 (537)
Q Consensus 188 ~~~~~r~~k~L~~ivliFllcwlP~~I~ 215 (537)
.+.+++.....+.+..+|++|++-+...
T Consensus 31 ~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~ 58 (133)
T PF04238_consen 31 IKLHRKLMLTAFVLSALFLVSYLYYHFL 58 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888899998877655
No 60
>KOG4220|consensus
Probab=27.16 E-value=8.4e+02 Score=26.54 Aligned_cols=77 Identities=10% Similarity=0.030 Sum_probs=45.5
Q ss_pred ccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHc----cccc------chHHHHHHHHHHhhhhhhHHHHHHHhcchHHH
Q psy6681 189 SNDSRIAKRMALLVFTDLLCWFPIALVALTAICG----VHLV------SLEQAKIFTVFVLPLNSCCNPFLYAILTKQFK 258 (537)
Q Consensus 189 ~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~----~~~~------~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR 258 (537)
+..+|+..|+..--++-++.|.|..+..=+..-. .+.+ .+..-+--+..-.|+.-.+--++|.-..++-|
T Consensus 142 RTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~ 221 (503)
T KOG4220|consen 142 RTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETR 221 (503)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4456666677777777889999986653222111 0111 11111222233446777777889988888888
Q ss_pred HHHHHHH
Q psy6681 259 KDCVMIC 265 (537)
Q Consensus 259 ~~l~~l~ 265 (537)
+..+++=
T Consensus 222 kR~k~~~ 228 (503)
T KOG4220|consen 222 KRQKELA 228 (503)
T ss_pred HHHHhhh
Confidence 8877643
No 61
>PRK12438 hypothetical protein; Provisional
Probab=26.68 E-value=1.2e+03 Score=28.22 Aligned_cols=24 Identities=8% Similarity=-0.122 Sum_probs=13.9
Q ss_pred chhhhhhHHHHHHHHHHhhHHHHH
Q psy6681 191 DSRIAKRMALLVFTDLLCWFPIAL 214 (537)
Q Consensus 191 ~~r~~k~L~~ivliFllcwlP~~I 214 (537)
.+.+-+.+.++..+|++.+.-.+.
T Consensus 206 s~~ar~hL~vl~~~~~ll~A~~yw 229 (991)
T PRK12438 206 TQAARVQLAVFAGAFVLLKAVAYW 229 (991)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777766555433
No 62
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=26.46 E-value=2.3e+02 Score=28.47 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy6681 113 IMVCGWSFAILMAVLPLF 130 (537)
Q Consensus 113 ii~iiWiislli~i~p~~ 130 (537)
.-.+.|..+.++++|++=
T Consensus 200 ~~~l~w~aA~LFAlp~lR 217 (256)
T PF14494_consen 200 PPMLTWMAAMLFALPPLR 217 (256)
T ss_pred cchHHHHHHHHHhhhhHh
Confidence 456889999999988764
No 63
>KOG2575|consensus
Probab=26.44 E-value=3.4e+02 Score=29.24 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.4
Q ss_pred chhhhhhHHHHHHHHHHhhHHHHHHH
Q psy6681 191 DSRIAKRMALLVFTDLLCWFPIALVA 216 (537)
Q Consensus 191 ~~r~~k~L~~ivliFllcwlP~~I~~ 216 (537)
-.++.+.-++++++|+++|+|+....
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46777888889999999999997643
No 64
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.32 E-value=1.2e+03 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=16.2
Q ss_pred chhhhHHHHHHHHHHHHhhhhhheeec
Q psy6681 108 KHAGYIMVCGWSFAILMAVLPLFGISD 134 (537)
Q Consensus 108 k~~~iii~iiWiislli~i~p~~~~~~ 134 (537)
+...+-...+|+++++-.+.-.++..+
T Consensus 888 q~w~I~~tSa~Lfavl~~iLKvLg~se 914 (1044)
T PLN02915 888 QFWVIGGVSAHLFAVFQGLLKVLGGVD 914 (1044)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 333344556888888766666665443
No 65
>PF15383 TMEM237: Transmembrane protein 237
Probab=25.62 E-value=2.9e+02 Score=27.73 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcc-CccccccccchhhhHHHHHHHHHHHHhhhh
Q psy6681 85 AVITLERNYAITHA-MHLNKRLSLKHAGYIMVCGWSFAILMAVLP 128 (537)
Q Consensus 85 ~~IsIDRYiaI~~P-l~y~~~~t~k~~~iii~iiWiislli~i~p 128 (537)
++-++|||= +.+. ....+.......-.+.+++|++++++++..
T Consensus 153 ~VSafDr~d-l~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~ 196 (253)
T PF15383_consen 153 TVSAFDRYD-LAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSC 196 (253)
T ss_pred HHhhhhhHH-hhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Confidence 344678874 3333 222233344444555666788888877643
No 66
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.53 E-value=25 Score=35.54 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy6681 152 SLTYIVFLMFINGVAFLILMGCYLK 176 (537)
Q Consensus 152 ~~~~~~~~~~~f~iP~liii~~Y~~ 176 (537)
+..|+-++++++.+-+.+.+.||..
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Ym~ 127 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFYMW 127 (381)
T ss_dssp -------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555556666777778833
No 67
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=24.34 E-value=4.6e+02 Score=22.60 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHH
Q psy6681 160 MFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVA 216 (537)
Q Consensus 160 ~~~f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~ 216 (537)
....+++.+++++.-.++++.+.+.+--..+..|..+.+....++..++........
T Consensus 29 ~~~~~~~~~~~l~~~~~ll~~i~~~~~Fs~~n~~~l~~ig~~~l~~~~~~~~~~~~~ 85 (136)
T PF11188_consen 29 GLLVLLLILIALYQLRRLLRNIQKGKPFSPENIRRLRRIGWLLLIISILSFIANFIL 85 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567788888888888888888765566677777777777777666555554433
No 68
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=22.54 E-value=5.1e+02 Score=22.37 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHHHHHHHHHhh
Q psy6681 174 YLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLP 240 (537)
Q Consensus 174 Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l~~i~~~l~~ 240 (537)
.+.+.+.+|+++ -+.+....-+++.++..++...|..+..+....+... .++.++++...+.+
T Consensus 16 ~~~ii~~vr~~~---l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~-~~n~lf~~~i~~ll 78 (115)
T PF10066_consen 16 LLFIIRLVRKRK---LRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGR-PPNLLFYLGILFLL 78 (115)
T ss_pred HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCc-hhHHHHHHHHHHHH
Confidence 334555555543 2233444444455555667778887777777777553 34444444444433
No 69
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=22.34 E-value=5.3e+02 Score=27.34 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHcccccchHHHHH-----HHHH
Q psy6681 163 NGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKI-----FTVF 237 (537)
Q Consensus 163 f~iP~liii~~Y~~I~~~lrk~~~~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~~~~~l~~-----i~~~ 237 (537)
.+++.++..+........+.++.+.-.+--+.....+.-++-++++..|+.+..++........ ...+.. +..+
T Consensus 137 ~~L~ivvfai~~G~al~~~~~~~~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~-~~~l~~l~~~v~~~~ 215 (390)
T PF00375_consen 137 NILGIVVFAILFGVALGRLGEKGKPLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIATQG-LSILGALGKFVLTVY 215 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSC-CGHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhHHHHHHHHHHHH
Confidence 4677788888888777777666532223333444555566678999999999888766542211 111111 1111
Q ss_pred H-hhh-hhhHHHHHHHhcch-HHHHHHHHHHh
Q psy6681 238 V-LPL-NSCCNPFLYAILTK-QFKKDCVMICK 266 (537)
Q Consensus 238 l-~~l-ns~iNPiIY~~~nk-~FR~~l~~l~~ 266 (537)
+ ..+ -..+.|+++.+..+ +..+-++++..
T Consensus 216 ~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~ 247 (390)
T PF00375_consen 216 VALLIHLFVVLPLILFVLTRKNPFKFLKAMLP 247 (390)
T ss_dssp HHHHHHHHHTHHHHHH-TTT--HHHHHHHTHH
T ss_pred HHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHH
Confidence 1 122 34678888884444 56655555443
No 70
>PF03821 Mtp: Golgi 4-transmembrane spanning transporter; InterPro: IPR004687 LAPTM4 and 5 are lysosome-associated transmembrane proteins, found in mammals, insects and nematodes. ; GO: 0016021 integral to membrane
Probab=21.84 E-value=7.9e+02 Score=24.35 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6681 18 IDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEF-RMYAIPWQMSAGCQM-AGFMSVLSAELSVFTLAVITLERNYAI 95 (537)
Q Consensus 18 r~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~-~~~~~~W~~g~~C~v-~~~l~~~~~~~Sv~~l~~IsIDRYiaI 95 (537)
|..-.+-.+.++..|++.+++.+...+......+.. ......|...++|.- ..|...+...++.++ -.=++.+|...
T Consensus 61 re~~~~~fl~~q~m~~~l~i~~l~~~i~~m~~Yga~~~~~~~~~llPFfclQlFDF~Ls~Lta~ss~~-y~psi~~~~~~ 139 (233)
T PF03821_consen 61 RERYLLPFLSLQNMDVLLAILTLMFSIIEMMAYGAIKRKRRPGWLLPFFCLQLFDFCLSILTACSSLM-YVPSILNLKSQ 139 (233)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHhhhc-cccHHHHHHHh
Confidence 333344555777777777765443333322222211 112234655555642 233332222222222 11156677777
Q ss_pred hcc--Ccccc
Q psy6681 96 THA--MHLNK 103 (537)
Q Consensus 96 ~~P--l~y~~ 103 (537)
-+. +-++.
T Consensus 140 ~~~n~fP~ke 149 (233)
T PF03821_consen 140 NPMNYFPYKE 149 (233)
T ss_pred cccccCCccc
Confidence 665 44443
No 71
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=20.51 E-value=1.5e+02 Score=26.52 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=34.5
Q ss_pred cccccccchhhhHHHHHHHHHHHHhhhhhheeecccCcceecccCCCCcchhhhhHHHHHHHHHHHHHHHH
Q psy6681 101 LNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILM 171 (537)
Q Consensus 101 y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~f~iP~liii 171 (537)
|..+.+.+..-+.+++.-...+++.+..++ ...|.+.|..+.....+-.+..++++.||+.+..
T Consensus 32 y~~R~~~~Y~~LfiVFl~AG~vLw~vM~~i-------Fd~CIDsWkAdpeLnn~rymWNilMYaIPy~L~A 95 (141)
T PRK13743 32 YERRVSDIYFDLFIVFLTAGIVLWVIMHSI-------FDACIDSWKADPELNNFRYMWNILMYVIPYTLWA 95 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHhhhcChhhhhHHHHHHHHHHHHHHHHHH
Confidence 344445555544444433344444433333 4568777766665555556666666777765544
No 72
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.02 E-value=1.3e+03 Score=26.21 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhccCccccccccchhh
Q psy6681 82 FTLAVITLERNYAITHAMHLNKRLSLKHAG 111 (537)
Q Consensus 82 ~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~ 111 (537)
+.+++.--|+|.+-.+|+-..+.++.++..
T Consensus 283 ~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~ 312 (599)
T PF06609_consen 283 LLVAFVVWEWFGAPKDPLFPHRLFKDRRGF 312 (599)
T ss_pred HHHHHHHhhhhccCCCCcCCHHHhccchHH
Confidence 444556678888878898766777654443
No 73
>KOG2302|consensus
Probab=20.01 E-value=1.4e+03 Score=27.98 Aligned_cols=23 Identities=9% Similarity=0.051 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHh
Q psy6681 230 QAKIFTVFVLPLNSCCNPFLYAI 252 (537)
Q Consensus 230 ~l~~i~~~l~~lns~iNPiIY~~ 252 (537)
.+++++.++++.+-.+|-||=.+
T Consensus 1362 llYfIsfllIvsffVlnmfVgvv 1384 (1956)
T KOG2302|consen 1362 LLYFISFLLIVSFFVLNMFVGVV 1384 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888888776554
Done!