RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6681
(537 letters)
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 139 bits (351), Expect = 6e-37
Identities = 57/272 (20%), Positives = 109/272 (40%), Gaps = 21/272 (7%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
N ++V + + +++ NLA AD FM G + S G F
Sbjct: 53 FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF-GGFTTTLYTSLHGYFVFG---- 107
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
GC + GF + L E+++++L V+ +ER + M N R HA + W
Sbjct: 108 --PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVM 164
Query: 121 AILMAVLPLFGISDYR---KYATCLP--FETTTGVWSLTYIVFLMFINGVAFLILMG-CY 174
A+ A PL G S Y +C + + ++++++ ++ + LI++ CY
Sbjct: 165 ALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCY 224
Query: 175 LKMYCAIRGSQAWN-------SNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVS 227
++ ++ + A + + + + ++V L+CW P A VA
Sbjct: 225 GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDF 284
Query: 228 LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKK 259
F ++ NP +Y ++ KQF+
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 316
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 138 bits (350), Expect = 5e-36
Identities = 67/355 (18%), Positives = 133/355 (37%), Gaps = 31/355 (8%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
GNG V+++ +S + NLA +DF L G + + L ++
Sbjct: 49 CGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFG---- 104
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
A C++ GF+ + +S+ T+A+I+++R I M +K++S + A +++ W +
Sbjct: 105 --FAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLW 162
Query: 121 AILMAVLPLFGISDY---RKYATCLPFETTTGVWSLTYIVFLMFINGVA-FLILMGCYLK 176
++L A+ P+FG Y C + + + I+ + + LI+ CY
Sbjct: 163 SVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFN 222
Query: 177 MYCAIRG-------------------SQAWNSNDSRIAKRMALLVFTDLLCWFPIALVAL 217
+ ++ +QA + + R+AK ++V LL W P A+VAL
Sbjct: 223 IVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVAL 282
Query: 218 TAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGI 277
A G A V ++ NP +Y++ +F++ +
Sbjct: 283 LAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDK 342
Query: 278 GRCRHSSNFSNRQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRP 332
+ + P +S S+ + P+ + P
Sbjct: 343 E--TEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAP 395
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 124 bits (313), Expect = 4e-31
Identities = 66/307 (21%), Positives = 113/307 (36%), Gaps = 30/307 (9%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDAS---TLGEFRMYA 57
+LGN V++V++ + NLA AD + L L G
Sbjct: 140 LLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNA---- 195
Query: 58 IPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCG 117
C+ + + S FTL ++++R AI H + + A + V
Sbjct: 196 -------LCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAI 248
Query: 118 WSFAILMAVLPLFGISDYRKYA---TCLP-FETTTGVWSLTYIVFLMFING--VAFLILM 171
W+ A ++ +P+ + + CL T W + + +F+ V L++
Sbjct: 249 WALASVVG-VPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAI-CIFLFSFIVPVLVIS 306
Query: 172 GCYLKMYCAIR------GSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHL 225
CY M +R GS+ + N RI + + ++V + CW P+ + L GV
Sbjct: 307 VCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQP 366
Query: 226 VS--LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHS 283
S F + +NSC NP LYA L + FK C R + + H
Sbjct: 367 SSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPHH 426
Query: 284 SNFSNRQ 290
+ +
Sbjct: 427 HHHHHHH 433
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 118 bits (297), Expect = 2e-29
Identities = 55/325 (16%), Positives = 114/325 (35%), Gaps = 43/325 (13%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDAST----LGEFRMY 56
++GN V+++++ + V + + NLA A+ M + ++ A G F
Sbjct: 47 VVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLF--- 103
Query: 57 AIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVC 116
C+ F + + S++++ + +R AI H L RLS ++
Sbjct: 104 --------YCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIH--PLQPRLSATATKVVICV 153
Query: 117 GWSFAILMAVLPLFGISDYRKY---ATCLPF--ETTTGVWSLTYIVFLMFINGVAFLILM 171
W A+L+A P S C+ E ++ Y + + + L+++
Sbjct: 154 IWVLALLLA-FPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVI 212
Query: 172 G-CYLKMYCAIRGS----------QAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAI 220
G Y + + S S ++ K M ++V T +CW P + L
Sbjct: 213 GYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPY 272
Query: 221 CGVHLVSLEQAKIFTVFVLPL---NSCCNPFLYAILTKQFKKD------CVMICKTIEES 271
L + + + ++ L ++ NP +Y L +F+ C +
Sbjct: 273 INPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYE 332
Query: 272 RVTRGIGRCRHSSNFSNRQTPGNTN 296
+ R + + + T
Sbjct: 333 GLEMKSTRYLQTQGSVYKVSRLETT 357
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 90.1 bits (223), Expect = 2e-19
Identities = 65/373 (17%), Positives = 120/373 (32%), Gaps = 34/373 (9%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDAS---TLGEFRMYA 57
+ GN V++V++ + NLA AD L +V G
Sbjct: 32 LFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNI---- 87
Query: 58 IPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCG 117
+ C++ + + S+FTL ++++R A+ H + + ++A + VC
Sbjct: 88 ----L---CKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN 140
Query: 118 WSFAILMAVLPLFGISDYRKYA---TCLP-FETTTGVWSLTYIVFLMFING--VAFLILM 171
W + + LP+ ++ + C F T W +FI + LI+
Sbjct: 141 WILSSAIG-LPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLK-ICVFIFAFIMPVLIIT 198
Query: 172 GCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQA 231
CY M ++ S RI + + L ++ + + + SL A
Sbjct: 199 VCYGLMILRLK-SVRNIFEMLRIDEGLRLKIY---KNTEGYYTIGIGHL-LTKSPSLNAA 253
Query: 232 KIFTVFVLPLNSCCN-PFLYAILTKQFKKDCVMICKTIEESR----VTRGIGRCRHSSNF 286
K + + N K F +D + I + V + R ++
Sbjct: 254 K--SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALI 311
Query: 287 SNRQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDC 346
+ G T +S + + L R P+R + T WD
Sbjct: 312 NMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA 371
Query: 347 LHLQRKNHRHIRT 359
R R R
Sbjct: 372 YEKDRNLRRITRM 384
Score = 49.6 bits (118), Expect = 1e-06
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 169 ILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVS- 227
+ + + + N RI + + ++V ++CW PI + + +
Sbjct: 358 KRVITTFRTGTWDAYEK--DRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETT 415
Query: 228 -LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICK 266
+ F + + NSC NP LYA L + FK+ C
Sbjct: 416 FQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCI 455
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 85.5 bits (212), Expect = 1e-18
Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 59/271 (21%)
Query: 23 FLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQM-----------SAGCQMAGF 71
+ +LA AD +GL +P+ S C++
Sbjct: 48 LFITSLACADLVVGLL------------------VVPFGATLVVRGTWLWGSFLCELWTS 89
Query: 72 MSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLF- 130
+ VL S+ TL VI ++R AIT ++ A I+ W+ + L++ LP+
Sbjct: 90 LDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM 149
Query: 131 -----GISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAF----LILMGCYLKMYCAI 181
K V + Y + I +F LI++ L++Y
Sbjct: 150 HWWRDEDPQALKCYQDPG--CCDFVTNRAYAIASSII---SFYIPLLIMIFVALRVYREA 204
Query: 182 R-------------GSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSL 228
+ S+ + + K + +++ LCW P LV + + LV
Sbjct: 205 KEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD 264
Query: 229 EQAKIFTVFVLPLNSCCNPFLYAILTKQFKK 259
F NS NP +Y + F+K
Sbjct: 265 WLFVAFNWLGY-ANSAMNPIIYC-RSPDFRK 293
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 85.3 bits (211), Expect = 8e-18
Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 22/240 (9%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
++GNG V+ V+ + + + +L+ AD + L AV W
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV----------DAVANW 112
Query: 61 QM-SAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWS 119
+ C+ + ++ SV+ LA I+L+R AI HA + + L + V W
Sbjct: 113 YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWI 172
Query: 120 FAILMAVLPLF---GISDYRKYATCLPFETTTGVWSLTYIVFLMFING--VAFLILMGCY 174
A+L+ +P F +S+ C F +W + + F + G + ++++ CY
Sbjct: 173 PALLLT-IPDFIFANVSEADDRYICDRF-YPNDLWVVVFQ-FQHIMVGLILPGIVILSCY 229
Query: 175 LKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVAL---TAICGVHLVSLEQA 231
+ + S + RI + + L ++ D ++ I + L + L++A
Sbjct: 230 CIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKA 289
Score = 46.4 bits (110), Expect = 2e-05
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 15/108 (13%)
Query: 171 MGCYLKMYCAIRGSQAW-NSNDSRIAKRMALLVFTDLLCWFPIALVALTAI--------- 220
+ + + + K +L+ CW P +
Sbjct: 390 ITTF---RTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQ 446
Query: 221 -CGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT 267
C + + T + + C NP LYA L +FK +
Sbjct: 447 GCEFENT-VHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTS 493
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 76.1 bits (187), Expect = 7e-15
Identities = 54/306 (17%), Positives = 106/306 (34%), Gaps = 56/306 (18%)
Query: 23 FLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQM-SAGCQMAGFMSVLSAELSV 81
+ + +LA AD MGL AVV W + C+ + VL S+
Sbjct: 219 YFITSLACADLVMGL-----AVVPFGAAHILTKT---WTFGNFWCEFWTSIDVLCVTASI 270
Query: 82 FTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLF---GISDYRKY 138
TL VI ++R +AIT L+ A I++ W + L + LP+ + +++
Sbjct: 271 ETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEA 330
Query: 139 ATCLPFETTTGV-WSLTYIVFLMFINGVAF----LILMGCYLKMYCAIR----------- 182
C ET + Y + + +F +I++ Y +++ +
Sbjct: 331 INCYAEETCCDFFTNQAYAIASSIV---SFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEG 387
Query: 183 ---------------------GSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAIC 221
S + + + K + +++ T LCW P +V + +
Sbjct: 388 RFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 447
Query: 222 GVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMI--CKTIEESRVTRGIGR 279
+L+ E + +NS NP +Y + F+ + + G
Sbjct: 448 QDNLIRKEVYILLNWIGY-VNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSS 505
Query: 280 CRHSSN 285
++
Sbjct: 506 NGNTGE 511
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 75.7 bits (185), Expect = 9e-15
Identities = 32/198 (16%), Positives = 73/198 (36%), Gaps = 12/198 (6%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+L N V+ + + + + NLA +D G+ ++ +T +
Sbjct: 78 ILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKL------- 130
Query: 61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
A + ++ SVF+L I +ER + N + ++ W
Sbjct: 131 -TPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGS-NNFRLFLLISACWVI 188
Query: 121 AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCA 180
++++ LP+ G + ++C T ++ YI+F + + L ++ Y ++Y
Sbjct: 189 SLILGGLPIMGWNCISALSSC---STVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSL 245
Query: 181 IRGSQAWNSNDSRIAKRM 198
+R + R+
Sbjct: 246 VRTRNIFEMLRIDEGLRL 263
Score = 41.4 bits (96), Expect = 6e-04
Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 188 NSNDSRIAKRMALLVFTDLLCWFPIALVAL-TAICGVHLVSLEQAKIFTVFVLPLNSCCN 246
+S + + K + +++ + CW P+ ++ L C V + + + + LNS N
Sbjct: 413 SSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTN 472
Query: 247 PFLYAILTKQFKKD-CVMICKTIEESRVTRGIGRCRHSSN 285
P +Y + K+ ++ ++ + +E H +
Sbjct: 473 PIIYTLTNKEMRRAFIRIMGRPLEVLFQGPHHHHHHHHHH 512
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 62.8 bits (152), Expect = 1e-10
Identities = 56/371 (15%), Positives = 118/371 (31%), Gaps = 31/371 (8%)
Query: 2 LGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQ 61
LGN V + + + +V + V +LAAAD +G+ A+ + +
Sbjct: 37 LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT----------ISTGFC 86
Query: 62 M-SAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
GC ++ + S+F+L I ++R AI + N ++ A I+ W
Sbjct: 87 AACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVL 146
Query: 121 AILMAVLPLFGISDYRKYA-------TCLPFETTTGVWSLTYIVFLMFINGVA-----FL 168
+ + + P+ G ++ + C + + + ++++ N A L
Sbjct: 147 SFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLL 206
Query: 169 ILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSL 228
+++G YL+++ A R Q RI + + L ++ D ++ I SL
Sbjct: 207 LMLGVYLRIFLAAR-RQLNIFEMLRIDEGLRLKIYKDTEGYYTIG----IGHLLTKSPSL 261
Query: 229 EQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSN 288
AK + N+ + + + +++ +
Sbjct: 262 NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAAL 321
Query: 289 RQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGE---RMSKPRPHRPRWSATKKVRRFWD 345
Q + + R P+R + T WD
Sbjct: 322 INMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWD 381
Query: 346 CLHLQRKNHRH 356
+ H
Sbjct: 382 AYRSTLQKEVH 392
Score = 49.0 bits (116), Expect = 3e-06
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 182 RGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVAL-TAICGVHLVSLEQAKIFTVFVLP 240
++ + AK +A++V LCW P+ ++ T C + + +
Sbjct: 381 DAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 440
Query: 241 LNSCCNPFLYAILTKQFKKDCVMI--CKTIEESRVTRGIGRCRHSSN 285
NS NPF+YA ++F++ I + + + H +
Sbjct: 441 TNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHHHHHHH 487
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 61.7 bits (149), Expect = 3e-10
Identities = 53/368 (14%), Positives = 115/368 (31%), Gaps = 27/368 (7%)
Query: 2 LGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQ 61
GNG V ++ R+ +LV +LA AD + + V T G W
Sbjct: 54 FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV-------WN 106
Query: 62 MSAG-CQMAGFMSVLSAELSVFTLAVITLERNYAITHAM---HLNKRLSLKHAGYIMVCG 117
S C + + V+ S++ L I+++R A+ + H + S + ++
Sbjct: 107 FSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAV 166
Query: 118 WSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAF----LILMGC 173
W A ++ LFG + C ++ F+++ + V+F + +
Sbjct: 167 WVLAFAVSCPLLFGFNTTGDPTVCS----------ISNPDFVIYSSVVSFYLPFGVTVLV 216
Query: 174 YLKMYCAIR-GSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAK 232
Y ++Y ++ + RI + + L ++ D ++ I + L + +
Sbjct: 217 YARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELD 276
Query: 233 IFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTP 292
+ ++ + R + +
Sbjct: 277 KAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALI-NMVFQM 335
Query: 293 GNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRK 352
G T +S + + L R P+R + T WD + +
Sbjct: 336 GETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLR 395
Query: 353 NHRHIRTD 360
+ +
Sbjct: 396 EKKATQMV 403
Score = 41.7 bits (97), Expect = 4e-04
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 189 SNDSRIAKRMALLVFTDLLCWFP-IALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNP 247
+ + + +A+++ ++CW P L C VS E T ++ +NS NP
Sbjct: 394 LREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATT-WLGYVNSALNP 452
Query: 248 FLYAILTKQFKK 259
+Y +F+K
Sbjct: 453 VIYTTFNIEFRK 464
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 60.1 bits (145), Expect = 8e-10
Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 27/197 (13%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+LGN V + + + +V + V +LAAAD +G+ A+ + +
Sbjct: 46 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT----------ISTGF 95
Query: 61 QMS-AGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWS 119
+ GC ++ + S+F+L I ++R AI + N ++ A I+ W
Sbjct: 96 CAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 155
Query: 120 FAILMAVLPLFGISD--------------YRKYATCLPFETTTGVWSLTYIVFLMFINGV 165
+ + + P+ G ++ CL + + + + F + V
Sbjct: 156 LSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL--V 213
Query: 166 AFLILMGCYLKMYCAIR 182
L+++G YL+++ A R
Sbjct: 214 PLLLMLGVYLRIFLAAR 230
Score = 47.0 bits (111), Expect = 1e-05
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 189 SNDSRIAKRMALLVFTDLLCWFPIALVA-LTAICGVHLVSLEQAKIFTVFVLPLNSCCNP 247
+ AK +A++V LCW P+ ++ T C + + + NS NP
Sbjct: 347 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 406
Query: 248 FLYAILTKQFKKDCVMI--CKTIEESRVTRGIGRCRHSSN 285
F+YA ++F++ I + + + H +
Sbjct: 407 FIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHHHHHHH 446
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 59.7 bits (144), Expect = 9e-10
Identities = 61/364 (16%), Positives = 123/364 (33%), Gaps = 19/364 (5%)
Query: 2 LGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQ 61
+GN V+ + R V + + +LA AD +G+ ++ TL Y W
Sbjct: 39 IGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGV-----FSMNLYTLYTVIGY---WP 90
Query: 62 MSAG-CQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
+ C + + + + SV L +I+ +R + +T + + + K AG ++ W
Sbjct: 91 LGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVL 150
Query: 121 AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAF----LILMGCYLK 176
+ ++ + T E +S + F I AF +I+ Y
Sbjct: 151 SFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAI--AAFYLPVIIMTVLYWH 208
Query: 177 MYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV 236
+ A + S+ RI + + L ++ D ++ I + L ++ ++++
Sbjct: 209 ISRASK-SRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS--PSLNAAKSELDKA 265
Query: 237 FVLPLNSCCNPFLYAILTKQFKKDCVM-ICKTIEESRVTRGIGRCRHSSNFSNRQTPGNT 295
N L Q V I + + V + R ++ + G T
Sbjct: 266 IGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGET 325
Query: 296 NSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRKNHR 355
+S + + L R P+R + T WD + +
Sbjct: 326 GVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKK 385
Query: 356 HIRT 359
RT
Sbjct: 386 VTRT 389
Score = 42.0 bits (98), Expect = 4e-04
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 182 RGSQAWNSNDSRIAKRMALLVFTDLLCWFP-IALVALTAICGVHLVSLEQAKIFTVFVLP 240
+ S + ++ + + ++ ++ W P +V + C + ++
Sbjct: 374 WDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI--PNTVWTIGYWLCY 431
Query: 241 LNSCCNPFLYAILTKQFKK 259
+NS NP YA+ FKK
Sbjct: 432 INSTINPACYALCNATFKK 450
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 52.8 bits (126), Expect = 2e-07
Identities = 42/362 (11%), Positives = 101/362 (27%), Gaps = 25/362 (6%)
Query: 2 LGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQ 61
N V++ + R V + +L+ AD +G V+ + L W
Sbjct: 24 GLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGA-----VVMPMNILYLLMSK---WS 75
Query: 62 MSAG-CQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
+ C M +++ S+F++ ++ ++R ++ + K + A ++ W
Sbjct: 76 LGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFL 135
Query: 121 AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAF----LILMGCYLK 176
+ L +P+ G + + + + E F + + F L+++ Y K
Sbjct: 136 SFLWV-IPILGWNHFMQQTSVRR-EDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAK 193
Query: 177 MYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV 236
+Y A+R + +L + L G+ + + +
Sbjct: 194 IYKAVR----------QHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAA 243
Query: 237 FVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTN 296
+ I + +K + + + S + R+
Sbjct: 244 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM 303
Query: 297 SIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRKNHRH 356
+ K E R + +R +
Sbjct: 304 VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYL 363
Query: 357 IR 358
Sbjct: 364 HM 365
Score = 40.1 bits (93), Expect = 0.002
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 189 SNDSRIAKRMALLVFTDLLCWFP-IALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNP 247
+ + + AK++ ++ +LCW P + A C E +FT+++ +NS NP
Sbjct: 366 NRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN--EHLHMFTIWLGYINSTLNP 423
Query: 248 FLYAILTKQFKK 259
+Y + + FKK
Sbjct: 424 LIYPLCNENFKK 435
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 52.0 bits (124), Expect = 3e-07
Identities = 62/373 (16%), Positives = 116/373 (31%), Gaps = 32/373 (8%)
Query: 1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
+ GN V+ + V + + +LA AD MGL AVV W
Sbjct: 55 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL-----AVVPFGAAHILMKM---W 106
Query: 61 QMSAG-CQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWS 119
C+ + VL S+ TL VI ++R +AIT L+ A I++ W
Sbjct: 107 TFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWI 166
Query: 120 FAILMAVLPLF----GISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAF----LILM 171
+ L + LP+ + + Y + + +F +I++
Sbjct: 167 VSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIV---SFYVPLVIMV 223
Query: 172 GCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQA 231
Y +++ + Q RI + + L ++ D I + S
Sbjct: 224 FVYSRVFQEAK-RQLNIFEMLRIDEGLRLKIYKDTEG------YYTIGIGHLLTKSPSLN 276
Query: 232 KIFTVFVLPLNSCCNPFL-----YAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNF 286
+ + N + + + I + + V + R ++
Sbjct: 277 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALI 336
Query: 287 SNRQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDC 346
+ G T +S + + L R P+R + T WD
Sbjct: 337 NMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA 396
Query: 347 LHLQRKNHRHIRT 359
K H+ ++T
Sbjct: 397 YKFCLKEHKALKT 409
Score = 37.8 bits (87), Expect = 0.009
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 180 AIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVA-LTAICGVHLVSLEQAKIFTVFV 238
+ + + + K + +++ T LCW P +V + I + E +
Sbjct: 392 GTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIG 450
Query: 239 LPLNSCCNPFLYAILTKQFKKDCVMI--CKTIEESRVTRGIGRCRHSSNFSNRQTPG 293
+NS NP +Y + F+ + + G +SSN + + G
Sbjct: 451 Y-VNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG-----YSSNGNTGEQSG 500
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 5e-07
Identities = 57/492 (11%), Positives = 128/492 (26%), Gaps = 135/492 (27%)
Query: 101 LNKRL-SLKHAGYIMVCGWSFAILMA-----VLPLFGISDYRKYATCLPFETTTGV-W-S 152
L + L L+ A +++ G + + L Y K + F + W +
Sbjct: 140 LRQALLELRPAKNVLIDG------VLGSGKTWVALDVCLSY-KVQCKMDF----KIFWLN 188
Query: 153 LTYI-----VFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRM--------- 198
L V M L + + + + R
Sbjct: 189 LKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 199 ALLVFTDLLCW-------FPIA---LV---------ALTAICGVHLVSLEQAKIFT---- 235
LLV ++ F ++ L+ L+A H+ + T
Sbjct: 246 CLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 236 --VFV---------LPLNSC-CNPFLYAILTKQFKKDCVMI--CKTIEESRVTRGIGRCR 281
+ + LP NP +I+ + + K + ++T I
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 282 HSSNFSNRQT--------PGNTN------SIVDRSSREHFPHPQPCSCNLKLLGERMSKP 327
+ + + P + + S++ + + L E+ K
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 328 RPHRPRWSATKKVRRFWDCLH-LQRKNHRHIRTDQYAYQIAEIQQKQHKRASSVCSSENF 386
+ + + + + ++ + + S++
Sbjct: 424 STIS---------------IPSIYLELKVKLENEYALHRSI-VDHYNIPKTF---DSDDL 464
Query: 387 SSSRSDSWKQNH--HHCGIPMRLLDPKRRASSWLVTRKTSQDSNLSSSRNDSSGSANTAS 444
D + +H HH L + R D + +A AS
Sbjct: 465 IPPYLDQYFYSHIGHH-------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 445 TSVSRISRSSNSSDRSKPRLTRQSAIVDDPDLPNSPARLTVRFLTTIPSAAETSVVNEEE 504
S+ + + + + +DP RL L +P E +++ +
Sbjct: 518 GSI--------LNTLQQLKFYKPYICDNDPK----YERLVNAILDFLPK-IEENLICSKY 564
Query: 505 S----FAILHPT 512
+ A++
Sbjct: 565 TDLLRIALMAED 576
Score = 37.5 bits (86), Expect = 0.014
Identities = 34/329 (10%), Positives = 84/329 (25%), Gaps = 100/329 (30%)
Query: 252 ILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVDRSSREHFPHPQ 311
+ F + CK +++ + I S + +D
Sbjct: 24 VFEDAFVDN--FDCKDVQDM--PKSI--------LSKEE--------ID----------- 52
Query: 312 PCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRKN--HRHIRT---DQYAYQI 366
++ R + L +++ + + Y + +
Sbjct: 53 ------HIIMS------KDA-----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 367 AEIQQKQHKRASSVCSSENFSSSRSDSWKQNH----HHCGIP---MRL------LDPKRR 413
+ I+ +Q + + + + R + N ++ ++L L P +
Sbjct: 96 SPIKTEQRQPSM---MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 414 AS---------SWLVTRKTSQDSNLSSSRND-----SSGSANTASTSVSRISRSSNSSDR 459
+W+ + + + + N+ + + +
Sbjct: 153 VLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPE---TVLEMLQKLLYQ 208
Query: 460 SKPRLTRQSAIVDDPDLPNSPARLTVRFLTTIPSAAETSVV-----NEE--ESFA----I 508
P T +S + L + +R L +V N + +F I
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 509 LHPTPDASPA--GSPQRKKKISLEEKQNS 535
L T S ISL+ +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMT 297
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.004
Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 51/126 (40%)
Query: 6 TVVFVLIFA--RSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS 63
T++ F +SK +P A F G S LGE+ +
Sbjct: 1737 TLMEKAAFEDLKSKGLIP--------ADATFAGH----------S-LGEY---------A 1768
Query: 64 AGCQMAGFMSVLSA-ELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAI 122
A +A MS+ S E+ VF R + A+ R L + Y M
Sbjct: 1769 ALASLADVMSIESLVEV-VF-------YRGMTMQVAV---PRDELGRSNYGM-------- 1809
Query: 123 LMAVLP 128
+A+ P
Sbjct: 1810 -IAINP 1814
Score = 36.6 bits (84), Expect = 0.026
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 28/125 (22%)
Query: 428 NLSSSR--NDSSGSANTA---STSV-SRISRSSNSSDRSKPRLTRQSAIVDDPDLPNSPA 481
+ S+R S GS T+ S+ ++ P T A DD P +PA
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA-ADDE--PTTPA 58
Query: 482 RLTVRFLTTIPSAAETS-----------VVNE-EESF-------AILHPTPDASPAGSPQ 522
L +FL + S E S + E E + A+ + +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 523 RKKKI 527
K+ I
Sbjct: 119 TKELI 123
Score = 36.6 bits (84), Expect = 0.026
Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 41/178 (23%)
Query: 372 KQHKRASSVCSSENFSS---SRSDSWK---QNHHHCGIPMRLLDPKRRASSWLVTRKTSQ 425
+ + + ++ S ++ + +DSW+ + + +L ++ R
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA---ITVL-------FFIGVR--CY 311
Query: 426 D----SNLSSS-RNDSSGSANTAST---SVSRISRSS-----NSSDRSKPRLTRQSAIVD 472
+ ++L S DS + + S+S +++ N ++ P +Q I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GKQVEIS- 369
Query: 473 DPDLPNSPARLTVRFLTTIPSAAETSVVNEEESFAILHPTPDASPAGSPQRKKKISLE 530
L N L V + P + + ++ A D S +RK K S
Sbjct: 370 ---LVNGAKNLVV---SGPPQSLYGLNLTLRKAKA--PSGLDQSRIPFSERKLKFSNR 419
Score = 34.3 bits (78), Expect = 0.12
Identities = 48/313 (15%), Positives = 88/313 (28%), Gaps = 103/313 (32%)
Query: 43 AVVDASTLGEFRMYAI----------------PWQMSAGCQMAGFMSVLSAELSVFTLAV 86
A+ A G ++ AI +Q + + + LS L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLS--ELIR 200
Query: 87 ITLERNYAITHAMHLNKRLSLKHA----GYIMVCGWSFAILMAVLPLFGISDYRKYA-TC 141
TL+ T +++ + L Y++ S PL G+ Y T
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-------PLIGVIQLAHYVVTA 253
Query: 142 LPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCA--IRGSQAWNSNDSRIAKRMA 199
G T ++ G G + A I + +W S + K +
Sbjct: 254 ----KLLG---FTPGELRSYLKGAT-----GHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 200 LLVFTDLLCW--FPIALVALT-----------------AICGVHLVSLEQA--------- 231
+L F + C+ +P + + +I + ++
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 232 ---KIF-------TVFVL--PLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGR 279
++ V+ P S LY L +K +++SR+
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQS-----LYG-LNLTLRK--AKAPSGLDQSRI------ 407
Query: 280 CRHSS---NFSNR 289
S FSNR
Sbjct: 408 -PFSERKLKFSNR 419
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane
protein; NMR {Synthetic}
Length = 33
Score = 27.7 bits (61), Expect = 0.90
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 191 DSRIAKRMALLVFTDLLCWFPI 212
D R+AK + L++ L+CWFP+
Sbjct: 1 DVRLAKTLGLVLAVLLICWFPV 22
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.94
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 502 EEESFAILHPT-----PDASPA 518
E+++ L + D++PA
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 29.3 bits (65), Expect = 2.2
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 404 PMRLLDPKRRASSWLVTRKTSQDSNLSSSRNDSSGSANTASTSVSRISRSSNSSDRSKPR 463
P + + V TS S S + S ++ AS+ SR SR+ ++ S P
Sbjct: 111 PSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSGPS 170
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 28.3 bits (63), Expect = 5.5
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 106 SLKHAGYIM--VCGWSFAILMAVLPLFGISDYRKYATCLPFETTTG 149
SL+ G + G++ ++ V + Y+ P + G
Sbjct: 114 SLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAG 159
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 27.9 bits (63), Expect = 6.8
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 105 LSLKHAGYIMVC-GWSFAILMAVLPLFGIS 133
+ + +C GW A+ +L +S
Sbjct: 36 TTGLSGDWYKLCLGWGLAVFFGILVSAKLS 65
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_O
Length = 121
Score = 26.8 bits (59), Expect = 9.8
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 419 VTRKTSQDSNLSSSRNDSSGSANTASTSVSRISRSSNSSDRSKPRLTRQSAIVDDPDLPN 478
+ R+T N + N SVSRI+R+ + + + DD +
Sbjct: 16 LARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFE 75
Query: 479 SPARLTVRFLTTIPSAAE 496
P + TV L A
Sbjct: 76 FP-KTTVAALRFTAGARA 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.409
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,846,581
Number of extensions: 444663
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 39
Length of query: 537
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 439
Effective length of database: 3,965,535
Effective search space: 1740869865
Effective search space used: 1740869865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.3 bits)