BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6684
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y0S|A Chain A, Crystal Structure Of Ppar Delta Complexed With Gw2331
pdb|1Y0S|B Chain B, Crystal Structure Of Ppar Delta Complexed With Gw2331
Length = 272
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 51 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 86
>pdb|2GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2BAW|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2BAW|B Chain B, Human Nuclear Receptor-Ligand Complex 1
pdb|3D5F|A Chain A, Crystal Structure Of Ppar-Delta Complex
pdb|3D5F|B Chain B, Crystal Structure Of Ppar-Delta Complex
Length = 267
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 46 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 81
>pdb|1GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|1GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|3GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3DY6|A Chain A, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3DY6|B Chain B, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3PEQ|A Chain A, Ppard Complexed With A Phenoxyacetic Acid Partial
Agonist
pdb|3PEQ|B Chain B, Ppard Complexed With A Phenoxyacetic Acid Partial
Agonist
Length = 271
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 50 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 85
>pdb|3TKM|A Chain A, Crystal Structure Ppar Delta Binding Gw0742
Length = 275
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 54 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 89
>pdb|3SP9|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
pdb|3SP9|B Chain B, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 281
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 60 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 95
>pdb|2XYJ|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYJ|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
Length = 288
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 67 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 102
>pdb|3GZ9|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Delta (Ppard) In Complex With A Full Agonist
Length = 269
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 50 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 85
>pdb|2ZNP|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNP|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNQ|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
pdb|2ZNQ|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
Length = 276
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 55 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 90
>pdb|3ET2|A Chain A, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET2|B Chain B, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 287
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 66 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 101
>pdb|2Q5G|A Chain A, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
pdb|2Q5G|B Chain B, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
Length = 283
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 62 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 97
>pdb|2J14|A Chain A, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|2J14|B Chain B, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|3OZ0|A Chain A, Ppar Delta In Complex With Azppard02
Length = 285
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 64 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 99
>pdb|2B50|A Chain A, Human Nuclear Receptor-Ligand Complex 2
pdb|2B50|B Chain B, Human Nuclear Receptor-Ligand Complex 2
Length = 272
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 52 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 87
>pdb|2AWH|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2AWH|B Chain B, Human Nuclear Receptor-Ligand Complex 1
Length = 268
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 16 WDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTD 52
W ++ + Q + + Y +H FYRCQ C T +
Sbjct: 47 WQAEKGLVWKQLVNGLPPYKEISVHVFYRCQ-CTTVE 82
>pdb|1SP3|A Chain A, Crystal Structure Of Octaheme Cytochrome C From Shewanella
Oneidensis
Length = 443
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 43 YRCQTCHTTDRNAICVNCIKSCHAGHD 69
++CQ CHTT+++ I N + G D
Sbjct: 179 FQCQNCHTTEKHQISGNAMGVSPGGID 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.135 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,860,564
Number of Sequences: 62578
Number of extensions: 52786
Number of successful extensions: 186
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 18
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)