BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6684
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3
Length = 927
Score = 120 bits (300), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/60 (81%), Positives = 55/60 (91%)
Query: 18 VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
+++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FIRHDR
Sbjct: 826 IEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDR 885
>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1
Length = 843
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/60 (81%), Positives = 55/60 (91%)
Query: 18 VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
+++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FIRHDR
Sbjct: 742 IEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDR 801
>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2
Length = 843
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/60 (81%), Positives = 55/60 (91%)
Query: 18 VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
+++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FIRHDR
Sbjct: 742 IEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDR 801
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 2 YLLEGKKELYLKENW----DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAIC 57
YL E +K + EN D +R ++S C Y + H +Y C TC C
Sbjct: 2015 YLSEDEKVVNGNENTGEEDDEERKLSSKVCTYTFTKNDYIDQH-WYFCYTCGLKFSEGCC 2073
Query: 58 VNCIKSCHAGHDVAFIRHDR 77
C+K CH GH V++ R+ R
Sbjct: 2074 SVCVKVCHKGHQVSYSRYSR 2093
>sp|B9G2A8|BIG_ORYSJ Auxin transport protein BIG OS=Oryza sativa subsp. japonica
GN=Os09g0247700 PE=2 SV=1
Length = 4965
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 13 KENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAF 72
+E+ + +RA+ + C + SS ++F +Y C TC T C C K CH GH V +
Sbjct: 1419 EEDGNSERALATKVCTFT-SSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHQGHRVVY 1477
Query: 73 IRHDR 77
R R
Sbjct: 1478 SRSSR 1482
>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2
Length = 5098
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 13 KENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAF 72
+E+ + +R + S C + SS ++F +Y C TC T C C K CH GH V +
Sbjct: 1561 EEDANSERYLASKVCTFT-SSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVY 1619
Query: 73 IRHDR 77
R R
Sbjct: 1620 SRSSR 1624
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 37 FPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH 75
F +Y C TC+ + +C C + CH GHDV++ ++
Sbjct: 1805 FMNQHWYHCHTCNMINTVGVCSVCARVCHKGHDVSYAKY 1843
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 37 FPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH 75
F +Y C TC+ + +C C + CH GHDV++ ++
Sbjct: 1826 FMNQHWYHCHTCNMINTVGVCSVCARVCHKGHDVSYAKY 1864
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 27 CLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH 75
C + I+ H +Y C TC D +C C K CH H++++ ++
Sbjct: 1661 CTFTITQKEFMNQH-WYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKY 1708
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 27 CLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH 75
C + I+ H +Y C TC D +C C K CH H++++ ++
Sbjct: 1663 CTFTITQKEFMNQH-WYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKY 1710
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 27 CLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH 75
C + I+ H +Y C TC D +C C K CH H++++ ++
Sbjct: 1662 CTFTITQKEFMNQH-WYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKY 1709
>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus GN=Ubr5 PE=1
SV=3
Length = 2788
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIR 74
D + C+TC + C C + CH GHD R
Sbjct: 1180 QDIFECRTCGLLESLCCCTECARVCHKGHDCKLKR 1214
>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2
Length = 2792
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIR 74
D + C+TC + C C + CH GHD R
Sbjct: 1185 QDIFECRTCGLLESLCCCTECARVCHKGHDCKLKR 1219
>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2
Length = 2799
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIR 74
D + C+TC + C C + CH GHD R
Sbjct: 1191 QDIFECRTCGLLESLCCCTECARVCHKGHDCKLKR 1225
>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd
PE=1 SV=3
Length = 2885
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIR 74
+ + C+TC T C C + CH GHD R
Sbjct: 1231 QNIFECKTCGLTGSLCCCTECARVCHKGHDCKLKR 1265
>sp|O60152|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubr1 PE=3 SV=1
Length = 1958
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 42 FYRCQTCHTTDRNAICVNCIK-SCHAGHDVAF 72
FYRC+TC +A+CV C + + H H+ +F
Sbjct: 106 FYRCKTCSVDSNSALCVKCFRATSHKDHETSF 137
>sp|P49717|MCM4_MOUSE DNA replication licensing factor MCM4 OS=Mus musculus GN=Mcm4 PE=2
SV=1
Length = 862
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 17 DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTC-HTT----DRNAICVNC-IKSCHAGHDV 70
D+ + +T + + S F++CQ C HTT DR I C CH H +
Sbjct: 277 DIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHTTRVEIDRGRIAEPCSCVHCHTTHSM 336
Query: 71 AFIRHDR 77
A I H+R
Sbjct: 337 ALI-HNR 342
>sp|O60014|UBR1_KLULA E3 ubiquitin-protein ligase UBR1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=UBR1 PE=3 SV=2
Length = 1945
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 43 YRCQTCHTTDRNAICVNCIK-SCHAGHDV 70
YRC+ C D +CVNC H GH V
Sbjct: 122 YRCKECSFDDTCVLCVNCFNPKDHVGHHV 150
>sp|Q09329|MLO2_SCHPO Protein mlo2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=mlo2 PE=2 SV=1
Length = 329
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 42 FYRCQTCH--TTDRNAICVNCIKSCHAGHDVAFIRHDR 77
Y C TC + NA+C +C SCHA HD+ + + R
Sbjct: 46 LYACLTCQKASGSLNAVCYSCSISCHADHDLVDLFNKR 83
>sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2
Length = 1888
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 43 YRCQTCHTTDRNAICVNCI-KSCHAGHDVAFIR 74
YRC+TC + ++C C + H GHD R
Sbjct: 131 YRCRTCGISPCMSLCAECFHQGDHTGHDFNMFR 163
>sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3
Length = 1889
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 43 YRCQTCHTTDRNAICVNCI-KSCHAGHDVAFIR 74
YRC+TC + ++C C + H GHD R
Sbjct: 131 YRCRTCGISPCMSLCAECFHQGDHTGHDFNMFR 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.137 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,060,091
Number of Sequences: 539616
Number of extensions: 870569
Number of successful extensions: 2673
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2645
Number of HSP's gapped (non-prelim): 39
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)