Query psy6684
Match_columns 77
No_of_seqs 80 out of 82
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 00:26:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 96.5 0.0021 7.3E-08 40.0 3.1 36 39-74 14-50 (75)
2 3nis_A E3 ubiquitin-protein li 96.4 0.0023 7.8E-08 40.6 3.1 46 25-75 9-55 (82)
3 2yvr_A Transcription intermedi 94.3 0.026 8.8E-07 30.9 2.2 29 41-73 17-45 (50)
4 3ddt_A E3 ubiquitin-protein li 93.5 0.055 1.9E-06 29.5 2.6 27 43-73 19-46 (48)
5 2did_A Tripartite motif protei 92.8 0.087 3E-06 29.1 2.7 32 39-74 16-48 (53)
6 2d8u_A Ubiquitin ligase TRIM63 92.7 0.033 1.1E-06 31.6 0.9 28 42-73 20-48 (64)
7 2csv_A Tripartite motif protei 92.3 0.1 3.5E-06 30.5 2.7 30 40-73 27-56 (72)
8 2dja_A Midline-2; tripartite m 91.7 0.061 2.1E-06 32.0 1.3 29 41-73 29-58 (84)
9 2yrg_A Tripartite motif-contai 90.5 0.21 7.1E-06 28.5 2.7 31 40-74 23-54 (59)
10 2egm_A Tripartite motif-contai 88.2 0.21 7.3E-06 28.4 1.6 29 40-72 27-56 (57)
11 2jun_A Midline-1; B-BOX, TRIM, 85.5 0.32 1.1E-05 29.4 1.4 29 41-73 70-99 (101)
12 1fre_A Nuclear factor XNF7; zi 85.4 0.11 3.6E-06 27.4 -0.8 26 42-71 14-40 (42)
13 1twf_L ABC10-alpha, DNA-direct 49.6 4.8 0.00016 24.4 0.6 31 39-75 25-60 (70)
14 2crw_A ARF GAP 3, ADP-ribosyla 30.9 16 0.00053 25.0 0.9 30 44-74 31-70 (149)
15 3c5k_A HD6, histone deacetylas 30.4 20 0.00067 23.0 1.3 20 44-63 26-45 (109)
16 3sub_A ADP-ribosylation factor 28.5 19 0.00065 25.2 1.0 31 44-75 24-64 (163)
17 1x4s_A Protein FON, zinc finge 28.1 7.2 0.00025 23.3 -1.1 21 41-68 25-45 (59)
18 1dxg_A Desulforedoxin; non-hem 26.1 23 0.00077 18.4 0.8 12 39-50 3-14 (36)
19 2ds5_A CLPX, ATP-dependent CLP 24.9 31 0.001 19.7 1.3 12 54-65 33-44 (51)
20 2lcq_A Putative toxin VAPC6; P 22.7 47 0.0016 21.5 2.1 20 41-60 131-154 (165)
21 3h0g_L DNA-directed RNA polyme 22.0 22 0.00075 21.3 0.3 29 41-75 20-53 (63)
22 1ovx_A ATP-dependent CLP prote 21.9 37 0.0013 20.6 1.3 12 54-65 40-51 (67)
23 2g45_A Ubiquitin carboxyl-term 20.8 39 0.0013 22.2 1.3 20 44-63 36-55 (129)
24 3pwf_A Rubrerythrin; non heme 20.4 50 0.0017 22.3 1.8 27 34-60 130-159 (170)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=96.47 E-value=0.0021 Score=40.03 Aligned_cols=36 Identities=19% Similarity=0.552 Sum_probs=31.8
Q ss_pred eeceEEeecCCCCCCeeeehhhHHh-hcCCCceEEee
Q psy6684 39 MHDFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFIR 74 (77)
Q Consensus 39 ~Q~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~r 74 (77)
....|+|.||.+.+.-.+|..|-+. =|+||++...+
T Consensus 14 ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~ 50 (75)
T 3ny3_A 14 GEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTT 50 (75)
T ss_dssp TCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEE
T ss_pred CCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEE
Confidence 4568999999999988999999876 79999998875
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=96.41 E-value=0.0023 Score=40.60 Aligned_cols=46 Identities=26% Similarity=0.584 Sum_probs=36.1
Q ss_pred CcceEEeecCcccceeceEEeecCCCCCCeeeehhhHHh-hcCCCceEEeee
Q psy6684 25 GQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFIRH 75 (77)
Q Consensus 25 ~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~r~ 75 (77)
+.|...+. . ....|+|.||.+.+.-.+|..|-+. =|+||++.+...
T Consensus 9 ~~Cg~vf~-~----ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s 55 (82)
T 3nis_A 9 RNCGRKFK-I----GEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDIC 55 (82)
T ss_dssp SCCCCBCC-T----TCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEEC
T ss_pred CCCCCccc-C----CCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEe
Confidence 45666642 2 3568999999999888999999765 399999998765
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=94.30 E-value=0.026 Score=30.92 Aligned_cols=29 Identities=28% Similarity=0.712 Sum_probs=25.0
Q ss_pred ceEEeecCCCCCCeeeehhhHHhhcCCCceEEe
Q psy6684 41 DFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73 (77)
Q Consensus 41 ~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~ 73 (77)
--|.|.+|.. .||..|...=|+||++..+
T Consensus 17 l~lfC~~~~~----~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 17 LVLFCESCDT----LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp CCEEETTTTE----EECHHHHHTTTTTCCEEET
T ss_pred EEEEeCCCCE----EEecccCCCcCCCCceecH
Confidence 3578999876 8999999999999999765
No 4
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=93.55 E-value=0.055 Score=29.47 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=22.3
Q ss_pred EEeecCCCCCCeeeehhhHH-hhcCCCceEEe
Q psy6684 43 YRCQTCHTTDRNAICVNCIK-SCHAGHDVAFI 73 (77)
Q Consensus 43 Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~ 73 (77)
+.|.+|.. .||..|.. -=|+||++..+
T Consensus 19 lfC~~d~~----~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 19 IYCLTCEV----PTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp EEETTTTE----EECHHHHHHSTTTTSCEEEC
T ss_pred EEcCCCCe----eEcccccCCCcCCCCcEEeC
Confidence 67988865 99999984 48999998764
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=92.80 E-value=0.087 Score=29.13 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.1
Q ss_pred eeceEEeecCCCCCCeeeehhhHH-hhcCCCceEEee
Q psy6684 39 MHDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFIR 74 (77)
Q Consensus 39 ~Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~r 74 (77)
..--|.|.+|.. .||..|.. .=|+||++..+.
T Consensus 16 e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 16 EALSLFCYEDQE----AVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CBCCEEESSSCS----EECHHHHTSSTTTTSCEEECC
T ss_pred CeeeEEeCCCCe----EEeccccCCCCCCCCcEeeHH
Confidence 344578998877 89999998 799999998754
No 6
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.68 E-value=0.033 Score=31.62 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=23.7
Q ss_pred eEEeecCCCCCCeeeehhhHHh-hcCCCceEEe
Q psy6684 42 FYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFI 73 (77)
Q Consensus 42 ~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~ 73 (77)
-|.|.+|.. .||..|... =|+||++..+
T Consensus 20 ~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l 48 (64)
T 2d8u_A 20 NIYCLTCEV----PTCSMCKVFGIHKACEVAPL 48 (64)
T ss_dssp CSEESSSCC----CCCSHHHHSSSTTSSCEECT
T ss_pred ceEcCcCCc----eeCccccCCCcCCCCCeeCH
Confidence 467999887 899999975 9999999764
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.34 E-value=0.1 Score=30.50 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=25.4
Q ss_pred eceEEeecCCCCCCeeeehhhHHhhcCCCceEEe
Q psy6684 40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73 (77)
Q Consensus 40 Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~ 73 (77)
.--|.|.+|.. .||..|...=|+||++..+
T Consensus 27 ~l~lfC~~d~~----~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 27 TMELFCQTDQT----CICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCCEEESSSCC----EECHHHHHTTTSSSCEEEH
T ss_pred ceEEEeCCCCe----EEccccCCCCCCCCCEecH
Confidence 34578999887 8999999999999998764
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=91.73 E-value=0.061 Score=32.00 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.6
Q ss_pred ceEEeecCCCCCCeeeehhhHH-hhcCCCceEEe
Q psy6684 41 DFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFI 73 (77)
Q Consensus 41 ~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~ 73 (77)
--|.|.+|.. .||..|.. .=|+||++..+
T Consensus 29 l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 29 VNMYCVSDDQ----LICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCEEETTTTE----EECHHHHHTSTTTTCCBCCC
T ss_pred ccEEcCCCCc----eEcccCcCCCCCCCCCccCH
Confidence 4578998886 89999998 79999998764
No 9
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.48 E-value=0.21 Score=28.53 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=25.4
Q ss_pred eceEEeecCCCCCCeeeehhhHH-hhcCCCceEEee
Q psy6684 40 HDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFIR 74 (77)
Q Consensus 40 Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~r 74 (77)
.--+.|.++.. .||..|.. .=|+||++..+.
T Consensus 23 ~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 23 KLLLFCQEDGK----VICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp BCCEEETTTCS----EECHHHHTSTTTTTCCEEECC
T ss_pred eeeeecCCCCc----EEecccCCCCcCCCCcEeeHH
Confidence 34577988776 89999998 799999998754
No 10
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.22 E-value=0.21 Score=28.39 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=23.3
Q ss_pred eceEEeecCCCCCCeeeehhhHH-hhcCCCceEE
Q psy6684 40 HDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAF 72 (77)
Q Consensus 40 Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y 72 (77)
.--|.|.+|.. .||..|.. .=|+||++..
T Consensus 27 ~L~lfC~~d~~----~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 27 ALKLFCEVDEE----AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCCEEETTTTE----EECHHHHHSHHHHSSCEEC
T ss_pred eeeEEcCCCCc----EEecccCCCCCCCCCcEec
Confidence 34567887765 99999998 7999999863
No 11
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=85.49 E-value=0.32 Score=29.36 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=23.9
Q ss_pred ceEEeecCCCCCCeeeehhhHH-hhcCCCceEEe
Q psy6684 41 DFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFI 73 (77)
Q Consensus 41 ~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~ 73 (77)
--|.|.+|.. .||..|.. .=|+||++..+
T Consensus 70 l~~fC~~~~~----~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 70 VNMYCVTDDQ----LICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CCEEETTTTE----EECHHHHHHTTTSSSCBCCC
T ss_pred ceEECCCCCC----ccchhcCCCCCcCCCCeecC
Confidence 4578998865 99999997 69999998754
No 12
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=85.40 E-value=0.11 Score=27.41 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.1
Q ss_pred eEEeecCCCCCCeeeehhhHH-hhcCCCceE
Q psy6684 42 FYRCQTCHTTDRNAICVNCIK-SCHAGHDVA 71 (77)
Q Consensus 42 ~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~ 71 (77)
-+.|.++.. .||..|.. -=|+||++.
T Consensus 14 ~lfC~~d~~----~iC~~C~~~~~H~~H~~~ 40 (42)
T 1fre_A 14 KLYCKDDGT----LSCVICRDSLKHASHNFL 40 (42)
T ss_dssp CCCCCSSSS----SSCCTTSSCSSCTTCCCC
T ss_pred eEEeCCCCe----EEeccCCCCCCCCCCcEe
Confidence 456777665 89999998 789999875
No 13
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=49.62 E-value=4.8 Score=24.41 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=23.0
Q ss_pred eeceEEeecCCCC-----CCeeeehhhHHhhcCCCceEEeee
Q psy6684 39 MHDFYRCQTCHTT-----DRNAICVNCIKSCHAGHDVAFIRH 75 (77)
Q Consensus 39 ~Q~~Y~C~TC~~~-----d~~giC~~Ca~~CH~GHdv~y~r~ 75 (77)
.+-.|.|..|+.. ...--|..| ||.|.|.+.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~C------G~RILyK~R 60 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDC------GHRILLKAR 60 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSS------CCCCCBCCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCC------CceEeEecC
Confidence 4678999999987 233457777 888888654
No 14
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.86 E-value=16 Score=24.97 Aligned_cols=30 Identities=33% Similarity=0.821 Sum_probs=20.5
Q ss_pred EeecCCCCCC--------eeeehhhHHhhcC--CCceEEee
Q psy6684 44 RCQTCHTTDR--------NAICVNCIKSCHA--GHDVAFIR 74 (77)
Q Consensus 44 ~C~TC~~~d~--------~giC~~Ca~~CH~--GHdv~y~r 74 (77)
.|-+|+..+- .-||..|+-+ |+ |..++++|
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~Csgi-HR~LG~hiS~Vr 70 (149)
T 2crw_A 31 VCFDCGAKNPSWASITYGVFLCIDCSGS-HRSLGVHLSFIR 70 (149)
T ss_dssp BCSSSCCBSCCCEETTTTEECCHHHHHH-HHHHCTTTCCEE
T ss_pred cCCCCcCCCCCcEEeccCEEEchhcchh-hccCCCCCCeee
Confidence 4777776653 4588899887 66 55566665
No 15
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=30.42 E-value=20 Score=22.96 Aligned_cols=20 Identities=30% Similarity=0.861 Sum_probs=14.6
Q ss_pred EeecCCCCCCeeeehhhHHh
Q psy6684 44 RCQTCHTTDRNAICVNCIKS 63 (77)
Q Consensus 44 ~C~TC~~~d~~giC~~Ca~~ 63 (77)
.|..|...++.|+|-.|-.+
T Consensus 26 ~C~~C~~~~~~W~CL~CG~v 45 (109)
T 3c5k_A 26 PCGDCGTIQENWVCLSCYQV 45 (109)
T ss_dssp CCTTTCCCSSEEEETTTCCE
T ss_pred cCccccCCCCeeeeeecCcc
Confidence 57778877777888777544
No 16
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=28.53 E-value=19 Score=25.19 Aligned_cols=31 Identities=26% Similarity=0.761 Sum_probs=20.6
Q ss_pred EeecCCCCCC--------eeeehhhHHhhcC--CCceEEeee
Q psy6684 44 RCQTCHTTDR--------NAICVNCIKSCHA--GHDVAFIRH 75 (77)
Q Consensus 44 ~C~TC~~~d~--------~giC~~Ca~~CH~--GHdv~y~r~ 75 (77)
.|-+|+..+- .-+|..|+-+ |+ |..++.+|.
T Consensus 24 ~CaDCga~~P~WaS~nlGvflCi~CSGi-HR~LG~hISkVKS 64 (163)
T 3sub_A 24 KCFDCGISNPDWVSVNHGIFLCINCSGV-HRSLGVHISIVRS 64 (163)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHH-HHHTCTTTCCEEE
T ss_pred ccccCCCCCCCeEEecCCeeEHHhhhHH-hcCCCCCCCeeee
Confidence 4777777653 4588899865 66 556666653
No 17
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.09 E-value=7.2 Score=23.30 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=13.6
Q ss_pred ceEEeecCCCCCCeeeehhhHHhhcCCC
Q psy6684 41 DFYRCQTCHTTDRNAICVNCIKSCHAGH 68 (77)
Q Consensus 41 ~~Y~C~TC~~~d~~giC~~Ca~~CH~GH 68 (77)
--|.|..|++ ..|...|-+.|
T Consensus 25 akY~CPrC~~-------rYCSl~C~k~H 45 (59)
T 1x4s_A 25 ARYTCPRCNA-------PYCSLRCYRTH 45 (59)
T ss_dssp ECEECTTTCC-------EESSHHHHHHH
T ss_pred ccccCcCCCC-------CccChHHHHHH
Confidence 4699999998 34444554444
No 18
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=26.06 E-value=23 Score=18.42 Aligned_cols=12 Identities=33% Similarity=0.941 Sum_probs=9.6
Q ss_pred eeceEEeecCCC
Q psy6684 39 MHDFYRCQTCHT 50 (77)
Q Consensus 39 ~Q~~Y~C~TC~~ 50 (77)
...||+|..|+-
T Consensus 3 ~~~fY~C~~CGn 14 (36)
T 1dxg_A 3 EGDVYKCELCGQ 14 (36)
T ss_dssp TTCEEECTTTCC
T ss_pred cccEEEcCCCCc
Confidence 367999999954
No 19
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=24.93 E-value=31 Score=19.66 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.5
Q ss_pred eeeehhhHHhhc
Q psy6684 54 NAICVNCIKSCH 65 (77)
Q Consensus 54 ~giC~~Ca~~CH 65 (77)
..||..|+..|+
T Consensus 33 v~IC~eCi~~~~ 44 (51)
T 2ds5_A 33 VYICDECVDLCN 44 (51)
T ss_dssp CEEEHHHHHHHH
T ss_pred CEehHHHHHHHH
Confidence 469999999986
No 20
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.73 E-value=47 Score=21.52 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=14.9
Q ss_pred ceEEeecCCCCCC----eeeehhh
Q psy6684 41 DFYRCQTCHTTDR----NAICVNC 60 (77)
Q Consensus 41 ~~Y~C~TC~~~d~----~giC~~C 60 (77)
.-|+|..|+-.-. ...|..|
T Consensus 131 ~~y~C~~Cg~~~~~~~~~~~Cp~C 154 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTLPPGGVCPDC 154 (165)
T ss_dssp CCEEESSSCCEESSCCGGGBCTTT
T ss_pred EEEECCCCCCcccCCCCCCcCCCC
Confidence 4699999996543 2478888
No 21
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.03 E-value=22 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.692 Sum_probs=21.8
Q ss_pred ceEEeecCCCCCCe-----eeehhhHHhhcCCCceEEeee
Q psy6684 41 DFYRCQTCHTTDRN-----AICVNCIKSCHAGHDVAFIRH 75 (77)
Q Consensus 41 ~~Y~C~TC~~~d~~-----giC~~Ca~~CH~GHdv~y~r~ 75 (77)
-.|.|-.|+..... --|..| ||.|.|.+.
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~C------G~RILyK~R 53 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCREC------GHRVMYKMR 53 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSS------CCCCCBCCC
T ss_pred eEEECCCCCCeeecCCCCceECCCC------CcEEEEEec
Confidence 56999999986543 557777 899888754
No 22
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=21.91 E-value=37 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.4
Q ss_pred eeeehhhHHhhc
Q psy6684 54 NAICVNCIKSCH 65 (77)
Q Consensus 54 ~giC~~Ca~~CH 65 (77)
..||..|+..|+
T Consensus 40 vyICdeCI~~c~ 51 (67)
T 1ovx_A 40 VYICDECVDLCN 51 (67)
T ss_dssp CEEEHHHHHHHH
T ss_pred CChhHHHHHHHH
Confidence 469999999986
No 23
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=20.84 E-value=39 Score=22.24 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=17.6
Q ss_pred EeecCCCCCCeeeehhhHHh
Q psy6684 44 RCQTCHTTDRNAICVNCIKS 63 (77)
Q Consensus 44 ~C~TC~~~d~~giC~~Ca~~ 63 (77)
.|..|...+.+|+|-.|-.+
T Consensus 36 ~C~~C~~~~~LwlCL~CG~v 55 (129)
T 2g45_A 36 KCSKCDMRENLWLNLTDGSI 55 (129)
T ss_dssp CCSSSSCCSSEEEETTTCCE
T ss_pred cCccccCcCceEEeccCCcc
Confidence 79999999999999999754
No 24
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.36 E-value=50 Score=22.30 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=19.1
Q ss_pred CcccceeceEEeecCCCCCC---eeeehhh
Q psy6684 34 YTSFPMHDFYRCQTCHTTDR---NAICVNC 60 (77)
Q Consensus 34 ~~~f~~Q~~Y~C~TC~~~d~---~giC~~C 60 (77)
+..|.....|.|..||.+-. ..+|..|
T Consensus 130 ~~~~~~~~~~~C~~CG~i~~~~~p~~CP~C 159 (170)
T 3pwf_A 130 GEDIEIKKVYICPICGYTAVDEAPEYCPVC 159 (170)
T ss_dssp TCCCCCSCEEECTTTCCEEESCCCSBCTTT
T ss_pred CCcCCCCCeeEeCCCCCeeCCCCCCCCCCC
Confidence 34565668899999998632 2478887
Done!