RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6684
(77 letters)
>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box).
This region is found in E3 ubiquitin ligases that
recognise N-recognins.
Length = 71
Score = 43.9 bits (104), Expect = 1e-07
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 30 KISSYTSFPMHDFYRCQTCHTTDRNAICVNC-IKSCHAGHDVAFIRHDR 77
+ Y YRC TC IC C SCH GHDV + R
Sbjct: 1 SVCGYVFKSGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKR 49
>gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a
recognition component of the N-end rule pathway.
Domain is involved in recognition of N-end rule
substrates in yeast Ubr1p.
Length = 71
Score = 36.3 bits (84), Expect = 1e-04
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 30 KISSYTSFPMHDFYRCQTCHTTDRNAICVNC-IKSCHAGHDVAF 72
+ Y YRC+TC +C +C SCH GHDV+
Sbjct: 1 DVCGYKFTGGEVIYRCKTCGLDPTCVLCSDCFRPSCHKGHDVSL 44
>gnl|CDD|180607 PRK06526, PRK06526, transposase; Provisional.
Length = 254
Score = 26.4 bits (58), Expect = 1.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 61 IKSCHAGHDVAF 72
I++C AGH V F
Sbjct: 120 IRACQAGHRVLF 131
>gnl|CDD|152060 pfam11624, M157, MHC class I-like protein M157. This family of
proteins represents M157,a divergent form of MHC class
I-like proteins which is the protein product of the
mouse cytomegalovirus. This protein is unique in its
ability to engage both activating (Ly49H) and
inhibitory (Ly49I) natural killer cell receptors. M157
is involved in intra- and intermolecular interacts
within and between its domains to form a compact
MHC-like molecule.
Length = 256
Score = 26.0 bits (57), Expect = 1.8
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 14/54 (25%)
Query: 1 MYLLEGKKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRN 54
MYL +EL WD QR CL S C HTTDR
Sbjct: 53 MYLQTLVQEL-----WDTQRICVRYTCLLLKSDVV---------CDVYHTTDRV 92
>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional.
Length = 244
Score = 26.2 bits (58), Expect = 1.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 65 HAGHDVAFIRH 75
HAGHD AF+RH
Sbjct: 148 HAGHDKAFLRH 158
>gnl|CDD|226005 COG3474, COG3474, Cytochrome c2 [Energy production and
conversion].
Length = 135
Score = 25.8 bits (57), Expect = 1.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 42 FYRCQTCHTTDRNA 55
F +CQ CH+ ++
Sbjct: 38 FKKCQACHSIEKGG 51
>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger.
Length = 42
Score = 24.2 bits (53), Expect = 2.9
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 51 TDRNAICVNCIKSCHAGHDVAFI 73
+C C ++ H GH V +
Sbjct: 20 ECGALLCRTCDEAEHRGHTVVLL 42
>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger.
Length = 42
Score = 24.0 bits (52), Expect = 3.8
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 43 YRCQTCHTTDRNAICVNCIKSCHAGHDV 70
C+ C +C C S H GH V
Sbjct: 16 LYCEDCQQ----LLCEECALSGHKGHTV 39
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 24.6 bits (54), Expect = 5.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 62 KSCHAGHDVAFIR 74
S H+GH VA I+
Sbjct: 263 TSVHSGHYVAHIK 275
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type. Zinc finger present
in dystrophin and dystrobrevin. The ZZ motif
coordinates two zinc ions and most likely participates
in ligand binding or molecular scaffolding. Dystrophin
attaches actin filaments to an integral membrane
glycoprotein complex in muscle cells. The ZZ domain in
dystrophin has been shown to be essential for binding
to the membrane protein beta-dystroglycan.
Length = 49
Score = 23.5 bits (51), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 36 SFPMHDF-YRCQTCHTTDRNAICVNC 60
FP+ F YRC C D +C +C
Sbjct: 8 EFPITGFRYRCLKCFNYD---LCQSC 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.137 0.461
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,599,858
Number of extensions: 241082
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 21
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)