RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6684
         (77 letters)



>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c
           {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 240

 Score = 26.1 bits (57), Expect = 0.40
 Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 6/31 (19%)

Query: 45  CQTCHTTDRNAICV-----NCIKSCHAGHDV 70
           C  CH T  N         +C   CH+G   
Sbjct: 202 CGECHMTKGNDANWAKGIMDC-TPCHSGTAA 231


>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 24.4 bits (53), Expect = 0.77
 Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)

Query: 45 CQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
          CQT  T     IC  C+   H  H    +
Sbjct: 25 CQTDQT----CICYLCMFQEHKNHSTVTV 49


>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
          [TaxId: 1076]}
          Length = 114

 Score = 23.6 bits (50), Expect = 2.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 42 FYRCQTCHTTDRNAI 56
          F +C TCH  D+N +
Sbjct: 10 FKQCMTCHRADKNMV 24


>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 499

 Score = 23.4 bits (49), Expect = 4.2
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 45  CQTCHTTDRNAICVNCIKSCHA 66
           C  CH+ +         +S HA
Sbjct: 79  CVECHSDETPVWVRAWKRSTHA 100


>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum
          [TaxId: 34018]}
          Length = 118

 Score = 23.1 bits (49), Expect = 4.3
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 42 FYRCQTCHTTDRNA 55
          F +C  CH    +A
Sbjct: 10 FKKCMACHRVGPDA 23


>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein
          2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 22.6 bits (48), Expect = 4.4
 Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 3/35 (8%)

Query: 43 YRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
          Y+C  C       +C  C  S          R  R
Sbjct: 40 YKCTECIEYH---LCQECFDSYCHLSHTFTFREKR 71


>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 21.6 bits (45), Expect = 4.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 23 TSGQCLYKISSYTSFPMHDFYRCQTCHTT 51
          T   C   I + + FP  + + C TCH T
Sbjct: 1  TCSNCKQVIGTGSFFPKGEDFYCVTCHET 29


>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
           di-tetraheme cytochrome c3 [TaxId: 879]}
          Length = 106

 Score = 22.8 bits (48), Expect = 5.6
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 4/26 (15%)

Query: 44  RCQTCHTT----DRNAICVNCIKSCH 65
            C+ CH      +     + C++ CH
Sbjct: 79  SCRGCHKAMKAKNEQTGPIGCLQGCH 104


>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens
          [TaxId: 408]}
          Length = 99

 Score = 22.3 bits (47), Expect = 6.3
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 42 FYRCQTCHTTDRNAI 56
          F  C+ CH  ++N +
Sbjct: 11 FAPCKACHNFEKNGV 25


>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
           (Ubiquinol-cytochrome c reductase) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 125

 Score = 22.4 bits (48), Expect = 7.2
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 2   YLLEGKKELYLKENWD 17
           Y+LE +     K+  D
Sbjct: 104 YILEAEAAAKEKDELD 119


>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
          1085]}
          Length = 112

 Score = 22.0 bits (46), Expect = 9.3
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 42 FYRCQTCHTTDRNA 55
            +C  CHT D+  
Sbjct: 11 SKKCLACHTFDQGG 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.137    0.461 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,146
Number of extensions: 11890
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 45
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)