BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6685
         (199 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EWF|A Chain A, Crystal Structure Of The Site-specific Dna Nickase
           N.bspd6i
          Length = 610

 Score = 33.1 bits (74), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 74  EKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL-LGP-KGAMACTVAVESVIVD 131
           + +HK+K E  +R  R    A   ++   G  +  G+ L L P K  +   +   S +V 
Sbjct: 226 DSSHKSKIETKMRNARDVADATTRYFRYTGLFVARGNQLVLNPEKSDLIDEIISSSKVVK 285

Query: 132 HYN--EQLRALMSDPA-------ANRELMDVIHKFRDEEQEHHDTGLEH 171
           +Y   E+      +P+          +L+D+ H+ RDE     +  +EH
Sbjct: 286 NYTRVEEFHEYYGNPSLPQFSFETKEQLLDLAHRIRDENTRLAEQLVEH 334


>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
            Human Plcbeta3
 pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
            Human Plcbeta3
          Length = 1235

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 24   LHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLGN-SSVAPKIQEMWDQE-KAHKAKF 81
            ++++ +T  ++ I R++ A +   DR+ AGQ  VL   +   PK+     QE +  +A+ 
Sbjct: 1125 INRRHITESVNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQECQEQRARL 1184

Query: 82   EELIRK 87
             + IR+
Sbjct: 1185 PQEIRR 1190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,682,944
Number of Sequences: 62578
Number of extensions: 216586
Number of successful extensions: 565
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 6
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)