Query psy6685
Match_columns 199
No_of_seqs 127 out of 433
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4061|consensus 100.0 1.6E-69 3.5E-74 448.9 16.5 184 16-199 32-216 (217)
2 PF03232 COQ7: Ubiquinone bios 100.0 6.5E-68 1.4E-72 438.7 19.9 169 31-199 1-171 (172)
3 cd01042 DMQH Demethoxyubiquino 100.0 4.8E-66 1E-70 425.1 19.0 164 33-199 1-165 (165)
4 COG2941 CAT5 Ubiquinone biosyn 100.0 3E-64 6.5E-69 419.2 19.7 171 24-199 33-203 (204)
5 cd00657 Ferritin_like Ferritin 99.1 6.9E-09 1.5E-13 75.2 13.2 127 35-169 1-127 (130)
6 cd01045 Ferritin_like_AB Uncha 98.7 9.3E-07 2E-11 66.9 14.4 125 36-167 2-134 (139)
7 cd07908 Mn_catalase_like Manga 98.6 1.1E-06 2.3E-11 70.4 11.8 134 28-167 9-149 (154)
8 cd01044 Ferritin_CCC1_N Ferrit 98.5 2.9E-06 6.3E-11 66.1 12.4 117 36-167 2-118 (125)
9 cd01052 DPSL DPS-like protein, 98.4 1.2E-05 2.7E-10 63.1 14.2 136 30-168 4-144 (148)
10 COG1633 Uncharacterized conser 98.3 1.9E-05 4.1E-10 65.9 13.2 135 29-168 21-162 (176)
11 PF02915 Rubrerythrin: Rubrery 98.1 4.7E-05 1E-09 57.7 9.7 127 36-167 2-132 (137)
12 cd01051 Mn_catalase Manganese 98.0 0.00011 2.3E-09 60.3 11.0 126 30-167 18-147 (156)
13 PRK10635 bacterioferritin; Pro 98.0 0.00025 5.5E-09 58.1 12.8 122 33-167 7-133 (158)
14 cd00907 Bacterioferritin Bacte 97.8 0.00097 2.1E-08 52.6 13.8 124 32-167 5-132 (153)
15 PRK13456 DNA protection protei 97.7 0.0014 3E-08 55.5 12.9 133 29-168 17-158 (186)
16 TIGR00754 bfr bacterioferritin 97.6 0.0021 4.6E-08 51.6 13.2 127 30-168 4-134 (157)
17 PF00210 Ferritin: Ferritin-li 97.5 0.0083 1.8E-07 45.5 13.8 119 42-167 9-131 (142)
18 PRK13456 DNA protection protei 97.2 0.0014 3.1E-08 55.5 7.2 59 32-93 107-167 (186)
19 PF13668 Ferritin_2: Ferritin- 97.1 0.012 2.7E-07 45.8 11.7 118 36-167 5-130 (137)
20 cd01053 AOX Alternative oxidas 96.9 0.0057 1.2E-07 51.1 8.2 95 69-168 47-161 (168)
21 cd01055 Nonheme_Ferritin nonhe 96.9 0.041 8.9E-07 43.6 12.9 119 33-167 4-131 (156)
22 cd01041 Rubrerythrin Rubreryth 96.9 0.025 5.4E-07 44.2 11.5 118 35-167 4-125 (134)
23 PLN02478 alternative oxidase 96.8 0.013 2.8E-07 53.2 10.0 97 65-167 188-304 (328)
24 TIGR02284 conserved hypothetic 96.8 0.12 2.5E-06 41.4 14.6 126 31-167 3-134 (139)
25 PF01786 AOX: Alternative oxid 96.5 0.031 6.6E-07 48.1 10.2 96 67-167 85-201 (207)
26 cd01048 Ferritin_like_AB2 Unch 96.2 0.3 6.4E-06 38.7 13.7 115 44-170 12-133 (135)
27 cd07908 Mn_catalase_like Manga 96.1 0.012 2.5E-07 47.0 5.4 53 33-85 102-154 (154)
28 PRK10635 bacterioferritin; Pro 96.1 0.0095 2.1E-07 48.8 4.9 57 31-87 81-140 (158)
29 cd01051 Mn_catalase Manganese 96.0 0.023 5E-07 46.5 6.6 57 32-88 99-155 (156)
30 PRK12775 putative trifunctiona 95.6 0.19 4E-06 52.0 12.5 131 31-167 859-990 (1006)
31 cd01046 Rubrerythrin_like rubr 95.4 0.49 1.1E-05 36.8 11.6 109 34-167 3-114 (123)
32 cd01052 DPSL DPS-like protein, 95.3 0.048 1E-06 42.6 5.9 55 31-85 92-148 (148)
33 PF10118 Metal_hydrol: Predict 95.0 1 2.2E-05 39.4 13.9 124 42-170 38-168 (253)
34 cd01056 Euk_Ferritin eukaryoti 94.8 0.72 1.6E-05 37.2 11.4 114 42-168 13-136 (161)
35 PF05974 DUF892: Domain of unk 94.7 1.9 4.1E-05 35.1 16.0 136 30-167 3-145 (159)
36 PRK10304 ferritin; Provisional 94.7 0.67 1.5E-05 38.1 11.3 111 43-167 16-136 (165)
37 cd01045 Ferritin_like_AB Uncha 94.2 0.16 3.4E-06 38.0 6.0 54 31-84 85-138 (139)
38 COG2406 Protein distantly rela 93.6 0.21 4.6E-06 41.4 6.0 62 27-88 99-162 (172)
39 cd01043 DPS DPS protein, ferri 93.2 1.3 2.9E-05 34.3 9.9 125 37-165 3-132 (139)
40 PF09537 DUF2383: Domain of un 92.2 0.27 5.8E-06 37.0 4.5 102 32-137 5-109 (111)
41 PF13668 Ferritin_2: Ferritin- 92.1 0.42 9.1E-06 37.1 5.6 55 33-87 83-137 (137)
42 cd00657 Ferritin_like Ferritin 91.8 0.62 1.3E-05 33.0 5.9 51 34-84 79-129 (130)
43 PF02915 Rubrerythrin: Rubrery 91.7 0.65 1.4E-05 34.8 6.1 53 32-84 84-136 (137)
44 cd00904 Ferritin Ferritin iron 90.3 5.8 0.00013 32.0 10.8 111 42-165 13-133 (160)
45 COG3461 Uncharacterized conser 89.9 0.74 1.6E-05 35.2 4.8 58 37-101 22-79 (103)
46 PF11583 AurF: P-aminobenzoate 89.3 5.5 0.00012 35.0 10.8 138 25-170 66-222 (304)
47 TIGR00754 bfr bacterioferritin 89.3 1.1 2.4E-05 35.8 5.8 56 32-87 82-140 (157)
48 cd01041 Rubrerythrin Rubreryth 88.6 1.2 2.7E-05 34.6 5.5 58 31-88 72-133 (134)
49 cd00907 Bacterioferritin Bacte 88.0 1.8 3.8E-05 33.9 6.1 57 32-88 81-140 (153)
50 PF03232 COQ7: Ubiquinone bios 87.3 3 6.5E-05 34.9 7.3 54 126-183 14-71 (172)
51 cd01044 Ferritin_CCC1_N Ferrit 85.5 2.7 5.9E-05 32.4 5.8 45 36-86 80-124 (125)
52 cd01042 DMQH Demethoxyubiquino 85.1 2.5 5.5E-05 35.1 5.8 61 37-101 87-150 (165)
53 COG2406 Protein distantly rela 84.8 22 0.00047 29.7 12.3 136 30-172 15-159 (172)
54 cd01046 Rubrerythrin_like rubr 84.8 2.7 5.8E-05 32.6 5.5 58 31-88 62-122 (123)
55 PF04305 DUF455: Protein of un 84.1 17 0.00037 32.2 10.8 117 44-168 78-201 (253)
56 cd07909 YciF YciF bacterial st 81.8 27 0.00057 28.4 11.8 128 34-163 5-138 (147)
57 PRK09448 DNA starvation/statio 80.8 29 0.00064 28.3 12.3 74 21-94 11-87 (162)
58 PF14518 Haem_oxygenas_2: Iron 79.3 8.8 0.00019 28.3 6.4 71 73-143 14-91 (106)
59 COG3546 Mn-containing catalase 79.1 15 0.00032 33.1 8.6 128 39-167 30-181 (277)
60 PRK13654 magnesium-protoporphy 79.0 20 0.00043 33.4 9.6 129 21-167 72-214 (355)
61 CHL00185 ycf59 magnesium-proto 78.4 27 0.00059 32.4 10.3 129 21-167 68-210 (351)
62 TIGR02029 AcsF magnesium-proto 78.0 33 0.00072 31.7 10.7 129 21-167 62-204 (337)
63 cd01047 ACSF Aerobic Cyclase S 77.3 26 0.00057 32.2 9.8 128 22-167 53-194 (323)
64 COG3687 Predicted metal-depend 77.3 52 0.0011 29.7 11.5 122 42-170 50-180 (280)
65 COG2976 Uncharacterized protei 75.6 26 0.00056 30.4 8.8 79 71-161 4-82 (207)
66 PF00210 Ferritin: Ferritin-li 74.0 12 0.00026 27.9 5.9 57 32-88 80-139 (142)
67 cd01055 Nonheme_Ferritin nonhe 73.0 15 0.00032 28.9 6.4 57 32-88 80-139 (156)
68 PLN02508 magnesium-protoporphy 72.7 21 0.00045 33.2 8.0 128 22-167 69-210 (357)
69 PF12960 DUF3849: Protein of u 72.7 4.5 9.7E-05 32.7 3.3 41 115-162 23-63 (133)
70 COG2193 Bfr Bacterioferritin ( 70.2 63 0.0014 26.9 12.5 122 32-167 6-133 (157)
71 COG2193 Bfr Bacterioferritin ( 69.5 14 0.0003 30.8 5.6 58 30-87 80-140 (157)
72 PF05067 Mn_catalase: Manganes 66.9 69 0.0015 29.0 10.0 140 26-167 18-186 (283)
73 COG1633 Uncharacterized conser 66.8 21 0.00046 29.8 6.3 57 28-88 113-169 (176)
74 PRK12775 putative trifunctiona 64.7 15 0.00033 38.3 6.1 61 34-94 943-1005(1006)
75 PF11553 DUF3231: Protein of u 64.0 75 0.0016 25.5 12.3 119 44-171 29-147 (166)
76 COG1592 Rubrerythrin [Energy p 63.6 19 0.0004 30.2 5.4 57 33-89 5-64 (166)
77 COG3105 Uncharacterized protei 63.0 44 0.00095 27.2 7.1 69 101-170 16-87 (138)
78 PF05067 Mn_catalase: Manganes 61.3 7.1 0.00015 35.2 2.7 62 29-90 135-196 (283)
79 COG2941 CAT5 Ubiquinone biosyn 61.0 7.3 0.00016 33.5 2.5 40 44-83 135-176 (204)
80 PF13794 MiaE_2: tRNA-(MS[2]IO 59.5 42 0.00091 28.6 6.9 71 30-100 4-75 (185)
81 KOG4061|consensus 57.3 15 0.00032 31.6 3.8 72 113-189 37-125 (217)
82 PF10624 TraS: Plasmid conjuga 52.6 8.6 0.00019 31.6 1.5 45 93-137 74-118 (164)
83 PRK15022 ferritin-like protein 49.9 54 0.0012 27.2 5.9 52 43-94 16-70 (167)
84 cd01043 DPS DPS protein, ferri 49.7 21 0.00045 27.6 3.3 53 32-84 83-138 (139)
85 PF12902 Ferritin-like: Ferrit 48.4 75 0.0016 27.5 6.8 56 44-99 8-66 (227)
86 PF05461 ApoL: Apolipoprotein 45.5 47 0.001 30.2 5.4 41 99-144 130-170 (313)
87 COG3546 Mn-containing catalase 45.4 17 0.00036 32.8 2.3 57 33-89 134-190 (277)
88 cd01048 Ferritin_like_AB2 Unch 43.8 59 0.0013 25.5 5.1 54 31-84 81-134 (135)
89 cd01058 AAMH_B Aromatic and Al 42.1 2.6E+02 0.0056 25.1 13.4 103 61-168 129-247 (304)
90 PF02084 Bindin: Bindin; Inte 37.3 68 0.0015 28.3 4.8 38 129-168 133-171 (238)
91 PF07875 Coat_F: Coat F domain 31.7 1.7E+02 0.0036 19.8 5.6 48 43-90 12-59 (64)
92 PRK10304 ferritin; Provisional 29.3 2.3E+02 0.0049 23.1 6.5 60 30-89 80-145 (165)
93 PF05163 DinB: DinB family; I 28.9 82 0.0018 24.3 3.7 37 62-98 121-157 (168)
94 COG1528 Ftn Ferritin-like prot 28.5 2.2E+02 0.0048 23.9 6.3 81 43-135 16-103 (167)
95 cd07910 MiaE MiaE tRNA-modifyi 28.1 1.3E+02 0.0028 25.6 4.9 46 60-105 47-92 (180)
96 TIGR02284 conserved hypothetic 28.1 1.3E+02 0.0027 23.9 4.7 43 42-84 95-138 (139)
97 cd01056 Euk_Ferritin eukaryoti 27.9 2E+02 0.0042 22.9 5.8 59 31-89 82-144 (161)
98 COG5346 Predicted membrane pro 26.0 65 0.0014 26.0 2.6 30 61-90 52-81 (136)
99 cd07911 RNRR2_Rv0233_like Ribo 26.0 4.4E+02 0.0096 22.9 16.0 142 24-168 38-197 (280)
100 PF11239 DUF3040: Protein of u 25.1 2.6E+02 0.0057 20.0 6.1 27 88-114 33-59 (82)
101 COG3461 Uncharacterized conser 23.9 70 0.0015 24.6 2.3 25 146-170 44-68 (103)
102 PF02830 V4R: V4R domain; Int 23.8 55 0.0012 22.1 1.6 19 99-117 23-41 (62)
103 PF10097 DUF2335: Predicted me 23.1 87 0.0019 21.0 2.5 32 60-91 13-44 (50)
104 cd01050 Acyl_ACP_Desat Acyl AC 23.0 2.1E+02 0.0045 26.0 5.6 44 44-87 159-204 (297)
105 PRK11677 hypothetical protein; 22.8 3.3E+02 0.0072 21.9 6.2 71 97-167 3-79 (134)
106 PF06522 B12D: NADH-ubiquinone 22.1 50 0.0011 23.6 1.2 23 95-117 6-28 (73)
107 PF12597 DUF3767: Protein of u 21.8 3.7E+02 0.008 21.0 6.1 39 91-129 37-77 (118)
108 PRK07209 ribonucleotide-diphos 21.3 6.5E+02 0.014 23.1 15.2 143 24-169 90-256 (369)
109 PF10805 DUF2730: Protein of u 20.4 3.5E+02 0.0075 20.5 5.6 60 96-158 10-78 (106)
110 PF06295 DUF1043: Protein of u 20.4 4.2E+02 0.0092 20.7 7.3 20 98-117 4-23 (128)
111 PF12713 DUF3806: Domain of un 20.2 1.7E+02 0.0036 21.5 3.7 39 78-117 3-43 (87)
No 1
>KOG4061|consensus
Probab=100.00 E-value=1.6e-69 Score=448.95 Aligned_cols=184 Identities=60% Similarity=0.912 Sum_probs=178.5
Q ss_pred ecccccCCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q psy6685 16 QGFRLVRNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL 95 (199)
Q Consensus 16 ~~~~~~~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L 95 (199)
.-+++..++|++.++..++++||||||||+||++||.||++++...+++|.|++|||||++|++.|++++.++|||||+|
T Consensus 32 ~r~~s~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l 111 (217)
T KOG4061|consen 32 ERVISRGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGTSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL 111 (217)
T ss_pred eeeecCCcccCchhHHHHHHhheeccccccccchhhhchhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCchhh
Confidence 34556777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCc-ccHHHHHHHHHHHHHHHhhHHhhHhCCCC
Q psy6685 96 LPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPA-ANRELMDVIHKFRDEEQEHHDTGLEHGAE 174 (199)
Q Consensus 96 ~PlW~~~gf~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~-~~~~L~~~i~~~r~DE~eH~d~A~~~ga~ 174 (199)
.|+|+++||+||++|||+|++++||||+|||++|..|||+||++|.+.|| +.++|+.+|.+|||||+||+|+|+++++.
T Consensus 112 ~P~w~vagfalGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~~fRDeEleHhdtgv~hda~ 191 (217)
T KOG4061|consen 112 TPLWNVAGFALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTITKFRDEELEHHDTGVEHDAE 191 (217)
T ss_pred hhHHHHHHHHhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHHHHhHHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999888 88999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhcC
Q psy6685 175 QAPFYKLMTDVIKVGCKVAIGVAKV 199 (199)
Q Consensus 175 ~ap~~~~l~~~ik~g~~~Ai~la~r 199 (199)
++|+|.+|+++|+.|||+|||+|||
T Consensus 192 ~Apay~~lt~~Iq~gCk~AI~~~er 216 (217)
T KOG4061|consen 192 KAPAYAALTEIIQTGCKVAIWIAER 216 (217)
T ss_pred cCcHHHHHHHHHHHHhHHHHHHhhc
Confidence 9999999999999999999999997
No 2
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=100.00 E-value=6.5e-68 Score=438.67 Aligned_cols=169 Identities=54% Similarity=0.858 Sum_probs=163.3
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHH
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLG-NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAG 109 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~-~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ 109 (199)
++++++||||||||+|||+||+||+++++ ++.++++|++|+++|++||+||+++|+++|+|||+|+|+|+++||+||++
T Consensus 1 ~~i~r~lRVdHAGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~ 80 (172)
T PF03232_consen 1 QLIARILRVDHAGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGAL 80 (172)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCC-cccHHHHHHHHHHHHHHHhhHHhhHhCCCCCChhHHHHHHHHHH
Q psy6685 110 SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDP-AANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKV 188 (199)
Q Consensus 110 tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d-~~~~~L~~~i~~~r~DE~eH~d~A~~~ga~~ap~~~~l~~~ik~ 188 (199)
||++|++++|+||+|||++|++|||+||++|++.+ +.+++++++|++|||||.+|+|+|+++|++++|+|++|+++|++
T Consensus 81 tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~d~A~~~~a~~~p~~~~l~~~i~~ 160 (172)
T PF03232_consen 81 TALLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHRDTAIEAGAEKAPAYRLLSAVIKA 160 (172)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999653 25588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy6685 189 GCKVAIGVAKV 199 (199)
Q Consensus 189 g~~~Ai~la~r 199 (199)
||++|||||+|
T Consensus 161 ~~~~ai~~a~r 171 (172)
T PF03232_consen 161 GCKAAIWLAKR 171 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999999997
No 3
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=100.00 E-value=4.8e-66 Score=425.11 Aligned_cols=164 Identities=57% Similarity=0.901 Sum_probs=160.1
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhh
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL 112 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal 112 (199)
++++||||||||+|||+||+||+++++++.++++|++|+++|++||+||+++|+++|+|||+|+|+|+++||+||++||+
T Consensus 1 ~~~~~RVnHAGE~gA~~IY~gQ~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal 80 (165)
T cd01042 1 LARILRVNHAGEVGAVRIYRGQLAVARDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTAL 80 (165)
T ss_pred CcchhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHHHHhhHHhhHhCCCCCChhHHHHHHHHHHHHH
Q psy6685 113 LGPKGAMACTVAVESVIVDHYNEQLRALMSD-PAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCK 191 (199)
Q Consensus 113 ~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~-d~~~~~L~~~i~~~r~DE~eH~d~A~~~ga~~ap~~~~l~~~ik~g~~ 191 (199)
+|++|+|+||++||++|++||++||++|+.. | ++++++|++||+||.+|+|+|+++|++++|+|++++++|+.||+
T Consensus 81 ~G~~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d---~~l~~~l~~~r~DE~~H~d~A~~~ga~~a~~~~~~~~~i~~~~~ 157 (165)
T cd01042 81 LGKKAAMACTAAVETVVEEHYNDQLRELPAQPD---KELRAIIEQFRDDELEHADIAEELGAEKAPLYALLKALIKAGCK 157 (165)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCcCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999987 5 77888899999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy6685 192 VAIGVAKV 199 (199)
Q Consensus 192 ~Ai~la~r 199 (199)
++||+|+|
T Consensus 158 ~~i~~a~r 165 (165)
T cd01042 158 VAIWLAKR 165 (165)
T ss_pred HHHHHHcC
Confidence 99999986
No 4
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=100.00 E-value=3e-64 Score=419.24 Aligned_cols=171 Identities=43% Similarity=0.611 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHH
Q psy6685 24 LHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAG 103 (199)
Q Consensus 24 ~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~g 103 (199)
.||+.+++.++++||||||||+|||+||+||.++++.+..+..|+|||+||++||+||++++.++++|||+|+|+||.+|
T Consensus 33 dlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W~~~~ 112 (204)
T COG2941 33 DLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSPEPRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLWYAAA 112 (204)
T ss_pred CcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhHhCCCCCChhHHHHH
Q psy6685 104 FILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMT 183 (199)
Q Consensus 104 f~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~~~ga~~ap~~~~l~ 183 (199)
|+||++|||+|+|++|+||++||+||++||++||++|+..| .+++++|.||||||++|.|+|+. +..++++.+++
T Consensus 113 FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L~~~d---~~lr~~l~qfR~DE~eH~d~Ai~--a~~a~~~~~i~ 187 (204)
T COG2941 113 FALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLRELPNLD---AELRAILAQFRDDELEHLDNAIA--AGEAIFPAPIT 187 (204)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHhhHHHHHHHHHHH--hCCCCccchHH
Confidence 99999999999999999999999999999999999999988 67888899999999999999999 44478889999
Q ss_pred HHHHHHHHHHHHHhcC
Q psy6685 184 DVIKVGCKVAIGVAKV 199 (199)
Q Consensus 184 ~~ik~g~~~Ai~la~r 199 (199)
.+++++|+++||+|+|
T Consensus 188 ~~m~~~cRi~i~~a~r 203 (204)
T COG2941 188 KAMKLICRIMIKSAYR 203 (204)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999987
No 5
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.06 E-value=6.9e-09 Score=75.23 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=105.9
Q ss_pred HHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhcC
Q psy6685 35 EIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLG 114 (199)
Q Consensus 35 rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G 114 (199)
++|+....+|..|..+|.-+...++++.++..+..+..+|.+|...|.+++..++..|+...+. .....+......+
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 77 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH---LLAAYALPKTSDD 77 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH---HHHhcccCCCccC
Confidence 3577788899999999999999999889999999999999999999999999999999876655 2233344455666
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhH
Q psy6685 115 PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGL 169 (199)
Q Consensus 115 ~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~ 169 (199)
...++......|....+.|...++.+. | +++.+.+..+..||..|.+...
T Consensus 78 ~~~~l~~~~~~E~~~~~~y~~~~~~~~--d---~~~~~~~~~~~~~E~~H~~~~~ 127 (130)
T cd00657 78 PAEALRAALEVEARAIAAYRELIEQAD--D---PELRRLLERILADEQRHAAWFR 127 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--C---hHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888999999999999998774 4 5566779999999999987643
No 6
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.71 E-value=9.3e-07 Score=66.92 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=99.9
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCchhhHHHHHHHHH------
Q psy6685 36 IIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR--VRPTALLPFWNVAGFILG------ 107 (199)
Q Consensus 36 ilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~--~RpS~L~PlW~~~gf~LG------ 107 (199)
+|...-.+|..+...|.-++...+++.++..++.+..+|..|..++.+++.+++ .-|+. +.+...+..++
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPEL--EPEDYKEEVEEEPEFKK 79 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc--cHHHHHHHHhhhhhHHH
Confidence 466677899999999999999999999999999999999999999999999986 33333 22323333333
Q ss_pred HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 108 AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 108 a~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
..+...+..-++-.-...|+...+.|+.-+.... | +++++++.++.+||..|.+.
T Consensus 80 ~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~--d---~~~~~~~~~l~~~E~~H~~~ 134 (139)
T cd01045 80 ALESLMDPLEALRLAIEIEKDAIEFYEELAEKAE--D---PEVKKLFEELAEEERGHLRL 134 (139)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888889999999999999987653 3 56677799999999999865
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=98.58 E-value=1.1e-06 Score=70.42 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhch---hHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHH
Q psy6685 28 RVTRQLDEIIRVDHA---GELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVA 102 (199)
Q Consensus 28 ~~~~~i~rilRVdHA---GE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~ 102 (199)
..++..+++|.-+-+ ||+.|+.-|--|....+ ++.++..+..+..+|..|..+|.+++.+++..|....+ +...
T Consensus 9 ~~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~-~~~~ 87 (154)
T cd07908 9 GPNPRYAELLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSS-SSDK 87 (154)
T ss_pred CCChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh-cccc
Confidence 457788899998888 99999999999998876 57889999999999999999999999999998874321 1100
Q ss_pred -HHHHH-HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 103 -GFILG-AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 103 -gf~LG-a~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.+..+ ......+..-.+-+-...|+.--++|.+.+... .| +.+++.++.+..||.+|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~--~d---~~~r~ll~~I~~eE~~H~~~ 149 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI--KD---PYIRALLNRIILDEKLHIKI 149 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHHHHHHHHH
Confidence 00000 011111234477888899999999999999865 34 66667799999999999874
No 8
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.51 E-value=2.9e-06 Score=66.06 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=98.5
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhcCc
Q psy6685 36 IIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGP 115 (199)
Q Consensus 36 ilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~ 115 (199)
.++-+-..|.-+..+|+-.+...+++.++..+..++++|.+|...|.+++.+.+..|. .|-+++ +.+..++.++|.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~--~~~~~~--~~~~~l~~~~g~ 77 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP--RPKLKI--FFYKLLARIFGP 77 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CccHHH--HHHHHHHHHHhH
Confidence 4566778999999999999999999999999999999999999999999999999886 444444 455667778888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 116 KGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 116 ~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
..++-.....|+---.-|.+++.. ...+.++-.||.+|...
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~ 118 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEV 118 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHH
Confidence 888888888998888889888755 23478899999999864
No 9
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=98.43 E-value=1.2e-05 Score=63.07 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=103.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh-hHHHHHHH
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLP-FWNVAGFI 105 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~P-lW~~~gf~ 105 (199)
++.+...|-..-+-|+.+...|..+.+..+.+ .+...+++...+|.+|...+.+++..+|.+|..-.- +...+|..
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~ 83 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCK 83 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhccc
Confidence 55677888888999999999999999998866 477899999999999999999999999999998442 22222211
Q ss_pred HHH-HhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 106 LGA-GSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 106 LGa-~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
++- .....+.+-.+-..-..|+.+.+.|++.++.-.+.| ....+.+..+-.||.+|.+.-
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D---~~t~~ll~~~l~de~~h~~~~ 144 (148)
T cd01052 84 CGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKD---PVTYDLALAILNEEIEHEEDL 144 (148)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHHH
Confidence 211 122333455677777889999999999997654455 444455999999999998753
No 10
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.9e-05 Score=65.94 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCchhhHHHHHHHHH
Q psy6685 29 VTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP-TALLPFWNVAGFILG 107 (199)
Q Consensus 29 ~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~Rp-S~L~PlW~~~gf~LG 107 (199)
...-+.++|+..=.+|..|...|.-|+..+.+++++.++..+.++|.+|+.+|++++.++.-+| |..-+.|...++.+.
T Consensus 21 ~~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (176)
T COG1633 21 KELSIEELLAIAIRGELEAIKFYEELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILE 100 (176)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhcc
Confidence 3456889999999999999999999999999999999999999999999999999999999888 677788888887777
Q ss_pred HHhh---hcCchh---hhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 108 AGSA---LLGPKG---AMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 108 a~ta---l~G~~~---~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
.+.= ..|... +.-.....|+.=..-|...+..+.. .+.+..++.+-++|..|...-
T Consensus 101 ~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l 162 (176)
T COG1633 101 YLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGL 162 (176)
T ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6544 333221 1222233455556788888888854 455566999999999997653
No 11
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.06 E-value=4.7e-05 Score=57.68 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=89.3
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhh-
Q psy6685 36 IIRVDHAGELGADRIYAGQMAVLGN--SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL- 112 (199)
Q Consensus 36 ilRVdHAGE~gA~~IY~GQ~~v~~~--~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal- 112 (199)
+|+..=.+|..+..+|.-.+..+++ |.++..+..+.++|..|..+|.+++.+.+.......+-....++........
T Consensus 2 ~L~~A~~~E~~~~~~Y~~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (137)
T PF02915_consen 2 ILEMAIKMELEAAKFYRELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEET 81 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhh
Confidence 5677778999999999999999987 5599999999999999999999999988532211100000000000000000
Q ss_pred -cCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 113 -LGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 113 -~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.+...++-.....|+.--.+|....+.++. +++++.+..+..||..|.+.
T Consensus 82 ~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~l~~~E~~H~~~ 132 (137)
T PF02915_consen 82 DENLEEALEMAIKEEKDAYEFYAELARKAPD-----PEIRKLFEELAKEEKEHEDL 132 (137)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 033455566666788888999999988853 55667799999999999875
No 12
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=97.98 E-value=0.00011 Score=60.26 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhch---hHHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHH
Q psy6685 30 TRQLDEIIRVDHA---GELGADRIYAGQMAVL-GNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFI 105 (199)
Q Consensus 30 ~~~i~rilRVdHA---GE~gA~~IY~GQ~~v~-~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~ 105 (199)
++..+++|=-+-. ||+.|.-=|=-|.++. +++.++..+.....+|..|+.++.+++..++.-|.- . .|. +++
T Consensus 18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g-~-pw~-~~y- 93 (156)
T cd01051 18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG-V-PWT-AAY- 93 (156)
T ss_pred CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-C-cCC-Ccc-
Confidence 5556666655544 7999999999999999 688899999999999999999999999999875544 2 232 333
Q ss_pred HHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 106 LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 106 LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
+..--.-...+--..+-|..--..|.++++.. +| +.+++++..+..||..|.+.
T Consensus 94 ---v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~--~D---p~v~~~l~~I~~rE~~H~~~ 147 (156)
T cd01051 94 ---IQSSGNLVADLRSNIAAESRARLTYERLYEMT--DD---PGVKDTLSFLLVREIVHQNA 147 (156)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHHHHHHHHH
Confidence 22211334455566677888899999999886 35 66777799999999999875
No 13
>PRK10635 bacterioferritin; Provisional
Probab=97.96 E-value=0.00025 Score=58.10 Aligned_cols=122 Identities=15% Similarity=0.052 Sum_probs=93.4
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHH
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAG 109 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ 109 (199)
+-..|=-.=+.|+.|+.-|.-+..++.+- .+......-..+|.+|-..|-++|..+|..|++ .|+ +..
T Consensus 7 vi~~LN~~L~~El~Ai~QY~~ha~~~~~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~-~~~--------~~~ 77 (158)
T PRK10635 7 IINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNL-QDL--------GKL 77 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCC--------CCC
Confidence 33344444578999999999999998743 445556666889999999999999999999997 232 111
Q ss_pred -hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 110 -SALLGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 110 -tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~-~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.+ -.-+-.+-+--+.|..+.+.|++-++.-. ..|+.++++ ++.|-+||.+|.|-
T Consensus 78 ~~g-~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~l---l~~iL~dEe~H~~~ 133 (158)
T PRK10635 78 NIG-EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDM---MIEILADEEGHIDW 133 (158)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHH
Confidence 11 13355677888999999999999998776 467666666 99999999999976
No 14
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=97.83 E-value=0.00097 Score=52.56 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=92.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGA 108 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa 108 (199)
.+...|--.-++|+.|...|..+...++++ .+..++.+...+|.+|..++-+++.++|.+|.. .|+..+. .|
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~-~~~~~~~---~~- 79 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNL-QRLGKLR---IG- 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CcCCCCC---cC-
Confidence 355666667799999999999999998765 456888999999999999999999999999976 3311110 00
Q ss_pred HhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 109 GSALLGPKGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 109 ~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~-~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
-...-.+.....-|+.+.+.|++-+..-.. .| ....+.++.+-.||.+|...
T Consensus 80 ----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D---~~t~~~l~~~~~~e~~h~~~ 132 (153)
T cd00907 80 ----EDVPEMLENDLALEYEAIAALNEAIALCEEVGD---YVSRDLLEEILEDEEEHIDW 132 (153)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 123455666677788888888888754432 35 55556699999999999875
No 15
>PRK13456 DNA protection protein DPS; Provisional
Probab=97.66 E-value=0.0014 Score=55.54 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=99.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh-HHHHHH
Q psy6685 29 VTRQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPF-WNVAGF 104 (199)
Q Consensus 29 ~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~Pl-W~~~gf 104 (199)
++..+-++|--+-|.|+-|..=|.=..+++. ...++++++++..+|..|-..+-++|.++|.-|.. +|- |.-.+
T Consensus 17 d~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~-~p~~~~~ls- 94 (186)
T PRK13456 17 DVDKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPR-DIREFHDIS- 94 (186)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ChHHHhhhh-
Confidence 4667778888899999999999998888876 45788999999999999999999999999999987 454 54321
Q ss_pred HHHHHhhhcCch--hhhHHHH---HHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 105 ILGAGSALLGPK--GAMACTV---AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 105 ~LGa~tal~G~~--~~ma~t~---aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
+..-+-.+.+ -....+. .=|+-.-+.|++=++.....||....+ +.++-.||.+|.+.=
T Consensus 95 --~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l---~~~IL~dE~eH~~dl 158 (186)
T PRK13456 95 --ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDL---ALAILQEEIEHEAWF 158 (186)
T ss_pred --cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHH
Confidence 1111122222 1222222 236666789999999999888766666 888999999999764
No 16
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=97.64 E-value=0.0021 Score=51.62 Aligned_cols=127 Identities=16% Similarity=0.086 Sum_probs=92.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSV---APKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFIL 106 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~---~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~L 106 (199)
++.+...|=...+.|+.|...|..+..+..+..+ ..+..+-..+|.+|..+|-+++..+|..|.+- |+ .
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~-~i---~---- 75 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQ-DL---G---- 75 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-cC---C----
Confidence 4567778888889999999999999998865444 45778888999999999999999999999942 11 0
Q ss_pred HHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHh-hcCCcccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 107 GAGSALLGPKGAMACTVAVESVIVDHYNEQLRAL-MSDPAANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 107 Ga~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L-~~~d~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
....--.-.-.+-..-.-|..+.+-|++.+..- ...|+.+..+ ++.|-.||.+|.+.-
T Consensus 76 -~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~l---l~~~i~eee~h~~~l 134 (157)
T TIGR00754 76 -KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDL---LEEILEDEEEHIDWL 134 (157)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 000001122334445566778889999998743 3355444444 999999999998763
No 17
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=97.46 E-value=0.0083 Score=45.50 Aligned_cols=119 Identities=20% Similarity=0.251 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhcCchhh
Q psy6685 42 AGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGA 118 (199)
Q Consensus 42 AGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~ 118 (199)
+.|+.+.-.|..+......+ .+..+++.+.++|.+|..++.+++..+|..|+.-..-+.- +-.....-..+-.
T Consensus 9 ~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~----~~~~~~~~~~~~~ 84 (142)
T PF00210_consen 9 ALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPE----IPKPPEWTDPREA 84 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH----HHSSSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh----hhccccCCcHHHH
Confidence 57899999999999877654 5778899999999999999999999999999885542222 0000011356778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 119 MACTVAVESVIVDHYNEQLRALMSD-PAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 119 ma~t~aVE~~V~~Hy~~QL~~L~~~-d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
+...-+.|..+.+.|++.+..-... | ..+.+.+..|-+||.+|...
T Consensus 85 l~~~l~~e~~~~~~~~~l~~~a~~~~D---~~t~~~~~~~l~~~~~~~~~ 131 (142)
T PF00210_consen 85 LEAALEDEKEIIEEYRELIKLAEKEGD---PETADFLDEFLEEEEKHIWM 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999777653 5 56666699999999998754
No 18
>PRK13456 DNA protection protein DPS; Provisional
Probab=97.17 E-value=0.0014 Score=55.46 Aligned_cols=59 Identities=24% Similarity=0.274 Sum_probs=52.5
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPT 93 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS 93 (199)
-+..||+.|-.+|-||+.-|+=-.-.++ +|-....+.+.+.+|.+|..||+++|.. +||
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~---~~~ 167 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFSELLGG---GPS 167 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 5899999999999999999998777665 6777899999999999999999999964 676
No 19
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.13 E-value=0.012 Score=45.85 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=87.5
Q ss_pred HHhhhchhHHHHHHHHHHHHHh--------hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q psy6685 36 IIRVDHAGELGADRIYAGQMAV--------LGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILG 107 (199)
Q Consensus 36 ilRVdHAGE~gA~~IY~GQ~~v--------~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LG 107 (199)
+|..--..|+-+...|...+.- ..++.++..++++.++|..|...+.+.+. |.+|. -.|-...
T Consensus 5 iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~-~~~~~~~------ 75 (137)
T PF13668_consen 5 ILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV-PPPAYDF------ 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC-CCCcccc------
Confidence 3444445789999999988872 33667889999999999999999999996 33331 1111111
Q ss_pred HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 108 AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 108 a~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.......+...+..-..+|.....=|......+. | ++++.++.++-.+|.+|...
T Consensus 76 ~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~--~---~~~~~~~~~i~~~Ea~H~~~ 130 (137)
T PF13668_consen 76 PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIE--D---PELKALAASIAGVEARHAAW 130 (137)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777889999999999998774 3 67778899999999999754
No 20
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=96.90 E-value=0.0057 Score=51.11 Aligned_cols=95 Identities=25% Similarity=0.241 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHH----HHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy6685 69 EMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFI----LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDP 144 (199)
Q Consensus 69 ~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~----LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d 144 (199)
+=..+|..||-.|.++- .||++-=.+-+.+-+ +=++.=++.++.+.-++.-+|+--..=|.+-|+++.+..
T Consensus 47 eEaeNErmHLltf~~l~-----~p~~~~r~~v~~~q~vfy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~ 121 (168)
T cd01053 47 EEAENERMHLLIFEELG-----GPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGL 121 (168)
T ss_pred HHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccc
Confidence 44678999999999653 355544333222211 113455778999999999999999999999998876421
Q ss_pred ----------------cccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 145 ----------------AANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 145 ----------------~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
|+...|+|+|..+|+||.+|.++=
T Consensus 122 ~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~vn 161 (168)
T cd01053 122 KPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKVN 161 (168)
T ss_pred cCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHHHH
Confidence 245678999999999999999873
No 21
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=96.89 E-value=0.041 Score=43.62 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=90.4
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch--h---hHHHHHH
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL--P---FWNVAGF 104 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~--P---lW~~~gf 104 (199)
+...|----++|+.|...|--....+. .|.+...++...++|.+|-..+-++|..+|..|++-. + -|.
T Consensus 4 ~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~---- 79 (156)
T cd01055 4 LEKALNEQINLELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFE---- 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccC----
Confidence 444555566899999999999988876 4567888999999999999999999999999987622 1 121
Q ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 105 ILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 105 ~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~-~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
...-++...-..|+.+.+.|++=++.-. ..| ....+.++.|-+||.+|.+.
T Consensus 80 ---------~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D---~~~~~~l~~~l~~q~e~~~~ 131 (156)
T cd01055 80 ---------SLLEVFEAALEHEQKVTESINNLVDLALEEKD---YATFNFLQWFVKEQVEEEAL 131 (156)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHHHHHHHH
Confidence 1224566667788889999988776654 345 44555589999999999855
No 22
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=96.88 E-value=0.025 Score=44.23 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=84.3
Q ss_pred HHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhh
Q psy6685 35 EIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSA 111 (199)
Q Consensus 35 rilRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ta 111 (199)
..|+-.=+||.-|...|.....+++.. .+...+.....+|..|-..|-++|..++..|. .|.-...
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~--~~~~~~~--------- 72 (134)
T cd01041 4 KNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT--GPPIGIG--------- 72 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--CCCCCcc---------
Confidence 345666689999999999999998744 56788899999999999999999999999999 3311100
Q ss_pred hcCchhhhHHHHHHHHH-HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 112 LLGPKGAMACTVAVESV-IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 112 l~G~~~~ma~t~aVE~~-V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.-.-.+-..-..|.. +.+-|++=+..-... ++....+.++.+-.||.+|.+.
T Consensus 73 --~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e--~d~~~~~~f~~i~~~E~~H~~~ 125 (134)
T cd01041 73 --DTLENLKAAIAGETYEYTEMYPEFAEVAEEE--GFKEAARSFEAIAEAEKVHAER 125 (134)
T ss_pred --hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHH
Confidence 112233344445553 556777666554433 2355566699999999999875
No 23
>PLN02478 alternative oxidase
Probab=96.76 E-value=0.013 Score=53.21 Aligned_cols=97 Identities=26% Similarity=0.276 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHH----HHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHh
Q psy6685 65 PKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVA----GFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRAL 140 (199)
Q Consensus 65 ~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~----gf~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L 140 (199)
..++| ..+|.-||-.|.++. .|+++.=+.-+. -|.+=++.=++.++.+.-++.-+|+.-..-|.+-|+++
T Consensus 188 tLLeE-AeNERMHLLtf~~l~-----~p~w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEEEAV~TYT~~L~ei 261 (328)
T PLN02478 188 ALLEE-AENERMHLMTFMEVA-----KPKWYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDL 261 (328)
T ss_pred HHHHH-HHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 568999999999876 466554443111 11222346678899999999999999999999999987
Q ss_pred hcC----------------CcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 141 MSD----------------PAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 141 ~~~----------------d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.+. -|+...|+++|..+|+||.+|+|.
T Consensus 262 d~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdV 304 (328)
T PLN02478 262 DAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDV 304 (328)
T ss_pred hcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhcc
Confidence 431 134567899999999999999986
No 24
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.76 E-value=0.12 Score=41.38 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=92.0
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH--
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGA-- 108 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa-- 108 (199)
..+..+|..++=|+-| |+-=+--.++|.++.+++++..+=..|...+...+..+|..|---..+ .|.+-.+
T Consensus 3 ~~Ln~Lie~~~D~~~g----Y~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~---~g~lhr~w~ 75 (139)
T TIGR02284 3 HSLNDLIEISIDGKDG----FEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSM---VGSLHQFWG 75 (139)
T ss_pred HHHHHHHHHcccHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcH---HHHHHHHHH
Confidence 3566777777776644 433333356889999999999999999999999999999988642222 2222222
Q ss_pred -HhhhcC---chhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 109 -GSALLG---PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 109 -~tal~G---~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
+.+++| +.+++.=.+-.|+.+.+-|++=|..= +. .++++++|.+.+.++..|+|.
T Consensus 76 ~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~-~l---~~~~r~~l~~q~~~i~~~~d~ 134 (139)
T TIGR02284 76 KIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQ-DT---PAAARDVALRQYPGVRACHDV 134 (139)
T ss_pred HHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcC-CC---ChHHHHHHHHHHHHHHHHHHH
Confidence 235556 77888888888999999999988652 11 256667799999999999985
No 25
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=96.51 E-value=0.031 Score=48.13 Aligned_cols=96 Identities=28% Similarity=0.293 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHH---HHHHHH-HHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy6685 67 IQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWN---VAGFIL-GAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS 142 (199)
Q Consensus 67 l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~---~~gf~L-Ga~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~ 142 (199)
+.+=.++|.-||-.|.++- .|+++.=+.- .+.|.. =++.-++.++++.-+++-+|+.-..=|.+-|+++.+
T Consensus 85 lleEaeNErmHLli~~~l~-----~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~ 159 (207)
T PF01786_consen 85 LLEEAENERMHLLIFEELG-----KPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDE 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3344788999999999754 4665433321 112222 245677889999999999999999999999988754
Q ss_pred CC----------------cc-cHHHHHHHHHHHHHHHhhHHh
Q psy6685 143 DP----------------AA-NRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 143 ~d----------------~~-~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.. |+ ...|+++|..+|+||.+|+|.
T Consensus 160 g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~v 201 (207)
T PF01786_consen 160 GKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDV 201 (207)
T ss_pred CCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHh
Confidence 21 12 457999999999999999986
No 26
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.21 E-value=0.3 Score=38.71 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CCchhhHHHHHHHHHHHhhhcCch
Q psy6685 44 ELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP-------TALLPFWNVAGFILGAGSALLGPK 116 (199)
Q Consensus 44 E~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~Rp-------S~L~PlW~~~gf~LGa~tal~G~~ 116 (199)
|.-|-..|...+--.+ .++........|++|...+..++..+++.- +.+.|.. +-=....+.....
T Consensus 12 Ek~a~~~Y~~~~~k~~---~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~----~~~l~~~~~~s~~ 84 (135)
T cd01048 12 EKLARDVYLALYEKFG---GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQ----YNQLVEQGPKSLQ 84 (135)
T ss_pred HHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccchh----HHHHHHhccccHH
Confidence 5667778887776654 345577788999999999999999888632 2222222 1111235556667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhHh
Q psy6685 117 GAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 170 (199)
Q Consensus 117 ~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~~ 170 (199)
.++-.-..+|..=-..|++=+..-. | ++++.++..+++.|.+|+.-+..
T Consensus 85 ~al~~g~~~E~~~i~~ye~~~~~~~--d---~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 85 DALEVGVLIEELDIADYDRLLERTQ--N---PDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777888888899998886653 3 77888899999999999987654
No 27
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.14 E-value=0.012 Score=47.02 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=48.9
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELI 85 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l 85 (199)
+..+||.|=..|..|+..|..++....++.++..+.....+|+.|+.+|.++|
T Consensus 102 ~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 102 IKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55599999999999999999999988899999999999999999999998764
No 28
>PRK10635 bacterioferritin; Provisional
Probab=96.13 E-value=0.0095 Score=48.80 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=51.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRK 87 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~ 87 (199)
+-+..+++.|.+.|..|+..|+=-+..+. +...+.++++++++|.+|+.|+++.+..
T Consensus 81 ~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~ 140 (158)
T PRK10635 81 EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDL 140 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998888754 5678899999999999999999999865
No 29
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.01 E-value=0.023 Score=46.47 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=53.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
-+..+|+-|-++|.+|...|.=++-...+|.++..+......|..|...|.+.|.+.
T Consensus 99 d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 99 NLVADLRSNIAAESRARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999999999999999999865
No 30
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.55 E-value=0.19 Score=52.01 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=91.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHHH
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLP-FWNVAGFILGAG 109 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~P-lW~~~gf~LGa~ 109 (199)
.....+|+.---=|..+...|.-.+.-++++.++.+..+++++|.+|..+|.+++.+. -|..-.- .|....+..+..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 936 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETSDPVLKELFLKFAGMEQEHMATLARRYHAA--APSPTEGFKIERAAIMAGVK 936 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCcccccccchhhhhhhhc
Confidence 4455677777777999999999999888899999999999999999999999998642 1210000 011112222222
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 110 SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 110 tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
.......-++-.-...|+.--+.|.+-...-. |+ .+.++.+.+|-++|.+|...
T Consensus 937 ~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~--d~--e~~k~l~~~LA~EEk~Hl~~ 990 (1006)
T PRK12775 937 GRPDDPGNLFRIAIEFERRAVKFFKERVAETP--DG--SVERQLYKELAAEEREHVAL 990 (1006)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhhCC--Ch--HHHHHHHHHHHHHHHHHHHH
Confidence 22333455777778888888999987765542 32 22456699999999999865
No 31
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=95.38 E-value=0.49 Score=36.76 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=81.1
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHh
Q psy6685 34 DEIIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGS 110 (199)
Q Consensus 34 ~rilRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~t 110 (199)
...|+---.||.-|...|.....+++. +.+...+.....+|..|-..|-+.+... |
T Consensus 3 ~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i---~------------------ 61 (123)
T cd01046 3 EEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKV---S------------------ 61 (123)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---c------------------
Confidence 345666678999999999999999874 4677889999999999999999865221 1
Q ss_pred hhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 111 ALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 111 al~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
-.-.-.+-....-|..+.+.|++=++.-... .+......++.+.++|.+|.+.
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~e--gd~~~~~~~~~~~~~E~~H~~~ 114 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAE--GLDEAHDFFHEAAKDEARHGKM 114 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHH
Confidence 1124556666777888888888766555433 2355556699999999999875
No 32
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.34 E-value=0.048 Score=42.62 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=48.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVL--GNSSVAPKIQEMWDQEKAHKAKFEELI 85 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~--~~~~~~~~l~~~~~~E~~HL~~f~~~l 85 (199)
.-+..+++.+-..|..+..-|+.....+ +++.+..++.++..+|.+|+.||+++|
T Consensus 92 ~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 92 PDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456899999999999999999999877 566778999999999999999999875
No 33
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=95.02 E-value=1 Score=39.44 Aligned_cols=124 Identities=22% Similarity=0.226 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCCchhhHHHH-HHHHHHHhhhcCchh
Q psy6685 42 AGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHK---AKFEELIRKYRVRPTALLPFWNVA-GFILGAGSALLGPKG 117 (199)
Q Consensus 42 AGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL---~~f~~~l~~~~~RpS~L~PlW~~~-gf~LGa~tal~G~~~ 117 (199)
.||-==+.-++.-.--+++|.+++.++.+..||..|- ..+++.+.+.|.- +.|+.... ....+.+.-..+.+.
T Consensus 38 ~GE~ffi~svr~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~G~~---~~~~~~~~~~~~~~~l~~~~~~~~ 114 (253)
T PF10118_consen 38 EGERFFIRSVRRARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQGYD---VRPFLEKMEKLFLKFLEKRLSLKF 114 (253)
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHHHhhhcCHHH
Confidence 3663333333333333488999999999999999885 4688888888764 56644333 334455555699999
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhHh
Q psy6685 118 AMACTVAVESV---IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 170 (199)
Q Consensus 118 ~ma~t~aVE~~---V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~~ 170 (199)
-+|+|+|+|.. +.+-+=++-..+ . +..++.+++.+.==-.||.||+..|-+
T Consensus 115 ~La~taalEH~TA~la~~~L~~~~~~-~-~~adp~~~~Lw~WHa~EE~EHksVAfD 168 (253)
T PF10118_consen 115 QLAYTAALEHFTAVLAEWLLNNPELL-F-AGADPEMRDLWRWHAAEEVEHKSVAFD 168 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhh-h-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999842 112111111111 0 113466666677777899999998854
No 34
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=94.77 E-value=0.72 Score=37.16 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch---hhHHHHHHHHHHHhhhc
Q psy6685 42 AGELGADRIYAGQMAVLGN-----SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFILGAGSALL 113 (199)
Q Consensus 42 AGE~gA~~IY~GQ~~v~~~-----~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~ 113 (199)
..|+.|...|-.....+.+ +.+..+++...++|.+|-..|-+.+..+|.+|.+-. |. -.-.-
T Consensus 13 ~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~----------~~~~~ 82 (161)
T cd01056 13 NLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPE----------KDEWG 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCC----------CcccC
Confidence 4689999999999998763 456788999999999999999999999999998743 21 00112
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcccHHHHHHHHH-HHHHHHhhHHhh
Q psy6685 114 GPKGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHK-FRDEEQEHHDTG 168 (199)
Q Consensus 114 G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~-~d~~~~~L~~~i~~-~r~DE~eH~d~A 168 (199)
+..-++...-+.|..|.+.|++=++.-.. .| ....+-|+. |-+|+.+|.+..
T Consensus 83 ~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D---~~t~~fl~~~fl~eQ~e~~~~~ 136 (161)
T cd01056 83 SGLEALELALDLEKLVNQSLLDLHKLASEHND---PHLADFLESEFLEEQVESIKKL 136 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCC---HhHHHHHHHHhhHHHHHHHHHH
Confidence 34566777888999999999996644333 45 444455887 999999988764
No 35
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=94.75 E-value=1.9 Score=35.11 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=89.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch-hhH-HHHHHHHH
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL-PFW-NVAGFILG 107 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~-PlW-~~~gf~LG 107 (199)
+.....-||==|+.|..+...+..+...+.+|.++..++++.++...|..++++.+..+|..||-.. |.- .+.+-+-+
T Consensus 3 ~~~~~~~L~d~y~aE~q~~~~l~~~~~~a~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~ 82 (159)
T PF05974_consen 3 RDLFIDELRDLYSAEKQLLKALPKLAEAASSPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQE 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHH
Confidence 3455667788899999999999999999999999999999999999999999999999999999876 433 33333333
Q ss_pred HHhhhcCchhhhHHHHHHHHHHHHHHH-----HHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 108 AGSALLGPKGAMACTVAVESVIVDHYN-----EQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 108 a~tal~G~~~~ma~t~aVE~~V~~Hy~-----~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
++....++....-...-.=-+..+||. .-+.--...+ .++..+.+++..+||.+..+.
T Consensus 83 ~~~~~~~d~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG--~~e~a~lL~~~L~EE~~~~~~ 145 (159)
T PF05974_consen 83 LIEEFAEDPAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLG--DEEAAQLLEQNLDEEEAADEK 145 (159)
T ss_dssp HHHT-S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 444434554332222111223334443 3222111222 256667799999999887664
No 36
>PRK10304 ferritin; Provisional
Probab=94.72 E-value=0.67 Score=38.14 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch---hhHHHHHHHHHHHhhhcCch
Q psy6685 43 GELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFILGAGSALLGPK 116 (199)
Q Consensus 43 GE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~G~~ 116 (199)
-|+.|...|-.+...+.+ +.+...+.....+|.+|-..|-++|..+|.+|.+-. |.=. .-.-.
T Consensus 16 ~El~As~~Yl~ma~~~~~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~-----------~~s~~ 84 (165)
T PRK10304 16 LELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAE-----------YSSLD 84 (165)
T ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccc-----------cCCHH
Confidence 599999999999998864 456678888899999999999999999999998643 3211 11224
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHH---HHhhHHh
Q psy6685 117 GAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDE---EQEHHDT 167 (199)
Q Consensus 117 ~~ma~t~aVE~~V~~Hy~~QL~~L~-~~d~~~~~L~~~i~~~r~D---E~eH~d~ 167 (199)
..+-+.-+-|..|...|++=+..-. ..|..+..+ |..|-+| |..|.+.
T Consensus 85 e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~f---l~~fl~EQveEe~~~~~ 136 (165)
T PRK10304 85 ELFQETYKHEQLITQKINELAHAAMTNQDYPTFNF---LQWYVSEQHEEEKLFKS 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHH---HHHHHHHHHHHHHHHHH
Confidence 5677778889999999888664332 245455555 7778777 7777765
No 37
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=94.20 E-value=0.16 Score=38.04 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=48.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 84 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~ 84 (199)
.-...+|+..=-+|..++..|.-.+....++.++..+.++.++|..|..+++++
T Consensus 85 ~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 85 MDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344668888889999999999999988888899999999999999999999875
No 38
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=93.62 E-value=0.21 Score=41.39 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 27 KRVTRQLDEIIRVDHAGELGADRIYAGQMAV--LGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 27 ~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v--~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
|+...-++.+|+|-=+.|.||++=|.---.. -++|.+-.+.+..+.+|.+|..||-++|.+.
T Consensus 99 Pedp~D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~~ 162 (172)
T COG2406 99 PEDPYDIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYELAEAILREEIEHRTWFLELLGKE 162 (172)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4445558999999999999999999875443 3578888999999999999999999999774
No 39
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=93.23 E-value=1.3 Score=34.35 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=84.4
Q ss_pred HhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHh-hh
Q psy6685 37 IRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGS-AL 112 (199)
Q Consensus 37 lRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~t-al 112 (199)
|....|-+..+.--|+..-+..+.+ .+.+++.+..++|.+|...+-+++..+|..|..-..-+---+. +.-.. +-
T Consensus 3 Ln~~lA~~~~~~~~~~~~HW~v~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~-l~~~~~~~ 81 (139)
T cd01043 3 LNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELST-IKEEPAGV 81 (139)
T ss_pred HHHHHHHHHHHHHHHhCCCcCccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCC-CCCCCCCC
Confidence 4455566666777777776766655 4578899999999999999999999999999875433222111 11111 22
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHHHHhhH
Q psy6685 113 LGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHH 165 (199)
Q Consensus 113 ~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~-~~d~~~~~L~~~i~~~r~DE~eH~ 165 (199)
...+-.+....+.|+.+...|.+-+..-. ..|+.+.++ +..+-.++..|.
T Consensus 82 ~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~l---l~~il~~~ek~~ 132 (139)
T cd01043 82 LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADL---LTEIIRELEKQA 132 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHH
Confidence 23345566777778888888888887665 346555544 777777776664
No 40
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=92.21 E-value=0.27 Score=37.00 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhh
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSA 111 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ta 111 (199)
.+..+++.+|-|. ..|.-=+.-++++.++..++++..+-..|...+.+.+.++|..|.--..++....=+.-.+.+
T Consensus 5 ~Ln~Ll~~~~d~~----~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~ 80 (111)
T PF09537_consen 5 ALNDLLKGLHDGI----EGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKS 80 (111)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHH
Confidence 4556666665554 556665656678999999999999999999999999999999998887777655554444444
Q ss_pred -hcCch--hhhHHHHHHHHHHHHHHHHHH
Q psy6685 112 -LLGPK--GAMACTVAVESVIVDHYNEQL 137 (199)
Q Consensus 112 -l~G~~--~~ma~t~aVE~~V~~Hy~~QL 137 (199)
+.|+. +.+.=....|+.+.+-|++=|
T Consensus 81 ~~~~~d~~aiL~~~~~gE~~~~~~y~~aL 109 (111)
T PF09537_consen 81 ALGGDDDEAILEECERGEDMALEAYEDAL 109 (111)
T ss_dssp S-----H----------------------
T ss_pred HhcCCCccchhhhhhhhhhhhhhhccccc
Confidence 44443 567777777777777777655
No 41
>PF13668 Ferritin_2: Ferritin-like domain
Probab=92.09 E-value=0.42 Score=37.12 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=48.7
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRK 87 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~ 87 (199)
...+++.--.-|..+...|.|+.....+++++..+..+...|..|..|++.+|.+
T Consensus 83 ~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 83 DASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456666667799999999999999999999999999999999999999998854
No 42
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=91.85 E-value=0.62 Score=33.04 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=45.9
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6685 34 DEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 84 (199)
Q Consensus 34 ~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~ 84 (199)
..++.....+|..+...|......+.++.++..+..+...|+.|...+.+.
T Consensus 79 ~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 79 AEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777799999999999999988888999999999999999999998875
No 43
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=91.67 E-value=0.65 Score=34.75 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=50.2
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 84 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~ 84 (199)
-+..+++..--+|.-+...|.-++....++.++..+..+..+|..|...|.++
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999999999999999999886
No 44
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=90.33 E-value=5.8 Score=32.01 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch---hhHHHHHHHHHHHhhhc
Q psy6685 42 AGELGADRIYAGQMAVL-----GNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFILGAGSALL 113 (199)
Q Consensus 42 AGE~gA~~IY~GQ~~v~-----~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~ 113 (199)
.-|+.|...|-.....+ +-+.+...+....++|..|-..+-+.|..+|.+|.+-. |- ...| -
T Consensus 13 ~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~--~~~~--------~ 82 (160)
T cd00904 13 NLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPP--SDEW--------G 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCc--cccc--------C
Confidence 46999999999999988 34567788899999999999999999999999988643 21 0000 0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHH-HHHHHHhhH
Q psy6685 114 GPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHK-FRDEEQEHH 165 (199)
Q Consensus 114 G~~~~ma~t~aVE~~V~~Hy~~QL~~L~-~~d~~~~~L~~~i~~-~r~DE~eH~ 165 (199)
...-++-..-+.|..|.+.|++-...-. ..|. ...+-|+. |-+|..+--
T Consensus 83 ~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~---~t~~fl~~~fi~eQ~ee~ 133 (160)
T cd00904 83 GTLDAMEAALKLEKFVNQALLDLHELASEEKDP---HLCDFLESHFLDEQVKEI 133 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHhhchhhHHHHHHH
Confidence 1234677778889999998887765332 3453 33344666 666555443
No 45
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=89.90 E-value=0.74 Score=35.21 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=50.7
Q ss_pred HhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHH
Q psy6685 37 IRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNV 101 (199)
Q Consensus 37 lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~ 101 (199)
+|..-.-|+-|...|.--+.+.++++++..+++..++|.+|.+..-++|..+ .|-|..
T Consensus 22 a~~SLiEEiEA~~wY~qR~~~tKD~~~r~ImehnrdeE~eHa~mlLEwlrR~-------~p~wd~ 79 (103)
T COG3461 22 ARQSLIEEIEAMMWYDQRADATKDEDLRAIMEHNRDEEKEHAAMLLEWLRRH-------DPAWDA 79 (103)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHcccHHHHHHHHHHHHHHHc-------CchHHH
Confidence 3556668999999999888889999999999999999999999999999887 577754
No 46
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=89.35 E-value=5.5 Score=35.04 Aligned_cols=138 Identities=16% Similarity=0.105 Sum_probs=81.0
Q ss_pred CCHHHHHHHHH-----HHhhhchhHHHHH-----HHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Q psy6685 25 HQKRVTRQLDE-----IIRVDHAGELGAD-----RIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR----V 90 (199)
Q Consensus 25 l~~~~~~~i~r-----ilRVdHAGE~gA~-----~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~----~ 90 (199)
|+++++..+.+ ++...=.+|.+.+ .|++++...-...+.+..+.+...+|..|-..|.+.+.+.+ .
T Consensus 66 l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l 145 (304)
T PF11583_consen 66 LSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGL 145 (304)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 55566665543 4555556787777 67777665433445667777889999999999999998775 2
Q ss_pred CCCCchhhHHHHHHHHHHHhhhcCc----hhhhHHHHHHHHHHHHHHHHHHHHhhcCCc-ccHHHHHHHHHHHHHHHhhH
Q psy6685 91 RPTALLPFWNVAGFILGAGSALLGP----KGAMACTVAVESVIVDHYNEQLRALMSDPA-ANRELMDVIHKFRDEEQEHH 165 (199)
Q Consensus 91 RpS~L~PlW~~~gf~LGa~tal~G~----~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~-~~~~L~~~i~~~r~DE~eH~ 165 (199)
.| .|.-+.....+..+...++. -..++++-..|+.|+ +|+..+. .|+ -.+-++.+.+--..||..|.
T Consensus 146 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~-~~~~~~~----~D~~iqP~~r~v~~iH~~DEaRHi 217 (304)
T PF11583_consen 146 AP---LPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID-AYQREIA----RDETIQPLVRQVMRIHVRDEARHI 217 (304)
T ss_dssp ------S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH-HHHHHHH----T-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred cc---CCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HHHHHhh----cCCCCChHHHHHHHHHHHHHHHHH
Confidence 22 22223333333333344443 345666666676655 6666552 233 23555566666678999999
Q ss_pred HhhHh
Q psy6685 166 DTGLE 170 (199)
Q Consensus 166 d~A~~ 170 (199)
..|.+
T Consensus 218 ~f~~~ 222 (304)
T PF11583_consen 218 AFARE 222 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 47
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=89.31 E-value=1.1 Score=35.81 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEELIRK 87 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~HL~~f~~~l~~ 87 (199)
-+..+++.+-..|.++..-|+..+..+ +++.+..+++.+..+|.+|+.+|++.+..
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~ 140 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLEL 140 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999998755 46678899999999999999999999864
No 48
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=88.56 E-value=1.2 Score=34.60 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=47.4
Q ss_pred HHHHHHHhhhchhHHH-HHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 31 RQLDEIIRVDHAGELG-ADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 31 ~~i~rilRVdHAGE~g-A~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
.-+..+|+.+-.||.. +...|.-=..++. +.....+++.++..|..|..||+..|..+
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALENL 133 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999997 6677776666654 45677899999999999999999998753
No 49
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=87.95 E-value=1.8 Score=33.86 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
-+..+|+-+...|..+...|+....++ +++.+..+++....+|++|..+|++.+...
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~ 140 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLI 140 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999998876 366788999999999999999999998664
No 50
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=87.25 E-value=3 Score=34.86 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh----hHhCCCCCChhHHHHH
Q psy6685 126 ESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT----GLEHGAEQAPFYKLMT 183 (199)
Q Consensus 126 E~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~----A~~~ga~~ap~~~~l~ 183 (199)
|.--..=|..|+.-+.. + +.+...|++|.++|.+|... ..+.+..++.+.++|.
T Consensus 14 E~~A~~iY~gQ~~~~~~-~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~ 71 (172)
T PF03232_consen 14 EVGAVRIYRGQLAVARR-D---PELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWY 71 (172)
T ss_pred HHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHH
Confidence 44445569999987764 4 66777799999999999965 4567778865555555
No 51
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=85.45 E-value=2.7 Score=32.36 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=38.6
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy6685 36 IIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIR 86 (199)
Q Consensus 36 ilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~ 86 (199)
+++..=.+|..|...|..+... ++.+.++..+|..|...+.+++.
T Consensus 80 ~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 80 VLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555557999999999999876 57889999999999999998875
No 52
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=85.13 E-value=2.5 Score=35.12 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=48.9
Q ss_pred HhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHH
Q psy6685 37 IRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNV 101 (199)
Q Consensus 37 lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~ 101 (199)
|=..-+=|.-...=|+.|+..+. ++.++..|++|.++|.+|...= .+.+..++.+.|+|+.
T Consensus 87 ~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A----~~~ga~~a~~~~~~~~ 150 (165)
T cd01042 87 MACTAAVETVVEEHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIA----EELGAEKAPLYALLKA 150 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCcCcchHHHHH
Confidence 55666778888889999999887 6778899999999999998654 4557778777777754
No 53
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=84.84 E-value=22 Score=29.71 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCchhhHHHHHHH
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP-TALLPFWNVAGFI 105 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~Rp-S~L~PlW~~~gf~ 105 (199)
++.+-.+|=.+-|.|.-+-.-|.=-...++ ....+.+++++..+-..|...+-.+|.++++.| --+.-||.++
T Consensus 15 ~~kli~~Llka~AaE~tt~YYYtilr~~l~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dIS--- 91 (172)
T COG2406 15 KDKLIELLLKAAAAEWTTYYYYTILRYALKGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDIS--- 91 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhc---
Confidence 445555566788999988888876555444 224567777888888899999999999999875 5578899987
Q ss_pred HHHHhhhcCchhh-----hHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhHhCC
Q psy6685 106 LGAGSALLGPKGA-----MACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHG 172 (199)
Q Consensus 106 LGa~tal~G~~~~-----ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~~~g 172 (199)
|.-.+-+..++. +....+-|+--.+-|.+-.+---..||..-+| -+.+-.||.+|+..=++.-
T Consensus 92 -gC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeL---a~~IL~eEi~hr~~~~~ll 159 (172)
T COG2406 92 -GCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYEL---AEAILREEIEHRTWFLELL 159 (172)
T ss_pred -CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHH---HHHHHHHHHHHHHHHHHHh
Confidence 456777776553 55566667777788887665555678777777 5667789999998766643
No 54
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=84.83 E-value=2.7 Score=32.60 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=49.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
.-+..++..+..||.....-|..=..+++ +..+..++....+.|..|..+++.+|..+
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667888899999998888987777775 55678999999999999999999998764
No 55
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=84.11 E-value=17 Score=32.19 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhh-CC-C-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc---hhhHHHHHHHHHHHhhhcCchh
Q psy6685 44 ELGADRIYAGQMAVL-GN-S-SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL---LPFWNVAGFILGAGSALLGPKG 117 (199)
Q Consensus 44 E~gA~~IY~GQ~~v~-~~-~-~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L---~PlW~~~gf~LGa~tal~G~~~ 117 (199)
|+-|+.++-=-+.-+ ++ | ....-.-+.+.+|..|..+++++|.++|++-.=| +-||..+--.-. .++.+=+
T Consensus 78 E~~AIdLa~Da~~RF~~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~~---dl~~R~A 154 (253)
T PF04305_consen 78 ELNAIDLALDAIYRFHPNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTAH---DLLARMA 154 (253)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhcc---CHHHHHH
Confidence 554444433333333 32 2 3445566788999999999999999999876543 445654411100 1111111
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 118 AMA-CTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 118 ~ma-~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
.+- +.+|--=-+...+-+-++.. .| .+..++++.+..||+.|=..+
T Consensus 155 ~vp~~~EArGLD~~p~~~~k~~~~--gD---~~sa~iL~~I~~DEi~HV~~G 201 (253)
T PF04305_consen 155 LVPRVLEARGLDVTPFIIEKFRSA--GD---EESAAILEIILRDEIGHVAIG 201 (253)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHC--CC---HHHHHHHHHHHHHHHHHHHhh
Confidence 111 11111111122333333332 23 344456999999999998886
No 56
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=81.76 E-value=27 Score=28.43 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=81.2
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch-hhHH-HHHHHHHHHhh
Q psy6685 34 DEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL-PFWN-VAGFILGAGSA 111 (199)
Q Consensus 34 ~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~-PlW~-~~gf~LGa~ta 111 (199)
-.-||=-|+.|--+...-.-+...+.+|.++..++++..+=..|....++.+..+|..||-.- +.-. +.+-+-+++..
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~ 84 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAKAATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEE 84 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhc
Confidence 345677788888888888888888889999999999999999999999999999999999876 5432 22233333333
Q ss_pred hcCchhhhHHHHHHHHHHHHHHHHH----HHHhhcCCcccHHHHHHHHHHHHHHHh
Q psy6685 112 LLGPKGAMACTVAVESVIVDHYNEQ----LRALMSDPAANRELMDVIHKFRDEEQE 163 (199)
Q Consensus 112 l~G~~~~ma~t~aVE~~V~~Hy~~Q----L~~L~~~d~~~~~L~~~i~~~r~DE~e 163 (199)
. ++..+.=..--.=-+..+||.=- |..+-.. ....+..+.|++.-++|..
T Consensus 85 ~-~~~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~-lG~~e~a~lL~~~L~EE~~ 138 (147)
T cd07909 85 T-GDSAVLDAALIAAAQKVEHYEIAGYGTLRALAKL-LGLDDAADLLQETLDEEKA 138 (147)
T ss_pred c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence 3 22222211111233445676532 1111000 0124455568888777753
No 57
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=80.75 E-value=29 Score=28.29 Aligned_cols=74 Identities=11% Similarity=0.004 Sum_probs=65.1
Q ss_pred cCCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6685 21 VRNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSS---VAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA 94 (199)
Q Consensus 21 ~~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~---~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~ 94 (199)
.+..++++.+..+..+|-...|-++....-|+.--+..+.+. +.+++.+..+++.+|.....++|...|..|.-
T Consensus 11 ~~~~l~~~~~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~ 87 (162)
T PRK09448 11 TRNDVPDSEKKATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALG 87 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCC
Confidence 345678888899999999999999999999998888887664 57889999999999999999999999998865
No 58
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=79.29 E-value=8.8 Score=28.27 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCC----CchhhHHHHHHHH-HHHh--hhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy6685 73 QEKAHKAKFEELIRKYRVRPT----ALLPFWNVAGFIL-GAGS--ALLGPKGAMACTVAVESVIVDHYNEQLRALMSD 143 (199)
Q Consensus 73 ~E~~HL~~f~~~l~~~~~RpS----~L~PlW~~~gf~L-Ga~t--al~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~ 143 (199)
.|+.|-..|++.|...|+-+. .-.+.|....+.= .... .--....++|+..++|.++-..|...++.|...
T Consensus 14 ~~~~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~ 91 (106)
T PF14518_consen 14 PERSHPELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRL 91 (106)
T ss_dssp GGG-HHHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHc
Confidence 356799999999999998765 2223333222211 1111 123447889999999999999999888777654
No 59
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=79.06 E-value=15 Score=33.14 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=96.7
Q ss_pred hhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-----hhhHHH----------HH
Q psy6685 39 VDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL-----LPFWNV----------AG 103 (199)
Q Consensus 39 VdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L-----~PlW~~----------~g 103 (199)
----||+.|-.=|--|.+-.+++..+..+.....+|--|+......+..+..-- -. .|+-.. ..
T Consensus 30 GG~~GElsaamqYl~Q~fn~r~~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga-~~e~~~~~~l~~s~~~~~n~~h~~~ 108 (277)
T COG3546 30 GGAFGELSAAMQYLFQGFNVRDAKYKDLLMDIGTEELSHLEMVATMINLLNKGA-TGEGAEEAELYGSGLGGMNPHHISV 108 (277)
T ss_pred CCcchHHHHHHHHHHhhcccCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC-CCCCCcchhhHHhhccCCCchhhhh
Confidence 345699999999999999888888899999999999999999999987764322 22 444422 23
Q ss_pred HHHHHH-hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcC-------C-cccHHHHHHHHHHHHHHHhhHHh
Q psy6685 104 FILGAG-SALLGPKGAMACTVAVESVIVDHYNEQLRALMSD-------P-AANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 104 f~LGa~-tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~-------d-~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
..+|+. +--.|-.|.-+++.+.-..|.+-|..--.+-... + .+++.+++.|.=++.-|.-|...
T Consensus 109 ~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~ 181 (277)
T COG3546 109 LLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNA 181 (277)
T ss_pred hccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHH
Confidence 344444 5567999999999999999988887665544321 0 13577888899999999999854
No 60
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=78.99 E-value=20 Score=33.41 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=99.1
Q ss_pred cCCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q psy6685 21 VRNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPF 98 (199)
Q Consensus 21 ~~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~Pl 98 (199)
+-..++++.|+..-..|=-.=..|...--+|.=-.--++ +|.+.+...-|...|..|-..+++-|.+.|+
T Consensus 72 ~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l-------- 143 (355)
T PRK13654 72 DWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGL-------- 143 (355)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc--------
Confidence 333578888888888888889999999999998877776 8899999999999999999999999999986
Q ss_pred HHHHHHHHHHHhh-----hcCchhhhHHHHHHHHH-------HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHH
Q psy6685 99 WNVAGFILGAGSA-----LLGPKGAMACTVAVESV-------IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHD 166 (199)
Q Consensus 99 W~~~gf~LGa~ta-----l~G~~~~ma~t~aVE~~-------V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d 166 (199)
+.=||.+|. .+.+|+++-.|-=-|+- |-.|++.| |+. .--.|-+-.+.-+.||-.|.|
T Consensus 144 ----~lDLgfLtk~k~YTfF~PkfIfYatYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~Fe~WCqDEnRHGd 213 (355)
T PRK13654 144 ----SLDLGFLTKKKKYTFFPPKFIFYATYLSEKIGYWRYITIYRHLEKH----PEH--RFHPIFKFFENWCQDENRHGD 213 (355)
T ss_pred ----cccchhhccCCceeeeCcceeeehhHhHhhhhHHHHHHHHHHHHhC----ccc--ccCchHHHHHHHhcccchhHH
Confidence 455666664 35566666666555552 44444433 111 335677889999999999998
Q ss_pred h
Q psy6685 167 T 167 (199)
Q Consensus 167 ~ 167 (199)
.
T Consensus 214 ~ 214 (355)
T PRK13654 214 F 214 (355)
T ss_pred H
Confidence 7
No 61
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=78.45 E-value=27 Score=32.44 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=99.6
Q ss_pred cCCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q psy6685 21 VRNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPF 98 (199)
Q Consensus 21 ~~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~Pl 98 (199)
+-..++++.|+..-..|=-.=+.|...--+|.--.--++ +|.+.+...-|...|..|-...++-|.+.|+
T Consensus 68 ~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l-------- 139 (351)
T CHL00185 68 SWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNL-------- 139 (351)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCc--------
Confidence 444578888888888888888999999999998777775 5899999999999999999999999999986
Q ss_pred HHHHHHHHHHHhh-----hcCchhhhHHHHHHHHH-------HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHH
Q psy6685 99 WNVAGFILGAGSA-----LLGPKGAMACTVAVESV-------IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHD 166 (199)
Q Consensus 99 W~~~gf~LGa~ta-----l~G~~~~ma~t~aVE~~-------V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d 166 (199)
+.=||.+|. .+.+|+++--|-=-|+- |-.|++.| |+. .--.|-+-.+.-+.||-.|.|
T Consensus 140 ----~lDLgfLtk~rkYTfF~PkfI~YAtYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~FE~WCqDEnRHGd 209 (351)
T CHL00185 140 ----SLDLGFLTKSRKYTFFSPKFIFYATYLSEKIGYWRYITIYRHLEKN----PEY--RIYPIFKFFESWCQDENRHGD 209 (351)
T ss_pred ----cccchhhccCCceeeecccceehhhHHHhhhhhhHHhHHHHHHHhC----ccc--ccchHHHHHHHHhcccchhHH
Confidence 455677664 45667777666666653 44444433 111 335677889999999999998
Q ss_pred h
Q psy6685 167 T 167 (199)
Q Consensus 167 ~ 167 (199)
.
T Consensus 210 f 210 (351)
T CHL00185 210 F 210 (351)
T ss_pred H
Confidence 7
No 62
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=77.98 E-value=33 Score=31.72 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=98.0
Q ss_pred cCCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q psy6685 21 VRNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLGN--SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPF 98 (199)
Q Consensus 21 ~~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~--~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~Pl 98 (199)
+--.++++.|+..-..|=-.=+.|...--+|.--.--+++ |.+.+...-|...|..|-...++-|.+.|+
T Consensus 62 ~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l-------- 133 (337)
T TIGR02029 62 SWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGL-------- 133 (337)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCc--------
Confidence 3345888888888888888889999999999988777764 458999999999999999999999999985
Q ss_pred HHHHHHHHHHHhh-----hcCchhhhHHHHHHHHH-------HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHH
Q psy6685 99 WNVAGFILGAGSA-----LLGPKGAMACTVAVESV-------IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHD 166 (199)
Q Consensus 99 W~~~gf~LGa~ta-----l~G~~~~ma~t~aVE~~-------V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d 166 (199)
+.=||.+|. .+.+++++-.|-=-|+- |-.|++.| |+. .--.|-+-.+.-+.||-.|.|
T Consensus 134 ----~lDLgfLtk~r~YTfF~PkfI~YAtYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~Fe~WCqDEnRHGd 203 (337)
T TIGR02029 134 ----ALDLGFLTKTRKYTFFRPKFIYYATYLSEKIGYWRYITIYRHLEEN----PEN--QFYPIFKYFESWCQDENRHGD 203 (337)
T ss_pred ----ccchhhhccCCceeeeccceeehhhHhHhhhhhHHHHHHHHHHHhC----ccc--ccchHHHHHHHHhcccchhHH
Confidence 455666664 35566666666655552 44444433 111 335677889999999999998
Q ss_pred h
Q psy6685 167 T 167 (199)
Q Consensus 167 ~ 167 (199)
.
T Consensus 204 ~ 204 (337)
T TIGR02029 204 A 204 (337)
T ss_pred H
Confidence 7
No 63
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=77.30 E-value=26 Score=32.19 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=97.2
Q ss_pred CCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhH
Q psy6685 22 RNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFW 99 (199)
Q Consensus 22 ~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW 99 (199)
--.++++.|+.--..|=-.=+.|...--+|+--.--++ +|.+.+...-|...|..|-...++-|.+.|+
T Consensus 53 ~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l--------- 123 (323)
T cd01047 53 ADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNL--------- 123 (323)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc---------
Confidence 34577888888888888888999999999998877775 4899999999999999999999999999875
Q ss_pred HHHHHHHHHHhh-----hcCchhhhHHHHHHHH-------HHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 100 NVAGFILGAGSA-----LLGPKGAMACTVAVES-------VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 100 ~~~gf~LGa~ta-----l~G~~~~ma~t~aVE~-------~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
+.=||.+|. ...+|+++-.|-=-|+ .|-.|++.| |+. .--.|-+-.+.-+.||-.|.|.
T Consensus 124 ---~lDLgfLtk~r~YTfF~PkfI~YatYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~Fe~WCqDEnRHGd~ 194 (323)
T cd01047 124 ---ALDLGFLTKTRKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLERN----PEN--QFHPIFKYFENWCQDENRHGDF 194 (323)
T ss_pred ---ccchhhhccCCceeeeCccceeehhHhhhhhhhHHHHHHHHHHHhC----ccc--ccchHHHHHHHHhcccchhhHH
Confidence 445666654 3556666666655555 244554433 111 3456778899999999999987
No 64
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=77.27 E-value=52 Score=29.69 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhc--Cch
Q psy6685 42 AGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKA---KFEELIRKYRVRPTALLPFWNVAGFILGAGSALL--GPK 116 (199)
Q Consensus 42 AGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~---~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~--G~~ 116 (199)
+||.==+..|+.-..-+++|.++..++-+..||.-|-+ -.++++...+ .|+-....+..+-+.+-. |..
T Consensus 50 ~GE~fFvd~v~a~r~r~sdp~L~~dv~gFI~QEamHSraH~~yn~~~~a~~------~p~~e~~~~r~erll~~~~~~~~ 123 (280)
T COG3687 50 AGERFFVDSVKAYRPRLSDPQLRDDVQGFIGQEAMHSRAHAGYNDRLDAQG------TPFAEQIAWRFERLLGESPRGSP 123 (280)
T ss_pred chhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHhhhcCCCCc
Confidence 69988788888777778899899999999888877754 3455665554 677777777766443322 222
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHhhHHhhHh
Q psy6685 117 --GAMACTVAVESVIVDHYNEQLRALMSDP--AANRELMDVIHKFRDEEQEHHDTGLE 170 (199)
Q Consensus 117 --~~ma~t~aVE~~V~~Hy~~QL~~L~~~d--~~~~~L~~~i~~~r~DE~eH~d~A~~ 170 (199)
--.++|+|+|..-. =..++|-+=++.+ -.++...+..+==-.||.||.+.|.+
T Consensus 124 r~~q~a~~aAlEHfTA-~ma~~il~~~~l~~~~~dP~m~~LwRWHa~EE~EHkaVAyD 180 (280)
T COG3687 124 RLEQVAIIAALEHFTA-VMAEWILEHPQLLLVGADPVMLDLWRWHAAEEVEHKAVAYD 180 (280)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCcchhccCCCcHHHHHHHHhhHHHhhhHHHHHH
Confidence 36678888885421 1122221111110 03355555577677899999999865
No 65
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.56 E-value=26 Score=30.41 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHH
Q psy6685 71 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANREL 150 (199)
Q Consensus 71 ~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L 150 (199)
..+|.+|+..+.....+.| .|-+.||.||++ +++|=++--..-..==+.-+--|+.-+..+...+| +.
T Consensus 4 ~~~E~qql~~ik~wwkeNG--------k~li~gviLg~~-~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~---~~ 71 (207)
T COG2976 4 YLEEQQQLEAIKDWWKENG--------KALIVGVILGLG-GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP---KS 71 (207)
T ss_pred hhhHHHHHHHHHHHHHHCC--------chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hh
Confidence 3589999999999999976 688899999865 56665544443333333556788888888877765 33
Q ss_pred HHHHHHHHHHH
Q psy6685 151 MDVIHKFRDEE 161 (199)
Q Consensus 151 ~~~i~~~r~DE 161 (199)
...+++|.+.-
T Consensus 72 ~~~~ekf~~~n 82 (207)
T COG2976 72 IAAAEKFVQAN 82 (207)
T ss_pred HHHHHHHHhhc
Confidence 44477776654
No 66
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=74.00 E-value=12 Score=27.92 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=49.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
-+..+|...=+.|......|+.....+ +++.+..++.++.++|.+|..++++.|...
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677778889999999999999888 577889999999999999999999998764
No 67
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=72.96 E-value=15 Score=28.86 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=50.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
-+..+|..+-.+|..+...|.-=..++. ++.+..+++++.++|.+|..++++.+...
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l 139 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKL 139 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999998888764 67788999999999999999999999754
No 68
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=72.67 E-value=21 Score=33.24 Aligned_cols=128 Identities=17% Similarity=0.191 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhH
Q psy6685 22 RNLHQKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFW 99 (199)
Q Consensus 22 ~~~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW 99 (199)
--.++++.|+..-..|=-.=.+|...--+|.--.--++ +|.+.+...-|...|..|-...++-|.+.|+
T Consensus 69 ~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l--------- 139 (357)
T PLN02508 69 ADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNL--------- 139 (357)
T ss_pred hhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCc---------
Confidence 34578888888888888888999999999988777675 5899999999999999999999999999985
Q ss_pred HHHHHHHHHHhh-----hcCchhhhHHHHHHHHH-------HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 100 NVAGFILGAGSA-----LLGPKGAMACTVAVESV-------IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 100 ~~~gf~LGa~ta-----l~G~~~~ma~t~aVE~~-------V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
+.=||.+|. .+-+|+++-.|-=-|+- |-.|++.| |+. .--.|-+-.+.-+.||-.|.|.
T Consensus 140 ---~lDLgfLtk~rkYTfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIFk~Fe~WCqDEnRHGd~ 210 (357)
T PLN02508 140 ---ALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLQAN----PDY--QLYPIFKYFENWCQDENRHGDF 210 (357)
T ss_pred ---cccchhhcccCceeeeCcceeehhhHhhhhhhhhhHhHHHHHHHhC----ccc--ccchHHHHHHHHhcccchhHHH
Confidence 456677764 45667777666666653 34444433 111 3456778899999999999987
No 69
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=72.67 E-value=4.5 Score=32.73 Aligned_cols=41 Identities=32% Similarity=0.527 Sum_probs=32.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Q psy6685 115 PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQ 162 (199)
Q Consensus 115 ~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~ 162 (199)
.++.++|-.++|..|.+||++- .|.+ ..+.++|++|=-|..
T Consensus 23 ~~aN~~Ck~aIE~aI~~~~~~~--~L~~-----~a~~~vie~fG~eR~ 63 (133)
T PF12960_consen 23 RKANIACKEAIEQAIREHFDGN--RLDP-----DAVKEVIEKFGYERV 63 (133)
T ss_pred HHhhHHHHHHHHHHHHHHcCCC--cCCH-----HHHHHHHHHHHHHHH
Confidence 8999999999999999999986 5541 445556888866654
No 70
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=70.16 E-value=63 Score=26.91 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=89.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSV---APKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGA 108 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~---~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa 108 (199)
.+-+.|=-.-.+|++|+.=|-=-..+.++... .....+-..+|..|-..+-+++--+..-|.+ .|+=.
T Consensus 6 ~Vi~~LN~~L~~EL~ainQYflHsrM~~~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnl-q~~~~-------- 76 (157)
T COG2193 6 KVIRLLNEALGLELAAINQYFLHSRMYKNWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNL-QDLGK-------- 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-ccccc--------
Confidence 34444444557999999999888888876654 4455566788999999999999999998886 22210
Q ss_pred HhhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 109 GSALLGP--KGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 109 ~tal~G~--~~~ma~t~aVE~~V~~Hy~~QL~~L~~-~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
=..|. +=.+.|--+.|.-+-+-|.+=|..... .|.-++++ ++.+-.||.||.|-
T Consensus 77 --l~iG~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl---~~~iL~deEEHid~ 133 (157)
T COG2193 77 --LRIGETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDL---LEEILADEEEHIDW 133 (157)
T ss_pred --cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH---HHHHHcchHHHHHH
Confidence 22344 345667777888888888888877765 46677777 88888888889875
No 71
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=69.51 E-value=14 Score=30.77 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRK 87 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~ 87 (199)
-.-+..++..|-++|+.|..-|+--++.+. +.-.+..+.+.+..|++|-.|+++.|.-
T Consensus 80 G~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~iL~deEEHid~LetqL~l 140 (157)
T COG2193 80 GETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEEILADEEEHIDWLETQLDL 140 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 455778999999999999999998888775 4456788888888888899999988743
No 72
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=66.86 E-value=69 Score=29.00 Aligned_cols=140 Identities=18% Similarity=0.137 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCch-------
Q psy6685 26 QKRVTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSV-APKIQEMWDQEKAHKAKFEELIRKYRVR-PTALL------- 96 (199)
Q Consensus 26 ~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~-~~~l~~~~~~E~~HL~~f~~~l~~~~~R-pS~L~------- 96 (199)
+|.-.+.+...+- -.-||+.|--=|--|.+..+++.. +..|.....+|.-|+......+..+--- |.-..
T Consensus 18 DP~~A~~LqeqlG-G~~GElsaamqYl~Q~~~~~~~~~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~ 96 (283)
T PF05067_consen 18 DPRFAKLLQEQLG-GPFGELSAAMQYLFQSFNMRGPEKYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGD 96 (283)
T ss_dssp -HHHHHHHCHHHH-STTSHHHHHHHHHHHHHH-SSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGG
T ss_pred CHHHHHHHHHHhc-CCcchHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccc
Confidence 3344444444432 456999999999999999998865 9999999999999999999888665321 21121
Q ss_pred hhH----------HHHHHHHHH-HhhhcCchhhhHHHHHHHHHHHHHHHHHH---------HHhhcCCcccHHHHHHHHH
Q psy6685 97 PFW----------NVAGFILGA-GSALLGPKGAMACTVAVESVIVDHYNEQL---------RALMSDPAANRELMDVIHK 156 (199)
Q Consensus 97 PlW----------~~~gf~LGa-~tal~G~~~~ma~t~aVE~~V~~Hy~~QL---------~~L~~~d~~~~~L~~~i~~ 156 (199)
|+. +...-++|+ .+.-.|..|+.+.+.+.-..|.+=+.+=- ..|.+. .+++.+++.|.=
T Consensus 97 p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~m-TdDpgvkd~L~F 175 (283)
T PF05067_consen 97 PLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEM-TDDPGVKDMLSF 175 (283)
T ss_dssp TTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHH
T ss_pred hHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHH
Confidence 211 111112222 34557889998888776666644333211 111111 123778888999
Q ss_pred HHHHHHhhHHh
Q psy6685 157 FRDEEQEHHDT 167 (199)
Q Consensus 157 ~r~DE~eH~d~ 167 (199)
++.-|.-|...
T Consensus 176 Ll~Re~vH~~~ 186 (283)
T PF05067_consen 176 LLAREIVHQQQ 186 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 73
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=66.75 E-value=21 Score=29.77 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6685 28 RVTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 88 (199)
Q Consensus 28 ~~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~ 88 (199)
.....|...|. +|.-+...|...+....++.++..++...++|..|+.++...+...
T Consensus 113 ~~~~~I~~a~~----~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 113 SYLEAIEAAME----AEKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 5999999999999999999999999999999999999999998775
No 74
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=64.70 E-value=15 Score=38.27 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCC
Q psy6685 34 DEIIRVDHAGELGADRIYAGQMAVLGNSS-VAPKIQEMWDQEKAHKAKFEELIRKYR-VRPTA 94 (199)
Q Consensus 34 ~rilRVdHAGE~gA~~IY~GQ~~v~~~~~-~~~~l~~~~~~E~~HL~~f~~~l~~~~-~RpS~ 94 (199)
..+||.----|--|.-+|..-+....++. .+.++.++.++|+.|+..+++++.++. .+|-+
T Consensus 943 ~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~~~~~~~ 1005 (1006)
T PRK12775 943 GNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREHVALLTTEFERWKQGKPGL 1005 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45777777889999999999998888875 589999999999999999999997653 34443
No 75
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=64.05 E-value=75 Score=25.51 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhcCchhhhHHHH
Q psy6685 44 ELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTV 123 (199)
Q Consensus 44 E~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~ma~t~ 123 (199)
.+-..+++.+=..+++++++++.++...+.=..|...+++.+.+.++ |-. +-|. -.=.---.+.++.|+..+-++.
T Consensus 29 ~~~~~~~~~~f~~~~~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~i-p~P--~~~~-~~~v~~~~~~lfsD~~~l~~~~ 104 (166)
T PF11553_consen 29 NYMSICLLQYFLQVAEDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGI-PVP--PGFP-ESDVTDSAPPLFSDKFMLFYIS 104 (166)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------GGGS-G--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCC--CCCc-ccccCCCCCCCCCcHHHHHHHH
Confidence 34566777777778899999999999999999999999999999987 222 2221 1112222455677777777777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhHhC
Q psy6685 124 AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEH 171 (199)
Q Consensus 124 aVE~~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~~~ 171 (199)
..=..--..|..-+..-.. .+|++...+|-.++.+-.+...+.
T Consensus 105 ~~~~~~~~~~~~al~~s~R-----~Dl~~~f~~~~~~~~~~~~~~~~l 147 (166)
T PF11553_consen 105 FMSQAGITNYGRALSSSVR-----NDLRAFFMKFLMEALELYDKIVKL 147 (166)
T ss_dssp HHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655433 447777888888888887765443
No 76
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=63.59 E-value=19 Score=30.16 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=49.8
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYR 89 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~ 89 (199)
...-|+-+-+||--|+..|.-=+.+++ -+.+....+....+|..|...+-..+.+.+
T Consensus 5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 5 TEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456788899999999999988777775 568889999999999999999999999875
No 77
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.03 E-value=44 Score=27.20 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcCchhhhHHHHHHHH---HHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHhhHh
Q psy6685 101 VAGFILGAGSALLGPKGAMACTVAVES---VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 170 (199)
Q Consensus 101 ~~gf~LGa~tal~G~~~~ma~t~aVE~---~V~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~A~~ 170 (199)
+.|.++|++.+-++++..=- -..|+. -+-..+++|=++|..+-..+.+|.+.|.+=-.+=.+|....-.
T Consensus 16 vvGi~IG~li~Rlt~~~~k~-q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~ss~ 87 (138)
T COG3105 16 VVGIIIGALIARLTNRKLKQ-QQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKSST 87 (138)
T ss_pred HHHHHHHHHHHHHcchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 56778888888888765432 112232 2345566777777666667889988888877778888766443
No 78
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=61.29 E-value=7.1 Score=35.24 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6685 29 VTRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRV 90 (199)
Q Consensus 29 ~~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~ 90 (199)
..--+...||.|=+.|-.|-..|.=-+-+..+|.+++.|.-.+..|.-|.+.|.+-|.+.+.
T Consensus 135 ~sGdl~aDL~~NiaAE~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~ 196 (283)
T PF05067_consen 135 ASGDLIADLRSNIAAEQRARLQYERLYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEELQE 196 (283)
T ss_dssp --S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456678999999999999999999999999999999999999999999999999977643
No 79
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=61.01 E-value=7.3 Score=33.52 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHHH
Q psy6685 44 ELGADRIYAGQMAVLGN--SSVAPKIQEMWDQEKAHKAKFEE 83 (199)
Q Consensus 44 E~gA~~IY~GQ~~v~~~--~~~~~~l~~~~~~E~~HL~~f~~ 83 (199)
|.---.=|.||+..+.+ ..++..|.+|.++|.+|++.--.
T Consensus 135 E~vIe~Hy~~ql~~L~~~d~~lr~~l~qfR~DE~eH~d~Ai~ 176 (204)
T COG2941 135 ETVIEKHYDGQLRELPNLDAELRAILAQFRDDELEHLDNAIA 176 (204)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344569999999874 46788999999999999987555
No 80
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=59.54 E-value=42 Score=28.58 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CchhhHH
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPT-ALLPFWN 100 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS-~L~PlW~ 100 (199)
+.-+..++=+==.||++|-.-+.-=...+.+-.-+-.|..|...|..|.....++|.++|+-|. .+.|+=.
T Consensus 4 ~~~v~~llg~lAy~eL~aF~rLa~da~~AP~l~~r~ala~mAaae~~hf~~L~~~l~~~G~d~~~am~pf~~ 75 (185)
T PF13794_consen 4 RAAVVDLLGVLAYGELAAFERLAEDARMAPTLADRIALARMAAAEFGHFERLEARLAERGVDPEEAMEPFVG 75 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-SSSTTHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444455555556777765444444433444455678889999999999999999999999886 5666643
No 81
>KOG4061|consensus
Probab=57.33 E-value=15 Score=31.61 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=48.5
Q ss_pred cCchhhhHHHHHHHHHH----------HHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh----hHhCCCCC---
Q psy6685 113 LGPKGAMACTVAVESVI----------VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT----GLEHGAEQ--- 175 (199)
Q Consensus 113 ~G~~~~ma~t~aVE~~V----------~~Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~----A~~~ga~~--- 175 (199)
.|.+.+-.--+.++++| +.=|..|+.-|...+ +-.+|+.|=|+|.+|+++ ++.+.-.+
T Consensus 37 ~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~~-----vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l 111 (217)
T KOG4061|consen 37 RGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGTS-----VGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL 111 (217)
T ss_pred CCcccCchhHHHHHHhheeccccccccchhhhchhhhhcCCC-----chhHHHHHHHHHHHHHHHHHHHHHHccCCchhh
Confidence 45555555566777777 456888887775432 556699999999999987 56666666
Q ss_pred ChhHHHHHHHHHHH
Q psy6685 176 APFYKLMTDVIKVG 189 (199)
Q Consensus 176 ap~~~~l~~~ik~g 189 (199)
.|++.+...+...|
T Consensus 112 ~P~w~vagfalGaG 125 (217)
T KOG4061|consen 112 TPLWNVAGFALGAG 125 (217)
T ss_pred hhHHHHHHHHhccc
Confidence 35555554444444
No 82
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=52.62 E-value=8.6 Score=31.58 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=32.5
Q ss_pred CCchhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHH
Q psy6685 93 TALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQL 137 (199)
Q Consensus 93 S~L~PlW~~~gf~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL 137 (199)
|+++|+-.+..|.+|-+--+---..-...-+.+..+|.+.|++++
T Consensus 74 sllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~q~~~q~~~~~ 118 (164)
T PF10624_consen 74 SLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQSQVNEQYDEDL 118 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHHHHhhhcCccc
Confidence 789999999999999876554333334445677777777777765
No 83
>PRK15022 ferritin-like protein; Provisional
Probab=49.86 E-value=54 Score=27.21 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6685 43 GELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA 94 (199)
Q Consensus 43 GE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~ 94 (199)
-|+-|-.+|-.=...+. -|....++....++|.+|-..|-+.+.++|.++.+
T Consensus 16 ~E~~aSy~YLsMa~~~~~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l 70 (167)
T PRK15022 16 LEFYASNLYLHLSEWCSEQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIV 70 (167)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceee
Confidence 47888888888777765 34667888899999999999999999999999876
No 84
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=49.66 E-value=21 Score=27.58 Aligned_cols=53 Identities=8% Similarity=0.007 Sum_probs=46.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6685 32 QLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEEL 84 (199)
Q Consensus 32 ~i~rilRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~HL~~f~~~ 84 (199)
-...+++.+-..|.++...|+.-+..+ +++.+.+.+.+....+.+|.-++++.
T Consensus 83 ~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a~ 138 (139)
T cd01043 83 SAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLTEIIRELEKQAWMLRAH 138 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999998876 47788899999999999999888764
No 85
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=48.37 E-value=75 Score=27.51 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhH
Q psy6685 44 ELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFW 99 (199)
Q Consensus 44 E~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW 99 (199)
|++..-.|=--+.-+++. .....|++..-+|.-|+.+...+|...|.+|.+-.|-|
T Consensus 8 E~atip~YL~a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~~~~~ 66 (227)
T PF12902_consen 8 ELATIPPYLTALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLTSPDF 66 (227)
T ss_dssp HHHHHHHHHHHHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccccC
Confidence 445555554444444533 36689999999999999999999999999999987766
No 86
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=45.51 E-value=47 Score=30.23 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy6685 99 WNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDP 144 (199)
Q Consensus 99 W~~~gf~LGa~tal~G~~~~ma~t~aVE~~V~~Hy~~QL~~L~~~d 144 (199)
-.+.|.+||+.+|.-| ..+--||.+....+..+..+|...+
T Consensus 130 LsaaG~GlgaaagvT~-----i~t~I~e~~~~~~~~~~a~~l~~~~ 170 (313)
T PF05461_consen 130 LSAAGIGLGAAAGVTS-----ISTSIVEHVSNKSARKEASELISTD 170 (313)
T ss_pred HHHhhhHHHHHhhhhH-----HHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 5555555555555544 3455677778888888888776544
No 87
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=45.38 E-value=17 Score=32.81 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=50.1
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6685 33 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR 89 (199)
Q Consensus 33 i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~ 89 (199)
+-.-+|.|-+-|.+|--.|.==..+..+|.+++.|...+..|.-|-..|.+-|....
T Consensus 134 liaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~f~kAL~~l~ 190 (277)
T COG3546 134 LIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNAFRKALESLE 190 (277)
T ss_pred cHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999988887777888999999999999999999999999997653
No 88
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=43.81 E-value=59 Score=25.52 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=47.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 84 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~ 84 (199)
.-....+|+-=..|.--+..|.-=+.-..+++++..+....+.|..|+.-|-.+
T Consensus 81 ~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 81 KSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677888889999999999988887888999999999999999999988765
No 89
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=42.07 E-value=2.6e+02 Score=25.14 Aligned_cols=103 Identities=9% Similarity=0.012 Sum_probs=66.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC----------CchhhHHHHHHHHH-HHhhhcCc--hhhhHHHHHHH
Q psy6685 61 SSVAPKIQEMWDQEKAHKAKFEELIRKYRV-RPT----------ALLPFWNVAGFILG-AGSALLGP--KGAMACTVAVE 126 (199)
Q Consensus 61 ~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~-RpS----------~L~PlW~~~gf~LG-a~tal~G~--~~~ma~t~aVE 126 (199)
+.++.-+.-..-.|..|.+.+.-+...+.. -|. .-.|.|...==.+. .+.. ++ +...++.-.+|
T Consensus 129 ~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp~Wq~~R~~~E~~~~~--~Dw~E~~va~nlv~e 206 (304)
T cd01058 129 TTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVT--YDWGEAFVAQNLVFD 206 (304)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCchhHHHHHHHHHHHhh--ccHHHHHHHHHHHHH
Confidence 344555555567788888887754433332 244 47899996533332 3222 44 77788888999
Q ss_pred HHHHHHHHHHHHHhhcC--CcccHHHHHHHHHHHHHHHhhHHhh
Q psy6685 127 SVIVDHYNEQLRALMSD--PAANRELMDVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 127 ~~V~~Hy~~QL~~L~~~--d~~~~~L~~~i~~~r~DE~eH~d~A 168 (199)
..+..=.-.++.++-.. |...+ -++..+..||.+|..-+
T Consensus 207 ~l~~~l~~~~~~~~Aa~nGD~~t~---~l~~s~q~d~~Rh~~~~ 247 (304)
T cd01058 207 PLVGELVRRELDRLAASNGDTLTP---LLTEFMLDDAQRHRRWT 247 (304)
T ss_pred HHHHHHHHHHHHHHHHHCCCchhH---HHHHHHHHHHHHHHHHH
Confidence 98888777777666432 32334 34899999999999775
No 90
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=37.31 E-value=68 Score=28.33 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCCcccHHHH-HHHHHHHHHHHhhHHhh
Q psy6685 129 IVDHYNEQLRALMSDPAANRELM-DVIHKFRDEEQEHHDTG 168 (199)
Q Consensus 129 V~~Hy~~QL~~L~~~d~~~~~L~-~~i~~~r~DE~eH~d~A 168 (199)
+.+||..|-.-|-.- -+++++ ++|..|++||.|-.+.|
T Consensus 133 LLRhLRHHSNLLAnI--gdP~VreqVLsAMqEeeeEEe~DA 171 (238)
T PF02084_consen 133 LLRHLRHHSNLLANI--GDPEVREQVLSAMQEEEEEEEQDA 171 (238)
T ss_pred HHHHHHHHHHHHhhc--CCHHHHHHHHHHHhhhHHHHHHHH
Confidence 468999998666432 124444 45889998877766554
No 91
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=31.74 E-value=1.7e+02 Score=19.85 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6685 43 GELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRV 90 (199)
Q Consensus 43 GE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~ 90 (199)
++-.+...|.-=+.=..+|.+++.+..++.++.++...+-+.+.++|-
T Consensus 12 ~~K~~~~~y~~a~~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 12 SEKAAARNYATAALECANPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555556555555679999999999999999988888888888774
No 92
>PRK10304 ferritin; Provisional
Probab=29.33 E-value=2.3e+02 Score=23.15 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHH---HHHHHHHHHHHHHhcC
Q psy6685 30 TRQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQ---EKAHKAKFEELIRKYR 89 (199)
Q Consensus 30 ~~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~---E~~HL~~f~~~l~~~~ 89 (199)
-.-+..++..+-+-|..+..-|.-=..++. +.....+++++.++ |..|..+..+.+...+
T Consensus 80 ~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 80 YSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334678888999999988888877666653 66778999999998 9999999999998765
No 93
>PF05163 DinB: DinB family; InterPro: IPR007837 This entry represents the DinB family, and includes DinB from Bacillus subtilis. DNA damage-inducible genes (dinA, dinB, and dinC) in Bacillus subtilis are coordinately regulated and together compose a global regulatory network that has been termed the SOS-like or SOB regulon [].; PDB: 3DKA_A 2QE9_A 3GOR_D 3DI5_A 2F22_A.
Probab=28.92 E-value=82 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q psy6685 62 SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPF 98 (199)
Q Consensus 62 ~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~Pl 98 (199)
.....|.++..++..|...+-..|.+.|+.|-.+.=+
T Consensus 121 ~~~~~L~h~~~H~~hHRGQi~~~Lr~~G~~pp~~d~~ 157 (168)
T PF05163_consen 121 SRAEILQHVINHETHHRGQISVLLRQLGIEPPSTDYI 157 (168)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHTT------SS-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHH
Confidence 3567899999999999999999999999987655433
No 94
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=28.45 E-value=2.2e+02 Score=23.92 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhh----cCc
Q psy6685 43 GELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL----LGP 115 (199)
Q Consensus 43 GE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal----~G~ 115 (199)
-|+=|-.+|-.=.+.+. -+....++...+.+|..|-..|-+-+.+.+.+|-+ |++.+- -+.
T Consensus 16 ~E~yas~lYl~maa~~~~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l------------~~I~~P~~~~~s~ 83 (167)
T COG1528 16 LEFYASNLYLQMAAWCSSESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPEL------------KAIEAPPNKFSSL 83 (167)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee------------cCcCCCccccCCH
Confidence 36667778877766665 45678899999999999999999999999999865 332221 122
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q psy6685 116 KGAMACTVAVESVIVDHYNE 135 (199)
Q Consensus 116 ~~~ma~t~aVE~~V~~Hy~~ 135 (199)
+-.+--|-..|..|..+.++
T Consensus 84 ~e~f~~tlehEq~vt~~I~~ 103 (167)
T COG1528 84 KELFEKTLEHEQKVTSSINE 103 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666665554
No 95
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=28.15 E-value=1.3e+02 Score=25.60 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHH
Q psy6685 60 NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFI 105 (199)
Q Consensus 60 ~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~~gf~ 105 (199)
++++...+-....+|-.|....-+.|.++|+.-..+.|-=|+.|..
T Consensus 47 ~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~ 92 (180)
T cd07910 47 KPELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLR 92 (180)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 3456666777789999999999999999999777777777777763
No 96
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=28.07 E-value=1.3e+02 Score=23.86 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6685 42 AGELGADRIYAGQMAVL-GNSSVAPKIQEMWDQEKAHKAKFEEL 84 (199)
Q Consensus 42 AGE~gA~~IY~GQ~~v~-~~~~~~~~l~~~~~~E~~HL~~f~~~ 84 (199)
-||-.++.-|+--+.-. -.++++..|.+....++.|+.|+..+
T Consensus 95 ~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~l 138 (139)
T TIGR02284 95 RGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRAL 138 (139)
T ss_pred HhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47777777777655433 24567778888888888888887653
No 97
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=27.95 E-value=2e+02 Score=22.92 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=45.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q psy6685 31 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQE-MWDQEKAHKAKFEELIRKYR 89 (199)
Q Consensus 31 ~~i~rilRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~-~~~~E~~HL~~f~~~l~~~~ 89 (199)
.-+..++..+-+-|.-+..-|.--...+. +..+..+++. +.+++.+|..++...+.+.+
T Consensus 82 ~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~ 144 (161)
T cd01056 82 GSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLK 144 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34667788888888766666665555543 6678899998 99999999999999987764
No 98
>COG5346 Predicted membrane protein [Function unknown]
Probab=26.00 E-value=65 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6685 61 SSVAPKIQEMWDQEKAHKAKFEELIRKYRV 90 (199)
Q Consensus 61 ~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~ 90 (199)
|...+.|.+|++.|+.|...+.........
T Consensus 52 pnt~~rimaMAekEQahrH~~~~k~~~~q~ 81 (136)
T COG5346 52 PNTLQRIMAMAEKEQAHRHAIDLKNLKIQR 81 (136)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344567899999999999888776654443
No 99
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=25.97 E-value=4.4e+02 Score=22.92 Aligned_cols=142 Identities=14% Similarity=0.047 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHhhhchhHHHHHHHHHHHHH---hhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCchh
Q psy6685 24 LHQKRVTRQLDEIIRVDHAGELGADRIYAGQMA---VLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP---TALLP 97 (199)
Q Consensus 24 ~l~~~~~~~i~rilRVdHAGE~gA~~IY~GQ~~---v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~Rp---S~L~P 97 (199)
.|++.+|..+.+++.-=-+||.....-+-.... ..+++..+-.+..+..+|..|-..+...+...+..+ ....+
T Consensus 38 ~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~ 117 (280)
T cd07911 38 QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTA 117 (280)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhh
Confidence 589999999999999988899644333334432 224566678899999999999999999999887644 34444
Q ss_pred hHHHHHHH-HHH-HhhhcCc----hhh---hHHHHHHHHHHHHHHHHH--HH-HhhcCCcccHHHHHHHHHHHHHHHhhH
Q psy6685 98 FWNVAGFI-LGA-GSALLGP----KGA---MACTVAVESVIVDHYNEQ--LR-ALMSDPAANRELMDVIHKFRDEEQEHH 165 (199)
Q Consensus 98 lW~~~gf~-LGa-~tal~G~----~~~---ma~t~aVE~~V~~Hy~~Q--L~-~L~~~d~~~~~L~~~i~~~r~DE~eH~ 165 (199)
.|....+- +.. ...+.-+ +.. +.+...+|-+. -|... +. -|...+ .-+.+.+.|+-+.-||.-|-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGil--f~sgF~~~~~~l~~~g-~m~g~~~~i~~I~RDE~~H~ 194 (280)
T cd07911 118 VYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVL--AETGYYAWRTICEKRG-ILPGMQEGIRRLGDDESRHI 194 (280)
T ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcC-CCcCHHHHHHHHHHHHHHHH
Confidence 44444321 100 1111111 111 11112344432 12222 11 122222 34666777999999999999
Q ss_pred Hhh
Q psy6685 166 DTG 168 (199)
Q Consensus 166 d~A 168 (199)
.-+
T Consensus 195 ~fg 197 (280)
T cd07911 195 AWG 197 (280)
T ss_pred HHH
Confidence 876
No 100
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.05 E-value=2.6e+02 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=17.5
Q ss_pred cCCCCCCchhhHHHHHHHHHHHhhhcC
Q psy6685 88 YRVRPTALLPFWNVAGFILGAGSALLG 114 (199)
Q Consensus 88 ~~~RpS~L~PlW~~~gf~LGa~tal~G 114 (199)
...||+.-.++|.+..+++|.+.=..|
T Consensus 33 ~~~~~~~r~~~~~~~~~v~gl~llv~G 59 (82)
T PF11239_consen 33 RPRRPSRRRRVLGVLLVVVGLALLVAG 59 (82)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 344566666788888888886544433
No 101
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=70 Score=24.60 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHHHHhhHHhhHh
Q psy6685 146 ANRELMDVIHKFRDEEQEHHDTGLE 170 (199)
Q Consensus 146 ~~~~L~~~i~~~r~DE~eH~d~A~~ 170 (199)
+++.++.+++.-||||.+|...-++
T Consensus 44 KD~~~r~ImehnrdeE~eHa~mlLE 68 (103)
T COG3461 44 KDEDLRAIMEHNRDEEKEHAAMLLE 68 (103)
T ss_pred ccHhHHHHHHHcccHHHHHHHHHHH
Confidence 4578888899999999999977655
No 102
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=23.83 E-value=55 Score=22.14 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhcCchh
Q psy6685 99 WNVAGFILGAGSALLGPKG 117 (199)
Q Consensus 99 W~~~gf~LGa~tal~G~~~ 117 (199)
|...|++-|+++.+.|++.
T Consensus 23 ~~~~G~~~G~~~~~~~~~~ 41 (62)
T PF02830_consen 23 WFTAGYLAGFFSALFGKEV 41 (62)
T ss_dssp HHHHHHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHHHHhCCce
Confidence 5789999999999999874
No 103
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.11 E-value=87 Score=20.96 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy6685 60 NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVR 91 (199)
Q Consensus 60 ~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~R 91 (199)
.|.....|-.|...|..|....++...+...+
T Consensus 13 ~Pg~aerI~~mae~eq~hR~~~e~~~l~~~~~ 44 (50)
T PF10097_consen 13 LPGAAERIFAMAEKEQEHRHELEKKALKSEIR 44 (50)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999999999999887665443
No 104
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=23.01 E-value=2.1e+02 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6685 44 ELGADRIYAGQMAVL--GNSSVAPKIQEMWDQEKAHKAKFEELIRK 87 (199)
Q Consensus 44 E~gA~~IY~GQ~~v~--~~~~~~~~l~~~~~~E~~HL~~f~~~l~~ 87 (199)
|.|..--|+-=.... ++|.++..+......|..|...|.+.+..
T Consensus 159 E~aT~v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~ 204 (297)
T cd01050 159 ELATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEA 204 (297)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455445566 77888899999999999999999998864
No 105
>PRK11677 hypothetical protein; Provisional
Probab=22.76 E-value=3.3e+02 Score=21.90 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHhhhcCchhhhH---HHHHHHHHHHH---HHHHHHHHhhcCCcccHHHHHHHHHHHHHHHhhHHh
Q psy6685 97 PFWNVAGFILGAGSALLGPKGAMA---CTVAVESVIVD---HYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 167 (199)
Q Consensus 97 PlW~~~gf~LGa~tal~G~~~~ma---~t~aVE~~V~~---Hy~~QL~~L~~~d~~~~~L~~~i~~~r~DE~eH~d~ 167 (199)
|+.-+.||++|++.|.+.-+..-. -...+|+.+++ -++++=.++.++-..+.+|.+.|.+=-.+=.+|...
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777776655554433221 12233333321 111112222222235677766666655566667644
No 106
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=22.06 E-value=50 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHhhhcCchh
Q psy6685 95 LLPFWNVAGFILGAGSALLGPKG 117 (199)
Q Consensus 95 L~PlW~~~gf~LGa~tal~G~~~ 117 (199)
+.||.-+.|+++|+.+..+.+.+
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l 28 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLL 28 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998887766543
No 107
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=21.79 E-value=3.7e+02 Score=21.02 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=29.7
Q ss_pred CCCCchhhHH--HHHHHHHHHhhhcCchhhhHHHHHHHHHH
Q psy6685 91 RPTALLPFWN--VAGFILGAGSALLGPKGAMACTVAVESVI 129 (199)
Q Consensus 91 RpS~L~PlW~--~~gf~LGa~tal~G~~~~ma~t~aVE~~V 129 (199)
-||.=+-+-+ .+|+++|+++-+++.+...+|.-||=.++
T Consensus 37 iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~ 77 (118)
T PF12597_consen 37 IPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFF 77 (118)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHH
Confidence 4666555553 57899999999999987777777777766
No 108
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=21.30 E-value=6.5e+02 Score=23.15 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHhhhchhHH-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHH-
Q psy6685 24 LHQKRVTRQLDEIIRVDHAGEL-GADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNV- 101 (199)
Q Consensus 24 ~l~~~~~~~i~rilRVdHAGE~-gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~HL~~f~~~l~~~~~RpS~L~PlW~~- 101 (199)
.|++++|..+.+++.-==++|. .+..|...-......|..+..+.....+|.-|-..+.-++..++.-|.-+...|.-
T Consensus 90 ~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e~f~~~~~~ 169 (369)
T PRK07209 90 GLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEV 169 (369)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4999999999999998667775 34455445555666788888899999999999999999999998766654444421
Q ss_pred ------HHHHHHHHhhhcC----------c-hhhhHHH---HHHHHHHHHHHHHH--HHHhhcCCcccHHHHHHHHHHHH
Q psy6685 102 ------AGFILGAGSALLG----------P-KGAMACT---VAVESVIVDHYNEQ--LRALMSDPAANRELMDVIHKFRD 159 (199)
Q Consensus 102 ------~gf~LGa~tal~G----------~-~~~ma~t---~aVE~~V~~Hy~~Q--L~~L~~~d~~~~~L~~~i~~~r~ 159 (199)
.-|+......+.. + +.+.+++ .-+|-..- |..- +-.|...+ .-+.+.+.|+-+.-
T Consensus 170 p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~ilEGi~F--ysgFa~~~~l~r~g-~M~G~~~~i~~I~R 246 (369)
T PRK07209 170 PSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYCIMEGIFF--YVGFTQILSLGRQN-KMTGIAEQYQYILR 246 (369)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcC-CcccHHHHHHHHHH
Confidence 1222222211111 1 0111111 12344331 2222 22333333 44666677999999
Q ss_pred HHHhhHHhhH
Q psy6685 160 EEQEHHDTGL 169 (199)
Q Consensus 160 DE~eH~d~A~ 169 (199)
||.-|..-+.
T Consensus 247 DE~~H~~f~~ 256 (369)
T PRK07209 247 DESMHLNFGI 256 (369)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 109
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.42 E-value=3.5e+02 Score=20.49 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHH---HHHH------HHHHHHHhhcCCcccHHHHHHHHHHH
Q psy6685 96 LPFWNVAGFILGAGSALLGPKGAMACTVAVESV---IVDH------YNEQLRALMSDPAANRELMDVIHKFR 158 (199)
Q Consensus 96 ~PlW~~~gf~LGa~tal~G~~~~ma~t~aVE~~---V~~H------y~~QL~~L~~~d~~~~~L~~~i~~~r 158 (199)
..+|.+.+.+.|++-..+.++ ++-.+.++.. +.+| .+..++.||..+ +-..|.-.|..++
T Consensus 10 ~ii~a~~~~~~~~~~~~l~~~--~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~-dv~~L~l~l~el~ 78 (106)
T PF10805_consen 10 GIIWAVFGIAGGIFWLWLRRT--YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRD-DVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHH
Confidence 346777777777777766553 3333444333 3322 445566666544 3334444444444
No 110
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.41 E-value=4.2e+02 Score=20.67 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhhcCchh
Q psy6685 98 FWNVAGFILGAGSALLGPKG 117 (199)
Q Consensus 98 lW~~~gf~LGa~tal~G~~~ 117 (199)
+|-+.|+++|++.+.++.+-
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 46677888888777766554
No 111
>PF12713 DUF3806: Domain of unknown function (DUF3806); InterPro: IPR024266 This entry represents a domain found at the C terminus of a family of bacterial proteins, whose function is unknown. In two related Bacteroides species the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7, whose C-terminal domain is a phage integrase.; PDB: 3HLZ_A.
Probab=20.16 E-value=1.7e+02 Score=21.46 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCCCchhhHHHHHHHHHH-Hhhhc-Cchh
Q psy6685 78 KAKFEELIRKYRVRPTALLPFWNVAGFILGA-GSALL-GPKG 117 (199)
Q Consensus 78 L~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa-~tal~-G~~~ 117 (199)
+..+++.+.+..+.|.=..+ |...|++||- +..=+ |-.|
T Consensus 3 l~~lq~~id~~~~~~~d~~~-~~alGialG~~L~~e~~g~eW 43 (87)
T PF12713_consen 3 LEKLQRVIDSGEISPDDKDE-WQALGIALGDLLANEVDGMEW 43 (87)
T ss_dssp HHHHHHHHHTT-S-TT-HHH-HHHHHHHHHHHHHHHSTT-EE
T ss_pred HHHHHHHHHhCCCCCCcHHH-HHHHHHHHHHHHHhhcCCCeE
Confidence 45677788777788888888 9999999995 34444 4333
Done!