RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6685
(199 letters)
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 158
Score = 82.7 bits (203), Expect = 8e-21
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 8/139 (5%)
Query: 32 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVR 91
L+E++ + E+GA Y + ++ KI + ++EK H+A +L +
Sbjct: 11 SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPG 70
Query: 92 PTALLPFWNVAGFI---LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 148
+ P ++ + + + + E + + Y + + +
Sbjct: 71 KEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLK-----LEEMVKEE 125
Query: 149 ELMDVIHKFRDEEQEHHDT 167
E ++ D E+ H+ T
Sbjct: 126 EKKRLMRYLADMERGHYYT 144
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284
homologue {Magnetospirillum magnetotacticum ms-1 [TaxId:
272627]}
Length = 152
Score = 28.7 bits (63), Expect = 0.26
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 33 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 88
+R E+ Y A + V + +E H ++ I K
Sbjct: 91 PYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKT 146
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
batatas) [TaxId: 4120]}
Length = 341
Score = 26.3 bits (57), Expect = 2.5
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 51 YAGQMAVLGNSSVAPKIQEMWDQEKAHK---AKFEELIRKYRVRPTALLPFWN 100
G + ++ W H+ +E ++ K P+ LPFWN
Sbjct: 92 CNGGYDQVNFPDQEIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWN 144
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 216
Score = 25.9 bits (56), Expect = 3.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 11 RVNYQQGFRLVRNLHQKRVTRQLDEIIRVDH 41
V+Y+ ++L R L RV D ++ ++H
Sbjct: 19 TVDYRTAWQLQRELADARVAGGADTLLLLEH 49
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 26.1 bits (56), Expect = 4.0
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 63 VAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAG 103
+ ++ W +EK + E RK R T G
Sbjct: 13 LEEEVLAFWKREKIFQKSVEN--RKGGPRYTVYEGPPTANG 51
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 24.9 bits (54), Expect = 4.7
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 43 GELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRK 87
GE G + + G A LG + ++ D+E +++R+
Sbjct: 101 GEYGIENVAVGVPAKLGKNGAEVADIKLSDEEIEKLRNSAKILRE 145
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 25.0 bits (54), Expect = 6.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 136 QLRALMSDPAANRELMD-VIHKFRDEEQEHHDTGLEHGAE 174
+L + P + ++ KF EE+ DT LE G +
Sbjct: 131 RLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVD 170
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 24.9 bits (53), Expect = 7.5
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 61 SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL 112
++ K Q W+++ KAK R + L+ F +G L G
Sbjct: 7 HAIEAKWQRFWEEKGFMKAKDL---PGGRGKQYVLVMFPYPSG-DLHMGHLK 54
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 169
Score = 24.7 bits (53), Expect = 7.6
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 18/148 (12%)
Query: 22 RNLHQKRVTRQLDEIIRVDHAGELGADRIY---AGQMAVLGNSSVAPKIQEMWDQEKAHK 78
R + +V L++ A EL A Y + + +A ++ + E H
Sbjct: 2 REDRKAKVIEVLNKAR----AMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHA 57
Query: 79 AKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLR 138
F E I++ PT V G E ++ Y++ L+
Sbjct: 58 ENFAERIKELGGEPTTQKEGKVVTGQ---------AVPVIYESDADQEDATIEAYSQFLK 108
Query: 139 ALMSDPAANRELMDVIHKFRDEEQEHHD 166
+ + + + +EEQ H
Sbjct: 109 --VCKEQGDIVTARLFERIIEEEQAHLT 134
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 24.9 bits (53), Expect = 7.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 65 PKIQEMWDQEKAHKAKFEE 83
P+IQE WD E + E+
Sbjct: 25 PQIQEKWDAEDQYHKALEK 43
>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX
{Thermotoga maritima [TaxId: 2336]}
Length = 118
Score = 24.0 bits (51), Expect = 8.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 36 IIRVDHAGELGADRI 50
V + E+GADR+
Sbjct: 93 KWNVKNPSEVGADRV 107
>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 114
Score = 23.9 bits (51), Expect = 9.6
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 37 IRVDHAGELGADRIYA 52
LG DR A
Sbjct: 90 NGYLDYQRLGLDRWLA 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.397
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,026
Number of extensions: 32529
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 18
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)